Citrus Sinensis ID: 016817
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| 224128396 | 381 | predicted protein [Populus trichocarpa] | 0.984 | 0.986 | 0.704 | 1e-159 | |
| 224068434 | 381 | predicted protein [Populus trichocarpa] | 0.994 | 0.997 | 0.692 | 1e-158 | |
| 255548537 | 382 | ATP binding protein, putative [Ricinus c | 0.997 | 0.997 | 0.679 | 1e-157 | |
| 359480106 | 379 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 1.0 | 0.631 | 1e-131 | |
| 297743947 | 287 | unnamed protein product [Vitis vinifera] | 0.751 | 1.0 | 0.638 | 1e-102 | |
| 449464106 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.748 | 0.655 | 0.307 | 4e-30 | |
| 168027995 | 524 | predicted protein [Physcomitrella patens | 0.628 | 0.458 | 0.318 | 3e-29 | |
| 255580517 | 419 | ATP binding protein, putative [Ricinus c | 0.751 | 0.684 | 0.283 | 2e-24 | |
| 42566738 | 481 | P-loop containing nucleoside triphosphat | 0.725 | 0.575 | 0.296 | 2e-23 | |
| 42570140 | 479 | P-loop containing nucleoside triphosphat | 0.725 | 0.578 | 0.296 | 2e-23 |
| >gi|224128396|ref|XP_002320319.1| predicted protein [Populus trichocarpa] gi|222861092|gb|EEE98634.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/376 (70%), Positives = 317/376 (84%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQLS + DE S L YCWWRSAAKFDECV+LKLDLP++++LTPRLRVL+E+ERLAL
Sbjct: 1 MKSQLSSNDEDECQLSRLGYCWWRSAAKFDECVRLKLDLPHIASLTPRLRVLKELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
IA +GLNELR+K YRSGDFW+P GG++K MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 IAHEGLNELRYKLQMYRSGDFWVPTGGLKKEEMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
V RSGL+ FA+TSSG ++ TMYMEEHNVMRS+Q GFCVYDSRGFNY ++ + LEELS
Sbjct: 121 VFGRSGLIPFARTSSGGATKYTTMYMEEHNVMRSMQGGFCVYDSRGFNYGKIGDALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWMS+G+HHNQ CLRS D L++ D E L+SS K+V R V+ MVV NIAE++KA KA
Sbjct: 181 SWMSDGIHHNQLCLRSGDDVLLEADTETVGLRSSSKFVQRTVNIPMVVVNIAEVHKASKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVY 300
DSKPL+AT+ LF +P LRKCNENPILILTHGD+L+TEER+D RL++CE LG+SE +GVY
Sbjct: 241 SDSKPLEATRELFHSPALRKCNENPILILTHGDLLTTEERMDMRLRLCERLGISETNGVY 300
Query: 301 DIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA 360
DIVCLTEYGF AEE DPVTAY++AEA+YRALLISDRGHSPKK +DWA+ +LS ++CF+
Sbjct: 301 DIVCLTEYGFLAEESDPVTAYALAEAVYRALLISDRGHSPKKNLQDWALFVLSWLMCFMG 360
Query: 361 SFLSLLADLCSRLGQR 376
+ S LADLCS+LGQR
Sbjct: 361 ALFSFLADLCSKLGQR 376
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068434|ref|XP_002302744.1| predicted protein [Populus trichocarpa] gi|222844470|gb|EEE82017.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/381 (69%), Positives = 319/381 (83%), Gaps = 1/381 (0%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQ S + DE+ S L YCWWRSAAKFDECV+LK D+PN+++LTPR+RVLRE+ERLAL
Sbjct: 1 MKSQHSSNDEDEHQLSSLGYCWWRSAAKFDECVRLKSDIPNIASLTPRVRVLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I+ +GLNE+R+K YRSGDFW+P GGI+K MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 ISHEGLNEVRYKLQMYRSGDFWVPTGGIKKEEMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL RSGL+ FAQTSSG +S TMYMEEHNVMRSLQ GFCVYDSRGF+Y ++ + LEELS
Sbjct: 121 VLGRSGLIPFAQTSSGCASKYTTMYMEEHNVMRSLQGGFCVYDSRGFSYGKIGDALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWMS+GVHHNQ CLRS D L+++DAE L+ S K+V R V+F+MVV NIAE+YKALKA
Sbjct: 181 SWMSDGVHHNQLCLRSGDDVLLEDDAETAGLRPSSKFVQRTVNFSMVVVNIAEVYKALKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVY 300
DSKPL+AT+ LF +PGLR CNENP+LILTHGD+L+TE+R+D R+K+CE LG+SE +GVY
Sbjct: 241 SDSKPLEATRELFHSPGLRNCNENPMLILTHGDLLTTEQRIDIRIKLCERLGISETNGVY 300
Query: 301 DIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA 360
DIVCLTEYGF AEE DPVTAY++ EA+YRALLI+DRGH PKK +DWAV + S ++C
Sbjct: 301 DIVCLTEYGFLAEESDPVTAYAVTEAVYRALLIADRGHFPKKNLQDWAVFLFSWLMCLTG 360
Query: 361 SFLSLLADLCSRLGQRGQKLK 381
+ + LADLCS+LG+R KLK
Sbjct: 361 ALFAFLADLCSKLGRR-DKLK 380
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548537|ref|XP_002515325.1| ATP binding protein, putative [Ricinus communis] gi|223545805|gb|EEF47309.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 259/381 (67%), Positives = 319/381 (83%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MK+QLS + D+Y PS ++YCWWRS AKF+EC +LKL LPN+S+LTPR+RVLRE+ERLAL
Sbjct: 1 MKNQLSSSDEDDYPPSRMLYCWWRSTAKFEECARLKLGLPNISSLTPRIRVLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I+ +GLNELR+K Y+SGD+W+P GGI+K MDIP VITILL+GFS SGKSSLVNLMYS
Sbjct: 61 ISHEGLNELRYKLQMYKSGDYWVPTGGIEKEEMDIPSVITILLVGFSSSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL R+GLV FAQTSSG + + TMYMEEHNVMRS+QSGFCV+DSRGFNY+++ E LEELS
Sbjct: 121 VLGRTGLVPFAQTSSGGAKNYTTMYMEEHNVMRSMQSGFCVFDSRGFNYDKIGEALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWM++GVHHNQ CLRS D L+K+D E +SS K+++RRV+ AMVV NIAE+YKALKA
Sbjct: 181 SWMTDGVHHNQLCLRSGDATLLKDDIEAAASRSSSKFLIRRVNCAMVVVNIAEVYKALKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVY 300
GDSK L+AT+ LF +P LRKCNENPILILTHGD+L+ EER++ R+KICE LG+ E +GVY
Sbjct: 241 GDSKQLEATRELFCSPALRKCNENPILILTHGDLLTNEERIEGRIKICERLGIQETNGVY 300
Query: 301 DIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA 360
D+VCLTEYGF AEE DPVTAY++AEA+YRALLISDRGH P K F+DWA+ ILS ++ F+
Sbjct: 301 DVVCLTEYGFLAEESDPVTAYAVAEAVYRALLISDRGHFPSKKFQDWAIFILSWLMSFLG 360
Query: 361 SFLSLLADLCSRLGQRGQKLK 381
+ LA++C+ LGQR KLK
Sbjct: 361 IVFAFLAEICTALGQRRNKLK 381
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480106|ref|XP_003632400.1| PREDICTED: uncharacterized protein LOC100854991 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/380 (63%), Positives = 304/380 (80%), Gaps = 1/380 (0%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQ S D+Y+ LVYCWWRSA F E K K++LPNVSTLTP L++LRE+ERLAL
Sbjct: 1 MKSQFSSTYEDDYESLMLVYCWWRSAVTFGEAAKFKVELPNVSTLTPTLKLLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
+A +GL+ELR K +SYRSGDFW+P GG+++ MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 MAREGLSELRQKLVSYRSGDFWVPTGGMKREDMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL RSGL+ FA TSS NS+ T +MEEHNV+RS+QSGFCVYDSRG +Y+ + E +EE+S
Sbjct: 121 VLGRSGLIPFATTSSENSAKCTTKFMEEHNVLRSMQSGFCVYDSRGLDYDLMGESIEEVS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
WM+ GVHHNQ CLR+ D LM + + SS K+ R+V+ AMVV NIAEI+K+LK
Sbjct: 181 EWMTNGVHHNQLCLRTGD-NLMSEEELSEVPGSSSKFTPRKVNCAMVVVNIAEIFKSLKK 239
Query: 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVY 300
GD KPL+AT+ LF P L+KCNENPILI+THGD+LSTEER+ RL +CE+LG+SE +GVY
Sbjct: 240 GDWKPLEATRELFRCPALKKCNENPILIMTHGDLLSTEERIKIRLTLCEFLGISETTGVY 299
Query: 301 DIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA 360
DIVCLTEYGF A+E DPVT+Y+++EA+YRALLISDRGH PK++ DW +L L+ ++C++A
Sbjct: 300 DIVCLTEYGFLADESDPVTSYALSEAVYRALLISDRGHIPKRSILDWTLLALALLMCYLA 359
Query: 361 SFLSLLADLCSRLGQRGQKL 380
+F LA+ S+LGQ+ +KL
Sbjct: 360 AFFEFLAEFFSKLGQKKKKL 379
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743947|emb|CBI36917.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/288 (63%), Positives = 233/288 (80%), Gaps = 1/288 (0%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVM 152
MDIPPVITILL+GFSGSGKSSLVNLMYSVL RSGL+ FA TSS NS+ T +MEEHNV+
Sbjct: 1 MDIPPVITILLVGFSGSGKSSLVNLMYSVLGRSGLIPFATTSSENSAKCTTKFMEEHNVL 60
Query: 153 RSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK 212
RS+QSGFCVYDSRG +Y+ + E +EE+S WM+ GVHHNQ CLR+ D LM + +
Sbjct: 61 RSMQSGFCVYDSRGLDYDLMGESIEEVSEWMTNGVHHNQLCLRTGD-NLMSEEELSEVPG 119
Query: 213 SSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHG 272
SS K+ R+V+ AMVV NIAEI+K+LK GD KPL+AT+ LF P L+KCNENPILI+THG
Sbjct: 120 SSSKFTPRKVNCAMVVVNIAEIFKSLKKGDWKPLEATRELFRCPALKKCNENPILIMTHG 179
Query: 273 DMLSTEERLDARLKICEYLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALL 332
D+LSTEER+ RL +CE+LG+SE +GVYDIVCLTEYGF A+E DPVT+Y+++EA+YRALL
Sbjct: 180 DLLSTEERIKIRLTLCEFLGISETTGVYDIVCLTEYGFLADESDPVTSYALSEAVYRALL 239
Query: 333 ISDRGHSPKKTFRDWAVLILSCMLCFIASFLSLLADLCSRLGQRGQKL 380
ISDRGH PK++ DW +L L+ ++C++A+F LA+ S+LGQ+ +KL
Sbjct: 240 ISDRGHIPKRSILDWTLLALALLMCYLAAFFEFLAEFFSKLGQKKKKL 287
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus] gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 161/312 (51%), Gaps = 26/312 (8%)
Query: 48 RLRVLREM----ERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILL 103
R RV RE+ ++L I + LN+ + K LSY G + +GG++ DIP +++L
Sbjct: 84 RNRVHREIIESYDQLR-IRSENLNQAKQKILSYSPGAWIEQVGGMKLSDYDIPQTTSLIL 142
Query: 104 MGFSGSGKSSLVNLMYSVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162
+G GSGKSSL+N + V AQ S +S T ++ E+ ++R +S FC+Y
Sbjct: 143 IGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFLHEYMILRKSKS-FCLY 201
Query: 163 DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK-YVLRR 221
D+RG + N + +E L WMS+GVHH + R D + + N +S P+ V+R
Sbjct: 202 DTRGLS-NDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRCKARQSFPRSRVVRI 260
Query: 222 VDFAMVVSNIAEIYKALKAGDSKPLDATKRL---FSAPGLRKCNENPILILTHGDMLSTE 278
++F + V + + K++ GD K D + + F+ P L ++ P+++LTHGD+LS
Sbjct: 261 INFVIFVVDGLSVLKSID-GDDKQKDYDRVITTAFNCPYLSYGDDKPVVVLTHGDLLSFA 319
Query: 279 ERLDARLKICEYLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGH 338
E + R + LG+ ++DI + DPVT +I + ++ L +D+
Sbjct: 320 ENVRVRGHLGNLLGIPSTKQIFDI---------PDRYDPVTELTIIDMLHYCLEHADKNL 370
Query: 339 SPKKTFRDWAVL 350
PK+ W V+
Sbjct: 371 PPKR----WTVI 378
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168027995|ref|XP_001766514.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682159|gb|EDQ68579.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 129/242 (53%), Gaps = 2/242 (0%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
+ E+R K Y G + + GG++K IP V T+L++G G+GKS+L+N + VL+
Sbjct: 185 IEEMRLKLQRYEPGQWLVESGGMRKSDFAIPEVTTLLVVGSMGAGKSTLINNLIRVLNNK 244
Query: 126 GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G+ T ++ E+ + S ++ CV+DSRG +V +GLE L WM +
Sbjct: 245 SQDFDRAQVCGDPGENGTYFLNEYMLNES-KNNICVFDSRGMPELKVADGLEVLEDWMVK 303
Query: 186 GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR-VDFAMVVSNIAEIYKALKAGDSK 244
GV H Q +R+ D + +K E + K +R ++F + V N ++K +GD+
Sbjct: 304 GVRHGQMVIRTSDSSRVKEAVERKARQGHHKLSKKRHINFVIFVINATTVHKIRHSGDTL 363
Query: 245 PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVYDIVC 304
R+F P + ++ P++++THGD LS ++RL AR+ + LGVS + V+DI
Sbjct: 364 SRPNFLRIFKFPLITFKDDRPVVVMTHGDELSEDDRLAARIYLGNLLGVSPVDHVFDIAG 423
Query: 305 LT 306
T
Sbjct: 424 FT 425
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580517|ref|XP_002531083.1| ATP binding protein, putative [Ricinus communis] gi|223529329|gb|EEF31297.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 154/310 (49%), Gaps = 23/310 (7%)
Query: 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123
+ L+E + K LSY G + +GG++ ++P T+LL+G GSGKSSLVN + V
Sbjct: 93 ESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTTTLLLVGPRGSGKSSLVNRISKVFD 152
Query: 124 RSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW 182
AQ S S+ T +++E+ ++ + FC+YD+RGF ++ ++ +E L W
Sbjct: 153 DDKFAPERAQVSYNPSAGEGTYFLQEY-MIPGCSTSFCLYDTRGF-FDNSYDNIEMLKYW 210
Query: 183 MSEGVHHNQRCLRS-DDCAL---MKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKAL 238
M+ GV H + +R DD +L MK + +S R V+F + V N + K++
Sbjct: 211 MTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKN---RTVNFVIFVVNGLAVLKSM 267
Query: 239 KAGDSKP---LDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSE 295
+ K D F+ P ++ P++++THGD+LS +R R+ + E LG+
Sbjct: 268 GSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLSLSDRTRIRVHLGELLGIPP 327
Query: 296 ISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCM 355
++DI E CDPVT +I + + +L +D + P+ T + ++ +
Sbjct: 328 AKQIFDI---------PESCDPVTELTIIDMLRYSLEHAD-NNLPQDTVAEKVHRVIGSL 377
Query: 356 LCFIASFLSL 365
+ F+ L
Sbjct: 378 YACVHLFIML 387
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566738|ref|NP_193039.3| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] gi|332657819|gb|AEE83219.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 20/297 (6%)
Query: 51 VLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110
+L+ + L + L + R++ LSY G + ++ +IP +I+L+G G+G
Sbjct: 63 ILQSHDLLLRTSKRKLRQARNEILSYTPGSW----SDVKLSDYNIPKTTSIMLVGPKGAG 118
Query: 111 KSSLVNLMYSVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169
KSSLVN + V+ +L AQ S G S T +++E+ + R + FC+YD+RG +
Sbjct: 119 KSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSR 178
Query: 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229
+ + WM+ GV H + + + D + +K D I D Y R+V+ + V
Sbjct: 179 ISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERRKVNSIIFVV 235
Query: 230 NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289
N EI K+++ S T F++P L ++ P +++THGDMLS EER R+ + E
Sbjct: 236 NAVEILKSMECETSYASMITT-AFNSPILLFKDDKPAVVMTHGDMLSREERARVRVFLGE 294
Query: 290 YLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHS--PKKTF 344
LG+ ++DI E D TA +I + +L +D+ PKK F
Sbjct: 295 LLGIPPHKQIFDI---------PESRDTATAITICNLLCYSLQHADKNFVFLPKKNF 342
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42570140|ref|NP_849371.2| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] gi|332657820|gb|AEE83220.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 20/297 (6%)
Query: 51 VLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110
+L+ + L + L + R++ LSY G + ++ +IP +I+L+G G+G
Sbjct: 61 ILQSHDLLLRTSKRKLRQARNEILSYTPGSW----SDVKLSDYNIPKTTSIMLVGPKGAG 116
Query: 111 KSSLVNLMYSVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169
KSSLVN + V+ +L AQ S G S T +++E+ + R + FC+YD+RG +
Sbjct: 117 KSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSR 176
Query: 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229
+ + WM+ GV H + + + D + +K D I D Y R+V+ + V
Sbjct: 177 ISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERRKVNSIIFVV 233
Query: 230 NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289
N EI K+++ S T F++P L ++ P +++THGDMLS EER R+ + E
Sbjct: 234 NAVEILKSMECETSYASMITT-AFNSPILLFKDDKPAVVMTHGDMLSREERARVRVFLGE 292
Query: 290 YLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHS--PKKTF 344
LG+ ++DI E D TA +I + +L +D+ PKK F
Sbjct: 293 LLGIPPHKQIFDI---------PESRDTATAITICNLLCYSLQHADKNFVFLPKKNF 340
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| TAIR|locus:2123236 | 481 | AT4G13030 [Arabidopsis thalian | 0.725 | 0.575 | 0.303 | 2e-26 |
| TAIR|locus:2123236 AT4G13030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 2.0e-26, P = 2.0e-26
Identities = 90/297 (30%), Positives = 147/297 (49%)
Query: 51 VLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110
+L+ + L + L + R++ LSY G W ++ +IP +I+L+G G+G
Sbjct: 63 ILQSHDLLLRTSKRKLRQARNEILSYTPGS-W---SDVKLSDYNIPKTTSIMLVGPKGAG 118
Query: 111 KSSLVNLMYSVLSRSGLVLF-AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169
KSSLVN + V+ +L AQ S G S T +++E+ + R + FC+YD+RG +
Sbjct: 119 KSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSR 178
Query: 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229
+ + WM+ GV H + + + D + +K D I D Y R+V+ + V
Sbjct: 179 ISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERRKVNSIIFVV 235
Query: 230 NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289
N EI K+++ S T F++P L ++ P +++THGDMLS EER R+ + E
Sbjct: 236 NAVEILKSMECETSYASMITTA-FNSPILLFKDDKPAVVMTHGDMLSREERARVRVFLGE 294
Query: 290 YLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHS--PKKTF 344
LG+ ++DI P E D TA +I + +L +D+ PKK F
Sbjct: 295 LLGIPPHKQIFDI--------P-ESRDTATAITICNLLCYSLQHADKNFVFLPKKNF 342
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 382 382 0.00091 117 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 619 (66 KB)
Total size of DFA: 264 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.34u 0.11s 30.45t Elapsed: 00:00:02
Total cpu time: 30.34u 0.11s 30.45t Elapsed: 00:00:02
Start: Tue May 21 01:34:50 2013 End: Tue May 21 01:34:52 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | grail3.0061015901 | hypothetical protein (381 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 382 | |||
| TIGR00157 | 245 | TIGR00157, TIGR00157, ribosome small subunit-depen | 0.003 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 0.004 |
| >gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ G SG GKSSL+N + + + V + G HT T H + G
Sbjct: 122 ISVFAGQSGVGKSSLINALDPSVKQQ--VNDISSKLGLGKHTTT-----HVELFHFHGGL 174
Query: 160 CVYDSRGFN 168
+ D+ GFN
Sbjct: 175 -IADTPGFN 182
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Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSS---HTITMYMEEHNVMRSLQ 156
+L+G SG GKS+L+N + L S HT T H + L
Sbjct: 166 ITVLLGQSGVGKSTLINAL-----LPELNQKTGEISEKLGRGRHTTT-----HVELFPLP 215
Query: 157 SGFCVYDSRGFN 168
G + D+ GF
Sbjct: 216 GGGWIIDTPGFR 227
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Length = 301 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.98 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.98 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.98 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.98 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.98 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.95 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.94 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.92 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.92 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.92 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.91 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.91 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.9 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.88 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.88 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.87 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.87 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.86 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.85 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.84 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.84 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.83 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.83 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.83 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.81 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.81 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.81 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.81 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.79 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.78 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.78 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.74 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.74 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.7 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.66 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.65 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.65 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.65 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.63 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.62 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.56 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.56 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.55 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.55 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.47 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.44 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.44 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.43 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.38 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.3 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.29 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.29 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.28 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.28 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.2 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.2 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.14 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.14 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.12 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.06 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.0 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.96 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.93 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.89 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.89 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.82 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.82 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.76 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.76 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.75 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.74 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.73 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.68 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.68 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.63 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.62 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.61 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.61 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.6 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.59 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.53 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.53 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.53 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.53 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.51 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.5 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.48 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.43 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.43 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.4 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.35 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.35 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.34 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.33 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.31 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.3 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.28 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.26 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.22 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.21 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.18 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.17 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.17 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.13 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.11 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 98.1 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.09 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.09 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.08 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.08 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.07 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.07 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.06 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.05 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.04 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.02 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.01 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.0 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.99 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.98 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.97 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 97.96 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 97.93 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.89 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 97.89 | |
| PRK11545 | 163 | gntK gluconate kinase 1; Provisional | 97.88 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.88 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 97.87 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 97.86 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.85 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.84 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.83 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 97.82 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.82 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-59 Score=421.48 Aligned_cols=217 Identities=14% Similarity=0.139 Sum_probs=188.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++|+++||+|+|+... +|+||||+|++||+++|+||||||||||||||+||.+ ++|+|+++|.++...
T Consensus 1 ~mi~i~~l~K~fg~~~------VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~----- 69 (240)
T COG1126 1 MMIEIKNLSKSFGDKE------VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK----- 69 (240)
T ss_pred CeEEEEeeeEEeCCeE------EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch-----
Confidence 3789999999997544 6999999999999999999999999999999999999 999999999865321
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+...+|+ ++|||||+++|||++||.||+........ .....++++.++|+++||.+..+ .||.+||||||||
T Consensus 70 ---~~~~~~R~-~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-~yP~qLSGGQqQR 144 (240)
T COG1126 70 ---KDILKLRR-KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-AYPAQLSGGQQQR 144 (240)
T ss_pred ---hhHHHHHH-hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-hCccccCcHHHHH
Confidence 14556776 99999999999999999999987653321 11223356777899999998865 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|||||||+++|+++|+|| +|||+...++++.++++ .+.|+|+|+|||+|.+ +.+++|||++|++ +..++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L---A~eGmTMivVTHEM~F--Ar~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL---AEEGMTMIIVTHEMGF--AREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH---HHcCCeEEEEechhHH--HHHhhheEEEeeCCEEEEecC
Confidence 999999999999999999 99999999999999999 4579999999998888 9999999999998 66678
Q ss_pred ccceeeE
Q 016817 296 ISGVYDI 302 (382)
Q Consensus 296 ~~~v~~~ 302 (382)
++++|..
T Consensus 220 p~~~f~~ 226 (240)
T COG1126 220 PEEFFDN 226 (240)
T ss_pred HHHHhcC
Confidence 8888854
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-59 Score=439.77 Aligned_cols=281 Identities=18% Similarity=0.158 Sum_probs=224.5
Q ss_pred hhHHHHHhhhcccC-CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~-~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
||++++|+|.|..+ +..+ .+|+||||+|++||++||||.||||||||+|||++|.. ++|+|.++|+++..+
T Consensus 1 mI~l~~vsK~~~~~~~~~~--~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l----- 73 (339)
T COG1135 1 MIELENVSKTFGQTGTGTV--TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTAL----- 73 (339)
T ss_pred CeEEEeeeeeeccCCCCce--eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccC-----
Confidence 57899999999763 2222 27999999999999999999999999999999999999 899999999977643
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....++..|+ +|||+||+++|+...||++|+.+.....+. +...++++.++++.+||.+..+ +||.+|||||||||
T Consensus 74 -~~~~Lr~~R~-~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-~yP~qLSGGQKQRV 150 (339)
T COG1135 74 -SEAELRQLRQ-KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-RYPAQLSGGQKQRV 150 (339)
T ss_pred -ChHHHHHHHh-hccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-cCchhcCcchhhHH
Confidence 3455666776 999999999999999999999876543331 2233467888999999997755 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|+|||+|| +|||++...|+++|+++ +++.|.||++|||.|+. +.++||+|.+|++ +..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I--n~~lglTIvlITHEm~V--vk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDI--NRELGLTIVLITHEMEV--VKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH--HHHcCCEEEEEechHHH--HHHHhhhheEeeCCEEEEeccH
Confidence 99999999999999999 99999999999999999 47889999999997777 9999999999998 777888
Q ss_pred cceeeEEEeccccCCCCcCCchhHHHHHHHHHHHhhhccCCCCCcccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Q 016817 297 SGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA--SFLSLLADLCSRLG 374 (382)
Q Consensus 297 ~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 374 (382)
.++|..| .++.+...+................. ..+..++.+. |.| +..|+++++++++|
T Consensus 227 ~~vF~~P-----------k~~~t~~fi~~~~~~~~~~~~~~~l~---~~~~~~~rl~----f~g~~~~~plis~~~~~~~ 288 (339)
T COG1135 227 SEVFANP-----------KHAITQEFIGETLEIDLPEELLERLE---SGDGPLLRLT----FTGESADQPLLSEVARRFG 288 (339)
T ss_pred HHhhcCc-----------chHHHHHHHHhhccccCcHHHHhhhc---cCCceEEEEE----ecCccccchHHHHHHHHhC
Confidence 8888443 33344433332211111100000000 2455666666 888 99999999999999
Q ss_pred cccc
Q 016817 375 QRGQ 378 (382)
Q Consensus 375 ~~~~ 378 (382)
+++.
T Consensus 289 v~~n 292 (339)
T COG1135 289 VDVN 292 (339)
T ss_pred CceE
Confidence 9875
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=404.27 Aligned_cols=219 Identities=15% Similarity=0.137 Sum_probs=190.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||||+|++.. +++|+||+|++||+++++|||||||||+||+|++|++ ++|+|+++|+++.+...
T Consensus 1 MI~~~nvsk~y~~~~------av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~---- 70 (309)
T COG1125 1 MIEFENVSKRYGNKK------AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDP---- 70 (309)
T ss_pred CceeeeeehhcCCce------eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCH----
Confidence 689999999997544 7999999999999999999999999999999999999 89999999998765443
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccc-cccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKN-DAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSGGqkQRv 222 (382)
.++|+ +||||-|...|||++||.+||..+....+ .....++++.++++++||+. ...+|||++|||||||||
T Consensus 71 -----~~LRr-~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 -----VELRR-KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRV 144 (309)
T ss_pred -----HHHHH-hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHH
Confidence 23776 99999999999999999999988765443 23334567889999999975 345699999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
.+||||+.+|+|||+|| +|||.++..+++.++++ +++.|+|||+||||++. +.+++|+|++|++ +..++|
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l--q~~l~kTivfVTHDidE--A~kLadri~vm~~G~i~Q~~~P 220 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL--QKELGKTIVFVTHDIDE--ALKLADRIAVMDAGEIVQYDTP 220 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH--HHHhCCEEEEEecCHHH--HHhhhceEEEecCCeEEEeCCH
Confidence 99999999999999999 99999999999999999 47789999999995554 9999999999997 555677
Q ss_pred cceeeEEE
Q 016817 297 SGVYDIVC 304 (382)
Q Consensus 297 ~~v~~~~~ 304 (382)
.+++..|.
T Consensus 221 ~~il~~Pa 228 (309)
T COG1125 221 DEILANPA 228 (309)
T ss_pred HHHHhCcc
Confidence 77775543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=413.33 Aligned_cols=218 Identities=15% Similarity=0.109 Sum_probs=188.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.+.++++||+|+|++.. +|+|+||+|++||+++|+||||||||||||+|+|++. ++|+|.++|+++.+.+..
T Consensus 3 ~~~l~i~~v~k~yg~~~------av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~- 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT------AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE- 75 (352)
T ss_pred CceEEEEeeeeecCCee------EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-
Confidence 35789999999997322 6999999999999999999999999999999999999 899999999998765432
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
+ |.||||||++.|||++||.+||.+......... ..++++.++++.++|.++.. ++|++|||||||
T Consensus 76 ----------k-R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-R~p~qLSGGQqQ 143 (352)
T COG3842 76 ----------K-RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-RKPHQLSGGQQQ 143 (352)
T ss_pred ----------h-cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-hChhhhChHHHH
Confidence 2 489999999999999999999988764221111 12357889999999998765 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||||||||+.+|++||||| +||.+.+.++...++++ +++.|.|.|+|||| .+++..++|||++|++ .-.+
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l--q~~~giT~i~VTHD--qeEAl~msDrI~Vm~~G~I~Q~g 219 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL--QRELGITFVYVTHD--QEEALAMSDRIAVMNDGRIEQVG 219 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHH--HHhcCCeEEEEECC--HHHHhhhccceEEccCCceeecC
Confidence 9999999999999999999 99999999999999999 36789999999995 5559999999999998 4456
Q ss_pred cccceeeEEE
Q 016817 295 EISGVYDIVC 304 (382)
Q Consensus 295 ~~~~v~~~~~ 304 (382)
+|+++|..|.
T Consensus 220 tP~eiY~~P~ 229 (352)
T COG3842 220 TPEEIYERPA 229 (352)
T ss_pred CHHHHhhCcc
Confidence 7777886654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-53 Score=388.55 Aligned_cols=212 Identities=20% Similarity=0.151 Sum_probs=179.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++||++.|..+...+ .+|+++||+|++||+++|+|||||||||||++|.|+.. ++|.|+++|+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~--~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l------ 72 (226)
T COG1136 1 MIELKNVSKIYGLGGEKV--EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKL------ 72 (226)
T ss_pred CcEEeeeEEEeccCCcce--EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcC------
Confidence 356899999998665433 27999999999999999999999999999999999999 899999999977543
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
...++..+|+++||||||+++|+|.+|+.||+.......+... ...+.+..+++.+||.+...+++|.+||||||||||
T Consensus 73 ~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred CHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence 3456667888899999999999999999999986542222111 234556778889999977666899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||+|| +||.++.+.|+++|+++. ++.|+||||||||+++ +. +|||++.+++
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~--~~~g~tii~VTHd~~l--A~-~~dr~i~l~d 217 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELN--KERGKTIIMVTHDPEL--AK-YADRVIELKD 217 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HH-hCCEEEEEeC
Confidence 9999999999999999 999999999999999994 6679999999998877 55 6777776654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=392.38 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=174.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++++++.|+.. . ||+|+||+|++||+++|+||||||||||||+|+||.+ ++|+|.++|+++....
T Consensus 3 ~l~i~~v~~~f~~~--~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~----- 71 (248)
T COG1116 3 LLEIEGVSKSFGGV--E----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG----- 71 (248)
T ss_pred eEEEEeeEEEeCce--E----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----
Confidence 57889999999752 2 6999999999999999999999999999999999999 8999999999763221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+|||||++.|||+.||.+|+.+.....+ ......+++.++++.+||.++.+ ++|++|||||||||+
T Consensus 72 ----------~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-~~P~qLSGGMrQRVa 140 (248)
T COG1116 72 ----------PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-KYPHQLSGGMRQRVA 140 (248)
T ss_pred ----------CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-cCccccChHHHHHHH
Confidence 379999999999999999999977543322 12223356888999999997755 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||..++..+++.+.+++ ++.++||++||| +++|+..++|||++|.+
T Consensus 141 iARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw--~~~~~TvllVTH--di~EAv~LsdRivvl~~ 206 (248)
T COG1116 141 IARALATRPKLLLLDEPFGALDALTREELQDELLRLW--EETRKTVLLVTH--DVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH--HhhCCEEEEEeC--CHHHHHhhhCEEEEecC
Confidence 9999999999999999 999999999999999995 667899999999 56669999999999976
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-52 Score=367.07 Aligned_cols=207 Identities=21% Similarity=0.188 Sum_probs=182.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+|+||+|.|+.+. ++|+||||+|++||++-|+||||||||||+|+|++..+ ++|+|+++|+++..++.
T Consensus 1 mI~f~~V~k~Y~~g~-----~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~---- 71 (223)
T COG2884 1 MIRFENVSKAYPGGR-----EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG---- 71 (223)
T ss_pred CeeehhhhhhcCCCc-----hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc----
Confidence 688999999998773 27999999999999999999999999999999999999 89999999998875543
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+...+|+ +||+||||+.|.++.||+||+.+.....+. +...++++.++|+.+||.+... ..|.+|||||||||+
T Consensus 72 --~~iP~LRR-~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~-~lP~~LSGGEQQRva 147 (223)
T COG2884 72 --REIPFLRR-QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKAR-ALPSQLSGGEQQRVA 147 (223)
T ss_pred --cccchhhh-eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhh-cCccccCchHHHHHH
Confidence 34445776 999999999999999999999876544332 2233467888999999998766 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||++.+|++||.|| +|||....+|++++.++ ...|+||+|.|||.++ +..+..+++.+++
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei---nr~GtTVl~ATHd~~l--v~~~~~rvl~l~~ 212 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI---NRLGTTVLMATHDLEL--VNRMRHRVLALED 212 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH---hhcCcEEEEEeccHHH--HHhccCcEEEEeC
Confidence 9999999999999999 99999999999999999 4579999999998777 8888888888876
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-52 Score=403.55 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=188.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||+|.|++.. +|+++||+|++||+++|+||||||||||||+|+||++ ++|+|.|+|+++.+.++.
T Consensus 3 ~i~l~~v~K~yg~~~------~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--- 73 (338)
T COG3839 3 ELELKNVRKSFGSFE------VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--- 73 (338)
T ss_pred EEEEeeeEEEcCCce------eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh---
Confidence 678999999997653 4999999999999999999999999999999999999 999999999998865432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.|.|+||||++.|||+|||++|+.+.....+ .....++++.++++.++|.+.++ ++|.+||||||||||
T Consensus 74 ---------~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-r~P~~LSGGQrQRVA 143 (338)
T COG3839 74 ---------KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-RKPLQLSGGQRQRVA 143 (338)
T ss_pred ---------HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-cCcccCChhhHHHHH
Confidence 1589999999999999999999987654332 22334577889999999998776 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|+++|||| +||...+..+...|+++ +++.|.|+|+||| +..++..++|+|++|++ ...++|.
T Consensus 144 laRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l--h~~l~~T~IYVTH--Dq~EAmtladri~Vm~~G~i~Q~g~p~ 219 (338)
T COG3839 144 LARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL--HERLGTTTIYVTH--DQVEAMTLADRIVVMNDGRIQQVGTPL 219 (338)
T ss_pred HHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH--HHhcCCcEEEEcC--CHHHHHhhCCEEEEEeCCeeeecCChH
Confidence 9999999999999999 89999999999999998 3667999999999 45559999999999986 4566777
Q ss_pred ceeeEEE
Q 016817 298 GVYDIVC 304 (382)
Q Consensus 298 ~v~~~~~ 304 (382)
++|+.|.
T Consensus 220 ely~~P~ 226 (338)
T COG3839 220 ELYERPA 226 (338)
T ss_pred HHhhCcc
Confidence 7886554
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=391.25 Aligned_cols=228 Identities=16% Similarity=0.085 Sum_probs=196.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++.. +|+|+||+|++||+++|+||||||||||||+|+|+++ .+|+|+++|+++.+++.
T Consensus 2 ~L~~~~ls~~y~~~~------il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~---- 71 (258)
T COG1120 2 MLEVENLSFGYGGKP------ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP---- 71 (258)
T ss_pred eeEEEEEEEEECCee------EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH----
Confidence 578899999997433 6999999999999999999999999999999999999 89999999998765432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh---c--CccccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS---E--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
++.+ +.++|++|.+...+.+||+|.+...+..+. . ...+.+.+.++++.+|+.++.. |...+||||||
T Consensus 72 --kelA----k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-r~~~~LSGGer 144 (258)
T COG1120 72 --KELA----KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-RPVDELSGGER 144 (258)
T ss_pred --HHHh----hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-CcccccChhHH
Confidence 2322 489999999776667999999987754321 1 2223456888999999997765 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
|||.|||||+++|++||||| +||..++.+++++++++. +++|+|||+|+||+++ +.++||++++|++ +..
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~--~~~~~tvv~vlHDlN~--A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN--REKGLTVVMVLHDLNL--AARYADHLILLKDGKIVAQ 220 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEECCeEEee
Confidence 99999999999999999999 999999999999999994 6779999999999888 9999999999997 778
Q ss_pred ccccceeeEEEecc-ccCCCCc
Q 016817 294 SEISGVYDIVCLTE-YGFPAEE 314 (382)
Q Consensus 294 ~~~~~v~~~~~l~~-~~~~~~~ 314 (382)
|.|+++++.+.+++ |+++...
T Consensus 221 G~p~evlT~e~l~~Vygv~~~~ 242 (258)
T COG1120 221 GTPEEVLTEENLREVYGVDADV 242 (258)
T ss_pred cCcchhcCHHHHHHHhCCceEE
Confidence 88899999999888 9987543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=373.09 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=183.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++||++.|+++.. +|+||||+|++||+++||||||||||||||+|+|+.+ ++|+|.++|.++..
T Consensus 2 ~~i~~~nl~k~yp~~~~-----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~------ 70 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ-----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITK------ 70 (258)
T ss_pred ceEEEeeeeeecCCCce-----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhc------
Confidence 47899999999975542 7999999999999999999999999999999999999 89999999986643
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh--------hh-cCccccccccccCccccccccccccccCCC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW--------MS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~--------~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
+...+++.+|+ ++||+||+++|.+.++|.+|+...... ++ ....++.++.++|+++|+.+... ++.++|
T Consensus 71 ~~~k~lr~~r~-~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-qra~~L 148 (258)
T COG3638 71 LKGKELRKLRR-DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-QRASTL 148 (258)
T ss_pred cchHHHHHHHH-hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-HHhccC
Confidence 33456677886 999999999999999999999775421 11 12234456778999999998876 899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+++|+++|.|| +|||.+.+.+++.|++++ ++.|.|+|+..|++++ +.+||+||+-|++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in--~~~g~Tvi~nLH~vdl--A~~Y~~Riigl~~ 223 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDIN--QEDGITVIVNLHQVDL--AKKYADRIIGLKA 223 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHH--HHcCCEEEEEechHHH--HHHHHhhheEecC
Confidence 9999999999999999999999999 999999999999999994 7789999999997777 9999999999987
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=361.00 Aligned_cols=219 Identities=16% Similarity=0.129 Sum_probs=186.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~ 137 (382)
...++++|+++.|+... +|+|||++|++++++|||||||||||||||+++++.+ . +|+|.++|+++.+
T Consensus 5 ~~~~~~~~l~~yYg~~~------aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH------ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECchh------hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 45688999999997654 7999999999999999999999999999999999986 3 6999999998764
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccc---cccCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEI---DDLKS 213 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~---~~~~~ 213 (382)
.. .+..++|+ ++|||||.|+.|| +|++||+.++.+..+ ....-++.+++.|+.+.|.+...| +.+..
T Consensus 79 ~~-------~d~~~lRr-~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~ 149 (253)
T COG1117 79 PK-------VDVVELRR-RVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALG 149 (253)
T ss_pred CC-------CCHHHHHH-HheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccC
Confidence 32 23345776 9999999999999 999999998876554 222334678888999988764433 56788
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||++|||||+.+|+|||||| +|||.+...|.++|.+| + +..|||+|||+|.. +.+++|+..++..
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL---k-~~yTIviVTHnmqQ--AaRvSD~taFf~~ 223 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL---K-KKYTIVIVTHNMQQ--AARVSDYTAFFYL 223 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH---H-hccEEEEEeCCHHH--HHHHhHhhhhhcc
Confidence 99999999999999999999999999 99999999999999999 3 56899999996666 9999999887765
Q ss_pred ---cccccccceeeEE
Q 016817 291 ---LGVSEISGVYDIV 303 (382)
Q Consensus 291 ---~~~~~~~~v~~~~ 303 (382)
+..++++++|+.|
T Consensus 224 G~LvE~g~T~~iF~~P 239 (253)
T COG1117 224 GELVEFGPTDKIFTNP 239 (253)
T ss_pred cEEEEEcCHHhhhcCc
Confidence 7888899999765
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=379.52 Aligned_cols=219 Identities=16% Similarity=0.133 Sum_probs=184.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++|++++|+++. ||+||||+|++|++++|+||||||||||+|+|+|+++ .+|+|.++|++......
T Consensus 3 ~~i~v~nl~v~y~~~~------vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--- 73 (254)
T COG1121 3 PMIEVENLTVSYGNRP------VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--- 73 (254)
T ss_pred cEEEEeeeEEEECCEe------eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---
Confidence 4789999999997542 5999999999999999999999999999999999999 89999999986543221
Q ss_pred ehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh----hh-cCccccccccccCccccccccccccccCCCc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW----MS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~----~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
+ .+||||||.. .-|| .||+|.+...... +. ....+++.+.++|+++|+.++. ++.+.+||
T Consensus 74 ---------~-~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-~r~i~~LS 141 (254)
T COG1121 74 ---------R-LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-DRQIGELS 141 (254)
T ss_pred ---------C-CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-CCcccccC
Confidence 1 3799999954 3466 8999999765321 11 1223457889999999999765 49999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY-- 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~-- 290 (382)
|||+|||.|||||+++|++|+||| ++|+.++..+.++|+++ +++|+||+|||||+.. +..++|+|++++.
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l---~~eg~tIl~vtHDL~~--v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL---RQEGKTVLMVTHDLGL--VMAYFDRVICLNRHL 216 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCcHH--hHhhCCEEEEEcCee
Confidence 999999999999999999999999 99999999999999999 3349999999997776 9999999999998
Q ss_pred cccccccceeeEEEecc-cc
Q 016817 291 LGVSEISGVYDIVCLTE-YG 309 (382)
Q Consensus 291 ~~~~~~~~v~~~~~l~~-~~ 309 (382)
+..++++++++.+.+.. |+
T Consensus 217 ~~~G~~~~~~~~~~l~~~~g 236 (254)
T COG1121 217 IASGPPEEVLTEENLEKAFG 236 (254)
T ss_pred EeccChhhccCHHHHHHHhC
Confidence 77888888887666544 54
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=379.18 Aligned_cols=220 Identities=15% Similarity=0.090 Sum_probs=185.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|+++.|+.-. +++||||+|+.||.+||+||||||||||||+|+||+. ++|+|.++|+.+.+.+..
T Consensus 2 ~i~i~~~~~~~~~~~------a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--- 72 (345)
T COG1118 2 SIRINNVKKRFGAFG------ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--- 72 (345)
T ss_pred ceeehhhhhhccccc------ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc---
Confidence 578899999997654 7999999999999999999999999999999999999 899999999944433221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC--ccccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG--VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~--~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..|.++||||||++.||+++||.+||.+...... .. ...+.++.++|+.+.|+... ++||.+||||||||
T Consensus 73 ------~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-~ryP~QLSGGQrQR 145 (345)
T COG1118 73 ------AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-DRYPAQLSGGQRQR 145 (345)
T ss_pred ------chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-hcCchhcChHHHHH
Confidence 1333689999999999999999999988653221 11 22345678889999999664 59999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
||+||||+.+|++||||| +||..-+.++...|+++. .+.|.|+++||||+ +++.+.+|+|++|++ ...++
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~--~~~~~ttvfVTHD~--eea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH--DRLGVTTVFVTHDQ--EEALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH--HhhCceEEEEeCCH--HHHHhhcceEEEecCCeeeeeCC
Confidence 999999999999999999 999999999999999983 55699999999955 459999999999998 34567
Q ss_pred ccceeeEEEe
Q 016817 296 ISGVYDIVCL 305 (382)
Q Consensus 296 ~~~v~~~~~l 305 (382)
+.++|+.|.-
T Consensus 222 p~ev~~~P~s 231 (345)
T COG1118 222 PDEVYDHPAS 231 (345)
T ss_pred HHHHhcCCCc
Confidence 7778876554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-50 Score=365.98 Aligned_cols=221 Identities=18% Similarity=0.153 Sum_probs=187.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+.+.|++++|+++|++.. +++|+||+|++||+++|+||||||||||+|+|.|+++ ++|+|+++|+++...+
T Consensus 5 ~~~~I~vr~v~~~fG~~~------Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls-- 76 (263)
T COG1127 5 PEPLIEVRGVTKSFGDRV------ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLS-- 76 (263)
T ss_pred CcceEEEeeeeeecCCEE------EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccC--
Confidence 356899999999996543 6999999999999999999999999999999999999 8999999999876443
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc---ccccccccCccccccccccccccCCCccce
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH---HNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
..++.++|+ ++|++||+..||..+||+||+.+....+. ..+ .++.+..-++.+||.....+++|++|||||
T Consensus 77 ----~~~~~~ir~-r~GvlFQ~gALFssltV~eNVafplre~~-~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM 150 (263)
T COG1127 77 ----EEELYEIRK-RMGVLFQQGALFSSLTVFENVAFPLREHT-KLPESLIRELVLMKLELVGLRGAAADLYPSELSGGM 150 (263)
T ss_pred ----HHHHHHHHh-heeEEeeccccccccchhHhhheehHhhc-cCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchH
Confidence 344555776 89999999999999999999987543322 111 123445568899998774569999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
++||+|||||+.+|+||++|| ||||.+...+-++|+++ +..-|.|++||||| ++++..+||+++++.+ +.
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L--~~~lg~T~i~VTHD--l~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIREL--NDALGLTVIMVTHD--LDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH--HHhhCCEEEEEECC--hHHHHhhhceEEEEeCCEEEE
Confidence 999999999999999999999 99999999999999999 36679999999995 4559999999999987 66
Q ss_pred cccccceee
Q 016817 293 VSEISGVYD 301 (382)
Q Consensus 293 ~~~~~~v~~ 301 (382)
.++++++..
T Consensus 227 ~Gt~~el~~ 235 (263)
T COG1127 227 EGTPEELLA 235 (263)
T ss_pred eCCHHHHHh
Confidence 677766663
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=366.04 Aligned_cols=220 Identities=17% Similarity=0.113 Sum_probs=183.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|+++.|+.+.... ++|++|||+|.+||++||+|+||||||||.|+|+|+.+ ++|+|+++|+++......
T Consensus 2 ~~l~v~nl~~~y~~~~~~~--~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~-- 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAF--HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRA-- 77 (252)
T ss_pred ceEEEeceEEEecCCcchh--hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccc--
Confidence 3788999999998665322 37999999999999999999999999999999999999 899999999865422111
Q ss_pred ehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+ +.+.||||||. +.|..||.+.+.+.....+. ....+++.++++.+||.+.+.+++|++|||||+||
T Consensus 78 ------~~~~-~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~-~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 78 ------KAFY-RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL-SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred ------hhhc-cceeEEecCCccccCcchhHHHHHhhhhccCCc-cHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 0123 48999999974 78999999998775432111 12234588899999998877779999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|||||||+.+|++||||| +||+..+.+|+++|.++ +++++.|.||||||+.+ +.++||||++|++ +...+
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l--~~~~~lt~l~IsHdl~~--v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL--KKERGLTYLFISHDLAL--VEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH--HHhcCceEEEEeCcHHH--HHHHhhheeeeeCCeEEEeec
Confidence 999999999999999999 99999999999999999 47789999999998887 9999999999998 55555
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
..+++
T Consensus 226 ~~~l~ 230 (252)
T COG1124 226 TEELL 230 (252)
T ss_pred hhhhh
Confidence 55555
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=390.15 Aligned_cols=222 Identities=14% Similarity=0.121 Sum_probs=181.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++|++++|+.++... ++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 mI~~~~lsk~y~~~~~~~--~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~----- 73 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTI--QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLS----- 73 (343)
T ss_pred CEEEEEEEEEECCCCcce--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-----
Confidence 578999999996432111 16999999999999999999999999999999999999 8999999999765332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+....|+ +|||+||++.+|+..|+.+|+.+.....+. .....+++.++++.+||.+..+ ++|.+|||||||||+
T Consensus 74 -~~~l~~~r~-~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 74 -NSELTKARR-QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-SYPSNLSGGQKQRVA 150 (343)
T ss_pred -HHHHHHHhc-CEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHH
Confidence 223333454 899999999999999999999765322111 1112345678899999987654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +.++||++++|++ +..+++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~--~~~g~tiiliTH~~~~--v~~~~d~v~vl~~G~iv~~g~~~ 226 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEIN--RRLGLTILLITHEMDV--VKRICDCVAVISNGELIEQGTVS 226 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 4458999999996666 9999999999987 5556666
Q ss_pred ceee
Q 016817 298 GVYD 301 (382)
Q Consensus 298 ~v~~ 301 (382)
+++.
T Consensus 227 ~v~~ 230 (343)
T TIGR02314 227 EIFS 230 (343)
T ss_pred HHHc
Confidence 6664
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=326.82 Aligned_cols=211 Identities=16% Similarity=0.095 Sum_probs=181.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..|++++++++.+.+...++ +|++|+|.|++||.+|||||||||||||+-+++||.. ++|+|++.|+++..+
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~--IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~l----- 77 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELS--ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL----- 77 (228)
T ss_pred ceeehhhhhhhhcCCCccee--EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhc-----
Confidence 37899999999987765553 7999999999999999999999999999999999999 899999999976533
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....++.+|.+++|||||.+.|.|++|..||+.......+... .....+.+.++.+||.+.+. .||.+|||||||||
T Consensus 78 -dEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~-HyP~qLSGGEQQRV 155 (228)
T COG4181 78 -DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-HYPAQLSGGEQQRV 155 (228)
T ss_pred -CHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc-cCccccCchHHHHH
Confidence 3456677888899999999999999999999976543332212 22345778899999998876 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+||||++..|+||+.|| +||..+-.+|.++|-.+ +++.|+|.|+||||+.+ +.++ +|.+-|.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l--nre~G~TlVlVTHD~~L--A~Rc-~R~~r~~ 220 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL--NRERGTTLVLVTHDPQL--AARC-DRQLRLR 220 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH--hhhcCceEEEEeCCHHH--HHhh-hheeeee
Confidence 99999999999999999 99999999999999998 48899999999998888 7764 4444443
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=330.47 Aligned_cols=227 Identities=12% Similarity=0.071 Sum_probs=192.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc----
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~---- 138 (382)
.+.++++|+.|+|+... +|++|||+.++|+++.|||.|||||||+||||+=|.. +.|.|.++|+.+.-.
T Consensus 4 ~~~l~v~dlHK~~G~~e------VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 4 ENALEVEDLHKRYGEHE------VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ccceehhHHHhhcccch------hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCC
Confidence 45789999999997665 7999999999999999999999999999999999988 799999999876421
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHh-hhh-cCccccccccccCccccccccccccccCCCcc
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS-WMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
........++...+|. +.|||||+++|++++|+.||+.+... .++ .+....++++.+|.++|+.+..+ .||..|||
T Consensus 78 G~l~~ad~~q~~r~Rs-~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSG 155 (256)
T COG4598 78 GQLKPADKRQLQRLRT-RLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSG 155 (256)
T ss_pred CCeeeCCHHHHHHHHH-HhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCc
Confidence 1222334567777887 89999999999999999999977542 222 11222356677899999997765 99999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
|||||++|||||+++|+++|+|| +|||+...++++.++++ .+.|+|+++|||.|.+ +...+..|+++++
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L---AeEgrTMv~VTHEM~F--AR~Vss~v~fLh~G~i 230 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL---AEEGRTMVVVTHEMGF--ARDVSSHVIFLHQGKI 230 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH---HHhCCeEEEEeeehhH--HHhhhhheEEeeccee
Confidence 99999999999999999999999 99999999999999999 4679999999997777 9999999999988
Q ss_pred cccccccceeeEE
Q 016817 291 LGVSEISGVYDIV 303 (382)
Q Consensus 291 ~~~~~~~~v~~~~ 303 (382)
-..|+|+++|..|
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 4567888898543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=356.78 Aligned_cols=207 Identities=18% Similarity=0.178 Sum_probs=181.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
.++|+||+|++||++.|+|-||||||||+|+|+||++ ++|+|+++|.++.. +...++..+|+++++||||++.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~------~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK------LSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhc------CCHHHHHHHHhhhhhhhhhhhc
Confidence 5899999999999999999999999999999999999 89999999997753 3456777889889999999999
Q ss_pred CCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 166 GFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+|+.||.+|+.+.....+ .....++++.++++.+||..+. ++||++|||||||||.|||||+.+|+|||+|| +|
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~-~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSAL 195 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA-DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL 195 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhc
Confidence 9999999999987654333 2223345678889999999765 49999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceeeEEE
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYDIVC 304 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~~~~ 304 (382)
||--+.++++.|.++ +++.++||++|||| ++++.++.+||.+|++ +..|.|++++..|.
T Consensus 196 DPLIR~~mQdeLl~L--q~~l~KTIvFitHD--LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 196 DPLIRTEMQDELLEL--QAKLKKTIVFITHD--LDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ChHHHHHHHHHHHHH--HHHhCCeEEEEecC--HHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 999999999999998 46678999999995 5559999999999998 66677788886654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=376.50 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=181.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+.+.
T Consensus 4 ~~~l~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~-- 75 (351)
T PRK11432 4 KNFVVLKNITKRFGSN--T----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI-- 75 (351)
T ss_pred CcEEEEEeEEEEECCe--E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--
Confidence 4588999999999642 2 5999999999999999999999999999999999999 89999999997753221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+ +.+|||||++.+|+++||.+|+.+........ ....+++.++++.+++.+.. +++|.+||||||||
T Consensus 76 ---------~~-r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-~r~~~~LSgGq~QR 144 (351)
T PRK11432 76 ---------QQ-RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-DRYVDQISGGQQQR 144 (351)
T ss_pred ---------HH-CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHH
Confidence 12 48999999999999999999998754221111 11235677889999998765 49999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+..+..+.+.|+++. ++.|+|+|+||||++. +..+||+|++|++ +..++
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tii~vTHd~~e--~~~laD~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ--QQFNITSLYVTHDQSE--AFAVSDTVIVMNKGKIMQIGS 220 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999 999999999999999983 4568999999995554 9999999999987 45566
Q ss_pred ccceeeEE
Q 016817 296 ISGVYDIV 303 (382)
Q Consensus 296 ~~~v~~~~ 303 (382)
+++++..|
T Consensus 221 ~~~~~~~p 228 (351)
T PRK11432 221 PQELYRQP 228 (351)
T ss_pred HHHHHhCC
Confidence 66666543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=377.54 Aligned_cols=216 Identities=14% Similarity=0.073 Sum_probs=179.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+.+.
T Consensus 3 ~l~i~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---- 73 (356)
T PRK11650 3 GLKLQAVRKSYDGKT-Q----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---- 73 (356)
T ss_pred EEEEEeEEEEeCCCC-E----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH----
Confidence 578999999994222 2 5999999999999999999999999999999999999 89999999997753221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+|||||++.+|+++||++|+.+........ ....+++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 74 -------~~-r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~QRva 144 (356)
T PRK11650 74 -------AD-RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-RKPRELSGGQRQRVA 144 (356)
T ss_pred -------HH-CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHH
Confidence 12 38999999999999999999997754221111 112345778899999987654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|+||||++. +..+||++++|++ +..++++
T Consensus 145 lARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tii~vTHd~~e--a~~l~D~i~vl~~G~i~~~g~~~ 220 (356)
T PRK11650 145 MGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH--RRLKTTSLYVTHDQVE--AMTLADRVVVMNGGVAEQIGTPV 220 (356)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEeCCEEEEECCHH
Confidence 9999999999999999 999999999999999983 4458999999995554 9999999999987 4456666
Q ss_pred ceeeEE
Q 016817 298 GVYDIV 303 (382)
Q Consensus 298 ~v~~~~ 303 (382)
+++..+
T Consensus 221 ~~~~~p 226 (356)
T PRK11650 221 EVYEKP 226 (356)
T ss_pred HHHhCC
Confidence 676543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=389.28 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=207.1
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhh-h-----hc-CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-A-----LI-APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
....++..++.+.+++-++..+.+|+.++++.+|. + .+ ...+.|+|+||+|+|+..... ++|+|+||+|+
T Consensus 416 ~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~---~Vlk~lsfti~ 492 (716)
T KOG0058|consen 416 QLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDV---PVLKNLSFTIR 492 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCc---hhhcCceeeeC
Confidence 34567788889999999999999999999999874 1 11 245789999999999876432 37999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||++|||||||+||||++++|.++|+ ++|+|.+||+|+.++... .+|+ +||+|-|+|.||. .||+||
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~---------~lr~-~Ig~V~QEPvLFs-~sI~eN 561 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHK---------YLRR-KIGLVGQEPVLFS-GSIREN 561 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHH---------HHHH-Heeeeeccceeec-ccHHHH
Confidence 999999999999999999999999999 899999999998766543 2665 9999999999998 899999
Q ss_pred HHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|.+.. ....++++.++.++.+..+++. ..|. +||||||||+||||||+++|.|||||| +|
T Consensus 562 I~YG~-----~~~t~e~i~~AAk~ANah~FI~-~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 562 IAYGL-----DNATDEEIEAAAKMANAHEFIT-NFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSAL 635 (716)
T ss_pred HhcCC-----CCCCHHHHHHHHHHhChHHHHH-hCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhc
Confidence 96542 3455677888888877766554 3333 599999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|.+++..+.+.|.++. +++|||+|+| +++++++ +|+|+++++ ...|.-++.+
T Consensus 636 DaeSE~lVq~aL~~~~----~~rTVlvIAH--RLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 636 DAESEYLVQEALDRLM----QGRTVLVIAH--RLSTVRH-ADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred chhhHHHHHHHHHHhh----cCCeEEEEeh--hhhHhhh-ccEEEEEcCCeEEecccHHHHh
Confidence 9999999999999874 5799999999 9988886 556666665 4445444454
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=331.10 Aligned_cols=200 Identities=17% Similarity=0.117 Sum_probs=170.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|+.+++|.++|+.-. . .++++|+.||++||+||||||||||+|+|+|++. .+|+|+++|++....++
T Consensus 1 ~l~L~~V~~~y~~~~--~------~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---- 68 (231)
T COG3840 1 MLALDDVRFSYGHLP--M------RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP---- 68 (231)
T ss_pred CccccceEEeeCcce--E------EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc----
Confidence 467788999995432 1 4588999999999999999999999999999999 89999999998754332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh-hhcCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW-MSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
++ +-++++||+++||.++||.+|+...... +.-...++++++.++.++||..+.+ +.|.+||||||||||
T Consensus 69 -------~~-RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~-RLP~~LSGGqRQRvA 139 (231)
T COG3840 69 -------AE-RPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVA 139 (231)
T ss_pred -------cc-CChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh-hCccccCchHHHHHH
Confidence 22 3799999999999999999999654321 1111234567888999999998765 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|+++-+|||||| +|||.-+.+++.++.+++ .+++.|++|||| ..+++.+++++++++++
T Consensus 140 LARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~--~E~~~TllmVTH--~~~Da~~ia~~~~fl~~ 205 (231)
T COG3840 140 LARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC--DERKMTLLMVTH--HPEDAARIADRVVFLDN 205 (231)
T ss_pred HHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH--HhhCCEEEEEeC--CHHHHHHhhhceEEEeC
Confidence 9999999999999999 999999999999999995 778999999999 66669999999999987
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=350.75 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=182.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|+++ .. +|+++||+|++|++++|+||||||||||+++++|+++ ++|+|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~-~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~------ 70 (235)
T COG1122 2 RMIEAENLSFRYPGR-KA----ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS------ 70 (235)
T ss_pred ceEEEEEEEEEcCCC-ce----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc------
Confidence 367889999999876 22 6999999999999999999999999999999999999 89999999987542
Q ss_pred ehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
......+|+ ++|||||+| .+|. -||.+.+.+....++... ..++++.++++.+|+.+..+ +.|++|||||||
T Consensus 71 --~~~~~~~~~-~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-r~p~~LSGGqkq 145 (235)
T COG1122 71 --EKSLLELRQ-KVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-RPPFNLSGGQKQ 145 (235)
T ss_pred --hhhHHHhhc-ceEEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-CCccccCCccee
Confidence 112233555 899999997 4554 799999987765443222 23467888999999998754 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|||||.+|+++|++||||| +||+..+..+++.++++. .+.|+|+|++|||++. +..+||++++|++ +..+
T Consensus 146 RvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~--~~~~~tii~~tHd~~~--~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK--EEGGKTIIIVTHDLEL--VLEYADRVVVLDDGKILADG 221 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH--hcCCCeEEEEeCcHHH--HHhhCCEEEEEECCEEeecC
Confidence 9999999999999999999 999999999999999993 4457999999997766 9999999999987 4566
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
.+.++|.
T Consensus 222 ~p~~i~~ 228 (235)
T COG1122 222 DPAEIFN 228 (235)
T ss_pred CHHHHhh
Confidence 6666764
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=375.42 Aligned_cols=216 Identities=11% Similarity=0.058 Sum_probs=180.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+...
T Consensus 3 ~~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--- 73 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFT------ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--- 73 (353)
T ss_pred cEEEEEEEEEEeCCeE------EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH---
Confidence 3688999999996432 5999999999999999999999999999999999999 89999999997653221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.+ +.+||+||++.+||++||.+|+.+....... .....+++.++++.++|.+.++ ++|.+|||||||||
T Consensus 74 --------~~-r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-~~~~~LSgGq~QRv 143 (353)
T TIGR03265 74 --------QK-RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-KYPGQLSGGQQQRV 143 (353)
T ss_pred --------HH-CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-CChhhCCHHHHHHH
Confidence 12 3899999999999999999999775422111 1112356788999999987655 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+..+..+.+.|+++. ++.|.|+|+||||++ ++..+||++++|++ +..+++
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~--~~~~~tvi~vTHd~~--ea~~l~d~i~vl~~G~i~~~g~~ 219 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ--RRLGVTTIMVTHDQE--EALSMADRIVVMNHGVIEQVGTP 219 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHH--HHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999 999999999999999983 556899999999555 49999999999987 455666
Q ss_pred cceeeEE
Q 016817 297 SGVYDIV 303 (382)
Q Consensus 297 ~~v~~~~ 303 (382)
.+++..+
T Consensus 220 ~~~~~~p 226 (353)
T TIGR03265 220 QEIYRHP 226 (353)
T ss_pred HHHHhCC
Confidence 6676543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=346.47 Aligned_cols=223 Identities=17% Similarity=0.138 Sum_probs=189.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+++++++++++|++-. +++||||+|++||+++||||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~lL~v~~l~k~FGGl~------Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p--- 73 (250)
T COG0411 3 PLLEVRGLSKRFGGLT------AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP--- 73 (250)
T ss_pred ceeeeccceeecCCEE------EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCH---
Confidence 4678999999996433 6999999999999999999999999999999999999 89999999998765442
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-------hcC------ccccccccccCccccccccccccc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-------SEG------VHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-------~~~------~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
.+. .| ..|+-.||.+.+|+.+||.||+....... +.+ ....+++.++|+.+||.+..+ ++
T Consensus 74 ---~~i--ar-~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~-~~ 146 (250)
T COG0411 74 ---HRI--AR-LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD-RP 146 (250)
T ss_pred ---HHH--Hh-ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc-ch
Confidence 222 23 37889999999999999999997653211 100 112255677899999997765 99
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
..+||+|||+|+.|||||+.+|++||||| ++.+....++.+.|+++. ++.|.||++|.|||++ +..+||||++
T Consensus 147 A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~--~~~g~tillIEHdM~~--Vm~l~dri~V 222 (250)
T COG0411 147 AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR--DRGGVTILLIEHDMKL--VMGLADRIVV 222 (250)
T ss_pred hhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHH--hcCCcEEEEEEeccHH--HhhhccEEEe
Confidence 99999999999999999999999999999 999999999999999993 4467999999999888 9999999999
Q ss_pred hhh---cccccccceeeEEEecc
Q 016817 288 CEY---LGVSEISGVYDIVCLTE 307 (382)
Q Consensus 288 l~~---~~~~~~~~v~~~~~l~~ 307 (382)
|+. +..|+|++|.++|.+.+
T Consensus 223 l~~G~~IAeG~P~eV~~dp~Vie 245 (250)
T COG0411 223 LNYGEVIAEGTPEEVRNNPRVIE 245 (250)
T ss_pred ccCCcCcccCCHHHHhcCHHhHH
Confidence 987 88899999987765544
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=374.60 Aligned_cols=218 Identities=16% Similarity=0.086 Sum_probs=181.4
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 11 ~~~~L~l~~l~~~~~~~~------~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~- 83 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE------VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA- 83 (375)
T ss_pred CCceEEEEEEEEEECCeE------EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-
Confidence 456799999999996422 5999999999999999999999999999999999999 89999999997643221
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.+ +.+||+||++.+|+++||.+|+.+.....+.. ....+++.++++.++|.+..+ ++|.+|||||||
T Consensus 84 ----------~~-r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~p~~LSgGq~Q 151 (375)
T PRK09452 84 ----------EN-RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-RKPHQLSGGQQQ 151 (375)
T ss_pred ----------HH-CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHH
Confidence 12 37999999999999999999997653211111 111345677899999987655 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+..+..+.+.|+++. ++.|.|+|+||||++. +..++|++++|++ ...+
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~--~~~g~tiI~vTHd~~e--a~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ--RKLGITFVFVTHDQEE--ALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999 999999999999999983 4568999999996555 9999999999987 4456
Q ss_pred cccceeeEE
Q 016817 295 EISGVYDIV 303 (382)
Q Consensus 295 ~~~~v~~~~ 303 (382)
++.+++..|
T Consensus 228 ~~~~i~~~p 236 (375)
T PRK09452 228 TPREIYEEP 236 (375)
T ss_pred CHHHHHhCc
Confidence 666676544
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=396.08 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=210.3
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh--------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
+++.|+..++.+..+++....+.+|+.++++.+++.. +.-.+.|+++||+|+|+....+ +|+|+||+|
T Consensus 421 ~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~----vL~~isL~I 496 (709)
T COG2274 421 YFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPP----VLEDLSLEI 496 (709)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcc----hhhceeEEe
Confidence 5789999999999999999999999999999987621 1224579999999999876533 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||++||+|+||||||||+|+|.|+++ ++|+|++||.|+.+.. ...+|+ +||||+||+.+|. .|++|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~---------~~~lR~-~ig~V~Q~~~Lf~-gSI~e 565 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID---------LASLRR-QVGYVLQDPFLFS-GSIRE 565 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcC---------HHHHHh-heeEEcccchhhc-CcHHH
Confidence 9999999999999999999999999999 8999999999876443 233676 9999999999998 89999
Q ss_pred hHHHHHhhhhcCccccccccccCccccccccccccccCC-----------CccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------SPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+... .+....+++.++++..|+.+++. +.|.+ ||||||||++|||||+++|+|||||| +
T Consensus 566 Ni~l~-----~p~~~~e~i~~A~~~ag~~~fI~-~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSa 639 (709)
T COG2274 566 NIALG-----NPEATDEEIIEAAQLAGAHEFIE-NLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSA 639 (709)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHhCcHHHHH-hcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 99542 34445577888888888887766 55543 99999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.+++.|.+.|.++. .|+|+|+||| +++++. .||+|++|++ +..++.++++
T Consensus 640 LD~~sE~~I~~~L~~~~----~~~T~I~IaH--Rl~ti~-~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 640 LDPETEAIILQNLLQIL----QGRTVIIIAH--RLSTIR-SADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred cCHhHHHHHHHHHHHHh----cCCeEEEEEc--cchHhh-hccEEEEccCCceeccCCHHHHH
Confidence 99999999999999984 6899999999 666565 6778888876 5555554444
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=371.79 Aligned_cols=215 Identities=14% Similarity=0.087 Sum_probs=178.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc--ceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS--GLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~--G~I~i~G~~i~~~~~~~ 142 (382)
.++++||+++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++ |+|.++|+++.+...
T Consensus 5 ~l~~~~l~~~~~~~--~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~-- 76 (362)
T TIGR03258 5 GIRIDHLRVAYGAN--T----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP-- 76 (362)
T ss_pred EEEEEEEEEEECCe--E----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--
Confidence 57889999999643 2 5999999999999999999999999999999999999 89 999999997643211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+ +.+||+||++.+|+++||++|+.+........ ....+++.++++.++|.+..+ ++|.+||||||||
T Consensus 77 ---------~~-r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSgGq~QR 145 (362)
T TIGR03258 77 ---------HK-RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-HLPAQLSGGMQQR 145 (362)
T ss_pred ---------HH-CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-CChhhCCHHHHHH
Confidence 12 38999999999999999999997654221111 112345778899999987654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccC-CCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCN-ENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~-g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|+|||||+.+|++||||| +||+..+..+.+.|+++. ++. |.|+|+||||++. +..+||+|++|++ +..+
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~--~~~~g~til~vTHd~~e--a~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH--EELPELTILCVTHDQDD--ALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HhCCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999 999999999999999983 443 8999999995555 9999999999987 4556
Q ss_pred cccceeeEE
Q 016817 295 EISGVYDIV 303 (382)
Q Consensus 295 ~~~~v~~~~ 303 (382)
++++++..+
T Consensus 222 ~~~~~~~~p 230 (362)
T TIGR03258 222 EPQALYDAP 230 (362)
T ss_pred CHHHHHhCc
Confidence 666676543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=352.79 Aligned_cols=224 Identities=14% Similarity=0.140 Sum_probs=188.6
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCccc
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNSSH 140 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~~~ 140 (382)
++++|++.+|......+ .+++||||+|++||++||||.|||||||+.+.|+|+++ + +|+|.|+|+++...+
T Consensus 2 L~v~nL~v~f~~~~g~v--~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~- 78 (316)
T COG0444 2 LEVKNLSVSFPTDAGVV--KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS- 78 (316)
T ss_pred ceEeeeEEEEecCCccE--EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC-
Confidence 67899999997654333 27999999999999999999999999999999999996 3 689999999865433
Q ss_pred ceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC---ccccccccccCcccccccc--ccccccCC
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG---VHHNQRCLRSDDCALMKND--AEIDDLKS 213 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~---~~~~~~~~~~l~~~~L~~~--~~~~~~~~ 213 (382)
..+...+|.+.|+|+|||+ .|.|.+||.+.+.+........ ....+++.++|+.+|+.+. ..+.||++
T Consensus 79 -----~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe 153 (316)
T COG0444 79 -----EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE 153 (316)
T ss_pred -----HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence 3345568888999999996 5788999999887765433211 1123567889999999853 44699999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||.||.||+.+|++||+|| +||...+.+|+++|+++. ++.|+|+|+||||+.+ +.++||+|.+|..
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~--~e~~~aiilITHDl~v--va~~aDri~VMYa 229 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ--REKGTALILITHDLGV--VAEIADRVAVMYA 229 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcceEEEEEC
Confidence 99999999999999999999999999 999999999999999993 6789999999998888 9999999999987
Q ss_pred ---cccccccceeeE
Q 016817 291 ---LGVSEISGVYDI 302 (382)
Q Consensus 291 ---~~~~~~~~v~~~ 302 (382)
+..++..++|..
T Consensus 230 G~iVE~g~~~~i~~~ 244 (316)
T COG0444 230 GRIVEEGPVEEIFKN 244 (316)
T ss_pred cEEEEeCCHHHHhcC
Confidence 777888888854
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=341.10 Aligned_cols=208 Identities=17% Similarity=0.152 Sum_probs=169.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+++... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----- 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQP----ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLR----- 71 (216)
T ss_pred CeEEEEEEEEecCCCee----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcC-----
Confidence 46789999999643222 5999999999999999999999999999999999998 8999999998654221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
......+|+ .++|+||++.+|+.+|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+
T Consensus 72 -~~~~~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 72 -GREIPFLRR-HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-ALPMQLSGGEQQRVA 148 (216)
T ss_pred -hhHHHHHHH-hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHH
Confidence 111222444 8999999999998899999997643211111 112345677899999986654 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||+||||++. +..+||+++++++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~vsH~~~~--~~~~~d~i~~l~~ 213 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEF---NRRGTTVLVATHDINL--VETYRHRTLTLSR 213 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999 99999999999999998 3358999999996665 8888999988864
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-46 Score=370.14 Aligned_cols=217 Identities=15% Similarity=0.093 Sum_probs=180.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.+.+.
T Consensus 17 ~~~l~l~~v~~~~~~~--~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~-- 88 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ--H----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP-- 88 (377)
T ss_pred CceEEEEeEEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--
Confidence 4579999999999642 2 5999999999999999999999999999999999999 89999999997643221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+ +.+||+||++.+|+++||.+|+.+....... .....+++.++++.+++.+..+ ++|.+||||||||
T Consensus 89 ---------~~-r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~~~~LSgGq~QR 157 (377)
T PRK11607 89 ---------YQ-RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-RKPHQLSGGQRQR 157 (377)
T ss_pred ---------HH-CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHH
Confidence 23 3899999999999999999999765321111 1112345678899999987654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+..+..+.+.|+++. ++.|.|+|+||||++. +..++|++++|++ +..++
T Consensus 158 VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tii~vTHd~~e--a~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL--ERVGVTCVMVTHDQEE--AMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HHHhCCEEEEEeCCEEEEEcC
Confidence 999999999999999999 999999999999999883 4568999999995554 9999999999987 45566
Q ss_pred ccceeeEE
Q 016817 296 ISGVYDIV 303 (382)
Q Consensus 296 ~~~v~~~~ 303 (382)
+.+++..+
T Consensus 234 ~~~~~~~p 241 (377)
T PRK11607 234 PEEIYEHP 241 (377)
T ss_pred HHHHHhCC
Confidence 66666543
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=325.57 Aligned_cols=228 Identities=14% Similarity=0.074 Sum_probs=199.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||+|+|+... +|+++|++|++|.+++|+|||||||||||.++++|++ ++|+|+++|.++...+.
T Consensus 1 MI~i~nv~K~y~~~~------vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s---- 70 (252)
T COG4604 1 MITIENVSKSYGTKV------VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPS---- 70 (252)
T ss_pred CeeehhhhHhhCCEE------eeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCCh----
Confidence 688999999996543 6999999999999999999999999999999999999 99999999998765432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc---cccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV---HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
+.++ ++++.+-|++.....+||++-+.++++++..+. .++..+.++++.++|.+. .+++..+||||||||
T Consensus 71 --~~LA----k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l-~dryLd~LSGGQrQR 143 (252)
T COG4604 71 --KELA----KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL-SDRYLDELSGGQRQR 143 (252)
T ss_pred --HHHH----HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch-HHHhHHhcccchhhh
Confidence 3333 378889999888889999999998887765443 344668899999999965 569999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
.-||+.|+++.+.++||| +||.++...+++.|++++ .+.|+||++|-||+++ +..++|.|+-|++ +..|+
T Consensus 144 AfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla--~el~KtiviVlHDINf--AS~YsD~IVAlK~G~vv~~G~ 219 (252)
T COG4604 144 AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA--DELGKTIVVVLHDINF--ASCYSDHIVALKNGKVVKQGS 219 (252)
T ss_pred hhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHH--HHhCCeEEEEEecccH--HHhhhhheeeecCCEEEecCC
Confidence 999999999999999999 999999999999999995 6789999999999999 8889999999987 77889
Q ss_pred ccceeeEEEecc-ccCCCCc
Q 016817 296 ISGVYDIVCLTE-YGFPAEE 314 (382)
Q Consensus 296 ~~~v~~~~~l~~-~~~~~~~ 314 (382)
++++++.+.+++ |..+...
T Consensus 220 ~~eii~~~~L~eiydm~i~v 239 (252)
T COG4604 220 PDEIIQPEILSEIYDMDIPV 239 (252)
T ss_pred HHHhcCHHHHHHHhcCCcee
Confidence 999998888877 7766554
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=326.56 Aligned_cols=209 Identities=14% Similarity=0.132 Sum_probs=181.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|+++.+++++|++.. ++++||||++++|+++||+|||||||||+||+|++++. ++|+|+++|.|+...+
T Consensus 1 Ml~v~~l~K~y~~~v-----~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p----- 70 (245)
T COG4555 1 MLEVTDLTKSYGSKV-----QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP----- 70 (245)
T ss_pred CeeeeehhhhccCHH-----hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-----
Confidence 578899999997632 27999999999999999999999999999999999998 8999999999764332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+|+ +||.+|.+..+|..+|++||+.+++..++ .....+.++.++.+.++|.+.++ ++..++|-||||||+
T Consensus 71 -----~~vrr-~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-rRv~~~S~G~kqkV~ 143 (245)
T COG4555 71 -----SFVRR-KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-RRVGEFSTGMKQKVA 143 (245)
T ss_pred -----HHHhh-hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-HHHhhhchhhHHHHH
Confidence 23565 99999988889999999999999886654 33334567788899999998765 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
|||||+++|++++||| |||..++..+.+.++++ ++.|++||++|| .+.+++.+||+|+++++ +..+..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~---k~egr~viFSSH--~m~EvealCDrvivlh~Gevv~~gs~ 217 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL---KNEGRAVIFSSH--IMQEVEALCDRVIVLHKGEVVLEGSI 217 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHh---hcCCcEEEEecc--cHHHHHHhhheEEEEecCcEEEcCCH
Confidence 9999999999999999 99999999999999998 667999999999 55559999999999987 444444
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=366.74 Aligned_cols=215 Identities=16% Similarity=0.111 Sum_probs=178.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++. . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.....
T Consensus 2 ~L~i~~l~~~~~~~--~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~---- 71 (353)
T PRK10851 2 SIEIANIKKSFGRT--Q----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA---- 71 (353)
T ss_pred EEEEEEEEEEeCCe--E----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----
Confidence 36789999999643 2 5999999999999999999999999999999999999 89999999997643210
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCc---cccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGV---HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+ +.+||+||++.+|+++|+.+|+.+...... ... ...+++.++++.++|.+..+ ++|.+||||||
T Consensus 72 -------~~-r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGq~ 142 (353)
T PRK10851 72 -------RD-RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-RYPAQLSGGQK 142 (353)
T ss_pred -------HH-CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHH
Confidence 22 389999999999999999999976532110 011 12346778899999986654 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|+|+||||++. +..+||+|++|++ +..
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~--~~~g~tii~vTHd~~e--a~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH--EELKFTSVFVTHDQEE--AMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999 999999999999999983 4458999999996555 9999999999987 455
Q ss_pred ccccceeeEE
Q 016817 294 SEISGVYDIV 303 (382)
Q Consensus 294 ~~~~~v~~~~ 303 (382)
+++++++..|
T Consensus 219 g~~~~i~~~p 228 (353)
T PRK10851 219 GTPDQVWREP 228 (353)
T ss_pred cCHHHHHhCc
Confidence 6666676543
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=362.85 Aligned_cols=205 Identities=16% Similarity=0.148 Sum_probs=170.1
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.... ......+|++.+|||||++.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~------~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQS------PVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCC------HHHHHHHHhCcEEEEECCCc
Confidence 6999999999999999999999999999999999999 8999999999775432 22222344458999999999
Q ss_pred CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 166 GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+|+++||.+|+.+.....+.. ....+++.++++.+||..... ++|.+|||||||||+|||||+.+|++||||| +|
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999999999997654322111 112356778899999986654 9999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceeeE
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYDI 302 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~~ 302 (382)
|+.++..+++.|.++. ++.|+|||+||||++. +.++||+|++|++ +..+++++++..
T Consensus 161 D~~~r~~l~~~l~~l~--~~~~~Tii~vTHd~~e--a~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQ--ATLQKTIVFITHDLDE--AIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999983 4458999999996555 8999999999987 445566666543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=358.09 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=177.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|++|+|++.. +|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 5 ~~~i~i~~l~k~~~~~~------~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~--- 75 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKL------VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA--- 75 (306)
T ss_pred CceEEEEeEEEEECCeE------EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch---
Confidence 45899999999996432 6999999999999999999999999999999999999 8999999999764211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...|+ .+||+||++.+++.+|+.||+.+....++.. ....+++.++++.+++.+..+ +++.+||||||||
T Consensus 76 -------~~~~~-~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr 146 (306)
T PRK13537 76 -------RHARQ-RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGELSGGMKRR 146 (306)
T ss_pred -------HHHHh-cEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CchhhCCHHHHHH
Confidence 11343 8999999999999999999998655332211 111245667888999986654 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+++|++|+||| +||+.++..++++|+++ +++|+|||++||+++ ++.++||+|++|++ +..++
T Consensus 147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l---~~~g~till~sH~l~--e~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL---LARGKTILLTTHFME--EAERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEECCCHH--HHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999 99999999999999998 346899999999555 49999999999987 44555
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
++++.
T Consensus 222 ~~~l~ 226 (306)
T PRK13537 222 PHALI 226 (306)
T ss_pred HHHHH
Confidence 54443
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=359.12 Aligned_cols=226 Identities=12% Similarity=0.047 Sum_probs=181.3
Q ss_pred cCchhHHHHHhhhcccCC---------eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 63 PDGLNELRHKFLSYRSGD---------FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~---------~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
.+++++++||+++|+.+. ... .+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~--~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G 82 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTL--KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG 82 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCce--EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECC
Confidence 356899999999996321 011 26999999999999999999999999999999999999 899999999
Q ss_pred ecCCCcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCc---cccccccccCcccccccccc
Q 016817 133 TSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGV---HHNQRCLRSDDCALMKNDAE 207 (382)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~---~~~~~~~~~l~~~~L~~~~~ 207 (382)
+++.+.. ..+...+|+ .++||||++ .+++.+|+.+|+.+....+.... ...+++.++++.+++.+...
T Consensus 83 ~~i~~~~------~~~~~~~r~-~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~ 155 (331)
T PRK15079 83 KDLLGMK------DDEWRAVRS-DIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155 (331)
T ss_pred EECCcCC------HHHHHHHhC-ceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh
Confidence 9765332 122333554 899999997 58888999999976432221111 12345667899999954344
Q ss_pred ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
+++|++|||||+|||+|||||+.+|++||+|| +||+.++..++++|+++. ++.|.|+|+||||++. +.++||+
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~--~~~~~til~iTHdl~~--~~~~~dr 231 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ--REMGLSLIFIAHDLAV--VKHISDR 231 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCE
Confidence 59999999999999999999999999999999 999999999999999983 4458999999997766 9899999
Q ss_pred hhhhhh---cccccccceee
Q 016817 285 LKICEY---LGVSEISGVYD 301 (382)
Q Consensus 285 v~ll~~---~~~~~~~~v~~ 301 (382)
|++|.+ +..+++.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVYH 251 (331)
T ss_pred EEEEECCEEEEEcCHHHHHc
Confidence 999976 55566666664
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=365.07 Aligned_cols=214 Identities=14% Similarity=0.100 Sum_probs=176.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~l~i~~l~~~~~~~--~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~---- 72 (369)
T PRK11000 3 SVTLRNVTKAYGDV--V----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---- 72 (369)
T ss_pred EEEEEEEEEEeCCe--E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH----
Confidence 47889999999643 2 5999999999999999999999999999999999999 89999999997643211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+||+||++.+|+++|+.+|+.+........ ....+++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 73 -------~~-~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-~~~~~LSgGq~QRva 143 (369)
T PRK11000 73 -------AE-RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVA 143 (369)
T ss_pred -------hH-CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHH
Confidence 12 37999999999999999999997653211111 112345778899999986654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|+||||++. +..+||++++|++ +..+++.
T Consensus 144 LAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~--~~~g~tvI~vTHd~~~--~~~~~d~i~vl~~G~i~~~g~~~ 219 (369)
T PRK11000 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH--KRLGRTMIYVTHDQVE--AMTLADKIVVLDAGRVAQVGKPL 219 (369)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HHhCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4445555
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 220 ~i~~~ 224 (369)
T PRK11000 220 ELYHY 224 (369)
T ss_pred HHHhC
Confidence 56543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=341.17 Aligned_cols=206 Identities=18% Similarity=0.108 Sum_probs=168.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~------ 68 (235)
T cd03261 1 IELRGLTKSFGGR--T----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLS------ 68 (235)
T ss_pred CeEEEEEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccC------
Confidence 4578999999642 2 5999999999999999999999999999999999998 8999999998764321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+...+++ .++|+||++.+|+.+|+.+|+.+...... .. ....+++.++++.+++.+... +++.+|||||||||+
T Consensus 69 ~~~~~~~~~-~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~ 146 (235)
T cd03261 69 EAELYRLRR-RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-LYPAELSGGMKKRVA 146 (235)
T ss_pred hhhHHHHhc-ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHH
Confidence 111122444 79999999999998999999976432111 01 111234667889999986654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +..+||++++|++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvi~vsH~~~~--~~~~~d~v~~l~~ 212 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLK--KELGLTSIMVTHDLDT--AFAIADRIAVLYD 212 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEecCHHH--HHHhcCEEEEEEC
Confidence 9999999999999999 999999999999999983 3358999999996655 8889999999976
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=349.84 Aligned_cols=211 Identities=18% Similarity=0.201 Sum_probs=178.8
Q ss_pred hhHHHHHhhhccc-CCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~-~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.++++|++++|+. .. +|+||||+|++|+++||+||||||||||+|+|+|++. ++|+|.++|.+....
T Consensus 4 ~i~~~~l~k~~~~~~~------~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~----- 72 (293)
T COG1131 4 VIEVRNLTKKYGGDKT------ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE----- 72 (293)
T ss_pred eeeecceEEEeCCCCE------EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-----
Confidence 5678999999973 33 6999999999999999999999999999999999999 899999999865421
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
...+++ ++||++|++.+++.+|++||+.+.+..++.. ....+++.++++.++|.+.. ++++.+||+|||||+
T Consensus 73 -----~~~~~~-~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl 145 (293)
T COG1131 73 -----PAKVRR-RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRL 145 (293)
T ss_pred -----HHHHHh-heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHH
Confidence 122444 8999999999999999999999887655422 22346788999999999744 588999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+||+||+.+|++||||| ||||.++..++++|++++ ++.|+||+++|| .++++..+||+|+++++ +..+++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~--~~g~~tvlissH--~l~e~~~~~d~v~il~~G~~~~~g~~ 221 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELA--KEGGVTILLSTH--ILEEAEELCDRVIILNDGKIIAEGTP 221 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH--hCCCcEEEEeCC--cHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999 999999999999999993 333489999999 56669999999999987 444444
Q ss_pred cc
Q 016817 297 SG 298 (382)
Q Consensus 297 ~~ 298 (382)
.+
T Consensus 222 ~~ 223 (293)
T COG1131 222 EE 223 (293)
T ss_pred HH
Confidence 33
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=365.22 Aligned_cols=226 Identities=16% Similarity=0.100 Sum_probs=187.9
Q ss_pred cCchhHHHHHhhhcccCC-------eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 63 PDGLNELRHKFLSYRSGD-------FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~-------~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
.++.++++|+++.|...+ ..+ .+++||||++.+||++||||+||||||||.|+|+|+++ ++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~--~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEV--KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccce--eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 467889999999997421 122 37999999999999999999999999999999999999 89999999987
Q ss_pred CCCcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC--ccccccccccCccccccccccccc
Q 016817 135 SGNSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 135 i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
.+.. ..+...+|+ .+-|+|||| .|.|.+||.+++.+........ ...++++.+++++++|.....++|
T Consensus 355 -~~~~------~~~~~~~r~-~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry 426 (539)
T COG1123 355 -LDLT------GGELRRLRR-RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426 (539)
T ss_pred -cccc------cchhhhhhh-heEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 2221 122333554 899999996 5889999999998765332211 222345778899999987545699
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
|++|||||||||+|||||+.+|++|++|| +||+..+..+.++|+++ +++.|.|.|+||||+.+ +.++||||++
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l--q~e~g~t~lfISHDl~v--V~~i~drv~v 502 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL--QEELGLTYLFISHDLAV--VRYIADRVAV 502 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH--HHHhCCEEEEEeCCHHH--HHhhCceEEE
Confidence 99999999999999999999999999999 99999999999999999 46789999999998877 9999999999
Q ss_pred hhh---cccccccceeeE
Q 016817 288 CEY---LGVSEISGVYDI 302 (382)
Q Consensus 288 l~~---~~~~~~~~v~~~ 302 (382)
|+. +..++.+.+|+.
T Consensus 503 m~~G~iVE~G~~~~v~~~ 520 (539)
T COG1123 503 MYDGRIVEEGPTEKVFEN 520 (539)
T ss_pred EECCeEEEeCCHHHHhcC
Confidence 987 777777778843
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=356.06 Aligned_cols=225 Identities=12% Similarity=0.067 Sum_probs=180.8
Q ss_pred CchhHHHHHhhhcccCCe------eeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 64 DGLNELRHKFLSYRSGDF------WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~------~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+++|+++||++.|+.+.. .+ .+|+||||+|++||++||+|+||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~--~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLV--KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCce--eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC
Confidence 458999999999963210 11 26999999999999999999999999999999999999 8999999999765
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccC
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
..+ ..+...+|+ .++||||++ .+++.+++.+++.+...... ......+++.++++.+||.+...+++|+
T Consensus 81 ~~~------~~~~~~~r~-~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~ 153 (327)
T PRK11308 81 KAD------PEAQKLLRQ-KIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 (327)
T ss_pred cCC------HHHHHHHhC-CEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence 332 223333555 899999997 58888999999865432211 1111234577889999996433359999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||+|| +||+.++..++++|+++. ++.|.|+|+||||+.. +.++||+|++|.
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~--~~~g~til~iTHdl~~--~~~~adrv~vm~ 229 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ--QELGLSYVFISHDLSV--VEHIADEVMVMY 229 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 4468999999997666 888999999997
Q ss_pred h---cccccccceee
Q 016817 290 Y---LGVSEISGVYD 301 (382)
Q Consensus 290 ~---~~~~~~~~v~~ 301 (382)
+ +..++..+++.
T Consensus 230 ~G~ive~g~~~~~~~ 244 (327)
T PRK11308 230 LGRCVEKGTKEQIFN 244 (327)
T ss_pred CCEEEEECCHHHHhc
Confidence 6 55566666664
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=366.38 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=184.6
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++. . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.....
T Consensus 2 ~~L~~~nls~~y~~~--~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~--- 72 (402)
T PRK09536 2 PMIDVSDLSVEFGDT--T----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA--- 72 (402)
T ss_pred ceEEEeeEEEEECCE--E----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH---
Confidence 368899999999643 2 5999999999999999999999999999999999999 89999999987653221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh---c--CccccccccccCccccccccccccccCCCccce
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS---E--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
..+++ ++||++|++.+++.+|+.+|+.+....+. . .....+++.++++.+++.+..+ +++.+|||||
T Consensus 73 ------~~~~~-~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-~~~~~LSgGe 144 (402)
T PRK09536 73 ------RAASR-RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-RPVTSLSGGE 144 (402)
T ss_pred ------HHHhc-ceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-CChhhCCHHH
Confidence 12343 89999999998888999999976432210 1 1123356788999999986654 9999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
||||+|||||+++|++||||| +||+.++..++++|+++. ++|+|||++|||++. +.++||+++++++ +.
T Consensus 145 rQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~---~~g~TIIivsHdl~~--~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV---DDGKTAVAAIHDLDL--AARYCDELVLLADGRVRA 219 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH---hcCCEEEEEECCHHH--HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999 999999999999999983 358999999996666 9999999999987 55
Q ss_pred cccccceeeEEEecc-ccC
Q 016817 293 VSEISGVYDIVCLTE-YGF 310 (382)
Q Consensus 293 ~~~~~~v~~~~~l~~-~~~ 310 (382)
.++++++++.+.+.+ |+.
T Consensus 220 ~G~~~ev~~~~~l~~~~~~ 238 (402)
T PRK09536 220 AGPPADVLTADTLRAAFDA 238 (402)
T ss_pred ecCHHHHhCcHHHHHHhCC
Confidence 667777776665544 554
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=355.77 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=178.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----ccceeeeEeecCCCccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----~~G~I~i~G~~i~~~~~ 140 (382)
+++++|+++.|+.....+ .+|+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 3 ~L~v~~l~~~~~~~~~~~--~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~- 79 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPF--RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS- 79 (326)
T ss_pred eEEEeCeEEEECCCCccE--EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC-
Confidence 578999999997533211 16999999999999999999999999999999999986 4899999999765332
Q ss_pred ceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccc--cccccccCCC
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKN--DAEIDDLKSS 214 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~L 214 (382)
..+...+|++.++|+||++ .+++.+++.+++........ ......+++.++++.+||.+ ...+++|++|
T Consensus 80 -----~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L 154 (326)
T PRK11022 80 -----EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL 154 (326)
T ss_pred -----HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 2333334545799999997 47888898888765432221 11122356778899999964 2234899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
||||||||+|||||+.+|++||+|| +||+.++..++++|+++. ++.|.|+|+||||+.. +.++||+|++|.+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~--~~~g~til~iTHdl~~--~~~~adri~vm~~G 230 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQ--QKENMALVLITHDLAL--VAEAAHKIIVMYAG 230 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECC
Confidence 9999999999999999999999999 999999999999999983 4468999999997666 8889999999987
Q ss_pred --cccccccceee
Q 016817 291 --LGVSEISGVYD 301 (382)
Q Consensus 291 --~~~~~~~~v~~ 301 (382)
+..+++.++++
T Consensus 231 ~ive~g~~~~~~~ 243 (326)
T PRK11022 231 QVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCHHHHhh
Confidence 55566666664
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=358.44 Aligned_cols=219 Identities=17% Similarity=0.164 Sum_probs=177.3
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
||+++|++++|+.+ ... +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 mi~i~~l~~~y~~~~~~~~----il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~--- 73 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIH----ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALS--- 73 (343)
T ss_pred CEEEEeEEEEeCCCCCceE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCC---
Confidence 47789999999732 222 5999999999999999999999999999999999998 8999999999764322
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+...+|+ .+||+||++.+|+.+|+.+|+.+.....+.. ....+++.++++.+|+.+... +++.+||||||||
T Consensus 74 ---~~~~~~~~~-~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qR 148 (343)
T PRK11153 74 ---EKELRKARR-QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-RYPAQLSGGQKQR 148 (343)
T ss_pred ---HHHHHHHhc-CEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHH
Confidence 122222444 8999999999999899999997653222111 112245677889999986654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++. ++.|+|||++|||++. +.++||++++|++ +..++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~--~~~g~tiilvtH~~~~--i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN--RELGLTIVLITHEMDV--VKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999 999999999999999983 4458999999996655 8899999999987 34455
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+.+++
T Consensus 225 ~~~~~ 229 (343)
T PRK11153 225 VSEVF 229 (343)
T ss_pred HHHHH
Confidence 55554
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=337.98 Aligned_cols=203 Identities=17% Similarity=0.137 Sum_probs=166.8
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----- 69 (236)
T cd03219 1 LEVRGLTKRFGGL--V----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP----- 69 (236)
T ss_pred CeeeeeEEEECCE--E----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCH-----
Confidence 3578999999642 2 5999999999999999999999999999999999998 89999999987643211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-----------ccccccccccCccccccccccccccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-----------VHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-----------~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
.. .++..++|+||++.+|+.+|+.+|+.+........ ....+.+.++++.+|+.+... +++.+|
T Consensus 70 -~~---~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~L 144 (236)
T cd03219 70 -HE---IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD-RPAGEL 144 (236)
T ss_pred -HH---HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh-CChhhC
Confidence 11 11237999999999999899999997653211110 111235677888999986554 899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .+.|+|||++|||++. +..+||+++++++
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~vsH~~~~--~~~~~d~i~~l~~ 218 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL---RERGITVLLVEHDMDV--VMSLADRVTVLDQ 218 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999999999999 99999999999999998 3368999999996655 8889999999976
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=332.93 Aligned_cols=208 Identities=20% Similarity=0.142 Sum_probs=166.9
Q ss_pred hHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++|++++|+++. .. +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 l~~~~l~~~~~~~~~~~~----il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~---- 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQ----ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS---- 72 (218)
T ss_pred CeEeeeEEEecCCCccee----EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcc----
Confidence 45789999996521 22 5999999999999999999999999999999999998 8999999998654221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
......++++.++|++|++.+|+.+|+.+|+.+........ ....+.+.++++.+|+.+... +++.+|||||||||
T Consensus 73 --~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv 149 (218)
T cd03255 73 --EKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-HYPSELSGGQQQRV 149 (218)
T ss_pred --hhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-cChhhcCHHHHHHH
Confidence 11111122247999999999998889999997643211111 112345677889999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +. +||++++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~-~~d~v~~l~~ 215 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELN--KEAGTTIVVVTHDPEL--AE-YADRIIELRD 215 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCeEEEEECCHHH--Hh-hhcEEEEeeC
Confidence 99999999999999999 999999999999999983 3358999999996655 76 8899888864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=333.23 Aligned_cols=201 Identities=16% Similarity=0.100 Sum_probs=166.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 1 l~~~~l~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----- 69 (213)
T cd03259 1 LELKGLSKTYGSV--R----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP----- 69 (213)
T ss_pred CeeeeeEEEeCCe--e----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch-----
Confidence 4578999999642 2 5999999999999999999999999999999999998 89999999987643210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|+||++.+++.+|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+|
T Consensus 70 ------~~-~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~l 141 (213)
T cd03259 70 ------ER-RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVAL 141 (213)
T ss_pred ------hh-ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHH
Confidence 12 37999999998998899999997543211101 112245677888999986654 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +.++||+++++++
T Consensus 142 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~v~~l~~ 206 (213)
T cd03259 142 ARALAREPSLLLLDEPLSALDAKLREELREELKELQ--RELGITTIYVTHDQEE--ALALADRIAVMNE 206 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEecCHHH--HHHhcCEEEEEEC
Confidence 999999999999999 999999999999999983 3358999999996655 8889999998875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=354.49 Aligned_cols=227 Identities=18% Similarity=0.134 Sum_probs=181.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNS 138 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~ 138 (382)
..++++++|+++.|..+...+ .+|+||||+|++||++||+|+||||||||+++|+|+++ + +|+|+++|+++...
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~--~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDV--TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred CCceEEEeCeEEEEecCCCCE--EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 456899999999996422111 16999999999999999999999999999999999998 5 99999999976533
Q ss_pred ccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc-C-ccccccccccCcccccccc--ccccccC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKND--AEIDDLK 212 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~--~~~~~~~ 212 (382)
+ ..+...+|++.|+||||++ .+++.+|+.+++.+....... . ....+++.++++.++|.+. ..+++|+
T Consensus 87 ~------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 87 P------EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred C------HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 2 2333445545899999997 678889999988654322211 1 1112456778888998642 2248999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||+|||+|||||+.+|++||+|| +||+.++..++++|+++. ++.|.|+|+||||+.. +.++||++++|.
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~--~~~g~til~iTHdl~~--~~~~~Dri~vm~ 236 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELK--REFNTAIIMITHDLGV--VAGICDKVLVMY 236 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HHcCCEEEEEECCHHH--HHHhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 4458999999997666 888999999998
Q ss_pred h---cccccccceee
Q 016817 290 Y---LGVSEISGVYD 301 (382)
Q Consensus 290 ~---~~~~~~~~v~~ 301 (382)
+ +..+++++++.
T Consensus 237 ~G~ive~g~~~~i~~ 251 (330)
T PRK09473 237 AGRTMEYGNARDVFY 251 (330)
T ss_pred CCEEEEECCHHHHHh
Confidence 6 55666666664
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=356.09 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=176.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+|+++||+++|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 39 ~~~i~i~nl~k~y~~~~------~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~--- 109 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA------VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA--- 109 (340)
T ss_pred ceeEEEEEEEEEECCEE------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch---
Confidence 35799999999996432 6999999999999999999999999999999999999 8999999999764211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...++ .+||+||++.+++.+|+.+|+.+....++.. ....+++.++++.++|.+..+ +++.+||||||||
T Consensus 110 -------~~~~~-~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-~~~~~LS~G~kqr 180 (340)
T PRK13536 110 -------RLARA-RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-ARVSDLSGGMKRR 180 (340)
T ss_pred -------HHHhc-cEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhC-CChhhCCHHHHHH
Confidence 12343 8999999999999999999997654322111 112234567788999986654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+++|++||||| +|||.++..++++|+++ .+.|+|||++||+++ ++.++||+|+++++ +..++
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l---~~~g~tilisSH~l~--e~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL---LARGKTILLTTHFME--EAERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEECCCHH--HHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999 99999999999999998 336899999999555 49999999999987 44555
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+.++.
T Consensus 256 ~~~l~ 260 (340)
T PRK13536 256 PHALI 260 (340)
T ss_pred HHHHH
Confidence 55543
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=331.31 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=168.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 1 ~l~~~~l~~~~~~~~-~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~---- 71 (214)
T TIGR02673 1 MIEFHNVSKAYPGGV-A----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRG---- 71 (214)
T ss_pred CEEEEeeeEEeCCCc-e----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCH----
Confidence 467899999995222 2 6999999999999999999999999999999999998 89999999987643211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.....+++ .++|++|++.+|+..|+.+|+.+....... .....+++.++++.+++.+... +.+.+|||||||||+
T Consensus 72 --~~~~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 72 --RQLPLLRR-RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-AFPEQLSGGEQQRVA 147 (214)
T ss_pred --HHHHHHHh-heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHH
Confidence 11122343 899999999999889999999764321111 1112345677889999986654 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..+||++++|++
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~tH~~~~--~~~~~d~i~~l~~ 212 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL---NKRGTTVIVATHDLSL--VDRVAHRVIILDD 212 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhcCEEEEecC
Confidence 9999999999999999 99999999999999997 3358999999996554 8888999988763
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=380.10 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=198.0
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh-------hc-CcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA-------LI-APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
++..|+..++.+...+..+..+.+|+.++++.++.. .+ ...+.|+++||+|.|.++. + +|+|+||+|
T Consensus 299 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~-~----vL~~i~l~i 373 (588)
T PRK11174 299 EFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGK-T----LAGPLNFTL 373 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCC-e----eeeeeEEEE
Confidence 456899999999999999999999999999775421 11 0123599999997664432 2 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
++|+++||+||||||||||+++|+|+++++|+|.+||+++.+.+. ..+|+ +|+||+|++.+|+ .|++||
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~---------~~lr~-~i~~v~Q~~~LF~-~TI~eN 442 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDP---------ESWRK-HLSWVGQNPQLPH-GTLRDN 442 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCH---------HHHHh-heEEecCCCcCCC-cCHHHH
Confidence 999999999999999999999999999779999999998765432 22565 8999999999998 799999
Q ss_pred HHHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.+. .+...++++.++++.+++.+++. +. -..||||||||++|||||+++|+|||||| +|
T Consensus 443 I~~g-----~~~~~~eei~~al~~a~l~~~i~-~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaL 516 (588)
T PRK11174 443 VLLG-----NPDASDEQLQQALENAWVSEFLP-LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL 516 (588)
T ss_pred hhcC-----CCCCCHHHHHHHHHHhCHHHHHH-hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 9542 23345567788888888765443 32 23499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
|+++.+.+.+.|+++. +++|+|+||| +++.+. .+|+|+++++ +..|+.+++
T Consensus 517 D~~te~~i~~~l~~~~----~~~TvIiItH--rl~~i~-~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 517 DAHSEQLVMQALNAAS----RRQTTLMVTH--QLEDLA-QWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred CHHHHHHHHHHHHHHh----CCCEEEEEec--ChHHHH-hCCEEEEEeCCeEeecCCHHHH
Confidence 9999999999999873 5799999999 555465 5788888876 444443333
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=332.56 Aligned_cols=202 Identities=16% Similarity=0.086 Sum_probs=166.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~------- 67 (220)
T cd03265 1 IEVENLVKKYGDF--E----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE------- 67 (220)
T ss_pred CEEEEEEEEECCE--E----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-------
Confidence 4578999999642 2 5999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
. ...++ .++|+||++.+++.+|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+|
T Consensus 68 ~---~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~l 142 (220)
T cd03265 68 P---REVRR-RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-RLVKTYSGGMRRRLEI 142 (220)
T ss_pred h---HHHhh-cEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHH
Confidence 0 11333 7999999999998899999997643221111 112345678899999986654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..+||+++++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvi~~tH~~~~--~~~~~d~i~~l~~ 207 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK--EEFGMTILLTTHYMEE--AEQLCDRVAIIDH 207 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 999999999999999 999999999999999983 3348999999996555 8889999999876
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=332.87 Aligned_cols=206 Identities=15% Similarity=0.105 Sum_probs=168.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++..... ++|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~--~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------ 72 (218)
T cd03266 1 MITADALTKRFRDVKKTV--QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE------ 72 (218)
T ss_pred CeEEEEEEEecCCCCccc--eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC------
Confidence 467899999997542100 15999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
...+++ .++|+||++.+|+..|+.+|+.+........ ....+++.++++.+|+.+.+. +++.+|||||||||+
T Consensus 73 ----~~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ 146 (218)
T cd03266 73 ----PAEARR-RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-RRVGGFSTGMRQKVA 146 (218)
T ss_pred ----HHHHHh-hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-hhhhhcCHHHHHHHH
Confidence 112344 8999999999999899999997643221111 112345677899999986655 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..++|+++++++
T Consensus 147 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~tH~~~~--~~~~~d~i~~l~~ 211 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL---RALGKCILFSTHIMQE--VERLCDRVVVLHR 211 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 9999999999999999 99999999999999998 3358999999996554 8889999998875
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=377.09 Aligned_cols=249 Identities=18% Similarity=0.130 Sum_probs=205.5
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++..|+.+++.+...+..+..+.+|+.++++.++... ....+.|+++||+|+|+++. ++|+|+||+++
T Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~-----~vl~~is~~i~ 353 (567)
T COG1132 279 LRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK-----PVLKDISFSIE 353 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCC-----ccccCceEEEc
Confidence 35677999999999999999999999999999866311 11234599999999998532 26999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||.+||+||||||||||+++|+|+++ ++|+|.+||+++.+... ..+|+ +|++|+||+.+|. .|+++|
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~---------~~lr~-~I~~V~Qd~~LF~-~TI~~N 422 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL---------DSLRK-RIGIVSQDPLLFS-GTIREN 422 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH---------HHHHH-hccEEcccceeec-ccHHHH
Confidence 999999999999999999999999999 79999999998875542 23665 9999999999998 899999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.++ .....++++.++++.+++.+++. +.| ..||||||||++||||++++|+||+||| +|
T Consensus 423 I~~g-----~~~at~eei~~a~k~a~~~d~I~-~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal 496 (567)
T COG1132 423 IALG-----RPDATDEEIEEALKLANAHEFIA-NLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL 496 (567)
T ss_pred HhcC-----CCCCCHHHHHHHHHHhChHHHHH-hCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 9643 23345567778888777665544 323 3499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+.++..+++.+.++. +++|+|+|+| +++++.. +|+|+++++ +..|..++.+
T Consensus 497 D~~tE~~I~~~l~~l~----~~rT~iiIaH--Rlsti~~-aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 497 DTETEALIQDALKKLL----KGRTTLIIAH--RLSTIKN-ADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred CHHhHHHHHHHHHHHh----cCCEEEEEec--cHhHHHh-CCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999872 5689999999 7777887 888888876 5556555544
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=313.90 Aligned_cols=201 Identities=14% Similarity=0.143 Sum_probs=172.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
++.+++++.+|.+.... +|+|+|++|.+||+++++||||||||||+|+++|+.+ ..|+|.+||+.+....
T Consensus 3 ~l~~~~~sl~y~g~~~~----~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg----- 73 (259)
T COG4525 3 MLNVSHLSLSYEGKPRS----ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG----- 73 (259)
T ss_pred eeehhheEEecCCcchh----hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----
Confidence 56788999999765422 6999999999999999999999999999999999999 8999999999765332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..-|.|||+..|+|++++.+|+++.....+ .+....+++.+.+..+||.+.- ++++.+|||||||||.
T Consensus 74 ----------aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-~~~i~qLSGGmrQRvG 142 (259)
T COG4525 74 ----------AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-HKYIWQLSGGMRQRVG 142 (259)
T ss_pred ----------ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-ccceEeecchHHHHHH
Confidence 145899999999999999999988754433 2222345677788999999765 5999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++|+||| +||.-++++++++|.+++ ++.|+.+++||| +++++.-.++++++|..
T Consensus 143 iARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw--~~tgk~~lliTH--~ieEAlflatrLvvlsp 208 (259)
T COG4525 143 IARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW--QETGKQVLLITH--DIEEALFLATRLVVLSP 208 (259)
T ss_pred HHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHH--HHhCCeEEEEec--cHHHHHhhhheeEEecC
Confidence 9999999999999999 999999999999999995 778999999999 55558888999998854
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=334.38 Aligned_cols=209 Identities=18% Similarity=0.155 Sum_probs=169.7
Q ss_pred hhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+|+++|++++|++.. .+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 ~i~~~~l~~~~~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--- 73 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVT----ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS--- 73 (233)
T ss_pred CeEEecceEEccCCCCcee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC---
Confidence 467899999996431 12 5999999999999999999999999999999999999 8999999998764221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.......++ .++|++|++.+|+.+|+.+|+.+....... .....+.+.++++.+++.+... +++.+||||||||
T Consensus 74 ---~~~~~~~~~-~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr 148 (233)
T cd03258 74 ---GKELRKARR-RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-AYPAQLSGGQKQR 148 (233)
T ss_pred ---HHHHHHHHh-heEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-cChhhCCHHHHHH
Confidence 111112343 799999999999889999999764321111 1111235677889999986654 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..+||+++++++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tvii~sH~~~~--~~~~~d~i~~l~~ 216 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDIN--RELGLTIVLITHEMEV--VKRICDRVAVMEK 216 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 999999999999999983 3348999999996555 8889999999876
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=362.68 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=192.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c----cceeeeEeecCCCcc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~----~G~I~i~G~~i~~~~ 139 (382)
++++++|+++.|......+ .+++||||+|.+||++||||.|||||||+.++|.|+++ . +|+|.++|+++...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~--~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l- 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRV--PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL- 80 (539)
T ss_pred ceEEEeceEEEEecCCcce--eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC-
Confidence 4889999999997654333 27999999999999999999999999999999999998 5 79999999976533
Q ss_pred cceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc--CccccccccccCcccccccccc-ccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAE-IDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~-~~~~~~L 214 (382)
.....+.+|.+.|+|+||++ .|.|-+|+.+.+.+....... .....+++.++++++||.+... ++||++|
T Consensus 81 -----~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheL 155 (539)
T COG1123 81 -----SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQL 155 (539)
T ss_pred -----CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCccc
Confidence 33445667878999999996 366778999988876544321 2223456778899999986544 3599999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
||||||||.||+||+.+|++||+|| +||+.++.+|+++|+++ +++.|+++|+||||+.+ +.++||+|++|.+
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l--~~e~g~a~l~ITHDl~V--va~~aDrv~Vm~~G 231 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL--QRELGMAVLFITHDLGV--VAELADRVVVMYKG 231 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH--HHHcCcEEEEEcCCHHH--HHHhcCeEEEEECC
Confidence 9999999999999999999999999 99999999999999999 37789999999998888 9999999999987
Q ss_pred --cccccccceeeEE
Q 016817 291 --LGVSEISGVYDIV 303 (382)
Q Consensus 291 --~~~~~~~~v~~~~ 303 (382)
+..++++++|+.+
T Consensus 232 ~iVE~G~~~~i~~~p 246 (539)
T COG1123 232 EIVETGPTEEILSNP 246 (539)
T ss_pred EEEEecCHHHHHhcc
Confidence 7888888898654
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=348.44 Aligned_cols=213 Identities=16% Similarity=0.084 Sum_probs=173.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++|++++|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 3 ~~i~~~~l~~~~~~~~------~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----- 71 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKV------VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR----- 71 (303)
T ss_pred cEEEEEeEEEEeCCeE------EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-----
Confidence 4688999999996432 5999999999999999999999999999999999998 899999999865321
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....|+ .+||++|++.+++.+|+.+|+.+.....+.. ....+++.++++.+++.+... +++.+|||||||||
T Consensus 72 -----~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~-~~~~~LSgG~~qrv 144 (303)
T TIGR01288 72 -----ARLARV-AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-VRVALLSGGMKRRL 144 (303)
T ss_pred -----HHHHhh-cEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CchhhCCHHHHHHH
Confidence 112343 8999999999998899999997543222111 111234566788899986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +..+||+++++++ +..+++
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~~g~til~~sH~~~~--~~~~~d~i~~l~~G~i~~~g~~ 219 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL---LARGKTILLTTHFMEE--AERLCDRLCVLESGRKIAEGRP 219 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999 99999999999999998 3368999999996555 8899999999976 344444
Q ss_pred ccee
Q 016817 297 SGVY 300 (382)
Q Consensus 297 ~~v~ 300 (382)
.++.
T Consensus 220 ~~~~ 223 (303)
T TIGR01288 220 HALI 223 (303)
T ss_pred HHHH
Confidence 4443
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=344.94 Aligned_cols=223 Identities=14% Similarity=0.130 Sum_probs=174.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++|++++|+.+... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.....
T Consensus 1 mi~~~~v~~~y~~~~~~-~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~---- 75 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPF-ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK---- 75 (288)
T ss_pred CEEEEEEEEEeCCCCcc-cccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccc----
Confidence 57889999999643210 0016999999999999999999999999999999999999 89999999997642110
Q ss_pred hhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
......+|+ .+||+||++ .+|+ .|+.+|+.+....++. .....+++.++++.++|.+.+.++.|.+||||||||
T Consensus 76 -~~~~~~~~~-~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr 152 (288)
T PRK13643 76 -QKEIKPVRK-KVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 (288)
T ss_pred -cccHHHHHh-hEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence 011222444 899999987 5666 6999999765322211 111234567788899996433359999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||++|||++. +..+||+|++|++ +..++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l---~~~g~til~vtHd~~~--~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI---HQSGQTVVLVTHLMDD--VADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999 99999999999999998 3358999999997665 8889999999987 45566
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
+.+++.
T Consensus 228 ~~~~~~ 233 (288)
T PRK13643 228 PSDVFQ 233 (288)
T ss_pred HHHHHc
Confidence 666664
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=333.87 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=166.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++.. +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 1 l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----- 69 (232)
T cd03218 1 LRAENLSKRYGKRK------VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPM----- 69 (232)
T ss_pred CeEEEEEEEeCCEE------eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCH-----
Confidence 45789999996432 5999999999999999999999999999999999999 89999999986542211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.. ..+ +.++|+||++.+|+.+|+.+|+.......... ....+.+.++++.+++.+... +.+.+|||||||||+|
T Consensus 70 -~~--~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~l 144 (232)
T cd03218 70 -HK--RAR-LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVEI 144 (232)
T ss_pred -hH--HHh-ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHH
Confidence 11 112 37999999999999899999997643211111 111234567888899986554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .+.|+|||++|||++. +..+||+++++++
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~---~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 208 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL---KDRGIGVLITDHNVRE--TLSITDRAYIIYE 208 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 99999999999999998 3358999999996655 8889999999976
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=321.33 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=189.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+++.++|+.|+|+... ++++|||+|++||++||+|||||||||.+.++.|+.+ ++|+|++||.|++..+.
T Consensus 3 ~~L~a~~l~K~y~kr~------Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm--- 73 (243)
T COG1137 3 STLVAENLAKSYKKRK------VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM--- 73 (243)
T ss_pred cEEEehhhhHhhCCee------eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh---
Confidence 3678899999996544 6999999999999999999999999999999999999 99999999998865432
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-c--cccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-V--HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~--~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+ .|. .|||++|++..|-.+||.+|+..+....... . ..+.+..++++.+++.+. .+++..+||||||+
T Consensus 74 ---~~R--Arl-GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-r~~~a~sLSGGERR 146 (243)
T COG1137 74 ---HKR--ARL-GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-RDSKAYSLSGGERR 146 (243)
T ss_pred ---HHH--hhc-CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-hcCcccccccchHH
Confidence 222 333 8999999999999999999998765433211 1 112335678999999865 45899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|+.|||||+.+|+++|||| ++||.....|.++++.| +++|..|+++-| +..+...+|||.+++.. +..|
T Consensus 147 R~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L---~~rgiGvLITDH--NVREtL~i~dRaYIi~~G~vla~G 221 (243)
T COG1137 147 RVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL---KDRGIGVLITDH--NVRETLDICDRAYIISDGKVLAEG 221 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH---HhCCceEEEccc--cHHHHHhhhheEEEEecCeEEecC
Confidence 9999999999999999999 99999999999999999 668999999999 66668899999999987 7788
Q ss_pred cccceeeEEEecc
Q 016817 295 EISGVYDIVCLTE 307 (382)
Q Consensus 295 ~~~~v~~~~~l~~ 307 (382)
.++++.+.|.+++
T Consensus 222 ~p~ei~~n~~Vr~ 234 (243)
T COG1137 222 SPEEIVNNEDVRR 234 (243)
T ss_pred CHHHHhcChhhhh
Confidence 8999998887766
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=336.15 Aligned_cols=202 Identities=16% Similarity=0.116 Sum_probs=166.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 2 ~l~~~~l~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---- 71 (239)
T cd03296 2 SIEVRNVSKRFGDF--V----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV---- 71 (239)
T ss_pred EEEEEeEEEEECCE--E----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc----
Confidence 36789999999642 2 5999999999999999999999999999999999998 89999999987642211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc----Cc-cccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE----GV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+ +.++|++|++.+|+..|+.+|+.+....... .. ...+.+.++++.+++.+... +++.+||||||
T Consensus 72 -------~~-~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~ 142 (239)
T cd03296 72 -------QE-RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-RYPAQLSGGQR 142 (239)
T ss_pred -------cc-cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHH
Confidence 12 3799999999999889999999754321111 00 11234567788999986554 89999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..+||++++|++
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tvii~sH~~~~--~~~~~d~i~~l~~ 212 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH--DELHVTTVFVTHDQEE--ALEVADRVVVMNK 212 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999 999999999999999983 3348999999996655 8888999999976
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=333.82 Aligned_cols=208 Identities=16% Similarity=0.142 Sum_probs=168.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 ~l~~~~l~~~~~~~-~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----- 70 (243)
T TIGR02315 1 MLEVENLSKVYPNG-KQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR----- 70 (243)
T ss_pred CeEEEeeeeecCCC-cc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCC-----
Confidence 46789999999622 22 6999999999999999999999999999999999998 8999999998654221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh--------h-cCccccccccccCccccccccccccccCCCc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM--------S-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~--------~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
......+++ .++|+||++.+|+.+|+.+|+.+..... . ......+++.++++.+++.+... +++.+||
T Consensus 71 -~~~~~~~~~-~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS 147 (243)
T TIGR02315 71 -GKKLRKLRR-RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-QRADQLS 147 (243)
T ss_pred -HHHHHHHHh-heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-CCcccCC
Confidence 111122344 8999999999998899999996432110 0 01112245667888999986554 8999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +.++||+++++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiii~tH~~~~--~~~~~d~v~~l~~ 221 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRIN--KEDGITVIINLHQVDL--AKKYADRIVGLKA 221 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhcCeEEEEEC
Confidence 999999999999999999999999 999999999999999983 3358999999996665 8889999999976
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=328.44 Aligned_cols=201 Identities=11% Similarity=0.086 Sum_probs=165.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~~~~------~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~----- 69 (213)
T cd03301 1 VELENVTKRFGNVT------ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP----- 69 (213)
T ss_pred CEEEeeEEEECCee------eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-----
Confidence 35789999996432 5999999999999999999999999999999999998 89999999987642211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|++|++.+|+..|+.+|+......... .....+++.++++.+|+.+... +++.+||||||||++|
T Consensus 70 ------~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~l 141 (213)
T cd03301 70 ------KD-RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-RKPKQLSGGQRQRVAL 141 (213)
T ss_pred ------cc-ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-CChhhCCHHHHHHHHH
Confidence 12 3799999999999889999999764321111 1111235667788999986654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 142 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvi~~sH~~~~--~~~~~d~i~~l~~ 206 (213)
T cd03301 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQ--QRLGTTTIYVTHDQVE--AMTMADRIAVMND 206 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhcCeEEEEEC
Confidence 999999999999999 999999999999999983 3358999999996655 8888999988865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=349.05 Aligned_cols=224 Identities=16% Similarity=0.160 Sum_probs=176.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----ccceeeeEeecCCCccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----~~G~I~i~G~~i~~~~~ 140 (382)
+++++|++++|..+.... .+|+||||+|.+||+++|+|+||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 3 ~L~v~~l~~~y~~~~~~~--~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~- 79 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWV--KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS- 79 (330)
T ss_pred eEEEeeeEEEEeCCCCCE--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC-
Confidence 688999999995421111 16999999999999999999999999999999999984 5899999999764322
Q ss_pred ceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh-cC------ccccccccccCcccccccc--cccc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS-EG------VHHNQRCLRSDDCALMKND--AEID 209 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~-~~------~~~~~~~~~~l~~~~L~~~--~~~~ 209 (382)
..+...+|++.++||||++. +++.+|+.+++.+...... .+ ....+++.++++.+||.+. ..++
T Consensus 80 -----~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 80 -----PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred -----HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 22333344457999999975 6778899999865321111 11 0112456788999999742 2358
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
+|.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||+.. +.++||+++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~--~~~g~tii~itHdl~~--v~~~~dri~ 230 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLN--QNNNTTILLISHDLQM--LSQWADKIN 230 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HhcCCEEEEEECCHHH--HHHhCCEEE
Confidence 999999999999999999999999999999 999999999999999983 4458999999997666 989999999
Q ss_pred hhhh---cccccccceee
Q 016817 287 ICEY---LGVSEISGVYD 301 (382)
Q Consensus 287 ll~~---~~~~~~~~v~~ 301 (382)
+|++ +..+++++++.
T Consensus 231 vm~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 231 VLYCGQTVETAPSKELVT 248 (330)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 9987 45555555653
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=327.37 Aligned_cols=206 Identities=17% Similarity=0.124 Sum_probs=167.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++. . +|+|+||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 l~~~~l~~~~~~~~-~----~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~------ 69 (214)
T cd03292 1 IEFINVTKTYPNGT-A----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR------ 69 (214)
T ss_pred CEEEEEEEEeCCCc-e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCC------
Confidence 35789999996432 2 5999999999999999999999999999999999998 8999999998764321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
......+|+ .++|++|++.+|+..|+.+|+.+....... .....+++.++++.+++.+... +++.+||||||||++|
T Consensus 70 ~~~~~~~~~-~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~l 147 (214)
T cd03292 70 GRAIPYLRR-KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-ALPAELSGGEQQRVAI 147 (214)
T ss_pred HHHHHHHHH-heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHH
Confidence 111222444 899999999999989999999764322111 1112245667888999986554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +..+||++++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~---~~~~~tiiivtH~~~~--~~~~~d~i~~l~~ 211 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI---NKAGTTVVVATHAKEL--VDTTRHRVIALER 211 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 999999999999999 99999999999999998 3358999999996655 8888999888764
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=382.11 Aligned_cols=246 Identities=16% Similarity=0.133 Sum_probs=200.7
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh----c--CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL----I--APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++..|+.+++.....++.+..+.+|+.++++.++... . ...+.|+++||+|+|++...+ +|+|+||+|+
T Consensus 402 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~----vL~~isl~i~ 477 (686)
T TIGR03797 402 GSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPL----ILDDVSLQIE 477 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCcc----ceeeeEEEEC
Confidence 36788999999999999999999999999987754311 0 112468999999999654333 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||.+||+||||||||||+|+|+|+++ ++|+|.+||+++.+... ..+|+ ++|||+|++.+|+ .|++||
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~---------~~lr~-~i~~v~Q~~~lf~-gTI~eN 546 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV---------QAVRR-QLGVVLQNGRLMS-GSIFEN 546 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH---------HHHHh-ccEEEccCCccCc-ccHHHH
Confidence 999999999999999999999999999 89999999998765432 23665 8999999999998 799999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+... .+ .+++++.++++.+++.+.+. +.| ..||||||||++|||||+++|++||||| +|
T Consensus 547 i~~~-----~~-~~~e~i~~al~~a~l~~~i~-~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~L 619 (686)
T TIGR03797 547 IAGG-----AP-LTLDEAWEAARMAGLAEDIR-AMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSAL 619 (686)
T ss_pred HhcC-----CC-CCHHHHHHHHHHcCcHHHHH-hccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 9642 22 45567788888888876544 333 3599999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
|+.+++.+.+.|+++ ++|+|+||| +++.+. .+|+|++|++ +..|+.+++
T Consensus 620 D~~te~~i~~~L~~~------~~T~IiItH--r~~~i~-~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 620 DNRTQAIVSESLERL------KVTRIVIAH--RLSTIR-NADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred CHHHHHHHHHHHHHh------CCeEEEEec--ChHHHH-cCCEEEEEECCEEEEECCHHHH
Confidence 999999999999875 479999999 554465 4888888876 444444443
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=331.47 Aligned_cols=210 Identities=19% Similarity=0.147 Sum_probs=168.6
Q ss_pred chhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 65 GLNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
++++++||++.|+.+. .+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~-- 77 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTD----VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLS-- 77 (233)
T ss_pred ceEEEEeEEEEcCCCCccee----eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--
Confidence 4789999999996432 22 5999999999999999999999999999999999998 8999999998764322
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+....+++.++|+||++.+|+.+|+.+|+.+....... .....+++.++++.+|+.+... +.+.+|||||||
T Consensus 78 ----~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~q 152 (233)
T PRK11629 78 ----SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-HRPSELSGGERQ 152 (233)
T ss_pred ----HHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHH
Confidence 1122223323799999999999888999999764321111 1112345677899999986654 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +..+| ++++|++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tvii~sH~~~~--~~~~~-~~~~l~~ 220 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN--RLQGTAFLVVTHDLQL--AKRMS-RQLEMRD 220 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHhhC-EEEEEEC
Confidence 9999999999999999999 999999999999999983 3358999999996655 77765 6666655
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=326.28 Aligned_cols=203 Identities=21% Similarity=0.173 Sum_probs=162.8
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|++.... +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------- 69 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS------- 69 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC-------
Confidence 367899999652222 5999999999999999999999999999999999998 8999999998654221
Q ss_pred hhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 147 EEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+++ .++|++|++. .++..|+.+|+.+........ ....+.+.++++.+++.+... +++.+|||||||||+|
T Consensus 70 --~~~~~~-~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~l 145 (211)
T cd03225 70 --LKELRR-KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-RSPFTLSGGQKQRVAI 145 (211)
T ss_pred --HHHHHh-hceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHH
Confidence 111343 7999999974 355689999996543211101 111235667888899986554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +..+||+++++++
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~---~~~~~tvi~~sH~~~~--~~~~~d~i~~l~~ 209 (211)
T cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL---KAEGKTIIIVTHDLDL--LLELADRVIVLED 209 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 999999999999999 99999999999999998 3348999999996655 8888999988753
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=329.22 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=163.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++. + +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----- 69 (222)
T cd03224 1 LEVENLNAGYGKS--Q----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP----- 69 (222)
T ss_pred CEEeeEEeecCCe--e----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCH-----
Confidence 4578999999643 2 5999999999999999999999999999999999999 89999999986543211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-cccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ ..+ +.++|+||++.+|+.+|+.+|+.+...... .....+.+.++++.+ ++.+... +++.+|||||||||+|
T Consensus 70 -~~--~~~-~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrv~l 143 (222)
T cd03224 70 -HE--RAR-AGIGYVPEGRRIFPELTVEENLLLGAYARR-RAKRKARLERVYELFPRLKERRK-QLAGTLSGGEQQMLAI 143 (222)
T ss_pred -HH--HHh-cCeEEeccccccCCCCcHHHHHHHHhhhcC-chhHHHHHHHHHHHHHhhhhhhh-CchhhCCHHHHHHHHH
Confidence 11 122 379999999999998999999976432211 111123345567777 4665544 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+++.|+++ .+.|.|||++|||++. +.++||+++++++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 207 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL---RDEGVTILLVEQNARF--ALEIADRAYVLER 207 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhccEEEEeeC
Confidence 999999999999999 99999999999999998 3368999999996655 8889999999876
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=352.06 Aligned_cols=221 Identities=15% Similarity=0.059 Sum_probs=175.3
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
-.++.++|+... +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|++... ........
T Consensus 27 ~~~~~~~~g~~~------~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~--~i~~~~~~ 98 (382)
T TIGR03415 27 REEILDETGLVV------GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSI--DVANCDAA 98 (382)
T ss_pred HHHHHHhhCCEE------EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEeccc--ccccCCHH
Confidence 346677785432 6999999999999999999999999999999999999 89999999963100 00011223
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
....+|++.++|+||++.+|+++|+.+|+.+.....+. .....+++.++++.+||.+.. +++|.+|||||||||+|||
T Consensus 99 ~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 99 TLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-DKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred HHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHH
Confidence 33345545899999999999999999999765322111 111234567889999998665 4999999999999999999
Q ss_pred eehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 227 VVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 227 aL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.+|+|||||| +||+..+..+++.|.++. ++.++|||+||||++. +.++||++++|++ +..+++++++
T Consensus 178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~--~~~~~TII~iTHdl~e--~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 178 AFAMDADILLMDEPFSALDPLIRTQLQDELLELQ--AKLNKTIIFVSHDLDE--ALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999 999999999999999983 4458999999996655 9999999999987 4556666666
Q ss_pred eE
Q 016817 301 DI 302 (382)
Q Consensus 301 ~~ 302 (382)
..
T Consensus 254 ~~ 255 (382)
T TIGR03415 254 LN 255 (382)
T ss_pred hC
Confidence 43
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=380.36 Aligned_cols=264 Identities=17% Similarity=0.149 Sum_probs=204.1
Q ss_pred CCCCCCceEEeeccccchhhhhh---hccCCCCccccchhHHHHHHhhhh--h-------hcCcCchhHHHHHhhhcccC
Q 016817 12 EYDPSGLVYCWWRSAAKFDECVK---LKLDLPNVSTLTPRLRVLREMERL--A-------LIAPDGLNELRHKFLSYRSG 79 (382)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~i~i~nvs~~y~~~ 79 (382)
.|.+-....|.+.+.--=..++. -...+..+.++..++.++++-.+. + .....+.|+++||+|+|+..
T Consensus 284 ~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsR 363 (1228)
T KOG0055|consen 284 GYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSR 363 (1228)
T ss_pred CCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCC
Confidence 34444555555544332223332 233444677888888888776653 1 11235689999999999876
Q ss_pred CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccc
Q 016817 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (382)
Q Consensus 80 ~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig 158 (382)
... ++|+|+||+|++|+++||||||||||||++++|.|+++ ++|+|.+||.|+.+.... .+|+ +||
T Consensus 364 pdv---~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~---------~lr~-~ig 430 (1228)
T KOG0055|consen 364 PDV---KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLK---------WLRS-QIG 430 (1228)
T ss_pred Ccc---hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchH---------HHHh-hcC
Confidence 522 27999999999999999999999999999999999999 899999999988654432 2666 999
Q ss_pred eeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeee
Q 016817 159 FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMV 227 (382)
Q Consensus 159 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAra 227 (382)
+|+|+|.||. .|++|||.+ +......+++.++.++++..+++. +.| -+||||||||||||||
T Consensus 431 lV~QePvlF~-~tI~eNI~~-----G~~dat~~~i~~a~k~ana~~fi~-~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 431 LVSQEPVLFA-TTIRENIRY-----GKPDATREEIEEAAKAANAHDFIL-KLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred eeeechhhhc-ccHHHHHhc-----CCCcccHHHHHHHHHHccHHHHHH-hhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 9999999997 899999954 334455667777777776655443 333 2499999999999999
Q ss_pred ehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 228 VSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 228 L~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
|+++|+|||||| +||+++++.++++|.+.. .|+|.|+|+| +++++++ +|+|+++++ +..|..++++.
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~----~grTTivVaH--RLStIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDKAS----KGRTTIVVAH--RLSTIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHHhh----cCCeEEEEee--ehhhhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999 999999999999999873 6899999999 8888987 888888877 66666666654
Q ss_pred E
Q 016817 302 I 302 (382)
Q Consensus 302 ~ 302 (382)
.
T Consensus 577 ~ 577 (1228)
T KOG0055|consen 577 L 577 (1228)
T ss_pred c
Confidence 3
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=329.04 Aligned_cols=202 Identities=16% Similarity=0.148 Sum_probs=166.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++||++.|+++..+ +|+|+||++++||+++|+||||||||||+++|+|+++ ++|+|+++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------- 69 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD------- 69 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-------
Confidence 4578999999653122 5999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+++ .++|++|++.+++..|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+|
T Consensus 70 ---~~~~~~-~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~l 144 (220)
T cd03263 70 ---RKAARQ-SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-KRARTLSGGMKRKLSL 144 (220)
T ss_pred ---hHHHhh-hEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-ChhhhCCHHHHHHHHH
Confidence 012343 7999999999998899999997643222111 111245667888899986554 8899999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|||++|||++. +.++||+++++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~--~~~~~d~i~~l~~ 207 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR----KGRSIILTTHSMDE--AEALCDRIAIMSD 207 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEcCCHHH--HHHhcCEEEEEEC
Confidence 999999999999999 999999999999999983 25899999996665 8889999999876
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=330.13 Aligned_cols=202 Identities=19% Similarity=0.177 Sum_probs=163.8
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh-----c-ccceeeeEeecCCCccc
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-----S-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~-----~-~~G~I~i~G~~i~~~~~ 140 (382)
|+++||+++|+... +|+|+||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++....
T Consensus 1 i~~~~l~~~~~~~~------~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~- 73 (227)
T cd03260 1 IELRDLNVYYGDKH------ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD- 73 (227)
T ss_pred CEEEEEEEEcCCce------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcc-
Confidence 45789999996432 699999999999999999999999999999999999 8 7999999998653221
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCccccccccccccc--cCCCcc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCALMKNDAEIDD--LKSSPK 216 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~L~~~~~~~~--~~~LSG 216 (382)
.+...+++ .++|+||++.+| .+|+.+|+.+.......... ..+++.++++.+|+.+... +. +.+|||
T Consensus 74 ------~~~~~~~~-~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~LSg 144 (227)
T cd03260 74 ------VDVLELRR-RVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK-DRLHALGLSG 144 (227)
T ss_pred ------hHHHHHHh-hEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHh-ccCCcccCCH
Confidence 01122343 899999999888 69999999754321111111 2345677889999986555 44 699999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++ .|||++|||++. +..+||+++++++
T Consensus 145 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~-~tii~~sH~~~~--~~~~~d~i~~l~~ 215 (227)
T cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK---KE-YTIVIVTHNMQQ--AARVADRTAFLLN 215 (227)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---hC-cEEEEEeccHHH--HHHhCCEEEEEeC
Confidence 99999999999999999999999 999999999999999983 34 899999996655 8889999999876
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=328.82 Aligned_cols=207 Identities=20% Similarity=0.158 Sum_probs=167.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----- 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGR-Q----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLK----- 70 (222)
T ss_pred CEEEEeeEEEecCCC-e----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCC-----
Confidence 467899999994222 2 5999999999999999999999999999999999999 8999999998764221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
......+++ .++|++|++.+++..|+.+|+.+........ ....+.+.++++.+++.+... +++.+|||||||||+
T Consensus 71 -~~~~~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ 147 (222)
T PRK10908 71 -NREVPFLRR-QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-NFPIQLSGGEQQRVG 147 (222)
T ss_pred -hhHHHHHHh-heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CCchhCCHHHHHHHH
Confidence 111122343 8999999998888899999997643211111 111234567888999986654 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|+|++|||++. +..+||+++++++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 212 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF---NRVGVTVLMATHDIGL--ISRRSYRMLTLSD 212 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999 99999999999999998 3358999999996665 8889999998876
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=328.81 Aligned_cols=199 Identities=15% Similarity=0.104 Sum_probs=165.3
Q ss_pred hHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++|++++|+++. .+ +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~~~~~----il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------ 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVT----ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------ 70 (220)
T ss_pred CeEEEEEEEcCCCCcceE----EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc------
Confidence 45789999996421 22 5999999999999999999999999999999999998 89999999986531
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.+ +.++|++|++.+|+..|+.+|+.+........ ....+.+.++++.+++.+... +.+.+||||||||+
T Consensus 71 --------~~-~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl 140 (220)
T cd03293 71 --------PG-PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-AYPHQLSGGMRQRV 140 (220)
T ss_pred --------cc-CcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHH
Confidence 12 37999999999998899999997643211111 112345677889999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||++++|+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~ 206 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW--RETGKTVLLVTHDIDE--AVFLADRVVVLS 206 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHH--HHcCCEEEEEecCHHH--HHHhCCEEEEEE
Confidence 99999999999999999 999999999999999873 3458999999996654 888999999987
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=342.89 Aligned_cols=224 Identities=14% Similarity=0.116 Sum_probs=174.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+..... ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 3 l~~~~l~~~y~~~~~~-~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----- 76 (290)
T PRK13634 3 ITFQKVEHRYQYKTPF-ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK----- 76 (290)
T ss_pred EEEEEEEEEECCCCcc-cccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccc-----
Confidence 6789999999642100 0016999999999999999999999999999999999999 89999999997642110
Q ss_pred hhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 146 MEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.......++ .+||+||++ .+|+ .|+.+|+.+.....+.. ....+++.++++.++|.+.+.++++.+|||||||||
T Consensus 77 ~~~~~~~~~-~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (290)
T PRK13634 77 NKKLKPLRK-KVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV 154 (290)
T ss_pred cchHHHHHh-hEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH
Confidence 011122343 799999986 4564 79999997643221111 111245677889999974434589999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +..+||+|++|++ +..+++
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~--~~~g~tviiitHd~~~--~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH--KEKGLTTVLVTHSMED--AARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999 999999999999999983 4458999999996665 8889999999987 445555
Q ss_pred cceeeE
Q 016817 297 SGVYDI 302 (382)
Q Consensus 297 ~~v~~~ 302 (382)
++++..
T Consensus 231 ~~~~~~ 236 (290)
T PRK13634 231 REIFAD 236 (290)
T ss_pred HHHhcC
Confidence 666643
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=352.84 Aligned_cols=220 Identities=15% Similarity=0.115 Sum_probs=177.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..++++++.+.|+.. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++....
T Consensus 27 ~~~~~~~~~~~~~~~--~----~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~---- 96 (400)
T PRK10070 27 QGLSKEQILEKTGLS--L----GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS---- 96 (400)
T ss_pred ccccHHHHHhhcCCe--E----EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCC----
Confidence 367788888888432 2 6999999999999999999999999999999999999 8999999999765322
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.......+++.+||+||++.+|+++|+.+|+.+.....+.. ....+++.++++.+||.+... ++|.+|||||||||
T Consensus 97 --~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-~~~~~LSgGq~QRv 173 (400)
T PRK10070 97 --DAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-SYPDELSGGMRQRV 173 (400)
T ss_pred --HHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-cCcccCCHHHHHHH
Confidence 11222233347999999999999999999997653221111 112345677899999986654 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+++.|.++. ++.|+|||+||||++. +.++||++++|++ +..+++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~--~~~g~TIIivTHd~~~--~~~~~Dri~vL~~G~i~~~g~~ 249 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ--AKHQRTIVFISHDLDE--AMRIGDRIAIMQNGEVVQVGTP 249 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH--HHCCCeEEEEECCHHH--HHHhCCEEEEEECCEEEecCCH
Confidence 99999999999999999 999999999999999983 3458999999996555 8899999999987 334445
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
++++.
T Consensus 250 ~~l~~ 254 (400)
T PRK10070 250 DEILN 254 (400)
T ss_pred HHHHh
Confidence 55544
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=330.79 Aligned_cols=207 Identities=17% Similarity=0.126 Sum_probs=167.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~-~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------ 69 (241)
T cd03256 1 IEVENLSKTYPNG-KK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK------ 69 (241)
T ss_pred CEEeeEEEecCCc-cE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccC------
Confidence 3578999999642 22 5999999999999999999999999999999999998 8999999998764321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh--------hh-cCccccccccccCccccccccccccccCCCcc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW--------MS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~--------~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
......+++ .++|++|++.+|+.+|+.+|+.+.... .. ......+++.++++.+++.+... +++.+|||
T Consensus 70 ~~~~~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~ 147 (241)
T cd03256 70 GKALRQLRR-QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-QRADQLSG 147 (241)
T ss_pred HhHHHHHHh-ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-CCcccCCH
Confidence 111122343 899999999999889999999653210 00 00112245667788999986554 89999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..+||++++|++
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~tH~~~~--~~~~~d~v~~l~~ 220 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRIN--REEGITVIVSLHQVDL--AREYADRIVGLKD 220 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999 999999999999999983 3358999999996655 8889999999976
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=341.98 Aligned_cols=220 Identities=16% Similarity=0.138 Sum_probs=172.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++||+++|+.+... ..++|+||||+|++||++||+||||||||||+++|+|+++ ++|+|+++|+++...+.
T Consensus 3 l~~~~l~~~y~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----- 76 (287)
T PRK13637 3 IKIENLTHIYMEGTPF-EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV----- 76 (287)
T ss_pred EEEEEEEEECCCCCcc-ccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc-----
Confidence 6789999999642100 0016999999999999999999999999999999999999 89999999987643210
Q ss_pred hhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh-cCccccccccccCcccccc--ccccccccCCCccceee
Q 016817 146 MEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMK--NDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~LSGGqkQ 220 (382)
.....++ .+||+||++ .+|+ .|+.+|+.+.....+ ......+++.++++.+||. +.. ++++.+|||||||
T Consensus 77 --~~~~~~~-~ig~v~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~~LSgGq~q 151 (287)
T PRK13637 77 --KLSDIRK-KVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK-DKSPFELSGGQKR 151 (287)
T ss_pred --cHHHHhh-ceEEEecCchhcccc-ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc-cCCcccCCHHHHH
Confidence 0112343 899999986 3444 799999975432211 1111224567889999996 444 5999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +..+||+++++++ +..+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tvi~vtHd~~~--~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH--KEYNMTIILVSHSMED--VAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999 999999999999999983 3458999999996655 8889999999976 4455
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++.+++.
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13637 228 TPREVFK 234 (287)
T ss_pred CHHHHHh
Confidence 5555654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=338.27 Aligned_cols=209 Identities=13% Similarity=0.097 Sum_probs=170.1
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+.+|+++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 5 ~~~l~~~~l~~~~~~~--~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-- 76 (269)
T PRK11831 5 ANLVDMRGVSFTRGNR--C----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR-- 76 (269)
T ss_pred cceEEEeCeEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccCh--
Confidence 4589999999999542 2 5999999999999999999999999999999999998 89999999986643211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
......++ .++|+||++.+|+.+|+.+|+.+....... . ....+.+.++++.+++.+... +++.+|||||||
T Consensus 77 ----~~~~~~~~-~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~q 150 (269)
T PRK11831 77 ----SRLYTVRK-RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-LMPSELSGGMAR 150 (269)
T ss_pred ----hhHHHHhh-cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHH
Confidence 11112343 799999999999888999999764211110 0 011234566788999986554 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +.++||+++++++
T Consensus 151 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tiiivsH~~~~--~~~~~d~v~~l~~ 219 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELN--SALGVTCVVVSHDVPE--VLSIADHAYIVAD 219 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhcCcEEEEEecCHHH--HHHhhCEEEEEEC
Confidence 9999999999999999999 999999999999999983 3348999999996555 8889999999976
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=301.46 Aligned_cols=208 Identities=19% Similarity=0.107 Sum_probs=176.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+++|+++.|+... +|.||+|+.++||.+.++||||+|||||+|.++-+.- .+|+..|.|.... .+ ...
T Consensus 2 sirv~~in~~yg~~q------~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd-~s--~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGAHQ------ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD-FS--KTP 72 (242)
T ss_pred ceEEcccccccccch------heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccc-cc--cCc
Confidence 367899999997765 7999999999999999999999999999999998877 7999999886432 21 122
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc---ccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH---HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..++...+|+ ++|||||.+.|+|++||.+|+-+..... .+.. ...++.++++++.|.++.+ ++|-.|||||+||
T Consensus 73 ~~k~i~~lr~-~vgmvfqqy~lwphltv~enlieap~kv-~gl~~~qa~~~a~ellkrlrl~~~ad-r~plhlsggqqqr 149 (242)
T COG4161 73 SDKAIRDLRR-NVGMVFQQYNLWPHLTVQENLIEAPCRV-LGLSKDQALARAEKLLKRLRLKPYAD-RYPLHLSGGQQQR 149 (242)
T ss_pred cHHHHHHHHH-hhhhhhhhhccCchhHHHHHHHhhhHHH-hCCCHHHHHHHHHHHHHHhccccccc-cCceecccchhhh
Confidence 3356666886 9999999999999999999997754322 2222 2345667888999997765 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+++|++|++|| +|||+-..++.++|+++ .+.|.|-++|||+.+. +.+.+.+|+.|++
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel---~~tgitqvivthev~v--a~k~as~vvyme~ 216 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL---AETGITQVIVTHEVEV--ARKTASRVVYMEN 216 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH---HhcCceEEEEEeehhH--HHhhhhheEeeec
Confidence 999999999999999999 99999999999999999 5689999999995555 9999999999987
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=326.16 Aligned_cols=208 Identities=18% Similarity=0.106 Sum_probs=166.2
Q ss_pred hHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++||+++|+++. .+ +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 2 l~~~~v~~~~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~---- 73 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTR----VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS---- 73 (221)
T ss_pred EEEEeeeEEccCCCcceE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC----
Confidence 56889999996432 22 5999999999999999999999999999999999999 8999999998764321
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
......+|++.++|++|++.+|+..|+.+|+.+....... .....+.+.++++.+|+.+... +++.+|||||||||
T Consensus 74 --~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv 150 (221)
T TIGR02211 74 --SNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-HRPSELSGGERQRV 150 (221)
T ss_pred --HhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHH
Confidence 1112223323799999999999889999999764311111 1112235667888999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +.. +|++++|++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~tH~~~~--~~~-~d~v~~l~~ 216 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN--RELNTSFLVVTHDLEL--AKK-LDRVLEMKD 216 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--Hhh-cCEEEEEeC
Confidence 99999999999999999 999999999999999983 3458999999997665 655 588888764
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=367.72 Aligned_cols=222 Identities=17% Similarity=0.134 Sum_probs=185.4
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh----------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA----------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl 93 (382)
++..|+..+......+..+..+.+|+.++++.++.. ..+..+.|+++||+|+|++++ + +|+|+||
T Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~----vL~~isl 356 (529)
T TIGR02868 282 AAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP-P----VLDGVSL 356 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCC-c----eeecceE
Confidence 467889999999999999999999999998766421 001123589999999997543 2 5999999
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRV 172 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv 172 (382)
+|++||.+||+||||||||||+|+|+|+++ ++|+|.+||.++.+. ...+|+ +++||+|++.+|+ .|+
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~----------~~~lr~-~i~~V~Q~~~lF~-~TI 424 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL----------QDELRR-RISVFAQDAHLFD-TTV 424 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH----------HHHHHh-heEEEccCccccc-ccH
Confidence 999999999999999999999999999999 899999999977533 223665 8999999999998 799
Q ss_pred hhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh--
Q 016817 173 HEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 173 ~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
+||+.+. .+...++++.++++.+++++++. +.| ..||||||||++|||||+++|+||||||
T Consensus 425 ~eNI~~g-----~~~~~~e~i~~al~~a~l~~~i~-~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T 498 (529)
T TIGR02868 425 RDNLRLG-----RPDATDEELWAALERVGLADWLR-SLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT 498 (529)
T ss_pred HHHHhcc-----CCCCCHHHHHHHHHHcCCHHHHH-hCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999642 23345667888888888876554 333 3499999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecC
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
+||++++..+.+.+.++. .++|+|+|||+
T Consensus 499 SaLD~~te~~I~~~l~~~~----~~~TvIiItHr 528 (529)
T TIGR02868 499 EHLDAGTESELLEDLLAAL----SGKTVVVITHH 528 (529)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEEecC
Confidence 999999999999999862 57999999994
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=323.46 Aligned_cols=196 Identities=16% Similarity=0.139 Sum_probs=161.5
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|+++ .. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~-~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--------- 66 (205)
T cd03226 1 RIENISFSYKKG-TE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--------- 66 (205)
T ss_pred CcccEEEEeCCc-Cc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---------
Confidence 368999999652 22 6999999999999999999999999999999999998 89999999986521
Q ss_pred hhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 147 EEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...+ +.+||+||++. .+...|+.+|+.+.... .. ...+++.++++.+++.+... ++|.+|||||||||+||
T Consensus 67 ---~~~~-~~i~~~~q~~~~~~~~~tv~e~l~~~~~~--~~-~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la 138 (205)
T cd03226 67 ---KERR-KSIGYVMQDVDYQLFTDSVREELLLGLKE--LD-AGNEQAETVLKDLDLYALKE-RHPLSLSGGQKQRLAIA 138 (205)
T ss_pred ---HHhh-cceEEEecChhhhhhhccHHHHHhhhhhh--cC-ccHHHHHHHHHHcCCchhcC-CCchhCCHHHHHHHHHH
Confidence 1123 37999999974 23357999999653211 11 12245678899999987654 99999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .+.|.|||++|||++. +..+||+++++++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 201 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIREL---AAQGKAVIVITHDYEF--LAKVCDRVLLLAN 201 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999 99999999999999998 3358999999996555 8888999988864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=324.87 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=166.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. + +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~--~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------- 67 (208)
T cd03268 1 LKTNDLTKTYGKK--R----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN------- 67 (208)
T ss_pred CEEEEEEEEECCe--E----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-------
Confidence 3578999999542 2 5999999999999999999999999999999999999 899999999865311
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...++ .++|+||++.+++..|+.+|+....... . ...+++.++++.+++.+... +++.+|||||||||+||
T Consensus 68 ----~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~-~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la 138 (208)
T cd03268 68 ----IEALR-RIGALIEAPGFYPNLTARENLRLLARLL--G-IRKKRIDEVLDVVGLKDSAK-KKVKGFSLGMKQRLGIA 138 (208)
T ss_pred ----HHHHh-hEEEecCCCccCccCcHHHHHHHHHHhc--C-CcHHHHHHHHHHcCCHHHHh-hhHhhCCHHHHHHHHHH
Confidence 11333 7999999999998899999997643211 1 12345677889999986654 89999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .++|.|+|++|||++. +..+||+++++++
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~tH~~~~--~~~~~d~v~~l~~ 201 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSL---RDQGITVLISSHLLSE--IQKVADRIGIINK 201 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999 99999999999999998 3368999999996665 8888999998875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=341.44 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=173.8
Q ss_pred hhHHHHHhhhcccCC-eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~-~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+++++|++++|+... .. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~---- 75 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKY----TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEN---- 75 (279)
T ss_pred eEEEEeEEEEcCCCCcCe----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCc----
Confidence 688999999996432 22 5999999999999999999999999999999999999 8999999998764211
Q ss_pred ehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+|+ .+||+||++. +++..|+.+|+.+.....+.. ....+++.++++.+||.+..+ ++|.+||||||||
T Consensus 76 -----~~~~~~-~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qr 148 (279)
T PRK13650 76 -----VWDIRH-KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-REPARLSGGQKQR 148 (279)
T ss_pred -----HHHHHh-hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHH
Confidence 112444 8999999973 566689999997543221111 112345678899999986654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++. ++.|+|||+||||++. +. .||+++++++ +..++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tilivtH~~~~--~~-~~dri~~l~~G~i~~~g~ 223 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIR--DDYQMTVISITHDLDE--VA-LSDRVLVMKNGQVESTST 223 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HH-hCCEEEEEECCEEEEECC
Confidence 999999999999999999 999999999999999983 3358999999997665 74 7899988876 34555
Q ss_pred ccceeeE
Q 016817 296 ISGVYDI 302 (382)
Q Consensus 296 ~~~v~~~ 302 (382)
+++++..
T Consensus 224 ~~~~~~~ 230 (279)
T PRK13650 224 PRELFSR 230 (279)
T ss_pred HHHHHcC
Confidence 6566543
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=343.43 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=174.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccc-----
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH----- 140 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~----- 140 (382)
|+++|++++|+++... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.....
T Consensus 3 i~~~~l~~~y~~~~~~-~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNIVKIFNKKLPT-ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 7789999999653210 0016999999999999999999999999999999999999 89999999876421100
Q ss_pred -----c--ee---ehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCcccccccccc
Q 016817 141 -----T--IT---MYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAE 207 (382)
Q Consensus 141 -----~--~~---~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~ 207 (382)
. .. ........+++ .+||+||++ .+|. .||.+|+.+.....+.. ....+++.++++.+||.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRR-RVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccchHHHHHh-ceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 0 00 00011223444 899999985 4554 79999997543222111 112345778899999963334
Q ss_pred ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
+++|.+|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ ++.|.|||+||||++. +.++||+
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tiiivtHd~~~--~~~~adr 234 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL---NKQGKTIILVTHDLDN--VLEWTKR 234 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeeCHHH--HHHhCCE
Confidence 59999999999999999999999999999999 99999999999999998 3468999999996665 8889999
Q ss_pred hhhhhh---cccccccceeeE
Q 016817 285 LKICEY---LGVSEISGVYDI 302 (382)
Q Consensus 285 v~ll~~---~~~~~~~~v~~~ 302 (382)
+++|++ +..+++++++..
T Consensus 235 v~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 235 TIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEEECCEEEEECCHHHHhcC
Confidence 999987 445566666643
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=323.91 Aligned_cols=204 Identities=14% Similarity=0.130 Sum_probs=166.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. . +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 68 (213)
T cd03262 1 IEIKNLHKSFGDF--H----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK------ 68 (213)
T ss_pred CEEEEEEEEECCe--E----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc------
Confidence 3578999999642 2 5999999999999999999999999999999999999 8999999998653110
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.....+++ .++|++|++.+|+.+|+.+|+.+....... .....+++.++++.+++.+... +++.+|||||+|||+
T Consensus 69 -~~~~~~~~-~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ 145 (213)
T cd03262 69 -KNINELRQ-KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-AYPAQLSGGQQQRVA 145 (213)
T ss_pred -hhHHHHHh-cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-hCccccCHHHHHHHH
Confidence 11112343 899999999999889999999764321111 1112235667888899986554 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ ++.|+|||++|||++. +.++||+++++++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tvi~~sh~~~~--~~~~~d~i~~l~~ 210 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL---AEEGMTMVVVTHEMGF--AREVADRVIFMDD 210 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999 99999999999999998 3358999999996555 8889999988764
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=331.95 Aligned_cols=211 Identities=13% Similarity=0.111 Sum_probs=169.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...... ..
T Consensus 3 ~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~ 75 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--T----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL-SQ 75 (250)
T ss_pred cEEEeceEEEECCe--e----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccc-cc
Confidence 68899999999643 2 5999999999999999999999999999999999998 899999999876422100 00
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.......+++ .++|++|++.+|+..|+.+|+.+....... . ....+++.++++.+|+.+.. ++++.+|||||||||
T Consensus 76 ~~~~~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 76 QKGLIRQLRQ-HVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-TSYPRRLSGGQQQRV 153 (250)
T ss_pred hhhHHHHhhh-hEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-hCChhhCChHHHHHH
Confidence 0001122343 799999999999889999999754221111 0 11123466778889998654 489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +..+||++++|++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~~~tvi~~tH~~~~--~~~~~d~i~~l~~ 219 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL---AQEKRTMVIVTHEMSF--ARDVADRAIFMDQ 219 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999 99999999999999998 3358999999996555 8889999999976
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=381.02 Aligned_cols=249 Identities=17% Similarity=0.137 Sum_probs=200.1
Q ss_pred eeccccchhhhhhhccCCCCccccchhHHHHHHhhhhhhc--------------CcCchhHHHHHhhhcccCCeeeecCC
Q 016817 22 WWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALI--------------APDGLNELRHKFLSYRSGDFWIPIGG 87 (382)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~i~nvs~~y~~~~~~v~~~v 87 (382)
..++..|+.+++.....++.+..+.+|+.++++.++.... ...+.|+++||+|+|++..++ +
T Consensus 419 ~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~----v 494 (710)
T TIGR03796 419 MSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPP----L 494 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCC----c
Confidence 3467899999999999999999999999999987643110 012468999999999864333 6
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
|+|+||+|++||.+||+||||||||||+|+|+|+++ ++|+|.+||.++.+.. ...+|+ .+|||+|++.+
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~---------~~~lr~-~i~~v~Q~~~l 564 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP---------REVLAN-SVAMVDQDIFL 564 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC---------HHHHHh-heeEEecCChh
Confidence 999999999999999999999999999999999999 8999999999775432 223665 99999999999
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHH
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIY 235 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iL 235 (382)
|+ .|++||+... .+...++++.++++.+++.+.+. +. ...||||||||++|||||+++|++|
T Consensus 565 f~-gTi~eNi~l~-----~~~~~~~~i~~al~~~~l~~~i~-~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~il 637 (710)
T TIGR03796 565 FE-GTVRDNLTLW-----DPTIPDADLVRACKDAAIHDVIT-SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSIL 637 (710)
T ss_pred hh-ccHHHHhhCC-----CCCCCHHHHHHHHHHhCCHHHHH-hCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 97 7999999532 22344566777788777765443 32 2459999999999999999999999
Q ss_pred HHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 236 KALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 236 LLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|||| +||+.++..+.+.|++ .++|+|+||| +++.+.. +|+|++|++ +..|+.++++
T Consensus 638 iLDEptS~LD~~te~~i~~~l~~------~~~T~IiitH--rl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 638 ILDEATSALDPETEKIIDDNLRR------RGCTCIIVAH--RLSTIRD-CDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred EEECccccCCHHHHHHHHHHHHh------cCCEEEEEec--CHHHHHh-CCEEEEEeCCEEEEecCHHHHH
Confidence 9999 9999999999999875 3799999999 5554664 788888876 4445444443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=341.18 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=162.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++... ...+|+ .+||++|++.
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------~~~~~~-~i~~~~q~~~ 76 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE----------PRKVRR-SIGIVPQYAS 76 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC----------HHHHHh-hcEEecCCCC
Confidence 6999999999999999999999999999999999998 899999999865321 112343 7999999999
Q ss_pred CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 166 GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+++.+|+.+|+.+.....+.. ....+++.++++.+++.+... +++.+|||||||||+|||||+.+|++||||| +|
T Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999999999997654322111 112345678899999986654 9999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
|+.++..+++.|+++ +++|+|||++|||++. +.++||++++|++ +..+++.++
T Consensus 156 D~~~~~~l~~~l~~~---~~~g~tvi~~sH~~~~--~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 156 DPRTRRAIWDYIRAL---KEEGVTILLTTHYMEE--ADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred CHHHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999998 3458999999996555 9999999999986 334444443
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=335.13 Aligned_cols=206 Identities=17% Similarity=0.114 Sum_probs=168.0
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
.++|+++.|+... +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 26 ~~~~~~~~~~~~~------il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~------ 93 (269)
T cd03294 26 SKEEILKKTGQTV------GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSR------ 93 (269)
T ss_pred hhhhhhhhcCCce------EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccCh------
Confidence 6779999996543 5999999999999999999999999999999999999 89999999987643211
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
.....++.+.++|++|++.+|+.+|+.+|+.+...... ......+++.++++.+++.+... +++.+|||||||||+||
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELSGGMQQRVGLA 172 (269)
T ss_pred hhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CCcccCCHHHHHHHHHH
Confidence 11111222379999999999988999999976432111 11112245667889999986654 99999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +.++||++++|++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tiii~tH~~~~--~~~~~d~v~~l~~ 236 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ--AELQKTIVFITHDLDE--ALRLGDRIAIMKD 236 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999 999999999999999983 3458999999996555 8889999999876
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=322.03 Aligned_cols=219 Identities=12% Similarity=0.078 Sum_probs=177.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++..|+... +|++|||++++||+++|+||||+|||||+|+|+|+.+ .+|+|.++|+|+...+..
T Consensus 2 ~mL~v~~l~~~YG~~~------~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~-- 73 (237)
T COG0410 2 PMLEVENLSAGYGKIQ------ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH-- 73 (237)
T ss_pred CceeEEeEeeccccee------EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHH--
Confidence 5789999999996533 6999999999999999999999999999999999999 799999999988754422
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccc-ccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-MKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~LSGGqkQRv 222 (382)
+ ..|. .++||||.-.+|+.+||.||+.................+++.+.|- |.+.. +++..+|||||||.+
T Consensus 74 ----~--r~r~-Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~-~~~aG~LSGGEQQML 145 (237)
T COG0410 74 ----E--RARL-GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERR-NQRAGTLSGGEQQML 145 (237)
T ss_pred ----H--HHhC-CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHh-cCcccCCChHHHHHH
Confidence 2 2343 8999999999999999999997654322110111111444555553 44443 488899999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
||||||+.+|++||||| +|-|.-..+|.+.|+++. ++.|.||++|.++.+. +.+++|+.++|.+ +.+++.
T Consensus 146 AiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~--~~~g~tIlLVEQn~~~--Al~iaDr~yvle~Griv~~G~~ 221 (237)
T COG0410 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR--KEGGMTILLVEQNARF--ALEIADRGYVLENGRIVLSGTA 221 (237)
T ss_pred HHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHH--HcCCcEEEEEeccHHH--HHHhhCEEEEEeCCEEEEecCH
Confidence 99999999999999999 999999999999999993 4558899999996666 9999999999987 566666
Q ss_pred cceeeEE
Q 016817 297 SGVYDIV 303 (382)
Q Consensus 297 ~~v~~~~ 303 (382)
+++.+.+
T Consensus 222 ~eL~~~~ 228 (237)
T COG0410 222 AELLADP 228 (237)
T ss_pred HHHhcCH
Confidence 6665443
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=345.57 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=177.5
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccc-
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH- 140 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~- 140 (382)
..++|+++|++++|+.+... ..++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++.+...
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~-~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQEN-ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCcc-cccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 34689999999999643100 0016999999999999999999999999999999999999 89999999987643100
Q ss_pred --c-e---eehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCcccccccccccccc
Q 016817 141 --T-I---TMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 141 --~-~---~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
. . .........+|+ .+||+||++ .+|+ .|+.+|+.+........ ....+++.++++.+++.+...++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRR-RVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHh-cEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 0 0 000011223454 899999987 5776 59999996543211111 1112356678889999632334899
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ .++|.|||+||||++. +..+||++++|
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l---~~~g~TiiivtHd~~~--~~~~adri~vl 249 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDA---KANNKTVFVITHTMEH--VLEVADEVIVM 249 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3358999999996655 88889999999
Q ss_pred hh---cccccccceeeEE
Q 016817 289 EY---LGVSEISGVYDIV 303 (382)
Q Consensus 289 ~~---~~~~~~~~v~~~~ 303 (382)
++ +..+++++++..+
T Consensus 250 ~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 250 DKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred ECCEEEEeCCHHHHhcCH
Confidence 87 5556666666543
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=330.30 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=167.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||++++||+++|+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 1 ~l~~~~l~~~~~~~--~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----- 69 (240)
T PRK09493 1 MIEFKNVSKHFGPT--Q----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK----- 69 (240)
T ss_pred CEEEEeEEEEECCe--E----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-----
Confidence 46788999999642 2 5999999999999999999999999999999999998 8999999998764211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.....+++ .++|++|++.+++.+|+.+|+.+....... .....+.+.++++.+|+.+.++ +++.+|||||||||
T Consensus 70 --~~~~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv 145 (240)
T PRK09493 70 --VDERLIRQ-EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-HYPSELSGGQQQRV 145 (240)
T ss_pred --hhHHHHhh-ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-cChhhcCHHHHHHH
Confidence 01112343 799999999999889999999654211111 1112245667888999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||++|||++. +..+||+++++++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 211 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL---AEEGMTMVIVTHEIGF--AEKVASRLIFIDK 211 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999 99999999999999998 3358999999996655 8888999999976
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=342.29 Aligned_cols=209 Identities=13% Similarity=0.110 Sum_probs=172.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. . +|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 3 l~~~~l~~~~~~~--~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~------ 70 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--N----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP------ 70 (301)
T ss_pred EEEEEEEEEECCE--E----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh------
Confidence 6789999999642 2 5999999999999999999999999999999999999 8999999998654211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+++ .+||+||++.+|+.+|+.+|+.+....++.. ....+++.++++.+|+.+..+ +++.+|||||||||+|
T Consensus 71 ----~~~~~-~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~l 144 (301)
T TIGR03522 71 ----KEVQR-NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-KKIGQLSKGYRQRVGL 144 (301)
T ss_pred ----HHHHh-ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CchhhCCHHHHHHHHH
Confidence 12344 8999999999999999999997654322211 112345677899999987654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+.+|++||||| +||+.++..+++.|+++ + .++|||++||+++. +.++||+++++++ +..++..+
T Consensus 145 a~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~---~-~~~tiii~sH~l~~--~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 145 AQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI---G-KDKTIILSTHIMQE--VEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh---c-CCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999 99999999999999998 3 36999999995554 9999999999976 33444444
Q ss_pred e
Q 016817 299 V 299 (382)
Q Consensus 299 v 299 (382)
+
T Consensus 219 ~ 219 (301)
T TIGR03522 219 L 219 (301)
T ss_pred H
Confidence 3
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=337.98 Aligned_cols=205 Identities=15% Similarity=0.137 Sum_probs=167.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 3 ~~l~~~~l~~~~~~~~-~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---- 73 (274)
T PRK13647 3 NIIEVEDLHFRYKDGT-K----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN---- 73 (274)
T ss_pred ceEEEEEEEEEeCCCC-e----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC----
Confidence 3688999999996332 2 6999999999999999999999999999999999999 8999999998764221
Q ss_pred ehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+++ .+||+||++. .++..|+.+|+.+....... .....+++.++++.+++.+... ++|.+||||||||
T Consensus 74 -----~~~~~~-~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgG~~qr 146 (274)
T PRK13647 74 -----EKWVRS-KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-KPPYHLSYGQKKR 146 (274)
T ss_pred -----HHHHHh-hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CChhhCCHHHHHH
Confidence 111333 7999999973 33457999999754321111 1112245677889999986654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..++++|+++. ++|.|||++|||++. +.++||++++|++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~g~tili~tH~~~~--~~~~~d~i~~l~~ 213 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLH---NQGKTVIVATHDVDL--AAEWADQVIVLKE 213 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH---HCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 999999999999999983 358999999996665 8889999999987
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=325.87 Aligned_cols=213 Identities=17% Similarity=0.108 Sum_probs=169.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++++|++++|+.+.... ++|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~--- 78 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHEL--SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD--- 78 (228)
T ss_pred CceEEEeeeEEEccCCCcce--EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCC---
Confidence 35899999999997532110 15999999999999999999999999999999999998 8999999998664321
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
......++.+.++|++|++.+++.+|+.+|+.+....... .....+++.++++.+++.+... +++.+||||||||
T Consensus 79 ---~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qr 154 (228)
T PRK10584 79 ---EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQLSGGEQQR 154 (228)
T ss_pred ---HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHH
Confidence 1112223334799999999999988999999754311111 1112345677889999986654 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +.. ||+++++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~-~d~i~~l~~ 221 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLN--REHGTTLILVTHDLQL--AAR-CDRRLRLVN 221 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHh-CCEEEEEEC
Confidence 999999999999999999 999999999999999983 3458999999997665 654 788888865
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=333.11 Aligned_cols=215 Identities=12% Similarity=0.060 Sum_probs=172.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++++|+++.|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.......
T Consensus 3 ~~~l~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH--E----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred CccEEEeeeEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccc
Confidence 4578999999999642 2 5999999999999999999999999999999999999 8999999998764211100
Q ss_pred e----ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCcc
Q 016817 143 T----MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 143 ~----~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
. ....+...+++ .++|++|++.+++.+|+.+|+.+....... .....+++.++++.+|+.+...++++.+|||
T Consensus 77 ~~~~~~~~~~~~~~~~-~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 77 GQLKVADKNQLRLLRT-RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred cccccccchHHHHHhh-ceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 0 01112223444 899999999999889999999753321111 1112345677889999986543488999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|+|||+||||++. +..+||+++++++
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l---~~~g~tiiivsH~~~~--~~~~~d~i~~l~~ 227 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL---AEEGKTMVVVTHEMGF--ARHVSSHVIFLHQ 227 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999999999 99999999999999998 3358999999996655 8888999999976
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=339.25 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=173.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++||+++|+.+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 3 l~~~~l~~~y~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~----- 76 (286)
T PRK13646 3 IRFDNVSYTYQKGTPY-EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK----- 76 (286)
T ss_pred EEEEEEEEEECCCCcc-ccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc-----
Confidence 6789999999642200 0026999999999999999999999999999999999999 89999999997643210
Q ss_pred hhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 146 MEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
......+|+ .+||+||++ .+|+ .|+.+|+.+.....+.. ....+++.++++.+||.....++++.+|||||||||
T Consensus 77 ~~~~~~~~~-~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 77 DKYIRPVRK-RIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred cchHHHHHh-heEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 011222454 899999986 4665 69999997643221111 112345677888999963334489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.++|+++. ++.|+|||+||||++. +.++||++++|++ +..+++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tvl~vtH~~~~--~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ--TDENKTIILVSHDMNE--VARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999 999999999999999983 3458999999996665 8889999999986 445555
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
.+++.
T Consensus 231 ~~~~~ 235 (286)
T PRK13646 231 KELFK 235 (286)
T ss_pred HHHHh
Confidence 55654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=333.69 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=165.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 1 ml~~~~l~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------ 68 (255)
T PRK11248 1 MLQISHLYADYGGK--P----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP------ 68 (255)
T ss_pred CEEEEEEEEEeCCe--e----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC------
Confidence 46789999999642 2 5999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
+ ..+||++|++.+++..|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+
T Consensus 69 --------~-~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrl~ 138 (255)
T PRK11248 69 --------G-AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVG 138 (255)
T ss_pred --------C-CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHH
Confidence 1 25899999999998899999996542211111 111245677889999986554 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +..+||++++++
T Consensus 139 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~g~tviivsH~~~~--~~~~~d~i~~l~ 203 (255)
T PRK11248 139 IARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW--QETGKQVLLITHDIEE--AVFMATELVLLS 203 (255)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEe
Confidence 9999999999999999 999999999999999973 3358999999996665 888999999996
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=323.47 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=164.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++. + +|+|+||+|++| +++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 i~~~~~~~~~~~~--~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------ 67 (211)
T cd03264 1 LQLENLTKRYGKK--R----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP------ 67 (211)
T ss_pred CEEEEEEEEECCE--E----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch------
Confidence 4578999999543 2 599999999999 999999999999999999999999 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+++ .++|++|++.+|+.+|+.+|+.+........ ....+.+.++++.+++.+..+ +++.+|||||||||+|
T Consensus 68 ----~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~l 141 (211)
T cd03264 68 ----QKLRR-RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-KKIGSLSGGMRRRVGI 141 (211)
T ss_pred ----HHHHh-heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-CchhhCCHHHHHHHHH
Confidence 12344 8999999999999889999997643211111 111245667888999986654 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +.+++|+++++++
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~vsH~~~~--~~~~~d~i~~l~~ 204 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG---E-DRIVILSTHIVED--VESLCNQVAVLNK 204 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---C-CCEEEEEcCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 999999999999999983 2 5899999996665 8888999998875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=323.23 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=161.0
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 1 ~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------- 64 (213)
T cd03235 1 EVEDLTVSYGGH--P----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------- 64 (213)
T ss_pred CcccceeEECCE--E----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----------
Confidence 368999999642 2 5999999999999999999999999999999999998 8999999997531
Q ss_pred hhhhhHhhhccceeeEeCCCC--ChhhhhhhHHHHHhhhhc-----CccccccccccCccccccccccccccCCCcccee
Q 016817 147 EEHNVMRSLQSGFCVYDSRGF--NYNRVHEGLEELSSWMSE-----GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~--~~~tv~eni~~~~~~~~~-----~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
..++ .++|++|++.++ ...|+.+|+......... .....+++.++++.+++.+... +++.+||||||
T Consensus 65 ----~~~~-~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~ 138 (213)
T cd03235 65 ----KERK-RIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-RQIGELSGGQQ 138 (213)
T ss_pred ----HHHh-heEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHH
Confidence 1333 799999998763 237999999653211100 0112245677888999986554 89999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++|.|||+||||++. +.++||++++|++
T Consensus 139 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~~tvi~~sH~~~~--~~~~~d~i~~l~~ 207 (213)
T cd03235 139 QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR---REGMTILVVTHDLGL--VLEYFDRVLLLNR 207 (213)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH--HHHhcCEEEEEcC
Confidence 99999999999999999999 999999999999999983 368999999996555 8889999998875
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=378.09 Aligned_cols=240 Identities=18% Similarity=0.176 Sum_probs=198.3
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh--------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
+++..|+..++.....++.+..+.+|+.++++.++... ....+.|+++||+|+|++...+ +|+|+||+
T Consensus 412 ~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~----vL~~i~l~ 487 (694)
T TIGR03375 412 GRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETP----ALDNVSLT 487 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCcc----ceeeeeEE
Confidence 46789999999999999999999999999998765311 0112468999999999754333 59999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++.+.+. ..+|+ .++||+|++.+|+ .|++
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~---------~~lr~-~i~~v~Q~~~lf~-~TI~ 556 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP---------ADLRR-NIGYVPQDPRLFY-GTLR 556 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH---------HHHHh-ccEEECCChhhhh-hhHH
Confidence 99999999999999999999999999999 89999999998764432 23565 8999999999998 7999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
||+... .+..+++++.++++.+++.+.+. +.| ..||||||||++|||||+++|++|||||
T Consensus 557 eNi~~~-----~~~~~~~~i~~a~~~~~l~~~i~-~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts 630 (694)
T TIGR03375 557 DNIALG-----APYADDEEILRAAELAGVTEFVR-RHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630 (694)
T ss_pred HHHhCC-----CCCCCHHHHHHHHHHcChHHHHH-hCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999532 22344566777888888766543 333 3599999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||++++..+.+.|.++. +++|+|+|||+ ++.+. .||+|++|++
T Consensus 631 ~LD~~te~~i~~~l~~~~----~~~T~iiItHr--l~~~~-~~D~iivl~~ 674 (694)
T TIGR03375 631 AMDNRSEERFKDRLKRWL----AGKTLVLVTHR--TSLLD-LVDRIIVMDN 674 (694)
T ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEEecC--HHHHH-hCCEEEEEeC
Confidence 999999999999999873 57999999994 54464 6788888876
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=323.81 Aligned_cols=198 Identities=16% Similarity=0.143 Sum_probs=164.7
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++. . +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~--~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-------- 66 (210)
T cd03269 1 LEVENVTKRFGRV--T----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-------- 66 (210)
T ss_pred CEEEEEEEEECCE--E----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--------
Confidence 3578999999532 2 5999999999999999999999999999999999998 89999999985421
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..++ .++|++|++.+++..|+.+|+......... .....+.+.++++.+++.+... +++.+|||||||||+|
T Consensus 67 -----~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~l 139 (210)
T cd03269 67 -----AARN-RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQF 139 (210)
T ss_pred -----HHHc-cEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-CcHhhCCHHHHHHHHH
Confidence 1333 799999999999889999999764322111 1112345677888999986554 8899999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +.++||+++++++
T Consensus 140 a~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~---~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 203 (210)
T cd03269 140 IAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL---ARAGKTVILSTHQMEL--VEELCDRVLLLNK 203 (210)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEECCCHHH--HHHhhhEEEEEeC
Confidence 999999999999999 99999999999999997 3358999999996655 8888999988875
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=369.29 Aligned_cols=241 Identities=15% Similarity=0.141 Sum_probs=195.2
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhh------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
..+..|+..++.....++.+..+.+|+.++++.++.. .....+.|+++||+|+|+++..+ +|+|+||+|+
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~----il~~i~l~i~ 367 (582)
T PRK11176 292 IALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVP----ALRNINFKIP 367 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCCc----cccCceEEeC
Confidence 3567899999999999999999999999988765431 11112469999999999754333 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+|+.+||+||||||||||+++|+|+++ ++|+|.+||+++.+... ..+|+ .|+|++|++.+|+ .|+++|
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~---------~~~~~-~i~~v~Q~~~lf~-~Ti~~N 436 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL---------ASLRN-QVALVSQNVHLFN-DTIANN 436 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH---------HHHHh-hceEEccCceeec-chHHHH
Confidence 999999999999999999999999999 89999999997754321 22555 8999999999998 799999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.... ....+++++.++++.+++.+.+. +.| ..||||||||++|||||+++|++||||| +|
T Consensus 437 i~~~~----~~~~~~~~i~~al~~~~l~~~i~-~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaL 511 (582)
T PRK11176 437 IAYAR----TEQYSREQIEEAARMAYAMDFIN-KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511 (582)
T ss_pred HhcCC----CCCCCHHHHHHHHHHhCcHHHHH-hcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccC
Confidence 95421 11234567777888887765433 222 3499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.+...+.+.|.++. .++|+|+|||++.. +. .||+|+++++
T Consensus 512 D~~t~~~i~~~l~~~~----~~~tvI~VtHr~~~--~~-~~D~Ii~l~~ 553 (582)
T PRK11176 512 DTESERAIQAALDELQ----KNRTSLVIAHRLST--IE-KADEILVVED 553 (582)
T ss_pred CHHHHHHHHHHHHHHh----CCCEEEEEecchHH--HH-hCCEEEEEEC
Confidence 9999999999999872 47999999995533 54 5888888876
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=348.63 Aligned_cols=239 Identities=17% Similarity=0.152 Sum_probs=186.5
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhh------hhhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMER------LALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
+.+..|+..++.....+.++..-+.......+.+. .+....++.|+|+||+++|+++.+ +|+++||+|+
T Consensus 302 ~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~dV~f~y~~k~~-----iL~gvsf~I~ 376 (591)
T KOG0057|consen 302 FQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFSYGPKRK-----VLKGVSFTIP 376 (591)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEEeeEEEeCCCCc-----eecceeEEec
Confidence 33445555555555444433333322222211111 123334567999999999986542 6999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
+||.+||+|+|||||||++|+|.++++.+|+|++||+++++... ..+|+ .|||||||..||+ .||..||
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~---------~SlR~-~Ig~VPQd~~LFn-dTIl~NI 445 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSL---------ESLRQ-SIGVVPQDSVLFN-DTILYNI 445 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhCh---------HHhhh-heeEeCCcccccc-hhHHHHh
Confidence 99999999999999999999999999999999999998865442 23676 8999999999998 7999999
Q ss_pred HHHHhhhhcCccccccccccCccccccccccccccCC-----------CccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------SPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
.+ +......+++.++.+++++.+.+. +.|.+ |||||||||+||||++++|+|+++|| +||
T Consensus 446 ~Y-----Gn~sas~eeV~e~~k~a~~hd~i~-~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD 519 (591)
T KOG0057|consen 446 KY-----GNPSASDEEVVEACKRAGLHDVIS-RLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALD 519 (591)
T ss_pred hc-----CCCCcCHHHHHHHHHHcCcHHHHH-hccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccc
Confidence 54 345556778888999999987666 66554 99999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.+++..+++.+.+.. .|+|+|+|.|++++ +.. +|+|+++++
T Consensus 520 ~~TE~~i~~~i~~~~----~~rTvI~IvH~l~l--l~~-~DkI~~l~n 560 (591)
T KOG0057|consen 520 SETEREILDMIMDVM----SGRTVIMIVHRLDL--LKD-FDKIIVLDN 560 (591)
T ss_pred hhhHHHHHHHHHHhc----CCCeEEEEEecchh--Hhc-CCEEEEEEC
Confidence 999999999999853 68999999996555 775 566666665
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=328.10 Aligned_cols=202 Identities=16% Similarity=0.100 Sum_probs=164.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 ~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~---- 70 (236)
T TIGR03864 1 ALEVAGLSFAYGAR--R----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR---- 70 (236)
T ss_pred CEEEEeeEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh----
Confidence 36788999999642 2 5999999999999999999999999999999999998 89999999986542210
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..++ .++|++|++.+++.+|+.+|+......... .....+.+.++++.+|+.+.+. +++.+||||||||++
T Consensus 71 ------~~~~-~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~ 142 (236)
T TIGR03864 71 ------AALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERAD-DKVRELNGGHRRRVE 142 (236)
T ss_pred ------hhhh-hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHH
Confidence 1222 799999999888889999999654321110 0112234667888899986654 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. +++|.|+|++|||++. +.. ||++++|++
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~-~d~i~~l~~ 207 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC--RDQGLSVLWATHLVDE--IEA-DDRLVVLHR 207 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEecChhh--Hhh-CCEEEEEeC
Confidence 9999999999999999 999999999999999983 3358999999997666 764 899988876
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=376.98 Aligned_cols=240 Identities=16% Similarity=0.150 Sum_probs=194.8
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh--------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
.++..|+.+++.+...++.+..+.+|+.++++.++... ....+.|+++||+|+|+.+. + +|+|+||+
T Consensus 422 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~----iL~~isl~ 496 (708)
T TIGR01193 422 SYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGS-N----ILSDISLT 496 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCC-c----ceeceeEE
Confidence 46778999999999999999999999999987654311 11234689999999997432 2 69999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++|+.+||+||||||||||+++|+|+++ ++|+|++||.++.+.. ...+|+ ++|||+|++.+|+ .|++
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~---------~~~lr~-~i~~v~Q~~~lf~-gTI~ 565 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID---------RHTLRQ-FINYLPQEPYIFS-GSIL 565 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC---------HHHHHH-heEEEecCceehh-HHHH
Confidence 99999999999999999999999999999 8999999999775433 223665 8999999999998 7999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccc------c----cccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE------I----DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~------~----~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||+.... ....+++++.++++.+++.+++. + .....||||||||++|||||+++|++||||| +
T Consensus 566 eNi~l~~----~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~ 641 (708)
T TIGR01193 566 ENLLLGA----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641 (708)
T ss_pred HHHhccC----CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 9996421 12234456677777777765433 0 2234599999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.++..+.+.|+++ +|+|+|+|||++ +.+. .+|+|++|++
T Consensus 642 LD~~te~~i~~~L~~~-----~~~T~IiitHr~--~~~~-~~D~i~~l~~ 683 (708)
T TIGR01193 642 LDTITEKKIVNNLLNL-----QDKTIIFVAHRL--SVAK-QSDKIIVLDH 683 (708)
T ss_pred CCHHHHHHHHHHHHHh-----cCCEEEEEecch--HHHH-cCCEEEEEEC
Confidence 9999999999999875 478999999954 4364 6888888876
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=327.93 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=167.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. .. +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~-~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----- 70 (242)
T cd03295 1 IEFENVTKRYGGG-KK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP----- 70 (242)
T ss_pred CEEEEEEEEeCCc-ce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh-----
Confidence 3578999999752 22 5999999999999999999999999999999999999 89999999986642211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccc-cccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKN-DAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSGGqkQRva 223 (382)
..+++ .++|++|++.+|+.+|+.+|+.+........ ....+.+.++++.+++.+ ...++++.+|||||||||+
T Consensus 71 ----~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~ 145 (242)
T cd03295 71 ----VELRR-KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVG 145 (242)
T ss_pred ----HHhhc-ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHH
Confidence 11343 7999999999998899999997643221111 112245677888999985 2334899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 146 laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~--~~~g~tvii~sH~~~~--~~~~~d~i~~l~~ 211 (242)
T cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ--QELGKTIVFVTHDIDE--AFRLADRIAIMKN 211 (242)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999 999999999999999983 3348999999996554 8889999999986
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=350.95 Aligned_cols=248 Identities=14% Similarity=0.096 Sum_probs=203.0
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhhh-------hcCcCch--hHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA-------LIAPDGL--NELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
|.+|++.++..+++-.++.++.+.+..+++.+... .....+- ++++|+++.|++++ + +++|+||++
T Consensus 270 ff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~----~l~~l~~t~ 344 (559)
T COG4988 270 FFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-P----ALSDLNLTI 344 (559)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-c----ccCCceeEe
Confidence 67899999999999999988889999888887641 1112223 44559999998875 2 699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|+.+||||+||||||||+++|+|+.+ ++|+|.+||.++.+.+.. .+|+ +++||+|+|.+|+ .|++|
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~---------~~~k-~i~~v~Q~p~lf~-gTire 413 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE---------AWRK-QISWVSQNPYLFA-GTIRE 413 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHH---------HHHh-HeeeeCCCCcccc-ccHHH
Confidence 9999999999999999999999999999 999999999987655432 2564 9999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCccccccccccc-----cccC----CCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEI-----DDLK----SSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~----~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
|+.+. .....++.+.++++.+++.++..+ ..+. .|||||+|||++||||+.+++++|+|| +||
T Consensus 414 Ni~l~-----~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 414 NILLA-----RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred Hhhcc-----CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCC
Confidence 99543 344567788889999998876651 1122 399999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
.+++..|++.|.++. +++|+|+|||++.. +. -+|+|++|++ +..+..++.+
T Consensus 489 ~etE~~i~~~l~~l~----~~ktvl~itHrl~~--~~-~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 489 AETEQIILQALQELA----KQKTVLVITHRLED--AA-DADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HhHHHHHHHHHHHHH----hCCeEEEEEcChHH--Hh-cCCEEEEecCCceeccCCHHHHh
Confidence 999999999999984 56999999994443 65 4677777776 6666665554
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=331.62 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=167.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|+++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~~~------il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~------ 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGERT------VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA------ 77 (257)
T ss_pred CCcEEEEEEEEEECCcc------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH------
Confidence 45799999999996432 5999999999999999999999999999999999998 8999999887431
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.++ +.++|++|++.+|+..|+.+|+.+.. .. ...+++.++++.+++.+... +++.+|||||||||
T Consensus 78 --------~~~-~~i~~v~q~~~l~~~~tv~enl~~~~----~~-~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqrl 142 (257)
T PRK11247 78 --------EAR-EDTRLMFQDARLLPWKKVIDNVGLGL----KG-QWRDAALQALAAVGLADRAN-EWPAALSGGQKQRV 142 (257)
T ss_pred --------Hhh-CceEEEecCccCCCCCcHHHHHHhcc----cc-hHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHH
Confidence 123 37999999999998899999996531 01 12345677889999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||+++++++
T Consensus 143 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~~~tviivsHd~~~--~~~~~d~i~~l~~ 209 (257)
T PRK11247 143 ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW--QQHGFTVLLVTHDVSE--AVAMADRVLLIEE 209 (257)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999 999999999999999973 3458999999996665 8889999999976
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=328.73 Aligned_cols=203 Identities=18% Similarity=0.146 Sum_probs=165.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~~ 139 (382)
+++++|++++|+... +|+|+||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGEKE------ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECCee------eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 467899999996432 5999999999999999999999999999999999998 7 999999998764211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCcccccc----ccccccccCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMK----NDAEIDDLKS 213 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~----~~~~~~~~~~ 213 (382)
......++ .++|+||++.+|+ .|+.+|+.+....... . ....+.+.++++.+|+. +.. ++++.+
T Consensus 75 -------~~~~~~~~-~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 144 (247)
T TIGR00972 75 -------IDVVELRR-RVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRL-HDSALG 144 (247)
T ss_pred -------cchHHHHh-heEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHh-hCCccc
Confidence 01112343 8999999999998 9999999754321110 0 11124566788889997 444 488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. + +.|||+||||++. +..+||++++|++
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tiiivsH~~~~--~~~~~d~i~~l~~ 218 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK---K-KYTIVIVTHNMQQ--AARISDRTAFFYD 218 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---h-cCeEEEEecCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999 999999999999999983 3 4899999996555 8889999999986
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=329.88 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=167.8
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|+++.|++. + +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 4 ~~l~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--- 74 (255)
T PRK11300 4 PLLSVSGLMMRFGGL--L----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG--- 74 (255)
T ss_pred ceEEEeeEEEEECCE--E----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH---
Confidence 478999999999642 2 5999999999999999999999999999999999999 89999999987643211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-------h-cC------c--cccccccccCcccccccccc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-------S-EG------V--HHNQRCLRSDDCALMKNDAE 207 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-------~-~~------~--~~~~~~~~~l~~~~L~~~~~ 207 (382)
.. .++..++|+||++.+|+.+|+.+|+.+..... . .. . ...+.+.++++.+|+.+...
T Consensus 75 ---~~---~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 148 (255)
T PRK11300 75 ---HQ---IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN 148 (255)
T ss_pred ---HH---HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh
Confidence 11 12236899999999999899999997642100 0 00 0 01124556788899976654
Q ss_pred ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|.++. ++.|.|||++|||++. +..+||+
T Consensus 149 -~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~--~~~~~tii~~sH~~~~--~~~~~d~ 223 (255)
T PRK11300 149 -RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR--NEHNVTVLLIEHDMKL--VMGISDR 223 (255)
T ss_pred -CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH--hhcCCEEEEEeCCHHH--HHHhCCE
Confidence 9999999999999999999999999999999 999999999999999983 3348999999996555 8889999
Q ss_pred hhhhhh
Q 016817 285 LKICEY 290 (382)
Q Consensus 285 v~ll~~ 290 (382)
++++++
T Consensus 224 i~~l~~ 229 (255)
T PRK11300 224 IYVVNQ 229 (255)
T ss_pred EEEEEC
Confidence 999876
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=328.71 Aligned_cols=204 Identities=13% Similarity=0.098 Sum_probs=167.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|.++...+.
T Consensus 3 ~l~~~~l~~~~~~~--~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---- 72 (241)
T PRK10895 3 TLTAKNLAKAYKGR--R----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL---- 72 (241)
T ss_pred eEEEeCcEEEeCCE--E----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----
Confidence 67889999999642 2 5999999999999999999999999999999999998 89999999987643211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
. ...|+ .++|++|++.+++.+|+.+|+......... .....+.+.++++.+++.+... +++.+|||||||||
T Consensus 73 --~--~~~~~-~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv 146 (241)
T PRK10895 73 --H--ARARR-GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD-SMGQSLSGGERRRV 146 (241)
T ss_pred --H--HHHHh-CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh-cchhhCCHHHHHHH
Confidence 1 11233 799999999999889999999654211110 1111234667788889976544 88999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.++++ .++|.|||++|||++. +.++||+++++++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiii~sH~~~~--~~~~~d~v~~l~~ 212 (241)
T PRK10895 147 EIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL---RDSGLGVLITDHNVRE--TLAVCERAYIVSQ 212 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhcCCEEEEEEcCHHH--HHHhcCEEEEEeC
Confidence 99999999999999999 99999999999999987 3468999999996654 8889999999876
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=321.99 Aligned_cols=210 Identities=17% Similarity=0.111 Sum_probs=164.4
Q ss_pred hhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++||+++|++.. .+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-- 74 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVK----ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSR-- 74 (228)
T ss_pred CeEEEeeeEeccCCCccee----eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccch--
Confidence 367889999996431 12 5999999999999999999999999999999999998 89999999987643211
Q ss_pred eehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCcccc--cc-ccccCccccccccccccccCCCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGVHHN--QR-CLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~--~~-~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
.....+|+ .++|++|++ .+++.+|+.+|+.+............ +. +.++++.+++.....++++.+||||
T Consensus 75 ----~~~~~~~~-~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 75 ----RLRKIRRK-EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGG 149 (228)
T ss_pred ----hhHHHhhc-cEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHH
Confidence 01112343 899999998 46667899999975432211111111 11 2367788888532234899999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 221 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQ--EELGLTLLFITHDLGV--VAKIADRVAVMYA 221 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhcCeEEEEeC
Confidence 9999999999999999999999 999999999999999983 3348999999996655 8888999998875
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=345.13 Aligned_cols=214 Identities=15% Similarity=0.092 Sum_probs=172.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+.....
T Consensus 1 ~l~~-~l~k~~~~~-------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~-- 69 (352)
T PRK11144 1 MLEL-NFKQQLGDL-------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI-- 69 (352)
T ss_pred CeEE-EEEEEeCCE-------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc--
Confidence 3556 889999542 14 8999999999999999999999999999999998 8999999998764321100
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.....+ +.+||+||++.+|+++|+.+|+.+... ....+++.++++.+++.+..+ ++|.+|||||||||+|
T Consensus 70 ---~~~~~~-~~i~~v~q~~~l~~~~tv~enl~~~~~-----~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qRval 139 (352)
T PRK11144 70 ---CLPPEK-RRIGYVFQDARLFPHYKVRGNLRYGMA-----KSMVAQFDKIVALLGIEPLLD-RYPGSLSGGEKQRVAI 139 (352)
T ss_pred ---ccchhh-CCEEEEcCCcccCCCCcHHHHHHhhhh-----hhhHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHH
Confidence 011123 389999999999999999999965321 122345778899999986654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+.+|++||||| +||+.++..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++++
T Consensus 140 araL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~--~~~g~tii~vTHd~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 140 GRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA--REINIPILYVSHSLDE--ILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCeEEEEecCHHH--HHHhCCEEEEEeCCEEEEecCHHH
Confidence 999999999999999 999999999999999983 4458999999996554 8899999999987 44555566
Q ss_pred eeeEEE
Q 016817 299 VYDIVC 304 (382)
Q Consensus 299 v~~~~~ 304 (382)
++..+.
T Consensus 216 i~~~p~ 221 (352)
T PRK11144 216 VWASSA 221 (352)
T ss_pred HHhCcc
Confidence 665443
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=330.27 Aligned_cols=220 Identities=17% Similarity=0.157 Sum_probs=172.4
Q ss_pred hhHHHHHhhhcccC-------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCC
Q 016817 66 LNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN 137 (382)
Q Consensus 66 ~i~i~nvs~~y~~~-------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~ 137 (382)
+++++||+++|+.+ ... +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAP----VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceE----EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 57889999999632 222 5999999999999999999999999999999999999 89999999987643
Q ss_pred cccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
.. ..+...+|+ .++|+||++ .+++..|+.+|+.+...... ......+++.++++.+|+.+...++++.+
T Consensus 78 ~~------~~~~~~~~~-~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 150 (265)
T TIGR02769 78 LD------RKQRRAFRR-DVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150 (265)
T ss_pred cC------HHHHHHHhh-ceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 21 112222343 799999996 46677899999865432111 11112345677889999963333489999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +..+||+++++++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tiiivsH~~~~--~~~~~d~i~~l~~ 226 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQ--QAFGTAYLFITHDLRL--VQSFCQRVAVMDK 226 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCCHHH--HHHHhcEEEEEeC
Confidence 99999999999999999999999999 999999999999999983 3348999999996665 8889999999976
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+++++++
T Consensus 227 G~i~~~g~~~~~~ 239 (265)
T TIGR02769 227 GQIVEECDVAQLL 239 (265)
T ss_pred CEEEEECCHHHHc
Confidence 3344444443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=333.74 Aligned_cols=216 Identities=14% Similarity=0.093 Sum_probs=169.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++||+++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 ml~~~~l~~~~~~~~------il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----- 69 (271)
T PRK13638 1 MLATSDLWFRYQDEP------VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK----- 69 (271)
T ss_pred CeEEEEEEEEcCCcc------cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEccccc-----
Confidence 477899999996432 6999999999999999999999999999999999999 8999999998763110
Q ss_pred hhhhhhhHhhhccceeeEeCCC-CChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRG-FNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l-~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.....+|+ .+||++|++.+ +...++.+|+.+.....+... ...+++.++++.+++.+.. ++++.+||||||||+
T Consensus 70 --~~~~~~~~-~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl 145 (271)
T PRK13638 70 --RGLLALRQ-QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRV 145 (271)
T ss_pred --CCHHHHHh-heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-cCCchhCCHHHHHHH
Confidence 01112343 79999999753 334678888865422111111 1123456788889998655 489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||+||||++. +..+||+++++++ +..+++
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tii~vtH~~~~--~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI---VAQGNHVIISSHDIDL--IYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999 99999999999999998 3358999999996665 8889999999976 344555
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
.+++.
T Consensus 221 ~~~~~ 225 (271)
T PRK13638 221 GEVFA 225 (271)
T ss_pred HHHhc
Confidence 55554
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=334.64 Aligned_cols=217 Identities=18% Similarity=0.105 Sum_probs=171.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.....
T Consensus 1 ml~~~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---- 71 (274)
T PRK13644 1 MIRLENVSYSYPDGT-P----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK---- 71 (274)
T ss_pred CEEEEEEEEEcCCCC-c----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc----
Confidence 467899999995322 1 6999999999999999999999999999999999999 89999999987643210
Q ss_pred hhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
...+++ .+||++|++. .+...|+.+|+.+.....+. .....+.+.++++.+|+.+... +++.+|||||||||
T Consensus 72 ----~~~~~~-~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv 145 (274)
T PRK13644 72 ----LQGIRK-LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-RSPKTLSGGQGQCV 145 (274)
T ss_pred ----HHHHHh-heEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CCcccCCHHHHHHH
Confidence 112333 7999999975 35558999999754322111 1112345677888999986655 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+++.|+++ ++.|.|||++|||++. +. .||+++++++ +..+++
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l---~~~g~til~~tH~~~~--~~-~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL---HEKGKTIVYITHNLEE--LH-DADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH--Hh-hCCEEEEEECCEEEEECCH
Confidence 99999999999999999 99999999999999998 3458999999997665 74 5899998876 444555
Q ss_pred cceeeEE
Q 016817 297 SGVYDIV 303 (382)
Q Consensus 297 ~~v~~~~ 303 (382)
++++..+
T Consensus 220 ~~~~~~~ 226 (274)
T PRK13644 220 ENVLSDV 226 (274)
T ss_pred HHHhcCh
Confidence 5665443
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=365.62 Aligned_cols=237 Identities=15% Similarity=0.131 Sum_probs=194.9
Q ss_pred ccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 26 AAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
..|+..+......+..+..+.+|+.++++.++... ....+.|+++||+|+|+++..+ +|+|+||++++|
T Consensus 291 ~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~----il~~i~~~i~~G 366 (574)
T PRK11160 291 FEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQP----VLKGLSLQIKAG 366 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCCc----ceecceEEECCC
Confidence 46788888888888889999999999998765311 1123469999999999754333 599999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|+++|+||||||||||+++|+|+++ ++|+|++||+++.+.+. ..+|+ .++||+|++.+|+ .|++||+.
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~---------~~~r~-~i~~v~Q~~~lf~-~ti~~Ni~ 435 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE---------AALRQ-AISVVSQRVHLFS-ATLRDNLL 435 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH---------HHHHh-heeEEcccchhhc-ccHHHHhh
Confidence 9999999999999999999999999 89999999998764432 22555 8999999999998 79999995
Q ss_pred HHHhhhhcCccccccccccCcccccccccccc----------ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCC
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEID----------DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSK 244 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~ 244 (382)
.. .+...++++.++++.+++.+++. + ....||||||||++|||||+++|++||||| +||+.
T Consensus 436 ~~-----~~~~~~~~i~~al~~~~l~~~i~-~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 436 LA-----APNASDEALIEVLQQVGLEKLLE-DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred cC-----CCccCHHHHHHHHHHcCCHHHHc-CccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 43 22345567788888888887654 3 334599999999999999999999999999 99999
Q ss_pred cchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 245 PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 245 ~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++..+.+.|.++. +++|+|+||| +++++.. +|+|+++++
T Consensus 510 t~~~i~~~l~~~~----~~~tviiitH--r~~~~~~-~d~i~~l~~ 548 (574)
T PRK11160 510 TERQILELLAEHA----QNKTVLMITH--RLTGLEQ-FDRICVMDN 548 (574)
T ss_pred HHHHHHHHHHHHc----CCCEEEEEec--ChhHHHh-CCEEEEEeC
Confidence 9999999999873 5899999999 5554764 788888876
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=320.47 Aligned_cols=199 Identities=17% Similarity=0.060 Sum_probs=163.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++ . ..|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~~-~-------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~----- 67 (211)
T cd03298 1 VRLDKIRFSYGE-Q-------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP----- 67 (211)
T ss_pred CEEEeEEEEeCC-E-------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH-----
Confidence 457899999953 2 239999999999999999999999999999999999 89999999987642211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|++|++.+|+.+|+.+|+.+....... ....++++.++++.+++.+... +++.+||||||||++|
T Consensus 68 ------~~-~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~i 139 (211)
T cd03298 68 ------AD-RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-RLPGELSGGERQRVAL 139 (211)
T ss_pred ------hH-ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHH
Confidence 12 3799999999999889999999653211000 1112345677899999986654 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 140 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 204 (211)
T cd03298 140 ARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH--AETKMTVLMVTHQPED--AKRLAQRVVFLDN 204 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHhhhCEEEEEEC
Confidence 999999999999999 999999999999999983 3458999999996655 8888999998875
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=328.79 Aligned_cols=214 Identities=11% Similarity=0.070 Sum_probs=169.6
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|+... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--- 74 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQ------ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT--- 74 (237)
T ss_pred cEEEEEeEEEeeCCce------eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH---
Confidence 4788999999996432 6999999999999999999999999999999999999 89999999987643211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-cccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~LSGGqkQRv 222 (382)
. ...+ +.++|++|++.+|+..|+.+|+....... ......+.+.++++.+ ++.+... +++.+|||||||||
T Consensus 75 ---~--~~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrl 146 (237)
T PRK11614 75 ---A--KIMR-EAVAIVPEGRRVFSRMTVEENLAMGGFFA-ERDQFQERIKWVYELFPRLHERRI-QRAGTMSGGEQQML 146 (237)
T ss_pred ---H--HHHH-hCEEEeccCcccCCCCcHHHHHHHhhhcc-ChhHHHHHHHHHHHHHHHHHHHHh-CchhhCCHHHHHHH
Confidence 1 1123 37999999999998889999997542111 1111123345566777 4665444 88999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +.++||+++++++ +..+++
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~G~i~~~~~~ 221 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL---REQGMTIFLVEQNANQ--ALKLADRGYVLENGHVVLEDTG 221 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCcHHH--HHhhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999 99999999999999998 3358999999996554 8889999999976 334444
Q ss_pred ccee
Q 016817 297 SGVY 300 (382)
Q Consensus 297 ~~v~ 300 (382)
++++
T Consensus 222 ~~~~ 225 (237)
T PRK11614 222 DALL 225 (237)
T ss_pred HHHh
Confidence 4443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=372.33 Aligned_cols=247 Identities=16% Similarity=0.148 Sum_probs=201.8
Q ss_pred cchhhhhhhccCCCCccccchhHHHHHHhhhh-h--------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCc
Q 016817 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERL-A--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPP 97 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~ 97 (382)
+-+.++..+..++..+..+..++..+++.++. . .+.-.+.|+++||+|+|+..... ++|+|+||+|++
T Consensus 939 ~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~---~Il~~l~l~i~~ 1015 (1228)
T KOG0055|consen 939 MALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDV---PVLNNLSLSIRA 1015 (1228)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCc---hhhcCCcEEecC
Confidence 34556667777888888999999999998862 1 11224579999999999865432 379999999999
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
|+.+||||||||||||.+.+|-++|+ ++|.|.+||+|+++++.. .+|+ ++|.|.|+|.||. .|++|||
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~---------~LR~-~i~lVsQEP~LF~-~TIrENI 1084 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK---------WLRK-QIGLVSQEPVLFN-GTIRENI 1084 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH---------HHHH-hcceeccCchhhc-ccHHHHH
Confidence 99999999999999999999999999 899999999998766532 3676 9999999999998 8999999
Q ss_pred HHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
.++. .. ...+++.++++.+++.+++. ..|. +||||||||+|||||+++||+|||||| +||
T Consensus 1085 ~YG~----~~-vs~~eIi~Aak~ANaH~FI~-sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALD 1158 (1228)
T KOG0055|consen 1085 AYGS----EE-VSEEEIIEAAKLANAHNFIS-SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALD 1158 (1228)
T ss_pred hccC----CC-CCHHHHHHHHHHhhhHHHHh-cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhh
Confidence 6541 12 45567788888887766554 3333 599999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
.++++.+++.|.+.. .|+|.|+|+| +++++.+ ||.|+++++ ++.|..++++
T Consensus 1159 seSErvVQeALd~a~----~gRT~IvIAH--RLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1159 SESERVVQEALDRAM----EGRTTIVIAH--RLSTIQN-ADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred hhhHHHHHHHHHHhh----cCCcEEEEec--chhhhhc-CCEEEEEECCEEEecccHHHHH
Confidence 999999999999973 6899999999 8988886 566666665 5556555554
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=367.49 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=200.3
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCc
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPP 97 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~ 97 (382)
.++..|+.+++.....+..+..+.+|+.++++.++.+. ....+.|+++|++|+|+++. + +|+|+||+|++
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~----il~~i~l~i~~ 366 (592)
T PRK10790 292 GRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDN-L----VLQNINLSVPS 366 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCC-c----eeeceeEEEcC
Confidence 36789999999999999999999999999987654311 11234699999999997432 2 59999999999
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.+... ..+|+ +|+|++|++.+|+ .|+++|+
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~---------~~l~~-~i~~v~Q~~~lF~-~Ti~~NI 435 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH---------SVLRQ-GVAMVQQDPVVLA-DTFLANV 435 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH---------HHHHh-heEEEccCCcccc-chHHHHH
Confidence 99999999999999999999999999 89999999997754332 22555 9999999999998 6999999
Q ss_pred HHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
... . ..+++++.++++.+|+.+.+. +. ...||||||||++|||||+.+|+|||||| +||
T Consensus 436 ~~~-----~-~~~d~~i~~a~~~~gl~~~i~-~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD 508 (592)
T PRK10790 436 TLG-----R-DISEEQVWQALETVQLAELAR-SLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508 (592)
T ss_pred HhC-----C-CCCHHHHHHHHHHcCcHHHHH-hccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 643 2 234566778888888775443 33 24599999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+.+.+.+.+.|+++. .++|+|+|||++ +... .+|+|++|++ +..|+.++++
T Consensus 509 ~~t~~~i~~~l~~~~----~~~tvIivtHr~--~~l~-~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 509 SGTEQAIQQALAAVR----EHTTLVVIAHRL--STIV-EADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHHHHHh----CCCEEEEEecch--HHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999873 469999999955 3355 5888888876 4444444443
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=334.84 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=171.2
Q ss_pred hhHHHHHhhhcccCC---eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~---~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+|+++|++++|+++. +. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~----~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~- 76 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKK----GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETG- 76 (287)
T ss_pred EEEEEEEEEEcCCCCCcccc----ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc-
Confidence 367899999996421 12 6999999999999999999999999999999999999 89999999987642110
Q ss_pred eeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc-CccccccccccCcccccc-ccccccccCCCccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMK-NDAEIDDLKSSPKY 217 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSGG 217 (382)
.......+. .+||+||++ .+| .+|+.+|+.+....... .....+++.++++.+|+. +.. ++++.+||||
T Consensus 77 ----~~~~~~~~~-~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~LSgG 149 (287)
T PRK13641 77 ----NKNLKKLRK-KVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-SKSPFELSGG 149 (287)
T ss_pred ----cchHHHHHh-ceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-hCCcccCCHH
Confidence 001112333 799999997 355 47999999754321111 111224567788999996 444 4999999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---c
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---L 291 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~ 291 (382)
|||||+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||++|||++. +.++||+++++++ +
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l---~~~g~tvlivsH~~~~--~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY---QKAGHTVILVTHNMDD--VAEYADDVLVLEHGKLI 224 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999 99999999999999998 3458999999996665 8899999999986 3
Q ss_pred ccccccceee
Q 016817 292 GVSEISGVYD 301 (382)
Q Consensus 292 ~~~~~~~v~~ 301 (382)
..+++++++.
T Consensus 225 ~~g~~~~~~~ 234 (287)
T PRK13641 225 KHASPKEIFS 234 (287)
T ss_pred EeCCHHHHhc
Confidence 4455555543
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=373.08 Aligned_cols=248 Identities=14% Similarity=0.097 Sum_probs=196.0
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----c--CcCchhHHHHHhhhcccCC-eeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----I--APDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~i~i~nvs~~y~~~~-~~v~~~vL~~isl~ 94 (382)
.++..|+..++.....+.++..+.+|+.++++.++... . ...+.|+++||+|+|++.. .+ +|+|+||+
T Consensus 428 ~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~----vL~~isl~ 503 (711)
T TIGR00958 428 EQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVP----VLKGLTFT 503 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCc----cccCceEE
Confidence 35778999999999999999999999999987765311 0 1234699999999997532 22 69999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++.+... ..+|+ +|+||+|++.+|+ .|++
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~---------~~lr~-~i~~v~Q~~~lF~-gTIr 572 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH---------HYLHR-QVALVGQEPVLFS-GSVR 572 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH---------HHHHh-hceEEecCccccc-cCHH
Confidence 99999999999999999999999999999 89999999998754432 22554 8999999999998 8999
Q ss_pred hhHHHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
||+.+. .....++++.++++.+++.+++. +. ..+||||||||++|||||+++|+||||||
T Consensus 573 eNI~~g-----~~~~~~e~i~~al~~a~l~~~i~-~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTS 646 (711)
T TIGR00958 573 ENIAYG-----LTDTPDEEIMAAAKAANAHDFIM-EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATS 646 (711)
T ss_pred HHHhcC-----CCCCCHHHHHHHHHHcCCHHHHH-hCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccc
Confidence 999543 22234556777788777765443 22 24599999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+||++++..+.+ ... ..++|+|+||| +++.+. .+|+|+++++ +..|+.++++
T Consensus 647 aLD~~te~~i~~-~~~-----~~~~TvIiItH--rl~~i~-~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 647 ALDAECEQLLQE-SRS-----RASRTVLLIAH--RLSTVE-RADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred ccCHHHHHHHHH-hhc-----cCCCeEEEEec--cHHHHH-hCCEEEEEECCEEEEeeCHHHHH
Confidence 999999999988 222 25899999999 454465 5788888876 4445444443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=335.15 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=172.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++||+++|+....+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 4 ~~l~~~~l~~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~---- 75 (279)
T PRK13635 4 EIIRVEHISFRYPDAATY----ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEET---- 75 (279)
T ss_pred ceEEEEEEEEEeCCCCcc----ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCc----
Confidence 478999999999643222 6999999999999999999999999999999999999 8999999999764321
Q ss_pred ehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
. ..+++ .+||+||++. +++..|+.+|+.+....... .....+++.++++.+||.+... +.|.+||||||||
T Consensus 76 --~---~~~~~-~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qr 148 (279)
T PRK13635 76 --V---WDVRR-QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-REPHRLSGGQKQR 148 (279)
T ss_pred --H---HHHhh-heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHH
Confidence 1 11333 7999999973 56668999999764322111 1111245677889999987655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||++|||++. +. .||+++++++ +..++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~--~~~~~tilivsH~~~~--~~-~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK--EQKGITVLSITHDLDE--AA-QADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HcCCCEEEEEecCHHH--HH-cCCEEEEEECCEEEEECC
Confidence 999999999999999999 999999999999999983 3348999999997665 76 4889888876 34444
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+++++
T Consensus 224 ~~~~~ 228 (279)
T PRK13635 224 PEEIF 228 (279)
T ss_pred HHHHh
Confidence 44444
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=327.80 Aligned_cols=212 Identities=13% Similarity=0.114 Sum_probs=168.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcc--cce-
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSS--HTI- 142 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~--~~~- 142 (382)
|+++||+++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGIL--T----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCCe--e----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 4678999999643 2 5999999999999999999999999999999999998 8999999998764321 000
Q ss_pred -eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-h-cCccccccccccCccccccccccccccCCCcccee
Q 016817 143 -TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-S-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 143 -~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.........+++ .++|+||++.+|+..|+.+|+.+..... . ......+.+.++++.+|+.+... +.+.+|||||+
T Consensus 75 ~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRN-KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-HMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhh-CeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-cChhhcCHHHH
Confidence 000011122344 8999999999998899999997542111 1 01111234667888999986654 89999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|+||||++. +..++|+++++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tiiivsH~~~~--~~~~~d~i~~l~~ 222 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA--SEHDLTMLLVTHEMGF--AREFADRVCFFDK 222 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999999 999999999999999983 3348999999996655 8888999999987
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=334.35 Aligned_cols=219 Identities=15% Similarity=0.084 Sum_probs=173.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++|++++|+.+. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 4 ~~l~~~~l~~~~~~~~-~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~---- 74 (283)
T PRK13636 4 YILKVEELNYNYSDGT-H----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR---- 74 (283)
T ss_pred ceEEEEeEEEEeCCCC-e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCc----
Confidence 4789999999996322 2 6999999999999999999999999999999999999 8999999998763110
Q ss_pred ehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.....+|+ .+||+||++. .+...|+.+|+.+........ ....+++.++++.+||.+.. ++++.+||||||||
T Consensus 75 ---~~~~~~~~-~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qr 149 (283)
T PRK13636 75 ---KGLMKLRE-SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKR 149 (283)
T ss_pred ---chHHHHHh-hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-hCCcccCCHHHHHH
Confidence 11122444 8999999973 223479999997643222111 11224567788999998665 49999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
++|||||+.+|++||||| +||+.++..+.++|+++. ++.|+|||++|||++. +..+||++++|++ +..++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tillvsH~~~~--~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ--KELGLTIIIATHDIDI--VPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999 999999999999999983 3348999999996655 8889999999976 44555
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
+++++.
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 555554
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=327.48 Aligned_cols=216 Identities=14% Similarity=0.104 Sum_probs=169.9
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~ 136 (382)
..++++++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|+++.
T Consensus 4 ~~~~l~~~~l~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 4 NEAIIETENLNLFYTDFK------ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CCceEEEeeeEEEeCCce------eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 456899999999996432 5999999999999999999999999999999999998 4 899999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCcccccc----ccccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMK----NDAEIDD 210 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~----~~~~~~~ 210 (382)
... .....+|+ .++|++|++.+|+ .|+.+|+.+....... . ....+.+.++++.+++. +.. +++
T Consensus 78 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~ 147 (254)
T PRK14273 78 SNN-------FDILELRR-KIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKL-NTN 147 (254)
T ss_pred ccc-------ccHHHHhh-ceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHH-hCC
Confidence 210 01112344 8999999998886 8999999764321111 0 11123456677777763 233 488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ + ++.|||++|||++. +.++||++++
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tvii~sH~~~~--~~~~~d~i~~ 221 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL---K-ESYTIIIVTHNMQQ--AGRISDRTAF 221 (254)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 99999999999999998 3 36899999996655 8889999999
Q ss_pred hhh---ccccccccee
Q 016817 288 CEY---LGVSEISGVY 300 (382)
Q Consensus 288 l~~---~~~~~~~~v~ 300 (382)
|++ +..+++++++
T Consensus 222 l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 222 FLNGCIEEESSTDELF 237 (254)
T ss_pred EECCEEEEeCCHHHHH
Confidence 976 3344444444
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=326.29 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=167.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 2 ~i~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---- 71 (242)
T TIGR03411 2 ILYLEGLSVSFDGF--K----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE---- 71 (242)
T ss_pred eEEEEeeEEEcCCe--E----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH----
Confidence 67899999999642 2 5999999999999999999999999999999999998 89999999986543211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh---------cCccccccccccCccccccccccccccCCCc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS---------EGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---------~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
.+ .+++.++|+||++.+|+.+|+.+|+.+...... ......+++.++++.+|+.+... +++.+||
T Consensus 72 --~~---~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS 145 (242)
T TIGR03411 72 --HQ---IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-RLAGLLS 145 (242)
T ss_pred --HH---HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-CChhhCC
Confidence 11 112379999999999998999999976431100 00112345677888999986654 8999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||+|||||+.+|++||||| +||+.++..+.+.|+++. + ++|||++|||++. +..+||+++++++
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~~sH~~~~--~~~~~d~i~~l~~ 217 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA---G-KHSVVVVEHDMEF--VRSIADKVTVLHQ 217 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh---c-CCEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999999999 999999999999999983 2 6899999996555 8889999999876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=327.80 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=165.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~------~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----- 71 (241)
T PRK14250 3 EIEFKEVSYSSFGKE------ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID----- 71 (241)
T ss_pred eEEEEeEEEEeCCee------eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC-----
Confidence 467899999996432 5999999999999999999999999999999999998 8999999998754211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+|+ .++|+||++.+|+ .|+.+|+.+... . .. ...+++.++++.+++.+...++++.+|||||||||+|
T Consensus 72 ----~~~~~~-~i~~~~q~~~~~~-~tv~e~l~~~~~-~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 142 (241)
T PRK14250 72 ----VIDLRR-KIGMVFQQPHLFE-GTVKDNIEYGPM-L-KG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSI 142 (241)
T ss_pred ----hHHhhh-cEEEEecCchhch-hhHHHHHhcchh-h-cC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHH
Confidence 112343 7999999998887 699999864321 1 11 1223566778889996333348999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tii~~sH~~~~--~~~~~d~i~~l~~ 207 (241)
T PRK14250 143 ARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK--NKMNLTVIWITHNMEQ--AKRIGDYTAFLNK 207 (241)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhCCCEEEEEeccHHH--HHHhCCEEEEEeC
Confidence 999999999999999 999999999999999983 3358999999996655 8889999999986
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=322.76 Aligned_cols=202 Identities=12% Similarity=0.063 Sum_probs=163.6
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++||++.|+.. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----- 69 (230)
T TIGR03410 1 LEVSNLNVYYGQS--H----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP----- 69 (230)
T ss_pred CEEEeEEEEeCCe--E----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH-----
Confidence 4578999999643 2 5999999999999999999999999999999999999 89999999987643211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccc-ccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-MKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.. ..+ +.++|+||++.+|+.+|+.+|+.+..... .....+...++++.++ +.+.. ++++.+||||||||++|
T Consensus 70 -~~--~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrv~l 142 (230)
T TIGR03410 70 -HE--RAR-AGIAYVPQGREIFPRLTVEENLLTGLAAL--PRRSRKIPDEIYELFPVLKEML-GRRGGDLSGGQQQQLAI 142 (230)
T ss_pred -HH--HHH-hCeEEeccCCcccCCCcHHHHHHHHHHhc--CcchHHHHHHHHHHHHhHHHHh-hCChhhCCHHHHHHHHH
Confidence 11 122 37999999999999889999997543211 1112233456677776 45444 48999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|.++. ++.|+|||++|||++. +..+||+++++++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~v~~l~~ 207 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLR--AEGGMAILLVEQYLDF--ARELADRYYVMER 207 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HcCCcEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 999999999999999973 3348999999996555 8889999999876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=331.60 Aligned_cols=206 Identities=15% Similarity=0.038 Sum_probs=169.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+.+++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 9 ~~~l~i~~l~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--- 79 (265)
T PRK10575 9 DTTFALRNVSFRVPGR--T----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS--- 79 (265)
T ss_pred CceEEEeeEEEEECCE--E----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC---
Confidence 3579999999999642 2 5999999999999999999999999999999999999 8999999998653221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-----CccccccccccCccccccccccccccCCCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-----GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-----~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
...+++ .++|+||++.+++.+|+.+|+.+....... .....+++.++++.+++.+... +++.+||||
T Consensus 80 ------~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG 151 (265)
T PRK10575 80 ------SKAFAR-KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-RLVDSLSGG 151 (265)
T ss_pred ------HHHHhh-heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCCHH
Confidence 112343 799999998888888999999653211100 0112235667888999986554 899999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||||+.+|++||||| +||+.++..+.++|.++. ++.|.|||++|||++. +.++||+++++++
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~~~~~tiii~sH~~~~--i~~~~d~i~~l~~ 223 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS--QERGLTVIAVLHDINM--AARYCDYLVALRG 223 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999999 999999999999999983 3348999999996555 8889999999876
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=315.40 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=160.8
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
++|+++.|++. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...... .
T Consensus 1 i~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-----~ 69 (206)
T TIGR03608 1 LKNISKKFGDK--I----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK-----K 69 (206)
T ss_pred CcceEEEECCE--E----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh-----h
Confidence 46899999642 2 5999999999999999999999999999999999998 899999999875322110 0
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
.....+ +.++|++|++.+|+..|+.+|+.+....... .....+++.++++.+++.+..+ +++.+||||||||++|||
T Consensus 70 ~~~~~~-~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 70 ASKFRR-EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-QKIYELSGGEQQRVALAR 147 (206)
T ss_pred HHHHHH-hCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-CChhhCCHHHHHHHHHHH
Confidence 111123 3899999999999889999999764321111 1112345677889999976654 899999999999999999
Q ss_pred eehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 227 VVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 227 aL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
||+.+|++||||| +||+.++..+.+.|+++ .+.|.|+|++|||++. + ..||++++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sh~~~~--~-~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLEL---NDEGKTIIIVTHDPEV--A-KQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--H-hhcCEEEeC
Confidence 9999999999999 99999999999999998 3358999999997654 5 467877654
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=329.96 Aligned_cols=204 Identities=16% Similarity=0.064 Sum_probs=166.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 2 ~l~~~~l~~~~~~~~------il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~---- 71 (258)
T PRK13548 2 MLEARNLSVRLGGRT------LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP---- 71 (258)
T ss_pred eEEEEeEEEEeCCee------eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH----
Confidence 578899999996432 5999999999999999999999999999999999998 89999999986542211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..++ +.++|++|++.+++.+|+.+|+.+....... .....+.+.++++.+++.+... +++.+|||||||||+
T Consensus 72 -----~~~~-~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGe~qrv~ 144 (258)
T PRK13548 72 -----AELA-RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-RDYPQLSGGEQQRVQ 144 (258)
T ss_pred -----HHhh-hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHH
Confidence 1123 3799999998887778999999754211110 0111234667888999986554 999999999999999
Q ss_pred eeeeeh------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVS------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+ .+|++||||| +||+.++..+.+.|+++. +++|.|||++|||++. +..+||++++|++
T Consensus 145 la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 216 (258)
T PRK13548 145 LARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA--HERGLAVIVVLHDLNL--AARYADRIVLLHQ 216 (258)
T ss_pred HHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEECCHHH--HHHhcCEEEEEEC
Confidence 999999 5999999999 999999999999999982 2468999999996665 8889999999976
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=324.78 Aligned_cols=209 Identities=18% Similarity=0.090 Sum_probs=167.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|+++.|+... +|+|+||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..... .
T Consensus 2 ~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~ 72 (242)
T PRK11124 2 SIQLNGINCFYGAHQ------ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT---P 72 (242)
T ss_pred EEEEEeeEEEECCee------eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccc---c
Confidence 467899999996432 5999999999999999999999999999999999999 89999999986521100 0
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.......+|+ .++|++|++.+|+.+|+.+|+....... ... ....+.+.++++.+|+.+.+. +.+.+|||||||||
T Consensus 73 ~~~~~~~~~~-~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv 150 (242)
T PRK11124 73 SDKAIRELRR-NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-RFPLHLSGGQQQRV 150 (242)
T ss_pred chhhHHHHHh-heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHH
Confidence 0011122444 7999999999998899999996432111 111 111234667788899986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ +++|+|+|++|||++. +..++|+++++++
T Consensus 151 ~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sh~~~~--~~~~~d~i~~l~~ 216 (242)
T PRK11124 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL---AETGITQVIVTHEVEV--ARKTASRVVYMEN 216 (242)
T ss_pred HHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999 99999999999999998 3458999999996655 8888999998876
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=331.21 Aligned_cols=207 Identities=13% Similarity=0.032 Sum_probs=169.9
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
...+|+++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~~~~l~i~~l~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-- 75 (265)
T PRK10253 4 SVARLRGEQLTLGYGKY--T----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA-- 75 (265)
T ss_pred cccEEEEEEEEEEECCE--E----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCC--
Confidence 45688999999999643 2 5999999999999999999999999999999999998 8999999998653211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-----cCccccccccccCccccccccccccccCCCcc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-----EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
....++ .++|+||++.+|+..|+.+|+........ ......+.+.++++.+++.+... +++.+|||
T Consensus 76 -------~~~~~~-~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~ 146 (265)
T PRK10253 76 -------SKEVAR-RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-QSVDTLSG 146 (265)
T ss_pred -------HHHHhh-heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCCh
Confidence 111233 79999999988888999999965321110 00111235667888999986554 99999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||++|||||+.+|++||||| +||+.++..+.+.|.++. ++.|.|||++|||++. +.++||+++++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~--~~~~~tiii~tH~~~~--~~~~~d~i~~l~~ 219 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN--REKGYTLAAVLHDLNQ--ACRYASHLIALRE 219 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999 999999999999999983 3358999999996665 8899999999976
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=323.45 Aligned_cols=204 Identities=13% Similarity=0.011 Sum_probs=162.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|++ + ++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~--- 71 (243)
T TIGR01978 1 LKIKDLHVSVEDK--E----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP--- 71 (243)
T ss_pred CeEeeEEEEECCE--E----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH---
Confidence 4678999999642 2 599999999999999999999999999999999995 5 79999999987643211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--C---cc---ccccccccCccccccccccccccC-CC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--G---VH---HNQRCLRSDDCALMKNDAEIDDLK-SS 214 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~---~~---~~~~~~~~l~~~~L~~~~~~~~~~-~L 214 (382)
.. .++..++|++|++.+|+.+|+.+|+......... . .. ..+++.++++.+++.+...++.+. +|
T Consensus 72 ---~~---~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 145 (243)
T TIGR01978 72 ---DE---RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGF 145 (243)
T ss_pred ---HH---hhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCc
Confidence 11 1112589999999999999999999764321110 0 01 123456778889997433347776 59
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||+||||++. +..+ ||++++|++
T Consensus 146 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tvi~vsH~~~~--~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL---REPDRSFLIITHYQRL--LNYIKPDYVHVLLD 220 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH---HHCCcEEEEEEecHHH--HHhhcCCeEEEEeC
Confidence 9999999999999999999999999 99999999999999998 3468999999996655 8887 799998876
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=314.73 Aligned_cols=200 Identities=17% Similarity=0.127 Sum_probs=170.6
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
+++|+.+.-.++||.|+||||||||+|+|+|+.+ ++|.|.+||.-+.+.......+.. + ++|||||||..|||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~-----~-RriGYVFQDARLFp 89 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE-----K-RRIGYVFQDARLFP 89 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChh-----h-heeeeEeecccccc
Confidence 6789998767999999999999999999999999 899999999977665443333322 2 48999999999999
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKP 245 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~ 245 (382)
++||+.|+.+... ........++.+.+|+.+.+. ++|.+|||||||||||+|||+..|++||||| +||..-
T Consensus 90 H~tVrgNL~YG~~-----~~~~~~fd~iv~lLGI~hLL~-R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 90 HYTVRGNLRYGMW-----KSMRAQFDQLVALLGIEHLLD-RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ceEEecchhhhhc-----ccchHhHHHHHHHhCcHHHHh-hCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 9999999976542 123445677888999997765 9999999999999999999999999999999 999999
Q ss_pred chhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceeeEEEe
Q 016817 246 LDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYDIVCL 305 (382)
Q Consensus 246 ~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~~~~l 305 (382)
+.+++-.|.++. .+.+..|++||| .++++.+.+|+|++|++ ...+..+++|..+.+
T Consensus 164 K~EilpylERL~--~e~~IPIlYVSH--S~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~ 222 (352)
T COG4148 164 KREILPYLERLR--DEINIPILYVSH--SLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDF 222 (352)
T ss_pred hhHHHHHHHHHH--HhcCCCEEEEec--CHHHHHhhhheEEEecCCeEEecCcHHHHhcCccc
Confidence 999999999994 667899999999 77779999999999998 556677777765543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=325.37 Aligned_cols=203 Identities=17% Similarity=0.095 Sum_probs=165.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQV--E----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECCe--e----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 57899999999643 2 5999999999999999999999999999999999986 3999999998764221
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C--ccccccccccCcccccccc---ccccccCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G--VHHNQRCLRSDDCALMKND---AEIDDLKS 213 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~--~~~~~~~~~~l~~~~L~~~---~~~~~~~~ 213 (382)
...+++ .+||+||++.+++..|+.+|+.+....... . ....+.+.++++.+++.+. ..++++.+
T Consensus 77 ---------~~~~~~-~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 146 (250)
T PRK14247 77 ---------VIELRR-RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGK 146 (250)
T ss_pred ---------HHHHhc-cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCccc
Confidence 112343 899999999888889999999764321110 0 1112346677888888531 23488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . .|.|+|++|||++. +..+||++++|++
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~sH~~~~--~~~~~d~i~~l~~ 220 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL---K-KDMTIVLVTHFPQQ--AARISDYVAFLYK 220 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999999999999 99999999999999997 3 37999999996655 8889999999976
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=316.22 Aligned_cols=198 Identities=13% Similarity=0.046 Sum_probs=164.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~----- 69 (204)
T PRK13538 1 MLEARNLACERDER--I----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR----- 69 (204)
T ss_pred CeEEEEEEEEECCE--E----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-----
Confidence 46788999999642 2 5999999999999999999999999999999999999 8999999998654211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+++ .++|++|++.+++.+|+.+|+....... +....+++.++++.+|+.+.. ++++.+||||||||++|
T Consensus 70 -----~~~~~-~~~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~l 140 (204)
T PRK13538 70 -----DEYHQ-DLLYLGHQPGIKTELTALENLRFYQRLH--GPGDDEALWEALAQVGLAGFE-DVPVRQLSAGQQRRVAL 140 (204)
T ss_pred -----HHhhh-heEEeCCccccCcCCcHHHHHHHHHHhc--CccHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHHHH
Confidence 11333 7999999998888899999997643211 112334667789999998655 48999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
||||+.+|++||||| +||+.++..+.+.|+++ +++|.|||++|||+.. +..+..|++++
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--i~~~~~~~~~~ 202 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH---AEQGGMVILTTHQDLP--VASDKVRKLRL 202 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HHCCCEEEEEecChhh--hccCCceEEec
Confidence 999999999999999 99999999999999997 3458899999997666 77677777665
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=344.61 Aligned_cols=251 Identities=14% Similarity=0.122 Sum_probs=203.3
Q ss_pred eccccchhhhh-hhccCCCCccccchhHHHHHHhhhhhhc------CcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 23 WRSAAKFDECV-KLKLDLPNVSTLTPRLRVLREMERLALI------APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
+...++|.-++ ..+..+++...+..|+.++.+.++.... ..+..++++||||+|++...+ +|+|+||++
T Consensus 286 f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~----~L~~~~l~l 361 (573)
T COG4987 286 FAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTK----ALKNFNLTL 361 (573)
T ss_pred HHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccc----hhhccceee
Confidence 44456666666 6667888889999999999888765211 112278999999999876644 699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||.+||+|+||||||||+++|+|.++ ++|+|.++|.++..++.. . +|. .++++.|.+.+|. .|+++
T Consensus 362 ~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~------~---~~e-~i~vl~Qr~hlF~-~Tlr~ 430 (573)
T COG4987 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQ------A---LRE-TISVLTQRVHLFS-GTLRD 430 (573)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChh------h---HHH-HHhhhccchHHHH-HHHHH
Confidence 9999999999999999999999999999 899999999987654431 1 444 8999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccccc----------ccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEID----------DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+.. .++...++.+.++++++||++.+.+. .-..||||||||++|||+|+++.+++|||| +|
T Consensus 431 NL~l-----A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegL 505 (573)
T COG4987 431 NLRL-----ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505 (573)
T ss_pred HHhh-----cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccC
Confidence 9953 34556778899999999998766532 123499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+.+..+++++|.+-+ +|+|+|||||++.- +. .+|+|+++++ +..+...+.+
T Consensus 506 D~~TE~~vL~ll~~~~----~~kTll~vTHrL~~--le-~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 506 DPITERQVLALLFEHA----EGKTLLMVTHRLRG--LE-RMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred ChhhHHHHHHHHHHHh----cCCeEEEEeccccc--Hh-hcCEEEEEECCeeeecCCHHhhh
Confidence 9999999999998853 69999999994444 65 5677777776 5666655554
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=318.51 Aligned_cols=205 Identities=14% Similarity=0.114 Sum_probs=166.3
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.+++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 4 ~~~~i~~~~l~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~- 76 (225)
T PRK10247 4 NSPLLQLQNVGYLAGDAK------ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP- 76 (225)
T ss_pred CCceEEEeccEEeeCCce------eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH-
Confidence 345799999999996432 5999999999999999999999999999999999998 89999999986543211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+++ .++|+||++.+|+ .|+.+|+.+..... ......+++.++++.+++.+...++++.+|||||+||
T Consensus 77 --------~~~~~-~i~~~~q~~~l~~-~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 145 (225)
T PRK10247 77 --------EIYRQ-QVSYCAQTPTLFG-DTVYDNLIFPWQIR-NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQR 145 (225)
T ss_pred --------HHHHh-ccEEEeccccccc-ccHHHHHHhHHhhc-CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHH
Confidence 11333 8999999998887 59999997542111 1111223456788899996433348999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +. .||+++++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvii~sh~~~~--~~-~~d~i~~l~~ 212 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV--REQNIAVLWVTHDKDE--IN-HADKVITLQP 212 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEECChHH--HH-hCCEEEEEec
Confidence 999999999999999999 999999999999999983 3458999999997665 75 5899998863
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=328.08 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=166.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 2 ~l~~~~l~~~~~~~--~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----- 70 (255)
T PRK11231 2 TLRTENLTVGYGTK--R----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLS----- 70 (255)
T ss_pred EEEEEeEEEEECCE--E----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCC-----
Confidence 47789999999642 2 5999999999999999999999999999999999998 8999999998653211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh----hhc-CccccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW----MSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~----~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
. ..+++ .++|+||++.+++..|+.+|+.+.... +.. .....+++.++++.+++.+... +++.+|||||+
T Consensus 71 -~---~~~~~-~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~ 144 (255)
T PRK11231 71 -S---RQLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-RRLTDLSGGQR 144 (255)
T ss_pred -H---HHHhh-heEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-CCcccCCHHHH
Confidence 1 11333 799999999888888999999753211 110 1112235667888899986554 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +.++||+++++++
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l---~~~~~tiii~tH~~~~--~~~~~d~i~~l~~ 213 (255)
T PRK11231 145 QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL---NTQGKTVVTVLHDLNQ--ASRYCDHLVVLAN 213 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEECCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999999 99999999999999997 3358999999996555 8899999999976
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=331.08 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=171.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----- 72 (277)
T PRK13652 3 LIETRDLCYSYSGSK-E----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN----- 72 (277)
T ss_pred eEEEEEEEEEeCCCC-c----eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-----
Confidence 578899999996332 1 5999999999999999999999999999999999999 8999999998654211
Q ss_pred hhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+++ .+||+||++. ++ ..|+.+|+.+....... .....+++.++++.+++.+... +.+.+||||||||
T Consensus 73 ----~~~~~~-~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qr 145 (277)
T PRK13652 73 ----IREVRK-FVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-RVPHHLSGGEKKR 145 (277)
T ss_pred ----HHHHHh-heEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHH
Confidence 112333 7999999973 44 47999999654321111 1111234677889999986655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
++|||||+.+|++||||| +||+.++..+.++|+++. ++.|.|||++|||++. +.++||+++++++ +..++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tvli~tH~~~~--~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLP--ETYGMTVIFSTHQLDL--VPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEECCeEEEECC
Confidence 999999999999999999 999999999999999983 3348999999996655 8889999999976 44555
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
+++++.
T Consensus 222 ~~~~~~ 227 (277)
T PRK13652 222 VEEIFL 227 (277)
T ss_pred HHHHhc
Confidence 555553
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=339.72 Aligned_cols=246 Identities=17% Similarity=0.165 Sum_probs=199.3
Q ss_pred cchhhhhhhccCCCCccccchhHHHHHHhhhh--------hhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERL--------ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
.|+.-.|.+--.+++...-+++..++++.++. +...+.+.|+++||+|.|..++ ++|+||||++.+|
T Consensus 490 ~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k-----~vl~disF~v~pG 564 (790)
T KOG0056|consen 490 MPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGK-----PVLSDISFTVQPG 564 (790)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCC-----ceeecceEEecCC
Confidence 45555555556667777788888888888875 2223457899999999998765 3699999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
+++|||||||+||||++|++.++++ .+|.|.|||+|++... ...+|+ .||.||||..||+ .|+..||.
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt---------~~SLRs-~IGVVPQDtvLFN-dTI~yNIr 633 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT---------QSSLRS-SIGVVPQDTVLFN-DTILYNIR 633 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH---------HHHHHH-hcCcccCcceeec-ceeeehee
Confidence 9999999999999999999999999 9999999999875322 234776 9999999999998 79999995
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccCC-----------CccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------SPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
+. +..+.++++.++.+..++.+.+. ..|.. |||||||||||||+++++|.|++||| +||.
T Consensus 634 ya-----k~~AsneevyaAAkAA~IHdrIl-~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 634 YA-----KPSASNEEVYAAAKAAQIHDRIL-QFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred ec-----CCCCChHHHHHHHHHhhHHHHHh-cCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 43 45556677888888777776554 44443 99999999999999999999999999 9999
Q ss_pred CcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--ccccccccee
Q 016817 244 KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--LGVSEISGVY 300 (382)
Q Consensus 244 ~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--~~~~~~~~v~ 300 (382)
.+++.|+..|.+++ .++|.|+|.| +++++.++|.++++-++ ++.|..++.+
T Consensus 708 ~tER~IQaaL~rlc----a~RTtIVvAH--RLSTivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 708 NTERAIQAALARLC----ANRTTIVVAH--RLSTIVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred ccHHHHHHHHHHHh----cCCceEEEee--eehheecccEEEEEeCCeEeecCcHHHHH
Confidence 99999999999996 6889999999 89888875555554444 5556555544
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=332.86 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=172.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc---ceeeeEeecCCCcc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGNSS 139 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~---G~I~i~G~~i~~~~ 139 (382)
+.+++++|++++|++.... +|+++||+|++||+++|+||||||||||+++|+|+++ ++ |+|+++|.++....
T Consensus 3 ~~~l~i~~l~~~~~~~~~~----~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKP----ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred CceEEEEEEEEEcCCCCcc----ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCC
Confidence 4578999999999643222 5999999999999999999999999999999999998 65 99999998764211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
...+++ .+||+||++. +++..|+.+|+.+........ ....+++.++++.+||.+... ++|.+||||
T Consensus 79 ---------~~~~~~-~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~G 147 (282)
T PRK13640 79 ---------VWDIRE-KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-SEPANLSGG 147 (282)
T ss_pred ---------HHHHHh-heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHH
Confidence 111343 8999999974 566689999997532111111 111245677899999987655 999999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---c
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---L 291 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~ 291 (382)
|+|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +. .||++++|++ +
T Consensus 148 ~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tvli~tH~~~~--~~-~~d~i~~l~~G~i~ 222 (282)
T PRK13640 148 QKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK--KKNNLTVISITHDIDE--AN-MADQVLVLDDGKLL 222 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HH-hCCEEEEEECCEEE
Confidence 9999999999999999999999 999999999999999983 3358999999997665 74 6899998876 4
Q ss_pred ccccccceee
Q 016817 292 GVSEISGVYD 301 (382)
Q Consensus 292 ~~~~~~~v~~ 301 (382)
..+++++++.
T Consensus 223 ~~g~~~~~~~ 232 (282)
T PRK13640 223 AQGSPVEIFS 232 (282)
T ss_pred EeCCHHHHhc
Confidence 4555555654
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=308.29 Aligned_cols=227 Identities=17% Similarity=0.103 Sum_probs=189.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+.+|+|++..++. +|+++||++.+||++||+||||||||||||.|+|... ++|++.++|.++..++
T Consensus 1 mi~a~nls~~~~Gr~------ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~----- 69 (259)
T COG4559 1 MIRAENLSYSLAGRR------LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP----- 69 (259)
T ss_pred CeeeeeeEEEeecce------eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCC-----
Confidence 578899998886554 6999999999999999999999999999999999998 8999999999765433
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-c--cccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-V--HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~--~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+.+ ++-+.++|+..+-..+||.|.+.+.......+ . .+.+.+.++|..+++..+.. +...+||||||||
T Consensus 70 -~~~lA----~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-R~y~~LSGGEqQR 143 (259)
T COG4559 70 -PEELA----RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-RDYRTLSGGEQQR 143 (259)
T ss_pred -HHHHH----HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-cchhhcCchHHHH
Confidence 23333 35678999987744489999998776444322 2 23344778899999987655 8899999999999
Q ss_pred cceeeeehh------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--
Q 016817 222 VDFAMVVSN------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY-- 290 (382)
Q Consensus 222 vaIAraL~~------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~-- 290 (382)
|.+||+|++ ++++|+||| +||+.++..++++.++++ ..|..|+.|-||+++ +..|||+|++|++
T Consensus 144 VqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la---~~g~~V~~VLHDLNL--AA~YaDrivll~~Gr 218 (259)
T COG4559 144 VQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA---REGGAVLAVLHDLNL--AAQYADRIVLLHQGR 218 (259)
T ss_pred HHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHH---hcCCcEEEEEccchH--HHHhhheeeeeeCCe
Confidence 999999987 345889999 999999999999999994 468999999999999 9999999999998
Q ss_pred -cccccccceeeEEEecc-ccCCCCc
Q 016817 291 -LGVSEISGVYDIVCLTE-YGFPAEE 314 (382)
Q Consensus 291 -~~~~~~~~v~~~~~l~~-~~~~~~~ 314 (382)
+..+.|.++++.|.++. ||.+..+
T Consensus 219 v~a~g~p~~vlt~Etl~~vyg~~~~V 244 (259)
T COG4559 219 VIASGSPQDVLTDETLERVYGADIRV 244 (259)
T ss_pred EeecCCHHHhcCHHHHHHHhCCceee
Confidence 78889999999988877 8876544
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=330.01 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=171.5
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+..+++++|++++|+++..+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~-- 77 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENN----ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN-- 77 (271)
T ss_pred cceEEEEEeEEEEcCCCCcc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC--
Confidence 34589999999999643222 6999999999999999999999999999999999999 8999999998764211
Q ss_pred eeehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCcccee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
...+|+ .+||++|++. .|+.+|+.+|+.+........ ....+.+.++++.+++.+... +++.+||||||
T Consensus 78 -------~~~~~~-~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~ 148 (271)
T PRK13632 78 -------LKEIRK-KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-KEPQNLSGGQK 148 (271)
T ss_pred -------HHHHhc-ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CCcccCCHHHH
Confidence 112444 7999999974 566689999997543211111 111234667888999986655 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
||++|||||+.+|++||||| +||+.++..++++|+++. ++.+.|||++|||++. +. .||++++|++ ...
T Consensus 149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~-~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLR--KTRKKTLISITHDMDE--AI-LADKVIVFSEGKLIAQ 223 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEEechhH--Hh-hCCEEEEEECCEEEEe
Confidence 99999999999999999999 999999999999999983 3335899999997665 65 6899988876 333
Q ss_pred cccccee
Q 016817 294 SEISGVY 300 (382)
Q Consensus 294 ~~~~~v~ 300 (382)
+++++++
T Consensus 224 g~~~~~~ 230 (271)
T PRK13632 224 GKPKEIL 230 (271)
T ss_pred cCHHHHh
Confidence 4444444
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=327.86 Aligned_cols=209 Identities=13% Similarity=0.077 Sum_probs=166.6
Q ss_pred CchhHHHHHhhhcccC-------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 64 DGLNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~-------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+++|+++||+++|+.. ..+ +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 77 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVE----AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccc----eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 3578999999999631 112 6999999999999999999999999999999999999 899999999865
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh--cCccccccccccCcccccccccccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
.... .. .+++.++|+||++. +++..|+.+++........ ......+.+.++++.+++.+...++++
T Consensus 78 ~~~~---------~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (267)
T PRK15112 78 HFGD---------YS-YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP 147 (267)
T ss_pred CCCc---------hh-hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc
Confidence 3211 01 12237999999974 5677889888865321110 011122456778999999533344889
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||+++++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tviivsH~~~~--~~~~~d~i~~l 223 (267)
T PRK15112 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ--EKQGISYIYVTQHLGM--MKHISDQVLVM 223 (267)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCcEEEEEeCCHHH--HHHhcCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 3358999999996555 88899999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 224 ~~ 225 (267)
T PRK15112 224 HQ 225 (267)
T ss_pred EC
Confidence 76
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=316.63 Aligned_cols=208 Identities=15% Similarity=0.040 Sum_probs=164.0
Q ss_pred hhHHHHHhhhcccC-----CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee----cC
Q 016817 66 LNELRHKFLSYRSG-----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT----SS 135 (382)
Q Consensus 66 ~i~i~nvs~~y~~~-----~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~----~i 135 (382)
|++++|++++|+.. ... +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|. ++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~ 76 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLP----VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76 (224)
T ss_pred CEEEEeeEEEeecccCCCcceE----EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccch
Confidence 46789999999631 122 5999999999999999999999999999999999998 8999999842 22
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCC
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
.. ........++++.+||++|++.+++.+|+.+|+.+.....+.. ....+++.++++.+++.+...++++.+|
T Consensus 77 ~~------~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 77 AQ------ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred hh------cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 11 1112222233347999999999999999999997532211111 1112456678888999764444889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||||||++|||||+.+|++||||| +||+.++..+.+.|+++ +++|+|||+||||++. +..+||+++.+
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~g~tii~vsH~~~~--~~~~~d~i~~~ 222 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA---KARGAALIGIFHDEEV--RELVADRVMDV 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhcceeEec
Confidence 9999999999999999999999999 99999999999999998 3458999999996555 87888988765
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=325.63 Aligned_cols=206 Identities=17% Similarity=0.094 Sum_probs=164.9
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~ 138 (382)
.+++++|++++|+... +|+|+||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~------~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGSNH------VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCCee------eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 3688999999996432 5999999999999999999999999999999999987 4 89999999876411
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc---CccccccccccCcccccccc---ccccccC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE---GVHHNQRCLRSDDCALMKND---AEIDDLK 212 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~---~~~~~~~~~~~l~~~~L~~~---~~~~~~~ 212 (382)
. . ....+|. .++|+||++.+|+..|+.+|+.+....... .....+.+.++++.+++.+. ..++++.
T Consensus 77 ~----~---~~~~~~~-~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (253)
T PRK14267 77 D----V---DPIEVRR-EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148 (253)
T ss_pred c----c---ChHHHhh-ceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChh
Confidence 0 0 0112344 799999999999889999999754321110 01112345667788887421 2348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. +++|||++|||++. +..+||++++++
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~--~~~~~d~i~~l~ 222 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK----KEYTIVLVTHSPAQ--AARVSDYVAFLY 222 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----hCCEEEEEECCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 36899999996655 888999999997
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 223 ~ 223 (253)
T PRK14267 223 L 223 (253)
T ss_pred C
Confidence 6
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=326.29 Aligned_cols=229 Identities=17% Similarity=0.120 Sum_probs=194.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~ 136 (382)
..+.++++|++..|...+..++ ++++|||+|.+||++||||.||||||-..+.|+||++ + +|+|.|+|.++-
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~--aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVE--AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CCcceeeeccEEEEecCCcceE--eeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 4568899999999975544442 7999999999999999999999999999999999997 3 799999999764
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccc--cccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKN--DAEIDD 210 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~ 210 (382)
..+.++++.+|..+|+|+||+| .|.|-.|+...+.+...+.. .....++++.++++.+|+.+ ...+.|
T Consensus 81 ------~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 81 ------AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred ------cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 3445677778888999999997 47888899888877654442 22334466778899999974 223489
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
|++|||||||||.||+||+++|++||.|| +||..-+.+|+++|+++ +++.|+++++||||+.+ +.+++|+|.+
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L--q~~~gMa~lfITHDL~i--Vr~~ADrV~V 230 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL--QAELGMAILFITHDLGI--VRKFADRVYV 230 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH--HHHhCcEEEEEeccHHH--HHHhhhhEEE
Confidence 99999999999999999999999999999 99999999999999999 47789999999998888 9999999999
Q ss_pred hhh---cccccccceeeEE
Q 016817 288 CEY---LGVSEISGVYDIV 303 (382)
Q Consensus 288 l~~---~~~~~~~~v~~~~ 303 (382)
|.. +..+..+.+|..|
T Consensus 231 M~~G~ivE~~~t~~lF~~P 249 (534)
T COG4172 231 MQHGEIVETGTTETLFAAP 249 (534)
T ss_pred EeccEEeecCcHHHHhhCC
Confidence 987 6777778888654
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=315.37 Aligned_cols=201 Identities=14% Similarity=0.079 Sum_probs=168.1
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccc
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~ 140 (382)
..+++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 7 ~~~~~l~~~~l~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~-- 78 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEP------VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG-- 78 (214)
T ss_pred CCcceEEEeeEEEecCCce------eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--
Confidence 3456899999999996432 5999999999999999999999999999999999999 899999999865321
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+ +.++|++|++.+++..|+.+|+...... .+....+.+.++++.+++.+..+ +++.+|||||||
T Consensus 79 ----------~~~-~~i~~~~q~~~~~~~~t~~e~l~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~q 144 (214)
T PRK13543 79 ----------DRS-RFMAYLGHLPGLKADLSTLENLHFLCGL--HGRRAKQMPGSALAIVGLAGYED-TLVRQLSAGQKK 144 (214)
T ss_pred ----------hhh-hceEEeecCcccccCCcHHHHHHHHHHh--cCCcHHHHHHHHHHHcCChhhcc-CChhhCCHHHHH
Confidence 022 3799999999888888999999754311 12222344567788899986654 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||+||||++.+|++||||| +||+.++..+.+.|+++ .++|.|+|++|||++. +.++|+++++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH---LRGGGAALVTTHGAYA--APPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEecChhh--hhhhcceEEEEe
Confidence 9999999999999999999 99999999999999987 3458999999996665 899999988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=324.02 Aligned_cols=207 Identities=15% Similarity=0.098 Sum_probs=165.1
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
.+++|+++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 3 ~~~~l~~~~l~~~~~~~--~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 3 SPPKMEARGLSFFYGDF--Q----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CCcEEEEeeeEEEECCe--e----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 35689999999999642 2 5999999999999999999999999999999999963 5899999998764
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---cccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDL 211 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~ 211 (382)
... .....+|+ .++|++|++.+|+ .|+.+|+.+......... ...+++.++++.+++.+. ..++++
T Consensus 77 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (253)
T PRK14242 77 DPH-------VDVVELRR-RVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESA 147 (253)
T ss_pred ccc-------cCHHHHhh-cEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence 211 01112343 8999999998888 599999976432111101 112445667788887431 224789
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ + .+.|||++|||++. +.++||+++++
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~-~~~tvii~tH~~~~--~~~~~d~v~~l 221 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL---K-ARYTIIIVTHNMQQ--AARVSDVTAFF 221 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---h-cCCeEEEEEecHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3 36899999996655 88899999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 222 ~~ 223 (253)
T PRK14242 222 YM 223 (253)
T ss_pred EC
Confidence 76
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=329.45 Aligned_cols=216 Identities=17% Similarity=0.112 Sum_probs=170.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----- 70 (275)
T PRK13639 1 ILETRDLKYSYPDGT-E----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDK----- 70 (275)
T ss_pred CEEEEEEEEEeCCCC-e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECcccc-----
Confidence 467899999996322 2 5999999999999999999999999999999999999 8999999998763110
Q ss_pred hhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.....+++ .++|+||++. +++ .|+.+|+.+........ ....+++.++++.+++.+.. ++++.+|||||+||
T Consensus 71 --~~~~~~~~-~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~Gq~qr 145 (275)
T PRK13639 71 --KSLLEVRK-TVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKR 145 (275)
T ss_pred --chHHHHHh-heEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-cCChhhCCHHHHHH
Confidence 11112343 8999999963 454 79999996543211111 11124566788999998665 49999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
++|||||+.+|++||||| +||+.++..+.+.|+++ .+.|.|||++|||++. +..+||++++|++ +..++
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l---~~~~~til~vtH~~~~--~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL---NKEGITIIISTHDVDL--VPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999 99999999999999998 3358999999996555 8889999999976 44555
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
+++++.
T Consensus 221 ~~~~~~ 226 (275)
T PRK13639 221 PKEVFS 226 (275)
T ss_pred HHHHhc
Confidence 655654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=326.29 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=169.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 9 ~~~~l~~~~l~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQ------ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred cceeEEEeeeEEEeCCee------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 356899999999996422 5999999999999999999999999999999999986 4999999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccc---cccccccC
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKN---DAEIDDLK 212 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~---~~~~~~~~ 212 (382)
... .....+++ .++|+||++.+|+ .|+.+|+.+........ ....+.+.++++.+++.+ ...++++.
T Consensus 83 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 153 (258)
T PRK14268 83 EPD-------VDVVELRK-NVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPAL 153 (258)
T ss_pred ccc-------chHHHHhh-hEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChh
Confidence 211 01112343 7999999998888 89999997543211111 011234566788887732 22348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||+|||+|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|||+||||++. +.++||++++|+
T Consensus 154 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l---~-~~~tiiivsH~~~~--~~~~~d~i~~l~ 227 (258)
T PRK14268 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL---K-KDYTIVIVTHNMQQ--AARISDYTGFFL 227 (258)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH---h-hCCEEEEEECCHHH--HHHhCCEEEEEE
Confidence 999999999999999999999999999 99999999999999998 3 37999999996555 888999999997
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ +..+++++++
T Consensus 228 ~G~i~~~~~~~~~~ 241 (258)
T PRK14268 228 MGELIEFGQTRQIF 241 (258)
T ss_pred CCEEEEeCCHHHHh
Confidence 6 3344444444
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=356.78 Aligned_cols=238 Identities=15% Similarity=0.114 Sum_probs=192.1
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----c-CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCc
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----I-APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPP 97 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~ 97 (382)
++..|+.+++.....++.+..+.+|+.++++.++... . ...+.|+++||+|+|+++.++ +|+|+||+|++
T Consensus 272 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~----il~~i~l~i~~ 347 (529)
T TIGR02857 272 EFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRAP----ALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCcc----cccceeEEECC
Confidence 4678999999999999999999999999987543211 1 112469999999999764333 59999999999
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
|+.++|+||||||||||+|+|+|+++ ++|+|.+||.++.+.+. ..+|+ +++||+|++.+|+ .|++||+
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~---------~~lr~-~i~~v~Q~~~lf~-~ti~~Ni 416 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA---------DSWRD-QIAWVPQHPFLFA-GTIAENI 416 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH---------HHHHh-heEEEcCCCcccC-cCHHHHH
Confidence 99999999999999999999999999 89999999998764432 23555 8999999999998 7999999
Q ss_pred HHHHhhhhcCccccccccccCccccccccccc----------cccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDAEI----------DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~----------~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
... .+...++++.++++.+++.+++.+ .....||||||||++|||||+++|++||||| +||+
T Consensus 417 ~~~-----~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~ 491 (529)
T TIGR02857 417 RLA-----RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491 (529)
T ss_pred hcc-----CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 542 122344567777887777654431 2335699999999999999999999999999 9999
Q ss_pred CcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 244 KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 244 ~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+++.+.+.+.++. +++|+|+|||++ +.+. .||+|++|
T Consensus 492 ~~~~~i~~~l~~~~----~~~t~i~itH~~--~~~~-~~d~i~~l 529 (529)
T TIGR02857 492 ETEALVTEALRALA----QGRTVLLVTHRL--ALAE-RADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhc----CCCEEEEEecCH--HHHH-hCCEEEeC
Confidence 99999999999872 589999999954 4465 57777653
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=315.60 Aligned_cols=198 Identities=14% Similarity=0.091 Sum_probs=164.1
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|+ . .++++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 2 ~~~~l~~~~~--~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------- 66 (213)
T TIGR01277 2 ALDKVRYEYE--H------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA------- 66 (213)
T ss_pred eEEeeeEEeC--C------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC-------
Confidence 5789999995 2 3789999999999999999999999999999999999 8999999998764211
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..+ +.++|++|++.+|+.+|+.+|+.+..... ......++++.++++.+++.+... +.|.+||||||||++||
T Consensus 67 ----~~~-~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 67 ----PYQ-RPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-RLPEQLSGGQRQRVALA 140 (213)
T ss_pred ----hhc-cceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-CCcccCCHHHHHHHHHH
Confidence 123 37999999999998899999996532111 001112345667889999986654 99999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.++|+++. ++.|.|||+||||++. +..+||++++|++
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~~tii~vsh~~~~--~~~~~d~v~~l~~ 204 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC--SERQRTLLMVTHHLSD--ARAIASQIAVVSQ 204 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHhhcCeEEEEEC
Confidence 99999999999999 999999999999999983 3348999999996655 8888999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=361.33 Aligned_cols=241 Identities=17% Similarity=0.120 Sum_probs=197.0
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhh------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++.+|+..++.....+..+..+.+|+.++++.++.. .....+.|+++||+|+|++...+ +|+|+||+++
T Consensus 281 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~----il~~inl~i~ 356 (571)
T TIGR02203 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRP----ALDSISLVIE 356 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCCc----cccCeeEEec
Confidence 4788999999999999999999999999998765431 11123469999999999754333 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||+++|+|+||||||||+++|+|+++ ++|+|.++|.++.+... ..+|+ +++|++|++.+|+ .|+++|
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~---------~~~~~-~i~~v~Q~~~lf~-~Ti~~N 425 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL---------ASLRR-QVALVSQDVVLFN-DTIANN 425 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH---------HHHHh-hceEEccCccccc-ccHHHH
Confidence 999999999999999999999999999 89999999997654321 22554 8999999999997 799999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.... .+...++++.++++.+|+.+.+. +.| ..||||||||++||||++.+|++||||| +|
T Consensus 426 i~~~~----~~~~~~~~i~~~l~~~~l~~~i~-~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~L 500 (571)
T TIGR02203 426 IAYGR----TEQADRAEIERALAAAYAQDFVD-KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSAL 500 (571)
T ss_pred HhcCC----CCCCCHHHHHHHHHHcChHHHHH-hCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 95321 11344567778888888875543 333 3499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.+++.+++.|.++. .++|+|+|||++.. . ..||+|+.+++
T Consensus 501 D~~~~~~i~~~L~~~~----~~~tiIiitH~~~~--~-~~~D~ii~l~~ 542 (571)
T TIGR02203 501 DNESERLVQAALERLM----QGRTTLVIAHRLST--I-EKADRIVVMDD 542 (571)
T ss_pred CHHHHHHHHHHHHHHh----CCCEEEEEehhhHH--H-HhCCEEEEEeC
Confidence 9999999999999872 57999999996644 4 56888888875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=338.79 Aligned_cols=211 Identities=15% Similarity=0.069 Sum_probs=167.9
Q ss_pred HHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhh
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEH 149 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~ 149 (382)
|++++|++. .+ ++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....... ..
T Consensus 4 ~l~~~~~~~-------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~-----~~ 70 (354)
T TIGR02142 4 RFSKRLGDF-------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI-----FL 70 (354)
T ss_pred EEEEEECCE-------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcccc-----cc
Confidence 678888532 26 8999999999999999999999999999999998 8999999998764321100 01
Q ss_pred hhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh
Q 016817 150 NVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229 (382)
Q Consensus 150 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~ 229 (382)
...+ +.++|+||++.+|+++|+.+|+.+..... ......+++.++++.++|.+..+ +++.+|||||||||+|||||+
T Consensus 71 ~~~~-~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 71 PPEK-RRIGYVFQEARLFPHLSVRGNLRYGMKRA-RPSERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred chhh-CCeEEEecCCccCCCCcHHHHHHHHhhcc-ChhHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHH
Confidence 1123 37999999999999999999997643211 11112235677899999986654 999999999999999999999
Q ss_pred hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 230 NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 230 ~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
.+|++||||| +||+.++..+.+.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++++++.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~--~~~g~tiiivtH~~~~--~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLH--AEFGIPILYVSHSLQE--VLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999999 999999999999999983 3458999999996555 8889999999987 33444444543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=325.36 Aligned_cols=210 Identities=14% Similarity=0.098 Sum_probs=169.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCccc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~ 140 (382)
++++++||+++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|.++.....
T Consensus 3 ~~l~~~nl~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ------ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCCeE------EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 4789999999996432 5999999999999999999999999999999999997 4 4999999986532110
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh--------h-cCccccccccccCcccccccccccccc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM--------S-EGVHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~--------~-~~~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
. ......+++ .++|+||++.+|+.+|+.+|+....... . ......+++.++++.+++.+..+ +.+
T Consensus 77 ~----~~~~~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~ 150 (262)
T PRK09984 77 L----ARDIRKSRA-NTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-QRV 150 (262)
T ss_pred c----chhHHHHHh-heEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-CCc
Confidence 0 011122343 7999999999999899999996532100 0 01112245677888999986554 899
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tvii~tH~~~~--~~~~~d~i~~l 226 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN--QNDGITVVVTLHQVDY--ALRYCERIVAL 226 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 3358999999996665 88899999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 227 ~~ 228 (262)
T PRK09984 227 RQ 228 (262)
T ss_pred EC
Confidence 76
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=327.09 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=172.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++.... +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 5 ~~~l~i~~l~~~~~~~~~~----~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~--- 77 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASF----TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN--- 77 (269)
T ss_pred CceEEEEEEEEEcCCCCCc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC---
Confidence 5589999999999653222 5999999999999999999999999999999999999 8999999998764211
Q ss_pred eehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
...+++ .++|++|++. +|+..++.+|+.+........ ....+++.++++.+++.+... +++.+|||||||
T Consensus 78 ------~~~~~~-~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~q 149 (269)
T PRK13648 78 ------FEKLRK-HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-YEPNALSGGQKQ 149 (269)
T ss_pred ------HHHHHh-heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CCcccCCHHHHH
Confidence 112444 7999999974 666688889886543211111 111235667888999986554 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +.. ||+++++++ +..+
T Consensus 150 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~~~tiiivtH~~~~--~~~-~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK--SEHNITIISITHDLSE--AME-ADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCchH--Hhc-CCEEEEEECCEEEEec
Confidence 9999999999999999999 999999999999999973 3358999999997655 765 899988876 3444
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++++++.
T Consensus 225 ~~~~~~~ 231 (269)
T PRK13648 225 TPTEIFD 231 (269)
T ss_pred CHHHHhc
Confidence 5444443
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=325.41 Aligned_cols=208 Identities=15% Similarity=0.140 Sum_probs=166.5
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
.+.++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++
T Consensus 9 ~~~~~l~~~~l~~~~~~~--~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 9 TAPSKIQVRNLNFYYGKF--H----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CCCceEEEEEEEEEeCCe--E----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 456789999999999643 2 5999999999999999999999999999999999984 589999999876
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccc---cccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKN---DAEIDD 210 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~---~~~~~~ 210 (382)
.... .....+|+ .++|+||++.+|+ .|+.+|+.+....... . ....+++.++++.+++.+ ...+++
T Consensus 83 ~~~~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 83 LTPK-------QDIALLRA-KVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred cccc-------cchHHHhc-ceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 3210 01122444 8999999998888 8999999754321110 0 111245667788888742 123488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . .+.|||++|||++. +..++|++++
T Consensus 154 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~---~-~~~tiii~sH~~~~--~~~~~d~i~~ 227 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL---K-QDYTVVIVTHNMQQ--AARCSDYTAF 227 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 99999999999999998 2 36899999996655 8889999999
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
+++
T Consensus 228 l~~ 230 (260)
T PRK10744 228 MYL 230 (260)
T ss_pred EEC
Confidence 986
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=328.79 Aligned_cols=228 Identities=14% Similarity=0.074 Sum_probs=194.3
Q ss_pred CchhHHHHHhhhcccCCeee-----ecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCc
Q 016817 64 DGLNELRHKFLSYRSGDFWI-----PIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS 138 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v-----~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~ 138 (382)
...++.+++...|+-++..+ +..+++++||++++|+.+||||.||||||||-.+|.+|++++|+|.|+|+++...
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~ 353 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL 353 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc
Confidence 45789999999997532111 2348999999999999999999999999999999999999779999999987533
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCc---cccccccccCccccccccccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGV---HHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~---~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
..++...+|+ ++-.|||||+ |.|.+||.+.|.+......... ..++++.++|+.+||+....++||++
T Consensus 354 ------~~~~mrplR~-~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE 426 (534)
T COG4172 354 ------SRKEMRPLRR-RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE 426 (534)
T ss_pred ------Chhhhhhhhh-hceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc
Confidence 3344555776 8999999985 7899999999988764443222 23466788999999998777799999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||||+|||||++.+|++++||| +||..-+.++.++|+++ +++.|.+-++||||+.. +..+|++|++|++
T Consensus 427 FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L--Q~k~~LsYLFISHDL~V--vrAl~~~viVm~~ 502 (534)
T COG4172 427 FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL--QQKHGLSYLFISHDLAV--VRALCHRVIVMRD 502 (534)
T ss_pred cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH--HHHhCCeEEEEeccHHH--HHHhhceEEEEeC
Confidence 99999999999999999999999999 99999999999999999 47789999999997777 9999999999998
Q ss_pred ---cccccccceeeE
Q 016817 291 ---LGVSEISGVYDI 302 (382)
Q Consensus 291 ---~~~~~~~~v~~~ 302 (382)
+..|+.+++|+.
T Consensus 503 GkiVE~G~~~~if~~ 517 (534)
T COG4172 503 GKIVEQGPTEAVFAN 517 (534)
T ss_pred CEEeeeCCHHHHhcC
Confidence 778888889954
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=324.03 Aligned_cols=220 Identities=16% Similarity=0.062 Sum_probs=170.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec-----CCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-----SGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~-----i~~~ 138 (382)
++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|++ +...
T Consensus 5 ~~l~~~~l~~~~~~~~------il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK------GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCCce------eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 4789999999996432 5999999999999999999999999999999999998 89999999986 4321
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccccccccccCCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
. .......+++.++|++|++. +++..|+.+|+.+....+.. . ....+.+.++++.+++.+...++.+.+|
T Consensus 79 ~------~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 152 (258)
T PRK11701 79 S------EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF 152 (258)
T ss_pred C------HHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence 1 11111122237999999973 56667888888643211110 0 0112345677888898642234899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||+++++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~isH~~~~--~~~~~d~i~~l~~g 228 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLV--RELGLAVVIVTHDLAV--ARLLAHRLLVMKQG 228 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCCHHH--HHHhcCEEEEEECC
Confidence 9999999999999999999999999 999999999999999873 3358999999996655 8888999999987
Q ss_pred --ccccccccee
Q 016817 291 --LGVSEISGVY 300 (382)
Q Consensus 291 --~~~~~~~~v~ 300 (382)
+..+++++++
T Consensus 229 ~i~~~~~~~~~~ 240 (258)
T PRK11701 229 RVVESGLTDQVL 240 (258)
T ss_pred EEEEeCCHHHHh
Confidence 3344444444
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=359.83 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=178.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcc--
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSS-- 139 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~-- 139 (382)
.+++|+++|++++|+...... ++|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|.++....
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~--~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKI--AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CCceEEEeceEEEecCCCCce--eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccc
Confidence 356899999999996422111 16999999999999999999999999999999999998 8999999987542100
Q ss_pred --cceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhh-h-cCccccccccccCccccccc--ccccccc
Q 016817 140 --HTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWM-S-EGVHHNQRCLRSDDCALMKN--DAEIDDL 211 (382)
Q Consensus 140 --~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~-~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~ 211 (382)
............+|++.||||||++ .+++.+||.+|+.+..... + ......+++.++++.+||.+ ...++++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 0001111222234434799999997 6788899999997653221 1 11112345677899999963 2234899
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
++|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +.++||+|++|
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~--~~~g~tvi~itHdl~~--~~~~adri~vl 242 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ--KEMSMGVIFITHDMGV--VAEIADRVLVM 242 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HHHhCCEEEEe
Confidence 9999999999999999999999999999 999999999999999983 4458999999996666 88999999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..+++++++
T Consensus 243 ~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVETGSVEQIF 257 (623)
T ss_pred eCCeecccCCHHHhh
Confidence 86 4445555554
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=328.48 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=169.6
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++... ..++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++......
T Consensus 3 l~~~~l~~~~~~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~---- 77 (280)
T PRK13649 3 INLQNVSYTYQAGTPF-EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKN---- 77 (280)
T ss_pred EEEEEEEEEcCCCCcc-ccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccc----
Confidence 6789999999642100 0016999999999999999999999999999999999998 899999999876432100
Q ss_pred hhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 146 MEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.....+|+ .++|++|++ .+|+ .|+.+|+.+........ ....+.+.++++.+++.+...++++.+|||||||||
T Consensus 78 -~~~~~~~~-~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 154 (280)
T PRK13649 78 -KDIKQIRK-KVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV 154 (280)
T ss_pred -cCHHHHHh-heEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 01112343 799999996 4565 69999997543211111 111234567788889974333489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|+|||+||||++. +..+||+++++++ +..+++
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiiivsH~~~~--~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL---HQSGMTIVLVTHLMDD--VANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeccHHH--HHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999 99999999999999998 3358999999996655 8889999999976 334444
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
++++.
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 44543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=361.40 Aligned_cols=223 Identities=16% Similarity=0.132 Sum_probs=178.4
Q ss_pred CchhHHHHHhhhcccC---------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 64 DGLNELRHKFLSYRSG---------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~---------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
.++++++||++.|+.. ... +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~ 386 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVH----AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQ 386 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceE----EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCE
Confidence 4589999999999621 112 6999999999999999999999999999999999999 8999999998
Q ss_pred cCCCcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc--CccccccccccCcccccccccccc
Q 016817 134 SSGNSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEID 209 (382)
Q Consensus 134 ~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~ 209 (382)
++...+ ......+|+ .|+|+||++ .+++.+|+.+|+.+....... .....+++.++++.+||.....++
T Consensus 387 ~i~~~~------~~~~~~~~~-~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 459 (623)
T PRK10261 387 RIDTLS------PGKLQALRR-DIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459 (623)
T ss_pred ECCcCC------HHHHHHhcC-CeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC
Confidence 764321 111222343 899999997 588889999999764321111 111224567889999996322349
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
+|++|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +.++||+|+
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~--~~~g~tvi~isHdl~~--v~~~~dri~ 535 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQ--RDFGIAYLFISHDMAV--VERISHRVA 535 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEE
Confidence 999999999999999999999999999999 999999999999999983 4458999999997666 999999999
Q ss_pred hhhh---cccccccceee
Q 016817 287 ICEY---LGVSEISGVYD 301 (382)
Q Consensus 287 ll~~---~~~~~~~~v~~ 301 (382)
+|++ +..+++.+++.
T Consensus 536 vl~~G~iv~~g~~~~i~~ 553 (623)
T PRK10261 536 VMYLGQIVEIGPRRAVFE 553 (623)
T ss_pred EEECCEEEEecCHHHHhc
Confidence 9976 45566666664
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=321.38 Aligned_cols=200 Identities=15% Similarity=0.078 Sum_probs=164.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++||+++|+. . ..++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 1 ~l~~~~l~~~~~~-~-------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---- 68 (232)
T PRK10771 1 MLKLTDITWLYHH-L-------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---- 68 (232)
T ss_pred CeEEEEEEEEECC-c-------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh----
Confidence 4678999999963 2 348999999999999999999999999999999999 89999999986542211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh-hhcCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW-MSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.++|+||++.+|+.+|+.+|+.+.... ........+++.++++.+|+.+..+ +++.+|||||||||+
T Consensus 69 -------~~-~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ 139 (232)
T PRK10771 69 -------SR-RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-RLPGQLSGGQRQRVA 139 (232)
T ss_pred -------hh-ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-CCcccCCHHHHHHHH
Confidence 12 3799999999999888999999643211 0001112345677899999986654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||++.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 205 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC--QERQLTLLMVSHSLED--AARIAPRSLVVAD 205 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999 999999999999999973 3358999999996665 8889999999876
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=367.33 Aligned_cols=241 Identities=17% Similarity=0.109 Sum_probs=196.2
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
+++..|+.+++.+...++.+..+.+|+.++++.++... +...+.|+++||+|+|+.+..+ +|+|+||+|
T Consensus 405 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~----il~~i~l~i 480 (694)
T TIGR01846 405 GRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPE----VLSNLNLDI 480 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCcc----ccccceEEE
Confidence 46788999999999999999999999999998765311 1113468999999999754333 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|+.++|+||||||||||+|+|+|+++ ++|+|.+||.++.+.+. ..+|+ .++||+|++.+|+ .|++|
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~---------~~~r~-~i~~v~q~~~lf~-~ti~e 549 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP---------AWLRR-QMGVVLQENVLFS-RSIRD 549 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH---------HHHHH-hCeEEccCCeehh-hhHHH
Confidence 9999999999999999999999999999 89999999998764432 23565 8999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+... .+...++.+.++++.+++.+.+. ......||||||||++|||||+++|++||||| +|
T Consensus 550 Ni~~~-----~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~L 624 (694)
T TIGR01846 550 NIALC-----NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL 624 (694)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 99532 22234456666777776654432 12345699999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.|+++. .++|+|+|||++ +.+. .+|+++++++
T Consensus 625 D~~~~~~i~~~l~~~~----~~~t~i~itH~~--~~~~-~~d~ii~l~~ 666 (694)
T TIGR01846 625 DYESEALIMRNMREIC----RGRTVIIIAHRL--STVR-ACDRIIVLEK 666 (694)
T ss_pred CHHHHHHHHHHHHHHh----CCCEEEEEeCCh--HHHH-hCCEEEEEeC
Confidence 9999999999999872 579999999955 4465 4888888876
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=328.40 Aligned_cols=217 Identities=14% Similarity=0.062 Sum_probs=172.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+..... .+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 4 ~l~~~~l~~~~~~~~~~---~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~----- 75 (277)
T PRK13642 4 ILEVENLVFKYEKESDV---NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN----- 75 (277)
T ss_pred eEEEEEEEEEcCCCCcC---eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCC-----
Confidence 68899999999743211 15999999999999999999999999999999999999 8999999998764211
Q ss_pred hhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
...+++ .+||+||++. .++..|+.+|+.+......... ...+++.++++.+++.+... +++.+|||||||||
T Consensus 76 ----~~~~~~-~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv 149 (277)
T PRK13642 76 ----VWNLRR-KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-REPARLSGGQKQRV 149 (277)
T ss_pred ----HHHHhc-ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHH
Confidence 112443 8999999974 5666899999975432111111 11234567888999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +. .||+++++++ +..+++
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tiil~sH~~~~--~~-~~d~i~~l~~G~i~~~g~~ 224 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK--EKYQLTVLSITHDLDE--AA-SSDRILVMKAGEIIKEAAP 224 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HH-hCCEEEEEECCEEEEeCCH
Confidence 99999999999999999 999999999999999983 3358999999996665 76 5899998876 445555
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
++++.
T Consensus 225 ~~~~~ 229 (277)
T PRK13642 225 SELFA 229 (277)
T ss_pred HHHhc
Confidence 55553
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=321.87 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=163.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh---c-ccceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL---S-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~---~-~~G~I~i~G~~i~~~~~~ 141 (382)
+++++|+++.|++. . +|+|+||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++....
T Consensus 2 ~~~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~-- 73 (246)
T PRK14269 2 IAKTTNLNLFYGKK--Q----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD-- 73 (246)
T ss_pred ceeeeeeEEEECCE--e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC--
Confidence 57889999999642 2 599999999999999999999999999999999997 3 6999999999764321
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc---CccccccccccCcccccccc---ccccccCCCc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE---GVHHNQRCLRSDDCALMKND---AEIDDLKSSP 215 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~---~~~~~~~~~~~l~~~~L~~~---~~~~~~~~LS 215 (382)
...+|+ .++|+||++.+|+ .|+.+|+.+....... .....+++.++++.+++.+. ..++++.+||
T Consensus 74 -------~~~~~~-~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 144 (246)
T PRK14269 74 -------VVALRK-NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALS 144 (246)
T ss_pred -------HHHHhh-hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCC
Confidence 112344 8999999999998 7999999754311110 01122345677888888532 2347889999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . .|+|+|+||||++. +..+||+++++++
T Consensus 145 ~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~tH~~~~--~~~~~d~i~~l~~ 216 (246)
T PRK14269 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL---S-HNLSMIMVTHNMQQ--GKRVADYTAFFHL 216 (246)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---h-CCCEEEEEecCHHH--HHhhCcEEEEEEC
Confidence 999999999999999999999999 99999999999999997 3 37999999996555 8889999999986
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=323.18 Aligned_cols=202 Identities=17% Similarity=0.060 Sum_probs=165.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 2 l~~~~l~~~~~~~--~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----- 70 (256)
T TIGR03873 2 LRLSRVSWSAGGR--L----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR----- 70 (256)
T ss_pred ceEEeEEEEECCE--E----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH-----
Confidence 5678999999643 2 5999999999999999999999999999999999999 89999999986543211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-h-cC---ccccccccccCccccccccccccccCCCccceee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-S-EG---VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~-~~---~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
...++ .++|++|++.+++..|+.+|+.+..... . .. ....+++.++++.+++.+... +++.+|||||||
T Consensus 71 ----~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~q 144 (256)
T TIGR03873 71 ----RARAR-RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-RDMSTLSGGERQ 144 (256)
T ss_pred ----HHHhh-heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHH
Confidence 11333 7999999987777789999997542111 0 01 112235677888999986554 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..+.+.|+++ +++|.|||++|||++. +..+||++++|++
T Consensus 145 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 212 (256)
T TIGR03873 145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL---AATGVTVVAALHDLNL--AASYCDHVVVLDG 212 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999999 99999999999999998 3458999999996665 8889999999976
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=327.59 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=172.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++++|++++|+++......++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~--- 78 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE--- 78 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc---
Confidence 357899999999974311000016999999999999999999999999999999999999 8999999998664211
Q ss_pred eehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCcccee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
....++ +.+||+||++. +++ .++.+|+.+.....+ ......+++.++++.+||.+... +++.+||||||
T Consensus 79 -----~~~~~~-~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~ 150 (280)
T PRK13633 79 -----NLWDIR-NKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-HAPHLLSGGQK 150 (280)
T ss_pred -----cHHHHh-hheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHH
Confidence 111134 38999999974 444 688999865432211 11112345677899999987655 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +.. ||+++++++ +..
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tillvtH~~~~--~~~-~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELN--KKYGITIILITHYMEE--AVE-ADRIIVMDSGKVVME 225 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecChHH--Hhc-CCEEEEEECCEEEEe
Confidence 99999999999999999999 999999999999999983 3358999999996665 765 888888876 345
Q ss_pred ccccceee
Q 016817 294 SEISGVYD 301 (382)
Q Consensus 294 ~~~~~v~~ 301 (382)
+++++++.
T Consensus 226 g~~~~~~~ 233 (280)
T PRK13633 226 GTPKEIFK 233 (280)
T ss_pred cCHHHHhc
Confidence 55555553
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=351.50 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=169.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++.....
T Consensus 3 ~~i~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--- 73 (501)
T PRK10762 3 ALLQLKGIDKAFPGV--K----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP--- 73 (501)
T ss_pred ceEEEeeeEEEeCCe--E----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---
Confidence 478999999999642 2 5999999999999999999999999999999999998 89999999987632111
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC----ccccccccccCccccccccccccccCCCccce
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG----VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~----~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
.. .+++.+||+||++.+++.+|+.+|+.+...... .. ...++++.++++.+|+.+..+ +++.+|||||
T Consensus 74 ---~~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~ 146 (501)
T PRK10762 74 ---KS---SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD-KLVGELSIGE 146 (501)
T ss_pred ---HH---HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHH
Confidence 11 122379999999999999999999976421110 01 011235677899999986654 8999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+|||||+.+|++||||| +||+.++..+.++|+++ ++.|.|||+||||++. +..+||+++++++
T Consensus 147 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~~~tvii~sHd~~~--~~~~~d~i~~l~~ 216 (501)
T PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL---KSQGRGIVYISHRLKE--IFEICDDVTVFRD 216 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 999999999999999999999 99999999999999998 3458999999996665 8899999999976
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=309.55 Aligned_cols=194 Identities=13% Similarity=0.026 Sum_probs=162.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++.. +|+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 l~i~~l~~~~~~~~------~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 68 (201)
T cd03231 1 LEADELTCERDGRA------LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR------ 68 (201)
T ss_pred CEEEEEEEEeCCce------eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc------
Confidence 35789999996432 5999999999999999999999999999999999999 8999999998653210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..+++ .++|++|++.+++..|+.+|+.... .....+++.++++.+++.+.. ++++.+||||||||++||
T Consensus 69 ----~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~-----~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la 137 (201)
T cd03231 69 ----DSIAR-GLLYLGHAPGIKTTLSVLENLRFWH-----ADHSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRVALA 137 (201)
T ss_pred ----HHhhh-heEEeccccccCCCcCHHHHHHhhc-----ccccHHHHHHHHHHcCChhhh-cCchhhCCHHHHHHHHHH
Confidence 12343 8999999998888899999996532 111334567788999998655 489999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .+.|.|+|++|||... ...+|++++++
T Consensus 138 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiii~sH~~~~--~~~~~~~~~~~ 198 (201)
T cd03231 138 RLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH---CARGGMVVLTTHQDLG--LSEAGARELDL 198 (201)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCchh--hhhccceeEec
Confidence 99999999999999 99999999999999987 3458999999996554 77788888765
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=321.04 Aligned_cols=217 Identities=13% Similarity=0.139 Sum_probs=168.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
++.++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 2 ~~~l~~~nl~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 2 NNKVKLEQLNVHFGKN--H----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred CcEEEEEEEEEEeCCe--e----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 3468899999999642 2 5999999999999999999999999999999999974 37999999987642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCcccccccc---ccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKND---AEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~---~~~~~~~ 212 (382)
... ....+|+ .++|+||++.+|+..|+.+|+......... . ....+++.++++.+++... ..++.+.
T Consensus 76 ~~~-------~~~~~~~-~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (252)
T PRK14256 76 RGV-------DPVSIRR-RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAM 147 (252)
T ss_pred ccC-------ChHHhhc-cEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcC
Confidence 110 1112343 799999999999989999999653211111 0 1112345667778887531 2237899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|||++|||++. +..+||++++++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~tiiivsH~~~~--~~~~~d~i~~l~ 221 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK----EKYTIIIVTHNMQQ--AARVSDYTAFFY 221 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----hCCcEEEEECCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 35899999996555 888999999997
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ ...+++++++
T Consensus 222 ~G~i~~~~~~~~~~ 235 (252)
T PRK14256 222 MGDLVECGETKKIF 235 (252)
T ss_pred CCEEEEeCCHHHHH
Confidence 6 3344444444
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=323.83 Aligned_cols=209 Identities=15% Similarity=0.109 Sum_probs=167.2
Q ss_pred cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeec
Q 016817 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTS 134 (382)
Q Consensus 61 ~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~ 134 (382)
....++|+++||+++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|++
T Consensus 14 ~~~~~~l~~~nl~~~~~~~--~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 14 TATEIKMRARDVSVFYGEK--Q----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87 (267)
T ss_pred cCCCceEEEEeEEEEECCE--E----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE
Confidence 3456789999999999642 2 5999999999999999999999999999999999985 58999999987
Q ss_pred CCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--Cc-cccccccccCcccccccc---ccc
Q 016817 135 SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GV-HHNQRCLRSDDCALMKND---AEI 208 (382)
Q Consensus 135 i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~-~~~~~~~~~l~~~~L~~~---~~~ 208 (382)
+.... .....+|+ .++|++|++.+|+ .|+.+|+.+....... .. ...+++.++++.+++.+. ..+
T Consensus 88 i~~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 88 IYDPR-------LDVVELRA-RVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred Ccccc-------cchHHHhh-ceEEEecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhh
Confidence 64211 01112343 8999999998888 5999999754321111 11 112345678888888531 224
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. .+.|||++|||++. +..+||++
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~----~~~tiiivtH~~~~--~~~~~d~v 232 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR----QNYTIVIVTHSMQQ--AARVSQRT 232 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh----cCCeEEEEEcCHHH--HHhhCCEE
Confidence 7899999999999999999999999999999 999999999999999983 36899999996555 88899999
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
+++++
T Consensus 233 ~~l~~ 237 (267)
T PRK14235 233 AFFHL 237 (267)
T ss_pred EEEEC
Confidence 99876
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=384.82 Aligned_cols=238 Identities=15% Similarity=0.092 Sum_probs=193.5
Q ss_pred cchhhhhhhccCCCCccccchhHHHHHHhhhh-h------hc-----CcCchhHHHHHhhhcccCC-eeeecCCcccCCC
Q 016817 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERL-A------LI-----APDGLNELRHKFLSYRSGD-FWIPIGGIQKGGM 93 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~-----~~~~~i~i~nvs~~y~~~~-~~v~~~vL~~isl 93 (382)
.++..++.+..++..+..+.+|+.++++.++. + .. ...+.|+++||+|+|++.. .+ +|+|+||
T Consensus 1114 ~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~----vL~~lsl 1189 (1466)
T PTZ00265 1114 SYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVP----IYKDLTF 1189 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCc----cccCeeE
Confidence 46777888889999999999999999976431 0 00 1124699999999997532 22 6999999
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhcc-------------------------------------------------
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSR------------------------------------------------- 124 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~------------------------------------------------- 124 (382)
+|++|+++|||||||||||||+++|.|++++
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999983
Q ss_pred ------cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCc
Q 016817 125 ------SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDD 198 (382)
Q Consensus 125 ------~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~ 198 (382)
+|+|++||.++.++.. ..+|+ .||||+|++.||+ .|++|||.+. .....++++.++++
T Consensus 1270 ~~~~~~~G~I~idG~di~~~~~---------~~lR~-~i~~V~Qep~LF~-gTIreNI~~g-----~~~at~eeI~~A~k 1333 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDYNL---------KDLRN-LFSIVSQEPMLFN-MSIYENIKFG-----KEDATREDVKRACK 1333 (1466)
T ss_pred cccCCCCCeEEECCEEHHhCCH---------HHHHh-hccEeCCCCcccc-ccHHHHHhcC-----CCCCCHHHHHHHHH
Confidence 8999999998865442 23665 9999999999997 8999999643 23345567888888
Q ss_pred ccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCC
Q 016817 199 CALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNEN 264 (382)
Q Consensus 199 ~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ 264 (382)
.+++.+++. ..| .+||||||||++|||||+++|+|||||| +||+++++.|++.|.++. ..+++
T Consensus 1334 ~A~l~~fI~-~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~--~~~~~ 1410 (1466)
T PTZ00265 1334 FAAIDEFIE-SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK--DKADK 1410 (1466)
T ss_pred HcCCHHHHH-hCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh--ccCCC
Confidence 888876554 333 3499999999999999999999999999 999999999999999872 13589
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 265 PILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 265 tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|+||| +++++. .||+|+++++
T Consensus 1411 TvIiIaH--Rlsti~-~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1411 TIITIAH--RIASIK-RSDKIVVFNN 1433 (1466)
T ss_pred EEEEEec--hHHHHH-hCCEEEEEeC
Confidence 9999999 666676 4777777764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=320.53 Aligned_cols=210 Identities=16% Similarity=0.076 Sum_probs=164.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec-----CCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-----SGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~-----i~~~ 138 (382)
++++++|++++|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|++ +...
T Consensus 2 ~~l~~~~l~~~~~~~~------~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK------GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCCce------EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 4788999999996432 5999999999999999999999999999999999998 89999999975 3211
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccccccccccCCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
...+....+++.++|++|++. +++..++.+|+.+....... . ....+.+.++++.+++.+...++.+.+|
T Consensus 76 ------~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L 149 (253)
T TIGR02323 76 ------SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAF 149 (253)
T ss_pred ------CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhc
Confidence 111221122237999999974 44556788888543211110 0 0122456678889999632234899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||+++++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tii~vsH~~~~--~~~~~d~~~~l~~ 224 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV--RDLGLAVIIVTHDLGV--ARLLAQRLLVMQQ 224 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 9999999999999999999999999 999999999999999873 3458999999996655 8888999999876
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=350.72 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=169.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~ 141 (382)
++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 4 ~~l~~~nl~~~~~~~--~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-- 75 (506)
T PRK13549 4 YLLEMKNITKTFGGV--K----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN-- 75 (506)
T ss_pred ceEEEeeeEEEeCCe--E----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC--
Confidence 579999999999642 2 5999999999999999999999999999999999987 3999999998764221
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-c---cccccccccCccccccccccccccCCCccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-V---HHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
.. ..+++.+||+||++.+++.+|+.+|+.+........ . ...+++.++++.+++.+.. ++++.+||||
T Consensus 76 ----~~---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG 147 (506)
T PRK13549 76 ----IR---DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-ATPVGNLGLG 147 (506)
T ss_pred ----HH---HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-ccchhhCCHH
Confidence 01 112237999999999999899999997543211001 0 1124567789999997655 4999999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||||+.+|++||||| +||+.++..+.++|.++ .++|.|||+||||++. +..+||+++++++
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~~~tvi~~tH~~~~--~~~~~d~v~~l~~ 218 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL---KAHGIACIYISHKLNE--VKAISDTICVIRD 218 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCcHHH--HHHhcCEEEEEEC
Confidence 9999999999999999999999 99999999999999998 3468999999996665 8889999999876
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=351.66 Aligned_cols=205 Identities=14% Similarity=0.080 Sum_probs=169.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++...+.
T Consensus 4 ~~l~~~~l~~~~~~~--~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~--- 74 (510)
T PRK09700 4 PYISMAGIGKSFGPV--H----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH--- 74 (510)
T ss_pred ceEEEeeeEEEcCCe--E----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH---
Confidence 578999999999643 2 5999999999999999999999999999999999998 89999999987643221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCc------cccccccccCccccccccccccccCCCc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGV------HHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~------~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
.. .+++.+||+||++.+++.+|+.+|+.+...... .+. ...+++.++++.+|+.+.. ++++.+||
T Consensus 75 ---~~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS 147 (510)
T PRK09700 75 ---KL---AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-DEKVANLS 147 (510)
T ss_pred ---HH---HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-ccchhhCC
Confidence 11 122379999999999998999999965321100 010 1124567788999998655 49999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.++|+++ ++.|+|||+||||++. +..+||+++++++
T Consensus 148 gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tiiivsHd~~~--~~~~~d~v~~l~~ 220 (510)
T PRK09700 148 ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL---RKEGTAIVYISHKLAE--IRRICDRYTVMKD 220 (510)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999999999 99999999999999998 3358999999996665 8889999999876
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=335.06 Aligned_cols=250 Identities=15% Similarity=0.099 Sum_probs=207.7
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhh-----hhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-----ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
|...|++.+......+-.+..+..|+.+++...+. +.+.+++.+.++++++.-++.+++ +|+++||++.+|
T Consensus 287 RaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~p----il~~isF~l~~G 362 (580)
T COG4618 287 RALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKP----ILKGISFALQAG 362 (580)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCc----ceecceeEecCC
Confidence 55789999999999999999999999999998875 456678899999999966655544 599999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|.+|||||||||||||.|+|.|.++ .+|.|.+||-++..+.. .+ += ++|||+||+..||+ .||.|||.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~------e~---lG-~hiGYLPQdVeLF~-GTIaeNIa 431 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR------EQ---LG-RHIGYLPQDVELFD-GTIAENIA 431 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCH------HH---hc-cccCcCcccceecC-CcHHHHHH
Confidence 9999999999999999999999999 89999999998764432 22 22 48999999999999 89999996
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
.+ ....+.+.+.++.+..|.++.+. +.|. .||||||||+++||||..+|.+++||| +||.
T Consensus 432 Rf-----~~~~d~~kIieAA~lAgvHelIl-~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 432 RF-----GEEADPEKVIEAARLAGVHELIL-RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred hc-----cccCCHHHHHHHHHHcChHHHHH-hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 33 23345566777777777766554 5554 399999999999999999999999999 9999
Q ss_pred CcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 244 KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 244 ~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
..+..+.+.|.++ +++|.|+|+||| +.+ +...+|+|.+|++ -..|+.++|+
T Consensus 506 ~GE~AL~~Ai~~~---k~rG~~vvviaH--RPs-~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 506 EGEAALAAAILAA---KARGGTVVVIAH--RPS-ALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred hHHHHHHHHHHHH---HHcCCEEEEEec--CHH-HHhhcceeeeecCChHHhcCCHHHHH
Confidence 9999999999998 678999999999 543 4557899999987 3455555555
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=322.42 Aligned_cols=208 Identities=18% Similarity=0.110 Sum_probs=164.9
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
+...+++++|++++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++
T Consensus 9 ~~~~~l~i~nl~~~~~~~--~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 9 SKNIIISLQNVTISYGTF--E----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred CCCceEEEEeEEEEECCE--E----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 345689999999999643 2 5999999999999999999999999999999999975 589999999875
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccc---cccccccC
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN---DAEIDDLK 212 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~ 212 (382)
.... .....+|+ .++|+||++.+|+ .|+.+|+.+............+++.++++.+++.. ...++++.
T Consensus 83 ~~~~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 153 (269)
T PRK14259 83 YDPR-------VDPVEVRR-RIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGY 153 (269)
T ss_pred cccc-------CCHHHHhh-ceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcc
Confidence 3210 01112444 7999999998888 59999997643211111111234455677776531 12348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ + ++.|||++|||++. +..+||++++|+
T Consensus 154 ~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~-~~~tiiivtH~~~~--~~~~~d~i~~l~ 227 (269)
T PRK14259 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL---K-KNFTIVIVTHNMQQ--AVRVSDMTAFFN 227 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhcCEEEEEe
Confidence 999999999999999999999999999 99999999999999997 2 36899999996655 889999999998
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 228 ~ 228 (269)
T PRK14259 228 A 228 (269)
T ss_pred c
Confidence 5
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=308.20 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=158.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 1 ml~~~~l~~~~~~~~------il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~------ 68 (200)
T PRK13540 1 MLDVIELDFDYHDQP------LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD------ 68 (200)
T ss_pred CEEEEEEEEEeCCee------EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC------
Confidence 467899999996432 5999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+++ .++|++|++.+++..|+.+|+.+.... . .....+.++++.+++.+.. ++++.+|||||+||++|
T Consensus 69 ----~~~~~~-~i~~~~q~~~~~~~~tv~~~~~~~~~~---~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv~l 138 (200)
T PRK13540 69 ----LCTYQK-QLCFVGHRSGINPYLTLRENCLYDIHF---S-PGAVGITELCRLFSLEHLI-DYPCGLLSSGQKRQVAL 138 (200)
T ss_pred ----HHHHHh-heEEeccccccCcCCCHHHHHHHHHhc---C-cchHHHHHHHHHcCCchhh-hCChhhcCHHHHHHHHH
Confidence 112444 899999999888889999998754211 1 1223567788888887654 48889999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||++||+... +..+|-.+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH---RAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH---HHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999 99999999999999997 3468999999997666 65544333
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=321.38 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=163.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~l~i~~v~~~~~~~~------~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGSFH------AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECCEe------eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 688999999996432 5999999999999999999999999999999999985 3999999998653210
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccc---cccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKN---DAEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~---~~~~~~~~~L 214 (382)
. ....+++ .++|+||++.+|+..|+.+|+.+....... ....++.+.++++.+++.+ ...++++.+|
T Consensus 78 ----~---~~~~~~~-~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 149 (258)
T PRK14241 78 ----V---DPVAVRR-TIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGL 149 (258)
T ss_pred ----c---ChHHHhc-ceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC
Confidence 0 0112343 899999999999989999999754321110 1111234566788888742 1234889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. +++|||+||||++. +.++||++++++
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tviivsH~~~~--~~~~~d~i~~l~ 221 (258)
T PRK14241 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK----QDYTIVIVTHNMQQ--AARVSDQTAFFN 221 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHH--HHHhCCEEEEEe
Confidence 9999999999999999999999999 999999999999999982 35899999996555 888999999885
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=320.95 Aligned_cols=217 Identities=12% Similarity=0.139 Sum_probs=169.1
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++|+++.|+... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.
T Consensus 9 ~~~~l~i~~l~~~~~~~~------~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHH------ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred CCceEEEeeEEEEECCee------eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 345899999999996432 5999999999999999999999999999999999985 3899999998763
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---cccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDL 211 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~ 211 (382)
... .....+|+ .+||+||++.+|+ .|+.+|+.+......... ...+++.++++.+++.+. ..++.+
T Consensus 83 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~ 153 (259)
T PRK14274 83 KGK-------VDLVELRK-NIGMVFQKGNPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA 153 (259)
T ss_pred ccc-------cCHHHHhh-ceEEEecCCcccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 210 01112344 8999999998888 499999965432111000 112335566777777531 234889
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++ . .+.|+|+||||++. +.++||++++|
T Consensus 154 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiiivtH~~~~--~~~~~d~i~~l 227 (259)
T PRK14274 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL---K-EKYTIVIVTHNMQQ--AARVSDQTAFF 227 (259)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---h-cCCEEEEEEcCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3 36899999996554 88899999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..+++++++
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 76 3445555554
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=313.86 Aligned_cols=195 Identities=14% Similarity=0.153 Sum_probs=164.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. . +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 1 l~l~~v~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~------- 67 (223)
T TIGR03740 1 LETKNLSKRFGKQ--T----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK------- 67 (223)
T ss_pred CEEEeEEEEECCE--E----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc-------
Confidence 3578999999642 2 5999999999999999999999999999999999998 899999999854310
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
.+ +.++|+||++.+++..|+.+|+....... + ....++.++++.+++.+..+ +.+.+|||||+||++||
T Consensus 68 ------~~-~~~~~~~q~~~~~~~~t~~~~~~~~~~~~--~-~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~la 136 (223)
T TIGR03740 68 ------DL-HKIGSLIESPPLYENLTARENLKVHTTLL--G-LPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIA 136 (223)
T ss_pred ------cc-ccEEEEcCCCCccccCCHHHHHHHHHHHc--C-CCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHH
Confidence 01 27999999998888899999996543211 1 12345677889999986654 89999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||++.+|++||||| +||+.++..+.+.|+++ .+.|.|||++|||++. +..+||+++++++
T Consensus 137 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 199 (223)
T TIGR03740 137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSF---PEQGITVILSSHILSE--VQQLADHIGIISE 199 (223)
T ss_pred HHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHHhcCEEEEEeC
Confidence 99999999999999 99999999999999998 3358999999996665 8889999998876
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=311.07 Aligned_cols=199 Identities=16% Similarity=0.042 Sum_probs=161.4
Q ss_pred HHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhh
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEH 149 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~ 149 (382)
||+|+|++.. + |+||+|++ |+++|+||||||||||+++|+|+++ ++|+|.++|.++...... ...
T Consensus 5 ~l~~~~~~~~-------~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-----~~~ 70 (214)
T cd03297 5 DIEKRLPDFT-------L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKK-----INL 70 (214)
T ss_pred eeeEecCCee-------e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccch-----hhh
Confidence 8899996533 4 99999999 9999999999999999999999999 899999999875421100 011
Q ss_pred hhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh
Q 016817 150 NVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229 (382)
Q Consensus 150 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~ 229 (382)
...++ .++|++|++.+|+.+|+.+|+.+..... .....++++.++++.+++.+... +++.+||||||||++|||||+
T Consensus 71 ~~~~~-~i~~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 71 PPQQR-KIGLVFQQYALFPHLNVRENLAFGLKRK-RNREDRISVDELLDLLGLDHLLN-RYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred hhHhh-cEEEEecCCccCCCCCHHHHHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhh-cCcccCCHHHHHHHHHHHHHh
Confidence 12343 8999999999998899999997543111 11112345677889999986554 899999999999999999999
Q ss_pred hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 230 NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 230 ~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.+|++||||| +||+.++..+.++|+++. ++.|+|||++|||++. +..+||+++++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 207 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIK--KNLNIPVIFVTHDLSE--AEYLADRIVVMED 207 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCcEEEEEecCHHH--HHHhcCEEEEEEC
Confidence 9999999999 999999999999999983 3348999999996655 8888999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=326.55 Aligned_cols=204 Identities=15% Similarity=0.058 Sum_probs=164.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c--------cceeeeEeecCC
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--------SGLVLFAQTSSG 136 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~--------~G~I~i~G~~i~ 136 (382)
|++++|++++|++. . +|+++||+|++|++++|+||||||||||+|+|+|+++ + +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~~--~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRHR--A----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECCE--e----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 47789999999543 2 5999999999999999999999999999999999998 6 899999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--C---ccccccccccCcccccccccccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--G---VHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~---~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
... . ...++ .++|+||++.+++.+|+.+|+.+....... . ....+.+.++++.+++.+... +++
T Consensus 75 ~~~------~---~~~~~-~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~ 143 (272)
T PRK13547 75 AID------A---PRLAR-LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-RDV 143 (272)
T ss_pred cCC------H---HHHHh-hcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-CCc
Confidence 211 1 11333 689999998755558999999653211100 0 111234667888999987654 899
Q ss_pred CCCccceeeecceeeeeh---------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhh
Q 016817 212 KSSPKYVLRRVDFAMVVS---------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEE 279 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~---------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~ 279 (382)
.+|||||||||+|||||+ .+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +.
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tviiisH~~~~--~~ 219 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLA--RDWNLGVLAIVHDPNL--AA 219 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEECCHHH--HH
Confidence 999999999999999999 4999999999 999999999999999983 3348999999996655 88
Q ss_pred hhhhhhhhhhh
Q 016817 280 RLDARLKICEY 290 (382)
Q Consensus 280 ~~~d~v~ll~~ 290 (382)
++||+++++++
T Consensus 220 ~~~d~i~~l~~ 230 (272)
T PRK13547 220 RHADRIAMLAD 230 (272)
T ss_pred HhCCEEEEEEC
Confidence 89999999976
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=327.21 Aligned_cols=226 Identities=13% Similarity=0.126 Sum_probs=170.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+.|+++|++++|+++... ..++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++.....
T Consensus 5 ~~l~i~nl~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--- 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPF-EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK--- 80 (289)
T ss_pred ceEEEEEEEEEeCCCCcc-ccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc---
Confidence 468899999999643200 0015999999999999999999999999999999999998 89999999987531100
Q ss_pred ehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.......+|+ .++|++|++. +++ .|+.+|+.+........ ....+++.++++.+++.+...++++.+|||||||
T Consensus 81 -~~~~~~~~~~-~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 81 -KIKEVKRLRK-EIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred -ccccHHHHhc-cEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH
Confidence 0001122444 7999999963 454 69999997543211111 1112345667888898532334899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +.++||+++++++ +..+
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiiiisH~~~~--~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLN--KEYKKRIIMVTHNMDQ--VLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999 999999999999999983 3358999999996554 8889999999987 3344
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++.+++.
T Consensus 234 ~~~~~~~ 240 (289)
T PRK13645 234 SPFEIFS 240 (289)
T ss_pred CHHHHhc
Confidence 4444543
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=350.04 Aligned_cols=203 Identities=12% Similarity=0.017 Sum_probs=170.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 9 ~~~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-- 80 (510)
T PRK15439 9 PPLLCARSISKQYSGVE------VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP-- 80 (510)
T ss_pred CceEEEEeEEEEeCCce------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH--
Confidence 45899999999996432 5999999999999999999999999999999999998 89999999987642211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
. ..+++.+||++|++.+++.+|+.+|+.+... ......+++.++++.+++.+... +++.+|||||||||
T Consensus 81 ----~---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv 149 (510)
T PRK15439 81 ----A---KAHQLGIYLVPQEPLLFPNLSVKENILFGLP---KRQASMQKMKQLLAALGCQLDLD-SSAGSLEVADRQIV 149 (510)
T ss_pred ----H---HHHhCCEEEEeccCccCCCCcHHHHhhcccc---cchHHHHHHHHHHHHcCCCcccc-CChhhCCHHHHHHH
Confidence 1 1222369999999999999999999965321 11112345677899999986654 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..+||+++++++
T Consensus 150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiiivtHd~~~--~~~~~d~i~~l~~ 215 (510)
T PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIREL---LAQGVGIVFISHKLPE--IRQLADRISVMRD 215 (510)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999 99999999999999998 3458999999996666 8889999999976
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=319.23 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=166.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--c----cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--R----SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~----~G~I~i~G~~i~~~ 138 (382)
++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+.+ + +|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~------~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNKKK------ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECCee------eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 4789999999996432 5999999999999999999999999999999999853 2 89999999876421
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCccccccc---cccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKN---DAEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~---~~~~~~~~~ 213 (382)
. .....+|+ .++|+||++.+|+ .|+.+|+.+......... ...+.+.++++.+++.+ ...++.+.+
T Consensus 78 ~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 148 (252)
T PRK14239 78 R-------TDTVDLRK-EIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG 148 (252)
T ss_pred c-------cchHhhhh-cEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCccc
Confidence 1 01112343 7999999998887 899999975432111111 11234455677777642 123488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. ++.|||++|||++. +..+||+++++++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~--~~~~~d~i~~l~~ 222 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK----DDYTMLLVTRSMQQ--ASRISDRTGFFLD 222 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh----hCCeEEEEECCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999 999999999999999972 35899999996554 8889999999986
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..++..+++
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T PRK14239 223 GDLIEYNDTKQMF 235 (252)
T ss_pred CEEEEeCCHHHHH
Confidence 3344444444
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=388.84 Aligned_cols=248 Identities=13% Similarity=0.137 Sum_probs=201.2
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------c----CcCchhHHHHHhhhcccCCeeeecCCcccCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------I----APDGLNELRHKFLSYRSGDFWIPIGGIQKGG 92 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~i~i~nvs~~y~~~~~~v~~~vL~~is 92 (382)
.+..|+..+......++....+.+|+.++++.+++.. + +..+.|+++||+++|+.+..+ +|+|+|
T Consensus 1181 ~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~----vL~~is 1256 (1495)
T PLN03232 1181 NITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPP----VLHGLS 1256 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCc----ccccce
Confidence 3556777777788888889999999999987665311 1 113469999999999654333 699999
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|+|++||.+|||||||||||||+++|.|+++ ++|+|.+||.|+.+.+. ..+|+ +++||+|++.+|+ .|
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~---------~~lR~-~i~iVpQdp~LF~-gT 1325 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL---------TDLRR-VLSIIPQSPVLFS-GT 1325 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCH---------HHHHh-hcEEECCCCeeeC-cc
Confidence 9999999999999999999999999999999 89999999998765432 23665 8999999999998 69
Q ss_pred hhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh-
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK- 239 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE- 239 (382)
+++|+... ....++++.++++.+++.+++. +.| ..||||||||++|||||+++|+||||||
T Consensus 1326 Ir~NL~~~------~~~sdeei~~al~~a~l~~~I~-~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEA 1398 (1495)
T PLN03232 1326 VRFNIDPF------SEHNDADLWEALERAHIKDVID-RNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEA 1398 (1495)
T ss_pred HHHHcCCC------CCCCHHHHHHHHHHcCCHHHHH-hCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999532 1234566778888888766543 333 3599999999999999999999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+||+++...|++.|++.. +++|+|+||| +++++.. +|+|++|++ +..|++++.+
T Consensus 1399 TSaLD~~Te~~Iq~~L~~~~----~~~TvI~IAH--Rl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1399 TASVDVRTDSLIQRTIREEF----KSCTMLVIAH--RLNTIID-CDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEEeC--CHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999863 5899999999 6766876 788888876 5566666665
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=319.26 Aligned_cols=215 Identities=14% Similarity=0.122 Sum_probs=167.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh---cc---cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL---SR---SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~---~~---~G~I~i~G~~i~~~ 138 (382)
++++++|+++.|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+. ++ +|+|.++|+++...
T Consensus 2 ~~l~~~~~~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGDF--H----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECCE--e----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 478899999999643 2 599999999999999999999999999999999973 42 89999999876421
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---ccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~~~ 213 (382)
. .....+++ .++|+||++.+|+ .|+.+|+.+......... ...+.+.++++.+++.+. ..++++.+
T Consensus 76 ~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 146 (250)
T PRK14245 76 G-------VQVDELRK-NVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFA 146 (250)
T ss_pred c-------ccHHHHhh-heEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCccc
Confidence 1 01122343 7999999998887 699999975432111001 112345677888887532 23478999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +++|||+||||++. +.++||+++++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiiivtH~~~~--~~~~~d~v~~l~~ 220 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL---K-KDYTIVIVTHNMQQ--AARVSDKTAFFYM 220 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHhhCCEEEEEEC
Confidence 99999999999999999999999999 99999999999999998 2 36899999996555 8889999999976
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+.+++++
T Consensus 221 G~~~~~~~~~~~~ 233 (250)
T PRK14245 221 GEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEECCHHHHh
Confidence 4444555554
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=348.38 Aligned_cols=223 Identities=13% Similarity=0.065 Sum_probs=175.2
Q ss_pred cCchhHHHHHhhhcccC---------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 63 PDGLNELRHKFLSYRSG---------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~---------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
..++++++|+++.|+.+ ... +|+++||+|++||+++|+||||||||||+|+|+|+++++|+|+++|+
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~ 347 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNV----VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQ 347 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccce----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCE
Confidence 34589999999999631 222 59999999999999999999999999999999999888999999998
Q ss_pred cCCCcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc--C-ccccccccccCccccccccccc
Q 016817 134 SSGNSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE--G-VHHNQRCLRSDDCALMKNDAEI 208 (382)
Q Consensus 134 ~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~--~-~~~~~~~~~~l~~~~L~~~~~~ 208 (382)
++...+ ......+|. .+||+||++ .+++.+|+.+|+.+....... . ...++++.++++.+++.+...+
T Consensus 348 ~i~~~~------~~~~~~~~~-~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 420 (529)
T PRK15134 348 PLHNLN------RRQLLPVRH-RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH 420 (529)
T ss_pred Eccccc------hhhHHHhhh-ceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh
Confidence 764321 111112343 799999997 478889999999764321110 1 1122456778999999632234
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||++
T Consensus 421 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvi~vsHd~~~--~~~~~d~i 496 (529)
T PRK15134 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQ--QKHQLAYLFISHDLHV--VRALCHQV 496 (529)
T ss_pred cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHH--HhhCCEEEEEeCCHHH--HHHhcCeE
Confidence 8999999999999999999999999999999 999999999999999983 3358999999996666 88899999
Q ss_pred hhhhh---ccccccccee
Q 016817 286 KICEY---LGVSEISGVY 300 (382)
Q Consensus 286 ~ll~~---~~~~~~~~v~ 300 (382)
++|++ +..+++.+++
T Consensus 497 ~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 99976 3344444444
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=357.44 Aligned_cols=239 Identities=16% Similarity=0.150 Sum_probs=189.1
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh----h----cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA----L----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
++..|+.+++.....+..+..+.+|+.++++.++.. . ....+.|+++||+|+|+++. + +|+|+||++
T Consensus 284 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~----iL~~inl~i 358 (588)
T PRK13657 284 LLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR-Q----GVEDVSFEA 358 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCC-c----eecceeEEE
Confidence 467788888888888888888888888777653321 0 01123699999999997432 2 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|++++|+||||||||||+|+|+|+++ ++|+|.+||+++.+... ..+|+ .|+|++|++.+|+ .|+++
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~---------~~~r~-~i~~v~Q~~~lf~-~Ti~~ 427 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR---------ASLRR-NIAVVFQDAGLFN-RSIED 427 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH---------HHHHh-heEEEecCccccc-ccHHH
Confidence 9999999999999999999999999999 89999999998764432 22555 8999999999997 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccc------c----cccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE------I----DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~------~----~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+.+. .+...++++.++++.+++.+.+. | .....||||||||++|||||+++|++||||| +|
T Consensus 428 Ni~~~-----~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~L 502 (588)
T PRK13657 428 NIRVG-----RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSAL 502 (588)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 99542 22234456667777777654332 0 2233599999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+++.|.++. +++|+|+|||++.. + +.+|+|++|++
T Consensus 503 D~~t~~~i~~~l~~~~----~~~tvIiitHr~~~--~-~~~D~ii~l~~ 544 (588)
T PRK13657 503 DVETEAKVKAALDELM----KGRTTFIIAHRLST--V-RNADRILVFDN 544 (588)
T ss_pred CHHHHHHHHHHHHHHh----cCCEEEEEEecHHH--H-HhCCEEEEEEC
Confidence 9999999999998862 47999999995543 5 46888888876
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=321.79 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=163.7
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
+.+++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++
T Consensus 17 ~~~~~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKR------AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred CCCceEEEEEEEEEeCCce------eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 3456899999999996432 5999999999999999999999999999999999863 589999999876
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC--ccccccccccCccccccc---cccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKN---DAEIDD 210 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~---~~~~~~ 210 (382)
.... .....+++ .++|++|++.+|+ .|+.+|+.......... ...++.+.++++.+++.. ...+++
T Consensus 91 ~~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 161 (268)
T PRK14248 91 LDSN-------INVVNLRR-EIGMVFQKPNPFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSS 161 (268)
T ss_pred cccc-------ccHHHHhc-cEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC
Confidence 4211 11112343 7999999998888 59999997542111100 011233455667777642 123488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. .+.|||++|||++. +..+||++++
T Consensus 162 ~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~--~~~~~d~v~~ 235 (268)
T PRK14248 162 ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK----EEYSIIIVTHNMQQ--ALRVSDRTAF 235 (268)
T ss_pred cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh----cCCEEEEEEeCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 999999999999999982 35899999996555 8889999999
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 236 l~~ 238 (268)
T PRK14248 236 FLN 238 (268)
T ss_pred EEC
Confidence 976
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=331.43 Aligned_cols=219 Identities=15% Similarity=0.151 Sum_probs=173.1
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++|+++|++++|..+..+ +|+|+||+|++||++||+||||||||||+++|+|+.+ ++|+|.++|+++.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~----~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKH----VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred cCceEEEEeeEEEecCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 35689999999999643323 5999999999999999999999999999999999985 3899999999764
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcccc----ccccccCcccccc----ccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHN----QRCLRSDDCALMK----NDAEI 208 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~----~~~~~~l~~~~L~----~~~~~ 208 (382)
... .....+|+ .++|+||++.+|+ .|+++|+.+... + .+...+ +.+.++++.+++. ..+.
T Consensus 153 ~~~-------~~~~~lr~-~i~~v~q~~~~~~-~ti~eNi~~~~~-~-~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~- 220 (329)
T PRK14257 153 SKK-------ISSLELRT-RIGMVFQKPTPFE-MSIFDNVAYGPR-N-NGINDRKILEKIVEKSLKSAALWDEVKDDLD- 220 (329)
T ss_pred ccc-------cchHhhhc-cEEEEecCCccCC-CcHHHHHHhHHH-h-cCCChHHHHHHHHHHHHHHcCCcchhhhhhh-
Confidence 211 11112454 8999999999986 899999975431 1 111111 1245566766663 2333
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|+|||||| +||+.+...+.+.|+++. +++|||+|||+++. +.++||+|
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~----~~~Tii~iTH~l~~--i~~~~Dri 294 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK----KKYSIIIVTHSMAQ--AQRISDET 294 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHH--HHHhCCEE
Confidence 7889999999999999999999999999999 999999999999999873 36899999995555 88889999
Q ss_pred hhhhh---cccccccceeeEE
Q 016817 286 KICEY---LGVSEISGVYDIV 303 (382)
Q Consensus 286 ~ll~~---~~~~~~~~v~~~~ 303 (382)
++|++ +..+++.++++.|
T Consensus 295 ivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 295 VFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEEECCEEEEeCCHHHHhcCC
Confidence 99987 5667777777543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=353.47 Aligned_cols=241 Identities=15% Similarity=0.108 Sum_probs=191.6
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCc
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPP 97 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~ 97 (382)
+++..|+..+......+..+..+.+|+.++++.++... +...+.++++|++|+|+.++.+ +|+|+||++++
T Consensus 268 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~~~~~i~~ 343 (544)
T TIGR01842 268 GRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKP----TLRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCcc----ccccceEEEcC
Confidence 46778999999999999999999999999987654311 1123469999999999754333 59999999999
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
|+.++|+||||||||||+++|+|+++ ++|+|.++|.++.+... ..+|+ .++|++|++.+|+ .|+++|+
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~---------~~~~~-~i~~v~q~~~lf~-~ti~~Ni 412 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR---------ETFGK-HIGYLPQDVELFP-GTVAENI 412 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH---------HHHhh-heEEecCCccccc-ccHHHHH
Confidence 99999999999999999999999999 89999999997654321 22454 8999999999998 5999999
Q ss_pred HHHHhhhhcCccccccccccCccccccc-----------cccccccCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKN-----------DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
.... ....++++.++++.+++.+ ... .....||||||||++|||||+++|++||||| +||
T Consensus 413 ~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD 486 (544)
T TIGR01842 413 ARFG-----ENADPEKIIEAAKLAGVHELILRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486 (544)
T ss_pred hccC-----CCCCHHHHHHHHHHhChHHHHHhCccccccccC-CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccC
Confidence 6321 1123334444455444432 222 4456799999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.++..+.+.|+++ ..+|+|+|+|||++. .+. .||+++++++
T Consensus 487 ~~~~~~i~~~l~~~---~~~~~tvi~ith~~~--~~~-~~d~i~~l~~ 528 (544)
T TIGR01842 487 EEGEQALANAIKAL---KARGITVVVITHRPS--LLG-CVDKILVLQD 528 (544)
T ss_pred HHHHHHHHHHHHHH---hhCCCEEEEEeCCHH--HHH-hCCEEEEEEC
Confidence 99999999999987 335799999999554 354 6888888876
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=312.69 Aligned_cols=206 Identities=18% Similarity=0.160 Sum_probs=166.5
Q ss_pred hHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++|+++.|+.+. .. +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 2 l~~~~l~~~~~~~~~~~~----il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~---- 73 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQ----VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS---- 73 (220)
T ss_pred EEEEEEEEEccCCCccee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcC----
Confidence 56789999996432 22 5999999999999999999999999999999999999 8999999998654221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc---ccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH---HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.......++ .++|+||++.+|+.+|+.+|+.+..... .... ..+.+.++++.+|+.+... +++.+|||||||
T Consensus 74 --~~~~~~~~~-~i~~~~q~~~~~~~~t~~~n~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~q 148 (220)
T TIGR02982 74 --EKELVQLRR-NIGYIFQAHNLLGFLTARQNVQMALELQ-PNLSYQEARERARAMLEAVGLGDHLD-YYPHNLSGGQKQ 148 (220)
T ss_pred --HhHHHHHHh-heEEEcCChhhcCCCCHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHH
Confidence 111112343 8999999999998899999997643211 1111 1235677889999986655 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||||+.+|++||||| +||+.++..+.+.|+++. ++.++|||++|||++. . ++||+++++++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sh~~~~--~-~~~d~v~~l~~ 216 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA--REQGCTILIVTHDNRI--L-DVADRIVHMED 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--H-hhCCEEEEEEC
Confidence 9999999999999999999 999999999999999983 3358999999997653 4 68999888864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=355.01 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=195.5
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhh------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++..|+.+++.....+..+..+.+|+.++++.++.. .+...+.|+++|++|+|+.++.+ +|+|+||+++
T Consensus 264 ~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~----~l~~i~~~i~ 339 (569)
T PRK10789 264 GLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHP----ALENVNFTLK 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCc----cccCeeEEEC
Confidence 4567899999999999999999999999998765431 11123468999999999754333 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+|++++|+||||||||||+++|+|+++ ++|+|.++|+++.+.. ...+|+ .++|++|++.+|+ .|+++|
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~---------~~~~~~-~i~~v~q~~~lf~-~ti~~N 408 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ---------LDSWRS-RLAVVSQTPFLFS-DTVANN 408 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCC---------HHHHHh-heEEEccCCeecc-ccHHHH
Confidence 999999999999999999999999999 8999999999765332 122555 8999999999998 699999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
+... .....++.+.++++.+++.+.+. +.....||||||||++|||||+++|++||||| +||
T Consensus 409 i~~~-----~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 409 IALG-----RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred HhcC-----CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 9542 12223445555666666543322 13345699999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
+.++..+.+.|+++. +|+|+|+|||+++ .+. .+|+++++++ +..++.+++
T Consensus 484 ~~~~~~i~~~l~~~~----~~~tii~itH~~~--~~~-~~d~i~~l~~G~i~~~g~~~~l 536 (569)
T PRK10789 484 GRTEHQILHNLRQWG----EGRTVIISAHRLS--ALT-EASEILVMQHGHIAQRGNHDQL 536 (569)
T ss_pred HHHHHHHHHHHHHHh----CCCEEEEEecchh--HHH-cCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999872 5899999999554 365 5788888875 344443333
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=305.97 Aligned_cols=205 Identities=14% Similarity=0.175 Sum_probs=178.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
++++++|+|+|++.. |++|+||++++|+++|++|||||||||++|+|.|++. ++|+|.++|.++...
T Consensus 2 ~L~ie~vtK~Fg~k~------av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~------ 69 (300)
T COG4152 2 ALEIEGVTKSFGDKK------AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE------ 69 (300)
T ss_pred ceEEecchhccCcee------eecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh------
Confidence 578999999997654 7999999999999999999999999999999999999 899999999865311
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+. +|||+|.+-.|++.+||.|.+.+++...+. ......++..+|+++++..... +++.+||.|++|++.
T Consensus 70 -------~~~-rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~-~kIk~LSKGnqQKIQ 140 (300)
T COG4152 70 -------IKN-RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT-KKIKELSKGNQQKIQ 140 (300)
T ss_pred -------hhh-hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccccc-chHHHhhhhhhHHHH
Confidence 233 899999999999999999999887754432 1223356778999999987765 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+-.+++++|+++|||| ||||.+.+.+.+.+.++ ++.|.|||++|| +++.+.++||++++++. +..|+.
T Consensus 141 fisaviHePeLlILDEPFSGLDPVN~elLk~~I~~l---k~~GatIifSsH--~Me~vEeLCD~llmL~kG~~V~~G~v 214 (300)
T COG4152 141 FISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL---KEEGATIIFSSH--RMEHVEELCDRLLMLKKGQTVLYGTV 214 (300)
T ss_pred HHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH---HhcCCEEEEecc--hHHHHHHHhhhhheecCCceEEeccH
Confidence 9999999999999999 99999999999999998 678999999999 55559999999999987 545443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=317.96 Aligned_cols=216 Identities=14% Similarity=0.077 Sum_probs=168.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
.++++++|++++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGEK--Q----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECCe--e----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 3578899999999642 2 5999999999999999999999999999999999975 48999999987642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccc---cccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKN---DAEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~---~~~~~~~~ 212 (382)
.. ......++ .++|+||++.+|+ .|+.+|+.+....... . ....+++.++++.+++.+ ...++++.
T Consensus 76 ~~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 146 (251)
T PRK14270 76 KD-------VDVVELRK-RVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL 146 (251)
T ss_pred cc-------ccHHHHHh-heEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcc
Confidence 11 11112343 7999999999888 8999999754321111 0 011234556778887642 12348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +..+||++++++
T Consensus 147 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~---~-~~tiiivsH~~~~--~~~~~d~v~~l~ 220 (251)
T PRK14270 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK---K-EYTIVIVTHNMQQ--ASRVSDYTAFFL 220 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---h-CCeEEEEEcCHHH--HHHhcCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 2 5899999996555 888999999998
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ +..+++.+++
T Consensus 221 ~G~i~~~~~~~~~~ 234 (251)
T PRK14270 221 MGDLIEFNKTEKIF 234 (251)
T ss_pred CCeEEEeCCHHHHh
Confidence 7 3444554454
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=313.94 Aligned_cols=201 Identities=17% Similarity=0.089 Sum_probs=165.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|+.. + +++++||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 1 l~~~~l~~~~~~~--~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----- 69 (232)
T cd03300 1 IELENVSKFYGGF--V----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP----- 69 (232)
T ss_pred CEEEeEEEEeCCe--e----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-----
Confidence 3578999999643 2 5999999999999999999999999999999999999 89999999987643211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|++|++.+|+.+|+.+|+.+...... ......+.+.++++.+|+.+... +.+.+|||||+||++|
T Consensus 70 ------~~-~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~l 141 (232)
T cd03300 70 ------HK-RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-RKPSQLSGGQQQRVAI 141 (232)
T ss_pred ------hh-cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHH
Confidence 12 379999999999988899999965432111 01112345667888999986655 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++||++.. +..+||+++++++
T Consensus 142 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~~~tiii~sh~~~~--~~~~~d~i~~l~~ 206 (232)
T cd03300 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ--KELGITFVFVTHDQEE--ALTMSDRIAVMNK 206 (232)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 999999999999999 999999999999999983 3348999999995554 8889999998876
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=317.55 Aligned_cols=204 Identities=17% Similarity=0.124 Sum_probs=161.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+++++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGDFQ------ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECCce------eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 578999999996432 5999999999999999999999999999999999875 3899999998764210
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC--ccccccccccCccccccc---cccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKN---DAEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~---~~~~~~~~~L 214 (382)
.....+|+ .++|++|++.+|+ .|+.+|+.+........ ....+.+.++++.+++.+ ...++++.+|
T Consensus 77 -------~~~~~~~~-~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 147 (250)
T PRK14240 77 -------IDVNQLRK-RVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL 147 (250)
T ss_pred -------cchHHHhc-cEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCC
Confidence 01112344 7999999998888 89999997643211110 011234555666776632 1224889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|||+||||++. +..+||+++++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~sH~~~~--~~~~~d~v~~l~~ 220 (250)
T PRK14240 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL---K-KDYTIVIVTHNMQQ--ASRISDKTAFFLN 220 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEEeCHHH--HHhhCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 3 37899999996554 8889999999876
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=322.81 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=169.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
.|+++|++++|+.+... +|+|+||+|++||+++|+||||||||||+++|+|+++++|+|+++|.++....
T Consensus 2 ~i~~~nls~~~~~~~~~----~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~------ 71 (275)
T cd03289 2 QMTVKDLTAKYTEGGNA----VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVP------ 71 (275)
T ss_pred eEEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCC------
Confidence 36789999999643322 59999999999999999999999999999999999988899999998764221
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCC-----------C
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------S 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------L 214 (382)
...+|+ .++|+||++.+|+ .|+++|+.... ....+++.++++.+||.+... ++|.+ |
T Consensus 72 ---~~~lr~-~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~~~~~~~l~~~gL~~~~~-~~p~~l~~~~~~~g~~L 139 (275)
T cd03289 72 ---LQKWRK-AFGVIPQKVFIFS-GTFRKNLDPYG------KWSDEEIWKVAEEVGLKSVIE-QFPGQLDFVLVDGGCVL 139 (275)
T ss_pred ---HHHHhh-hEEEECCCcccch-hhHHHHhhhcc------CCCHHHHHHHHHHcCCHHHHH-hCcccccceecCCCCCC
Confidence 122454 8999999999998 69999995321 112345677888899987655 88877 9
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
|||||||++|||||+.+|+|||||| +||+.++..+.+.|+++ . .++|||+|||+++. +.. ||+|++|++
T Consensus 140 S~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~---~-~~~tii~isH~~~~--i~~-~dri~vl~~G 212 (275)
T cd03289 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA---F-ADCTVILSEHRIEA--MLE-CQRFLVIEEN 212 (275)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh---c-CCCEEEEEECCHHH--HHh-CCEEEEecCC
Confidence 9999999999999999999999999 99999999999999986 2 47999999996544 764 899999976
Q ss_pred --cccccccceee
Q 016817 291 --LGVSEISGVYD 301 (382)
Q Consensus 291 --~~~~~~~~v~~ 301 (382)
+..+++.+++.
T Consensus 213 ~i~~~g~~~~l~~ 225 (275)
T cd03289 213 KVRQYDSIQKLLN 225 (275)
T ss_pred eEeecCCHHHHhh
Confidence 55566666653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=317.36 Aligned_cols=205 Identities=15% Similarity=0.091 Sum_probs=162.8
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~ 138 (382)
++++++|++++|+.. + +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~--~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGNY--E----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECCe--e----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 368899999999642 2 5999999999999999999999999999999999985 499999999865321
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCccccccc---cccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKN---DAEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~---~~~~~~~~~ 213 (382)
. .....+++ .++|++|++.+|+ .|+.+|+.+......... ...+.+.++++.+++.. ...++.+.+
T Consensus 77 ~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 147 (251)
T PRK14251 77 K-------MDLVELRK-EVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQA 147 (251)
T ss_pred c-------chHHHhhc-cEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhh
Confidence 0 11122343 7999999998887 799999965421111111 11234556777778741 122488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|||+||||++. +.++||+++++++
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~--~~~~~d~i~~l~~ 221 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK----HQYTFIMVTHNLQQ--AGRISDQTAFLMN 221 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH----cCCeEEEEECCHHH--HHhhcCEEEEEEC
Confidence 99999999999999999999999999 999999999999999972 36899999996555 8889999999976
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=386.00 Aligned_cols=251 Identities=15% Similarity=0.146 Sum_probs=203.3
Q ss_pred eeccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------c----CcCchhHHHHHhhhcccCCeeeecCCccc
Q 016817 22 WWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------I----APDGLNELRHKFLSYRSGDFWIPIGGIQK 90 (382)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~i~i~nvs~~y~~~~~~v~~~vL~~ 90 (382)
...+..++..+......++....+.+|+.++.+.+++.. + +..+.|+++||+++|.++..+ +|+|
T Consensus 1182 ~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~----VL~~ 1257 (1622)
T PLN03130 1182 ALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPP----VLHG 1257 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCc----eecc
Confidence 344556677777777778888999999999887664310 0 123579999999999754333 5999
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCCh
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~ 169 (382)
+||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.|+.+.+. ..+|+ +|++|+||+.+|+
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l---------~~LR~-~IsiVpQdp~LF~- 1326 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL---------MDLRK-VLGIIPQAPVLFS- 1326 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCH---------HHHHh-ccEEECCCCcccc-
Confidence 999999999999999999999999999999999 89999999998865432 23665 8999999999998
Q ss_pred hhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHH
Q 016817 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKAL 238 (382)
Q Consensus 170 ~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLD 238 (382)
.|+++|+... ....++++.++++.+++.+++. +.| ..||||||||++|||||+++|+|||||
T Consensus 1327 GTIreNLd~~------~~~tdeei~~Al~~a~l~~~I~-~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1327 GTVRFNLDPF------NEHNDADLWESLERAHLKDVIR-RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred ccHHHHhCcC------CCCCHHHHHHHHHHcCcHHHHH-hCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 7999999532 1234567788888888776544 333 369999999999999999999999999
Q ss_pred h---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 239 K---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 239 E---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
| +||+++...|++.|++.. +++|+|+|+| +++++.. ||+|++|++ +..|++++++.
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~----~~~TvI~IAH--RL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEF----KSCTMLIIAH--RLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC----CCCEEEEEeC--ChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 9 999999999999999873 5899999999 7776876 688888876 56677766664
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=320.05 Aligned_cols=220 Identities=15% Similarity=0.091 Sum_probs=170.9
Q ss_pred hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEee
Q 016817 60 LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQT 133 (382)
Q Consensus 60 ~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~ 133 (382)
++....+|+++|++++|+.. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+
T Consensus 14 ~~~~~~~l~~~nl~~~~~~~--~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYGKK--E----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI 87 (267)
T ss_pred cCCCCeEEEEeeEEEEECCe--e----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCE
Confidence 34456689999999999542 2 6999999999999999999999999999999999984 5999999998
Q ss_pred cCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCccccccc---cccc
Q 016817 134 SSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKN---DAEI 208 (382)
Q Consensus 134 ~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~---~~~~ 208 (382)
++.... .....+++ .++|+||++.+|+ .|+.+|+.......+... ...+++.++++.+++.+ ...+
T Consensus 88 ~~~~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 88 DINRKE-------INVYEMRK-HIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred Eccccc-------CChHHHhc-ceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 763211 01112343 7999999998888 699999976432111100 11234556677777742 1234
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||+||++|||||+.+|++||||| +||+.++..+.++|+++ . ++.|||+||||++. +..+||++
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiii~tH~~~~--~~~~~d~i 232 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL---K-KNYTIIIVTHNMQQ--AARASDYT 232 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---h-cCCEEEEEecCHHH--HHHhcCEE
Confidence 8899999999999999999999999999999 99999999999999998 3 36899999996655 88899999
Q ss_pred hhhhh---ccccccccee
Q 016817 286 KICEY---LGVSEISGVY 300 (382)
Q Consensus 286 ~ll~~---~~~~~~~~v~ 300 (382)
+++++ +..+++++++
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 233 AFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 99986 3444444444
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=312.22 Aligned_cols=188 Identities=13% Similarity=0.094 Sum_probs=153.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceee-EeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV-YDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~-Q~~ 164 (382)
+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.... ..+++ .++|++ |++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~----------~~~~~-~i~~~~~~~~ 104 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR----------KKFLR-RIGVVFGQKT 104 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc----------hhhcc-cEEEEcCCcc
Confidence 6999999999999999999999999999999999998 8999999998542110 11333 799998 556
Q ss_pred CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 165 RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
.+++.+|+.+|+.......... ....+.+.++++.+++.+..+ +++.+||||||||++|||||+.+|++||||| +
T Consensus 105 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 105 QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 7888899999987543211111 111234566788889986554 8899999999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.++..+.+.|+++. ++.+.|||+||||++. +..+||+++++++
T Consensus 184 LD~~~~~~l~~~l~~~~--~~~~~tiiivsH~~~~--~~~~~d~i~~l~~ 229 (236)
T cd03267 184 LDVVAQENIRNFLKEYN--RERGTTVLLTSHYMKD--IEALARRVLVIDK 229 (236)
T ss_pred CCHHHHHHHHHHHHHHH--hcCCCEEEEEecCHHH--HHHhCCEEEEEeC
Confidence 99999999999999983 3458999999996655 8889999988865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=316.99 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=159.8
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
+++||++. . +|+|+||+|++|++++|+||||||||||+++|+|+++++|+|.++|+++.... .
T Consensus 2 ~~~~l~~~----~------~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~------~- 64 (248)
T PRK03695 2 QLNDVAVS----T------RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWS------A- 64 (248)
T ss_pred cccccchh----c------eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCC------H-
Confidence 56778775 1 49999999999999999999999999999999999878899999998764221 1
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra 227 (382)
...++ .++|+||++.+++.+|+.+|+..............+++.++++.+++.+... +++.+||||||||++||||
T Consensus 65 --~~~~~-~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~a 140 (248)
T PRK03695 65 --AELAR-HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGEWQRVRLAAV 140 (248)
T ss_pred --HHHhh-heEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHH
Confidence 11233 6899999988777899999997542110001111235677888999986554 8999999999999999999
Q ss_pred ehh-------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 228 VSN-------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 228 L~~-------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+. +|++||||| +||+.++..+.++|+++ .++|.|||++|||++. +.++||+++++++
T Consensus 141 l~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~---~~~~~tvi~~sH~~~~--~~~~~d~i~~l~~ 208 (248)
T PRK03695 141 VLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL---CQQGIAVVMSSHDLNH--TLRHADRVWLLKQ 208 (248)
T ss_pred HhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 997 679999999 99999999999999998 3358999999996555 8889999999976
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=318.58 Aligned_cols=205 Identities=16% Similarity=0.104 Sum_probs=161.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
.++|+++||+++|+.. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 8 ~~~l~i~~v~~~~~~~--~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGSF--L----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECCE--E----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 3479999999999642 2 5999999999999999999999999999999999974 48999999986532
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccc---cccccccCCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN---DAEIDDLKSS 214 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~L 214 (382)
.. .....+++ .++|++|++.+|+ .|+.+|+.+............+++.++++.+++.+ ...++.+.+|
T Consensus 82 ~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 152 (264)
T PRK14243 82 PD-------VDPVEVRR-RIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSL 152 (264)
T ss_pred cc-------cChHHHhh-hEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccC
Confidence 10 01112344 7999999998888 59999996543211111111233445566666632 1234789999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||++|||++. +..+||++++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~-~~tvi~vtH~~~~--~~~~~d~v~~l~ 224 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK---E-QYTIIIVTHNMQQ--AARVSDMTAFFN 224 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---c-CCEEEEEecCHHH--HHHhCCEEEEEe
Confidence 9999999999999999999999999 999999999999999983 2 5899999996555 999999999997
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=315.39 Aligned_cols=215 Identities=15% Similarity=0.109 Sum_probs=165.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
..+++++|++++|+. .. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~--~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECC--ee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 457899999999964 22 5999999999999999999999999999999999864 28999999986642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCcccccc----cccccccc
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCALMK----NDAEIDDL 211 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~L~----~~~~~~~~ 211 (382)
.. .....+++ .++|++|++.+|+ .|+.+|+.+.......... .++.+.++++.+++. +.. ++.+
T Consensus 77 ~~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~ 146 (252)
T PRK14255 77 PN-------EDVVQLRK-QVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHL-HESA 146 (252)
T ss_pred cc-------ccHHHhcC-eEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHH-hcCc
Confidence 11 11112343 7999999998888 7999999754211110111 112334455666553 233 4889
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +.++||+++++
T Consensus 147 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~vsH~~~~--~~~~~d~i~~l 220 (252)
T PRK14255 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR---D-QYTIILVTHSMHQ--ASRISDKTAFF 220 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH---h-CCEEEEEECCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 2 5899999996655 88899999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..+++.+++
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 221 LTGNLIEFADTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 87 3444554555
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=351.70 Aligned_cols=241 Identities=16% Similarity=0.109 Sum_probs=191.5
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhh-hh-------c-CcCchhHHHHHhhhcccCC-eeeecCCcccCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-AL-------I-APDGLNELRHKFLSYRSGD-FWIPIGGIQKGG 92 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~-~~~~~i~i~nvs~~y~~~~-~~v~~~vL~~is 92 (382)
.++..|+..+......+..+..+.+|+.++++.++. +. . +..+.|+++||+++|+.+. .+ +|+|+|
T Consensus 285 ~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~----iL~~in 360 (576)
T TIGR02204 285 VMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQP----ALDGLN 360 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCc----ccccee
Confidence 356789999999999999999999999999876542 10 0 1123589999999997532 22 599999
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|++++||.++|+||||||||||+++|+|+++ .+|+|.+||.++.+.. ...+|+ .++|++|++.+|+ .|
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~---------~~~~~~-~i~~~~Q~~~lf~-~T 429 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD---------PAELRA-RMALVPQDPVLFA-AS 429 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC---------HHHHHH-hceEEccCCcccc-cc
Confidence 9999999999999999999999999999999 8999999999765332 122554 8999999999998 79
Q ss_pred hhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh--
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
++||+... .+...++++.++++.+++.+.+. ......||||||||++||||++.+|++|||||
T Consensus 430 i~~Ni~~~-----~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt 504 (576)
T TIGR02204 430 VMENIRYG-----RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504 (576)
T ss_pred HHHHHhcC-----CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc
Confidence 99999532 22223456666777766653322 02234599999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||+.+++.+++.|+++. .++|+|+|||++.. . ..+|+++.+++
T Consensus 505 s~lD~~~~~~i~~~l~~~~----~~~t~IiitH~~~~--~-~~~d~vi~l~~ 549 (576)
T TIGR02204 505 SALDAESEQLVQQALETLM----KGRTTLIIAHRLAT--V-LKADRIVVMDQ 549 (576)
T ss_pred cccCHHHHHHHHHHHHHHh----CCCEEEEEecchHH--H-HhCCEEEEEEC
Confidence 999999999999999872 47999999995543 5 46888888866
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=315.68 Aligned_cols=204 Identities=14% Similarity=0.089 Sum_probs=162.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~------~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGEKK------AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCCce------eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 688999999996432 5999999999999999999999999999999999985 5899999998653210
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---ccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~~~L 214 (382)
.....+++ .++|+||++.+|+ .|+.+|+.+......... ..++.+.++++.+++.+. ..++++.+|
T Consensus 77 -------~~~~~~~~-~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14262 77 -------LDVTEYRK-KVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRL 147 (250)
T ss_pred -------hhHHHhhh-hEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhc
Confidence 11112343 7999999998888 899999975432111111 112335566777777532 234889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||++|||||+.+|++||||| +||+.++..+.+.|+++ . +++|||++|||++. +..+||+++++++
T Consensus 148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tili~sH~~~~--~~~~~d~i~~l~~ 220 (250)
T PRK14262 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL---S-ENYTIVIVTHNIGQ--AIRIADYIAFMYR 220 (250)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH---h-cCcEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 3 36899999996554 8889999999976
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=315.16 Aligned_cols=214 Identities=15% Similarity=0.121 Sum_probs=164.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~~ 139 (382)
+++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ + +|+|.++|.++....
T Consensus 4 ~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGDK--Q----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECCE--E----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 67889999999632 2 5999999999999999999999999999999999986 3 799999998764211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCcccccc----ccccccccCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCALMK----NDAEIDDLKS 213 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~L~----~~~~~~~~~~ 213 (382)
. ....+|. .++|++|++.+|+..|+.+|+............ ..+.+.++++.+++. +.. ++++.+
T Consensus 78 ~-------~~~~~~~-~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 148 (252)
T PRK14272 78 V-------DPVAMRR-RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL-KTPATG 148 (252)
T ss_pred c-------CHHHhhc-eeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhh-cCCccc
Confidence 0 0112343 799999999999889999999654311110000 112233344445442 233 488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||++|||||+.+|++||||| +||+.++..+.+.|+++ + +++|||++|||++. +..+||++++|++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~sH~~~~--~~~~~d~i~~l~~ 222 (252)
T PRK14272 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL---K-KVTTIIIVTHNMHQ--AARVSDTTSFFLV 222 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999 99999999999999997 3 36899999996655 8889999999976
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+++++++
T Consensus 223 G~i~~~~~~~~~~ 235 (252)
T PRK14272 223 GDLVEHGPTDQLF 235 (252)
T ss_pred CEEEEeCCHHHHH
Confidence 3344444443
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=318.48 Aligned_cols=199 Identities=15% Similarity=0.100 Sum_probs=163.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~~------vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---------- 66 (251)
T PRK09544 3 SLVSLENVSVSFGQRR------VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---------- 66 (251)
T ss_pred cEEEEeceEEEECCce------EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----------
Confidence 4788999999996432 5999999999999999999999999999999999998 8999998763
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChh--hhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYN--RVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~--tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..++|+||++.+++.+ ++.+++... .+ ...+++.++++.+++.+... +++.+||||||||
T Consensus 67 -----------~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~~-~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qr 128 (251)
T PRK09544 67 -----------LRIGYVPQKLYLDTTLPLTVNRFLRLR-----PG-TKKEDILPALKRVQAGHLID-APMQKLSGGETQR 128 (251)
T ss_pred -----------cCEEEeccccccccccChhHHHHHhcc-----cc-ccHHHHHHHHHHcCChHHHh-CChhhCCHHHHHH
Confidence 2699999998777653 555554211 11 12345667888999986654 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--cccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--LGVSEI 296 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--~~~~~~ 296 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++ +..+++
T Consensus 129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~g~tiiivsH~~~~--i~~~~d~i~~l~~~i~~~g~~ 204 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR--RELDCAVLMVSHDLHL--VMAKTDEVLCLNHHICCSGTP 204 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEECCceEeeCCH
Confidence 999999999999999999 999999999999999973 3348999999996555 8889999999976 344444
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
+++++
T Consensus 205 ~~~~~ 209 (251)
T PRK09544 205 EVVSL 209 (251)
T ss_pred HHHhC
Confidence 44543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=315.88 Aligned_cols=216 Identities=16% Similarity=0.141 Sum_probs=166.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~ 137 (382)
.++++++|++++|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ + +|+|+++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~------il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQ------VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred CceEEEEEEEEEECCee------EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc
Confidence 34788999999996432 5999999999999999999999999999999999998 5 5999999986532
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCccccccc---cccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCALMKN---DAEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~L~~---~~~~~~~~ 212 (382)
.. .....+|+ .++|+||++.+|+ .|+.+|+.+.......... ..+.+.++++.+++.+ ...++++.
T Consensus 76 ~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 146 (251)
T PRK14249 76 PN-------LDVVNLRK-RVGMVFQQPNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL 146 (251)
T ss_pred cc-------cChHHhhc-eEEEEecCCccCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcc
Confidence 11 01112343 8999999999888 5999999754321111111 1123444566666542 12348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ . ++.|||+||||++. +..+||++++++
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tilivsh~~~~--~~~~~d~i~~l~ 220 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL---K-QNYTIAIVTHNMQQ--AARASDWTGFLL 220 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHhhCCEEEEEe
Confidence 999999999999999999999999999 99999999999999987 3 47899999996555 889999999997
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ ...+++.+++
T Consensus 221 ~G~i~~~~~~~~~~ 234 (251)
T PRK14249 221 TGDLVEYGRTGEIF 234 (251)
T ss_pred CCeEEEeCCHHHHH
Confidence 6 3334444444
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=319.95 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=162.9
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
++.++|+++|++++|+.. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++
T Consensus 16 ~~~~~l~~~nl~~~~~~~--~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGF--L----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred CCCceEEEeeEEEEeCCe--E----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 456699999999999642 2 5999999999999999999999999999999999975 289999999876
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccc----cccccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK----NDAEIDDL 211 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~ 211 (382)
.... .....+|+ .++|+||++.+|+ .|+.+|+.............++.+.++++.+++. +.. ++++
T Consensus 90 ~~~~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~ 159 (274)
T PRK14265 90 YDSQ-------INSVKLRR-QVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKL-KEKG 159 (274)
T ss_pred cccc-------chhHHHhh-cEEEEccCCcccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHh-cCCc
Confidence 4211 01112343 8999999998887 5999999754321100001123344556666653 233 4889
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ . ++.|||++|||++. +.++||++++|
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~---~-~~~tiii~sH~~~~--~~~~~d~i~~l 233 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL---K-EQYTIIMVTHNMQQ--ASRVADWTAFF 233 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3 36899999996655 88999999999
Q ss_pred h
Q 016817 289 E 289 (382)
Q Consensus 289 ~ 289 (382)
+
T Consensus 234 ~ 234 (274)
T PRK14265 234 N 234 (274)
T ss_pred e
Confidence 6
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=319.34 Aligned_cols=216 Identities=14% Similarity=0.148 Sum_probs=166.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++|++++|+... +|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 21 ~~~~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDH------ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred CceEEEEeeeEEEECCcc------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 456899999999996433 6999999999999999999999999999999999985 6899999998763
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCcccc----ccccccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCAL----MKNDAEIDD 210 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~----L~~~~~~~~ 210 (382)
... .....+++ .++|+||++.+|+ .|+.+|+.+.......... ..+.+.++++.++ +.+.+ +++
T Consensus 95 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~ 164 (271)
T PRK14238 95 DKS-------YSVEELRT-NVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDN 164 (271)
T ss_pred ccc-------ccHHHHhh-hEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcC
Confidence 211 01112343 8999999998887 5999999754321110000 1122344455443 33333 488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .+ +.|||++|||++. +..+||++++
T Consensus 165 ~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-~~tiiivsH~~~~--i~~~~d~i~~ 238 (271)
T PRK14238 165 AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL---KK-DYSIIIVTHNMQQ--AARISDKTAF 238 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---Hc-CCEEEEEEcCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 99999999999999998 33 6899999996555 8889999999
Q ss_pred hhh---ccccccccee
Q 016817 288 CEY---LGVSEISGVY 300 (382)
Q Consensus 288 l~~---~~~~~~~~v~ 300 (382)
+++ +..+++++++
T Consensus 239 l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 239 FLNGYVNEYDDTDKIF 254 (271)
T ss_pred EECCEEEEeCCHHHHH
Confidence 986 3334444443
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=317.80 Aligned_cols=220 Identities=17% Similarity=0.118 Sum_probs=170.9
Q ss_pred hhHHHHHhhhcccC-------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCC
Q 016817 66 LNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN 137 (382)
Q Consensus 66 ~i~i~nvs~~y~~~-------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~ 137 (382)
+|+++||+++|+.+ .+. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQT----VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78 (268)
T ss_pred eEEEeceEEEecCCccccccCcee----eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 68899999999731 222 5999999999999999999999999999999999998 89999999986542
Q ss_pred cccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
.. ......+++ .++|+||++ .+++..++.+|+......+.. .....+.+.++++.+++.....++++.+
T Consensus 79 ~~------~~~~~~~~~-~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 151 (268)
T PRK10419 79 LN------RAQRKAFRR-DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ 151 (268)
T ss_pred cC------hhHHHHHHh-cEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCcc
Confidence 21 112222444 899999997 356678899988543211111 1112235677888899963333489999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|++|||++. +..+||+++++++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~--~~~~~tiiivsH~~~~--i~~~~d~i~~l~~ 227 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQ--QQFGTACLFITHDLRL--VERFCQRVMVMDN 227 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH--HHcCcEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999 999999999999999983 3348999999996655 8889999999976
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+++.+++
T Consensus 228 G~i~~~g~~~~~~ 240 (268)
T PRK10419 228 GQIVETQPVGDKL 240 (268)
T ss_pred CEEeeeCChhhcc
Confidence 3344444433
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=314.82 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=165.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. . +|+|+||++.+||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 i~i~~l~~~~~~~--~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~------ 68 (237)
T TIGR00968 1 IEIANISKRFGSF--Q----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH------ 68 (237)
T ss_pred CEEEEEEEEECCe--e----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC------
Confidence 3578999999643 2 5999999999999999999999999999999999999 8999999998764221
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+ +.++|++|++.+|+..|+.+|+.+....... .....+.+.++++.+++.+..+ +.+.+|||||+||++|
T Consensus 69 -----~~~-~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~l 141 (237)
T TIGR00968 69 -----ARD-RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-RYPNQLSGGQRQRVAL 141 (237)
T ss_pred -----hhh-cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHH
Confidence 022 3799999999999888999999654321110 1111244567888899976554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|+++|||| +||+.++..+.+.|.++. .+.|+|||++||++.. +.++||+++++++
T Consensus 142 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tvli~sH~~~~--~~~~~d~i~~l~~ 206 (237)
T TIGR00968 142 ARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLH--DEVHVTTVFVTHDQEE--AMEVADRIVVMSN 206 (237)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHhhcCEEEEEEC
Confidence 999999999999999 999999999999999973 3348999999995554 8889999999976
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=306.05 Aligned_cols=194 Identities=15% Similarity=0.069 Sum_probs=159.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|+++.|+... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~------~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------- 68 (207)
T PRK13539 2 MLEGEDLACVRGGRV------LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD------- 68 (207)
T ss_pred EEEEEeEEEEECCeE------EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-------
Confidence 578899999996432 5999999999999999999999999999999999998 89999999985421
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.. .+. .++|++|++.+++..|+.+|+.+..... + ...+.+.++++.+|+.+.. ++++.+||||||||++|
T Consensus 69 --~~---~~~-~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~l 138 (207)
T PRK13539 69 --PD---VAE-ACHYLGHRNAMKPALTVAENLEFWAAFL--G-GEELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVAL 138 (207)
T ss_pred --hh---hHh-hcEEecCCCcCCCCCcHHHHHHHHHHhc--C-CcHHHHHHHHHHcCCHHHH-cCChhhcCHHHHHHHHH
Confidence 01 333 7999999888888899999996543211 1 1223467789999998654 48999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +.. ++++.+.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~--~~~~~~~ 199 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH---LAQGGIVIAATHIPLG--LPG--ARELDLG 199 (207)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCchh--hcc--CcEEeec
Confidence 999999999999999 99999999999999987 3358999999996655 664 5555543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=313.05 Aligned_cols=200 Identities=13% Similarity=0.065 Sum_probs=165.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.....
T Consensus 1 l~~~~l~~~~~~-~------~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~----- 68 (235)
T cd03299 1 LKVENLSKDWKE-F------KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP----- 68 (235)
T ss_pred CeeEeEEEEeCC-c------eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-----
Confidence 457889999963 2 4999999999999999999999999999999999999 89999999987642210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|++|++.+|+..|+.+|+.+........ ....+.+.++++.+++.+.+. +++.+|||||+|||+|
T Consensus 69 ------~~-~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~l 140 (235)
T cd03299 69 ------EK-RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-RKPETLSGGEQQRVAI 140 (235)
T ss_pred ------hH-cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-cCcccCCHHHHHHHHH
Confidence 12 38999999999998899999996542211100 112234567888999986655 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++|+||| +||+.++..+.+.|+++. .+.|.|+|++||++.. +..+||+++++++
T Consensus 141 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~~~tili~tH~~~~--~~~~~d~i~~l~~ 205 (235)
T cd03299 141 ARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR--KEFGVTVLHVTHDFEE--AWALADKVAIMLN 205 (235)
T ss_pred HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 999999999999999983 3348999999996555 8888999998876
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=285.12 Aligned_cols=203 Identities=17% Similarity=0.149 Sum_probs=170.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.++++++.+.- ++.+ +|+++||++.+||+++|+||||||||||+|+++-|+. ++|+++|.|+++.....
T Consensus 3 lle~kq~~y~a--~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~p---- 72 (223)
T COG4619 3 LLELKQVGYLA--GDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP---- 72 (223)
T ss_pred chHHHHHHhhc--CCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccCh----
Confidence 35666665544 3333 5999999999999999999999999999999999999 99999999998765432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+|. +|+|+.|.|.||+ .||++|+.+.. .......+...+...++++++.+...++.+..|||||+||++|
T Consensus 73 -----ea~Rq-~VsY~~Q~paLfg-~tVeDNlifP~-~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAl 144 (223)
T COG4619 73 -----EAYRQ-QVSYCAQTPALFG-DTVEDNLIFPW-QIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIAL 144 (223)
T ss_pred -----HHHHH-HHHHHHcCccccc-cchhhccccch-HHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHH
Confidence 23665 8999999999999 79999997643 2223344556677889999998877779999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|-|.--|+|||||| +||+.+.+.|-++|.++. ++++..++.||||.+. +.+.+++++-+..
T Consensus 145 iR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v--~~q~vAv~WiTHd~dq--a~rha~k~itl~~ 209 (223)
T COG4619 145 IRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV--REQNVAVLWITHDKDQ--AIRHADKVITLQP 209 (223)
T ss_pred HHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh--hhhceEEEEEecChHH--HhhhhheEEEecc
Confidence 999999999999999 999999999999999984 6788999999997666 7777877776543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=316.39 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=162.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~ 138 (382)
++++++|++++|++. . +|+|+||+|++||+++|+|+||||||||+++|+|+++ + +|+|.++|+++...
T Consensus 6 ~~l~~~~l~~~~~~~--~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNTS--K----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECCe--E----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 478899999999642 2 5999999999999999999999999999999999987 2 79999999866321
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccc---cccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKN---DAEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~---~~~~~~~~~ 213 (382)
. .....++. .++|+||++.+|+ .|+.+|+......... . ....+.+.++++.+++.+ ...++++.+
T Consensus 80 ~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 150 (259)
T PRK14260 80 R-------ININRLRR-QIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALG 150 (259)
T ss_pred c-------cchHhhhh-heEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCccc
Confidence 0 01112343 7999999999998 8999999654321110 1 111234556777777732 123488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +++|||++|||++. +..+||++++|+
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiii~tH~~~~--i~~~~d~i~~l~ 223 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL---R-SELTIAIVTHNMQQ--ATRVSDFTAFFS 223 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhcCeEEEEe
Confidence 99999999999999999999999999 99999999999999998 2 35899999996555 999999999986
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=344.83 Aligned_cols=213 Identities=18% Similarity=0.108 Sum_probs=169.3
Q ss_pred CchhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 64 DGLNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
.++++++|++++|+.+ ... +|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~----~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 78 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRT----VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL 78 (529)
T ss_pred CceEEEeceEEEecCCCCcee----eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence 3579999999999642 122 5999999999999999999999999999999999997 389999999976
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhh-hcC-ccccccccccCcccccccc--cccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWM-SEG-VHHNQRCLRSDDCALMKND--AEID 209 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~-~~~-~~~~~~~~~~l~~~~L~~~--~~~~ 209 (382)
.... .......|++.+||+||++. +++..++.+|+....... +.. ....+++.++++.+|+.+. ..++
T Consensus 79 ~~~~------~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 79 LHAS------EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred ccCC------HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhh
Confidence 4221 11222234347999999974 567788999886432111 111 1123456788999999752 2348
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
++.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||+|+
T Consensus 153 ~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tvi~vtHd~~~--~~~~~dri~ 228 (529)
T PRK15134 153 YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ--QELNMGLLFITHNLSI--VRKLADRVA 228 (529)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHH--HhcCCeEEEEcCcHHH--HHHhcCEEE
Confidence 999999999999999999999999999999 999999999999999983 3358999999996666 888999999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
+|++
T Consensus 229 ~l~~ 232 (529)
T PRK15134 229 VMQN 232 (529)
T ss_pred EEEC
Confidence 9986
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=343.67 Aligned_cols=205 Identities=14% Similarity=0.035 Sum_probs=169.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 3 ~~l~~~~l~~~~~~~--~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~---- 72 (501)
T PRK11288 3 PYLSFDGIGKTFPGV--K----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAS---- 72 (501)
T ss_pred ceEEEeeeEEEECCE--E----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC----
Confidence 478999999999642 2 5999999999999999999999999999999999998 8999999998764211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccccccccccccccCCCcccee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
. ...+| +.+||++|++.+++.+|+.+|+.+.......+ ....+++.++++.+++.+.. ++++.+||||||
T Consensus 73 --~--~~~~~-~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~ 146 (501)
T PRK11288 73 --T--TAALA-AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-DTPLKYLSIGQR 146 (501)
T ss_pred --H--HHHHh-CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-CCchhhCCHHHH
Confidence 0 11133 37999999999999899999997642111001 11124567789999997655 489999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||+||||++. +..+||++++|++
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiiiitHd~~~--~~~~~d~i~~l~~ 215 (501)
T PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL---RAEGRVILYVSHRMEE--IFALCDAITVFKD 215 (501)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999 99999999999999998 3468999999996665 8889999999976
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=307.93 Aligned_cols=196 Identities=20% Similarity=0.226 Sum_probs=157.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++... +|+|+||+|++|++++|+||||||||||+++|+|+.+ ++|+|.++|+++....
T Consensus 3 l~~~~l~~~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~------ 72 (220)
T cd03245 3 IEFRNVSFSYPNQEIP----ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD------ 72 (220)
T ss_pred EEEEEEEEEcCCCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCC------
Confidence 6788999999643222 5999999999999999999999999999999999998 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~L 214 (382)
...+++ .++|++|++.+|+ .|+.+|+.+.. .....+.+.++++.+++.+.+. +.| .+|
T Consensus 73 ---~~~~~~-~i~~~~q~~~~~~-~tv~e~l~~~~-----~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~L 141 (220)
T cd03245 73 ---PADLRR-NIGYVPQDVTLFY-GTLRDNITLGA-----PLADDERILRAAELAGVTDFVN-KHPNGLDLQIGERGRGL 141 (220)
T ss_pred ---HHHHHh-hEEEeCCCCcccc-chHHHHhhcCC-----CCCCHHHHHHHHHHcCcHHHHH-hccccccceecCCCccC
Confidence 111333 7999999998887 69999985421 1112234455677777765443 444 699
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||++|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||++|||++. + ++||+++++++
T Consensus 142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~~sH~~~~--~-~~~d~v~~l~~ 213 (220)
T cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL---G-DKTLIIITHRPSL--L-DLVDRIIVMDS 213 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---C-CCEEEEEeCCHHH--H-HhCCEEEEEeC
Confidence 9999999999999999999999999 999999999999999983 2 3899999997664 6 58899988875
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=313.33 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=160.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~~ 139 (382)
+++++|+++.|+... +|+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~- 75 (249)
T PRK14253 3 KFNIENLDLFYGENQ------ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN- 75 (249)
T ss_pred eEEEeccEEEECCee------eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc-
Confidence 578999999996422 5999999999999999999999999999999999987 3 89999999865311
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---ccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~~~L 214 (382)
.....+|+ .++|+||++.+|+ .|+.+|+.+......... ...+++.++++.+++.+. ..++++.+|
T Consensus 76 -------~~~~~~~~-~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 146 (249)
T PRK14253 76 -------IDVADLRI-KVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGL 146 (249)
T ss_pred -------cchHHHHh-heeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccC
Confidence 01112343 7999999999887 899999975432111000 111234456666776421 224788999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +..+||+++++++
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~-~~tii~~sh~~~~--~~~~~d~i~~l~~ 219 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK---K-NYTIVIVTHSMQQ--ARRISDRTAFFLM 219 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---c-CCeEEEEecCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999999999 999999999999999983 2 5899999996555 8999999999986
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=309.46 Aligned_cols=187 Identities=16% Similarity=0.138 Sum_probs=158.6
Q ss_pred chhHHHHHhhhcccCCe-----eeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDF-----WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~-----~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~ 138 (382)
.+++++|+++.|..+.. .+ .+++||||+|++||++||||+||||||||-|+|.||++ ++|+|+|+|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v--~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~- 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYV--KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK- 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccce--EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh-
Confidence 46889999999975421 12 37999999999999999999999999999999999999 89999999986431
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
+. . ....+++.++|+.+|+.+...+++|++|||||
T Consensus 80 ------------------~~--------------~-------------~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 80 ------------------LS--------------K-------------EERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred ------------------cc--------------h-------------hHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 11 0 01124566788889987655569999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
+|||+|||||+.+|+++++|| +||...+.+++++|+++ +++.|.|.++||||+.. +..+||++.+|.. +.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl--q~~~~lt~lFIsHDL~v--v~~isdri~VMy~G~iVE 190 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL--QEELGLTYLFISHDLSV--VRYISDRIAVMYLGKIVE 190 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH--HHHhCCeEEEEEEEHHh--hhhhcccEEEEecCceeE
Confidence 999999999999999999999 99999999999999999 46779999999997777 9999999999986 67
Q ss_pred cccccceeeEE
Q 016817 293 VSEISGVYDIV 303 (382)
Q Consensus 293 ~~~~~~v~~~~ 303 (382)
.++.+++|..|
T Consensus 191 ~g~~~~~~~~p 201 (268)
T COG4608 191 IGPTEEVFSNP 201 (268)
T ss_pred ecCHHHHhhCC
Confidence 77778888543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=302.35 Aligned_cols=184 Identities=15% Similarity=0.048 Sum_probs=153.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 68 (198)
T TIGR01189 1 LAARNLACSRGER--M----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR------ 68 (198)
T ss_pred CEEEEEEEEECCE--E----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch------
Confidence 3578899999643 2 5999999999999999999999999999999999998 8999999998654211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..++ +.++|++|++.+++..|+.+|+....... . ...+.+.++++.+++.+..+ +++.+|||||||||+||
T Consensus 69 ----~~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la 139 (198)
T TIGR01189 69 ----DEPH-RNILYLGHLPGLKPELSALENLHFWAAIH--G-GAQRTIEDALAAVGLTGFED-LPAAQLSAGQQRRLALA 139 (198)
T ss_pred ----HHhh-hheEEeccCcccccCCcHHHHHHHHHHHc--C-CcHHHHHHHHHHcCCHHHhc-CChhhcCHHHHHHHHHH
Confidence 1133 37999999988888899999997543211 1 11234677888999986654 89999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .+.|.|+|++||+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 140 RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH---LARGGIVLLTTHQDL 188 (198)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEEEcccc
Confidence 99999999999999 99999999999999997 345899999999653
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=342.87 Aligned_cols=205 Identities=12% Similarity=0.062 Sum_probs=166.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++|++++|++. . +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 ~l~i~~l~~~~~~~--~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~--- 71 (500)
T TIGR02633 1 LLEMKGIVKTFGGV--K----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN--- 71 (500)
T ss_pred CEEEEeEEEEeCCe--E----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC---
Confidence 36789999999542 2 5999999999999999999999999999999999987 3899999998764321
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC--c---cccccccccCccccccccccccccCCCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG--V---HHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~--~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
... ..+ +.+||+||++.+++.+|+.+|+.+........ . ...+++.++++.+++.+...++++.+||||
T Consensus 72 ---~~~--~~~-~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 145 (500)
T TIGR02633 72 ---IRD--TER-AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGG 145 (500)
T ss_pred ---HHH--HHh-CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHH
Confidence 111 122 37999999998999899999996542111000 0 112356678899999765444789999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||||+.+|++||||| +||+.++..+.+.|+++ +++|.|||+||||++. +..+||++++|++
T Consensus 146 ~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tviiitHd~~~--~~~~~d~i~~l~~ 216 (500)
T TIGR02633 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL---KAHGVACVYISHKLNE--VKAVCDTICVIRD 216 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCcHHH--HHHhCCEEEEEeC
Confidence 9999999999999999999999 99999999999999998 3468999999996665 8899999999976
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=320.24 Aligned_cols=206 Identities=16% Similarity=0.125 Sum_probs=163.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++|+++|++++|+.. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 36 ~~~~l~i~~l~~~~~~~--~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 36 GETVIEARDLNVFYGDE--Q----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCceEEEEEEEEEECCE--e----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 35689999999999643 2 5999999999999999999999999999999999984 5899999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccc----cccccccC
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN----DAEIDDLK 212 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~ 212 (382)
.... ....+++ .++|+||++.+|+. |+.+|+.+............+++.++++.+++.. .+ ++++.
T Consensus 110 ~~~~-------~~~~~~~-~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 179 (285)
T PRK14254 110 DADV-------DPVALRR-RIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQL-DSSGL 179 (285)
T ss_pred cccc-------chHhhhc-cEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHH-hCCcc
Confidence 2110 0112343 89999999988884 9999997543211111112345667788888742 33 48899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh-hh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK-IC 288 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~-ll 288 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. + +.|||++|||++. +..+||+++ ++
T Consensus 180 ~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~---~-~~tiii~tH~~~~--i~~~~dri~v~l 253 (285)
T PRK14254 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA---E-EYTVVIVTHNMQQ--AARISDKTAVFL 253 (285)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---c-CCEEEEEeCCHHH--HHhhcCEEEEEe
Confidence 999999999999999999999999999 999999999999999983 2 4799999996665 888899864 55
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 254 ~~ 255 (285)
T PRK14254 254 TG 255 (285)
T ss_pred eC
Confidence 54
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=311.96 Aligned_cols=201 Identities=17% Similarity=0.114 Sum_probs=153.7
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.+..+ +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------ 70 (237)
T cd03252 1 ITFEHVRFRYKPDGPV----ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD------ 70 (237)
T ss_pred CEEEEEEEecCCCCcc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcC------
Confidence 4578999999643322 5999999999999999999999999999999999998 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Ccc---ccccccccCccc--cccccccccccCCCcccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVH---HNQRCLRSDDCA--LMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~---~~~~~~~~l~~~--~L~~~~~~~~~~~LSGGqk 219 (382)
...+++ .++|+||++.+|+ .|+.+|+......... ... ......+.++.+ ++...+ ++++.+||||||
T Consensus 71 ---~~~~~~-~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~LSgG~~ 144 (237)
T cd03252 71 ---PAWLRR-QVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIV-GEQGAGLSGGQR 144 (237)
T ss_pred ---HHHHhh-cEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchh-hcCCCcCCHHHH
Confidence 112343 7999999988876 7999999643210000 000 000111222223 444333 378899999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++ . +|+|||++|||++. +. .||+++++++
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~sH~~~~--~~-~~d~v~~l~~ 211 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI---C-AGRTVIIIAHRLST--VK-NADRIIVMEK 211 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCCHHH--HH-hCCEEEEEEC
Confidence 99999999999999999999 99999999999999998 3 38999999997665 75 5889888876
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=380.73 Aligned_cols=250 Identities=16% Similarity=0.125 Sum_probs=203.3
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------c----CcCchhHHHHHhhhcccCCeeeecCCcccC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------I----APDGLNELRHKFLSYRSGDFWIPIGGIQKG 91 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~i~i~nvs~~y~~~~~~v~~~vL~~i 91 (382)
.++..|+..++.....++....+.+|+.++.+.+++.. + +..+.|+++||+++|+.+..+ +|+|+
T Consensus 1230 ~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~----vL~~i 1305 (1522)
T TIGR00957 1230 LQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDL----VLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcc----cccce
Confidence 45678999999999999999999999999987664311 0 123579999999999765333 69999
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChh
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYN 170 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~ 170 (382)
||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.|+.+.+. ..+|+ ++++|+|||.+|+ .
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~---------~~LR~-~i~iVpQdp~LF~-g 1374 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL---------HDLRF-KITIIPQDPVLFS-G 1374 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH---------HHHHh-cCeEECCCCcccC-c
Confidence 99999999999999999999999999999999 89999999998875542 23676 8999999999998 6
Q ss_pred hhhhhHHHHHhhhhcCccccccccccCcccccccccc------ccc----cCCCccceeeecceeeeehhHHHHHHHHh-
Q 016817 171 RVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE------IDD----LKSSPKYVLRRVDFAMVVSNIAEIYKALK- 239 (382)
Q Consensus 171 tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~------~~~----~~~LSGGqkQRvaIAraL~~~P~iLLLDE- 239 (382)
|+++|+... +...++++.++++.+++.+++. |.. ...||||||||++|||||+++|+||||||
T Consensus 1375 TIr~NLdp~------~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEa 1448 (1522)
T TIGR00957 1375 SLRMNLDPF------SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEA 1448 (1522)
T ss_pred cHHHHcCcc------cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999521 2344566778888888765443 122 23599999999999999999999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+||+++...|++.|++.. +++|+|+|+| +++++.. +|+|++|++ +..|++.+.+
T Consensus 1449 TSalD~~Te~~Iq~~l~~~~----~~~TvI~IAH--Rl~ti~~-~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1449 TAAVDLETDNLIQSTIRTQF----EDCTVLTIAH--RLNTIMD-YTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEEec--CHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999863 5899999999 6666775 677777876 5556555544
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=341.48 Aligned_cols=212 Identities=12% Similarity=0.076 Sum_probs=164.8
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEe-----------
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQ----------- 132 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G----------- 132 (382)
|+++|++++|++ .. +|+|+||+|++|++++|+||||||||||+|+|+|++ + ++|+|+++|
T Consensus 1 l~~~~l~~~~~~--~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG--KE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC--eE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 467899999953 22 599999999999999999999999999999999996 5 799999973
Q ss_pred ------------ecCCCc-ccceeehhhhhhhHhhhccceeeEe-CCCCChhhhhhhHHHHHhhhhcC-ccccccccccC
Q 016817 133 ------------TSSGNS-SHTITMYMEEHNVMRSLQSGFCVYD-SRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSD 197 (382)
Q Consensus 133 ------------~~i~~~-~~~~~~~~~~~~~~r~~~ig~v~Q~-~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l 197 (382)
.++... .............+|+ .+||+||+ +.+|+.+|+.+|+.+.....+.. ....+++.+++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRK-RIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI 153 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhh-cEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111000 0000001111222343 79999997 67888899999997643211111 11234567789
Q ss_pred ccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 198 DCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 198 ~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
+.+|+.+... +++.+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. ++.|+|||+||||++
T Consensus 154 ~~~gl~~~~~-~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tviivtHd~~ 230 (520)
T TIGR03269 154 EMVQLSHRIT-HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAV--KASGISMVLTSHWPE 230 (520)
T ss_pred HHcCChhhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCCHH
Confidence 9999986654 8999999999999999999999999999999 999999999999999983 445899999999766
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
. +..+||++++|++
T Consensus 231 ~--~~~~~d~i~~l~~ 244 (520)
T TIGR03269 231 V--IEDLSDKAIWLEN 244 (520)
T ss_pred H--HHHhcCEEEEEeC
Confidence 6 8889999999976
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=320.88 Aligned_cols=206 Identities=15% Similarity=0.100 Sum_probs=163.3
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++.
T Consensus 36 ~~~~l~~~~l~~~~~~~--~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF--E----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 45689999999999642 2 5999999999999999999999999999999999863 6899999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccc----ccccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMK----NDAEIDD 210 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~----~~~~~~~ 210 (382)
... .....+|+ .++|++|++.+|+ .|+.+|+.+......... ..++.+.++++.+++. +.. +++
T Consensus 110 ~~~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~ 179 (286)
T PRK14275 110 GKF-------TDEVLLRK-KIGMVFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL-DKN 179 (286)
T ss_pred hcc-------cchHHhhh-cEEEECCCCCCCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHh-hCC
Confidence 211 01112343 8999999998888 599999976432111110 1123445667777763 333 488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. .+.|||++|||++. +..+||++++
T Consensus 180 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~----~~~tvIivsH~~~~--~~~~~d~i~~ 253 (286)
T PRK14275 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR----GSYTIMIVTHNMQQ--ASRVSDYTMF 253 (286)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 999999999999999972 25899999996555 8889999999
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 254 L~~ 256 (286)
T PRK14275 254 FYE 256 (286)
T ss_pred EEC
Confidence 976
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=315.98 Aligned_cols=207 Identities=13% Similarity=0.041 Sum_probs=164.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~ 138 (382)
++++++|++++|+... +|+|+||++++|++++|+||||||||||+++|+|+++ + +|+|.++|+++...
T Consensus 6 ~~l~~~nl~~~~~~~~------il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK------ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCCee------EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 4789999999996432 5999999999999999999999999999999999998 4 78999998865311
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Cc-cccccccccCcccccccc---ccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GV-HHNQRCLRSDDCALMKND---AEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~-~~~~~~~~~l~~~~L~~~---~~~~~~~~ 213 (382)
. .....+++ .++|+||++.+|+ .|+.+|+......... .. ...+.+.++++.+++.+. ..++++.+
T Consensus 80 ~-------~~~~~~~~-~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 150 (261)
T PRK14258 80 R-------VNLNRLRR-QVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALD 150 (261)
T ss_pred c-------cchHHhhc-cEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCccc
Confidence 0 01112343 7999999998888 8999999654311110 11 112345667778877431 23488899
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||+|||||+.+|++||||| +||+.++..+.+.|+++. .+.|.|||+||||+.. +.++||++++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~--~~~~~tiiivsH~~~~--i~~~~d~i~~l~~ 226 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLR--LRSELTMVIVSHNLHQ--VSRLSDFTAFFKG 226 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HhCCCEEEEEECCHHH--HHHhcCEEEEEcc
Confidence 99999999999999999999999999 999999999999999973 3358999999996655 9999999999984
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=314.24 Aligned_cols=216 Identities=16% Similarity=0.142 Sum_probs=166.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
.++|+++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH------ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECCee------eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 45899999999996432 6999999999999999999999999999999999974 27999999987643
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---ccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~~ 212 (382)
.. ......++ .++|+||++.+|+ .|+.+|+.+......... ..++.+.++++.+++.+. ..++.+.
T Consensus 78 ~~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 148 (253)
T PRK14261 78 SG-------ADVVALRR-KIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL 148 (253)
T ss_pred cc-------cchhhhhc-eEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChh
Confidence 21 01112343 7999999999888 599999976432211100 112345566677776421 1248899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. + ++|||++|||+.. +..++|++++++
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~---~-~~tvii~sh~~~~--~~~~~d~v~~l~ 222 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK---K-EYTVIIVTHNMQQ--AARVSDYTGFMY 222 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---h-CceEEEEEcCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 2 5899999996555 888899999987
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ +..+++++++
T Consensus 223 ~G~i~~~g~~~~~~ 236 (253)
T PRK14261 223 LGKLIEFDKTTQIF 236 (253)
T ss_pred CCEEEEcCCHHHHH
Confidence 6 3334444443
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=313.94 Aligned_cols=201 Identities=16% Similarity=0.092 Sum_probs=161.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----ccceeeeEeecCCCccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----~~G~I~i~G~~i~~~~~ 140 (382)
+++++|++++| +.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 4 ~l~~~~l~~~~-~~~------il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~-- 74 (254)
T PRK10418 4 QIELRNIALQA-AQP------LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC-- 74 (254)
T ss_pred EEEEeCeEEEe-ccc------eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--
Confidence 68899999999 222 5999999999999999999999999999999999986 479999999865310
Q ss_pred ceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCccccccccccCcccccccc--ccccccCCCcc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND--AEIDDLKSSPK 216 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~LSG 216 (382)
..+++.++|+||++. +.+..|+.+++.+.....+. ....+++.++++.+++.+. ..++.+.+|||
T Consensus 75 ----------~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~ 143 (254)
T PRK10418 75 ----------ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK-PADDATLTAALEAVGLENAARVLKLYPFEMSG 143 (254)
T ss_pred ----------ccccceEEEEecCCccccCccccHHHHHHHHHHHcCC-ChHHHHHHHHHHHcCCCChhhhhhcCCcccCH
Confidence 012237999999974 34556887877543222211 1123456778889998752 23488999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++||+++. +..+||+++++++
T Consensus 144 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~--~~~g~til~~sH~~~~--~~~~~d~v~~l~~ 216 (254)
T PRK10418 144 GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV--QKRALGMLLVTHDMGV--VARLADDVAVMSH 216 (254)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH--HhcCcEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999 999999999999999983 3458999999995555 8889999999986
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=312.95 Aligned_cols=202 Identities=13% Similarity=0.098 Sum_probs=160.3
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcccc
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~~~ 141 (382)
+++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++....
T Consensus 7 ~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~-- 78 (251)
T PRK14244 7 SVKNLNLWYGSK--Q----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD-- 78 (251)
T ss_pred EeeeEEEEECCe--e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc--
Confidence 578999999632 2 5999999999999999999999999999999999974 3899999998653211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC---ccccccccccCcccccccc---ccccccCCCc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG---VHHNQRCLRSDDCALMKND---AEIDDLKSSP 215 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~---~~~~~~~~~~l~~~~L~~~---~~~~~~~~LS 215 (382)
.....+|+ .++|+||++.+|+. |+.+|+.+........ ...++.+.++++.+++.+. ..++.+.+||
T Consensus 79 -----~~~~~~~~-~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 151 (251)
T PRK14244 79 -----TNVVLLRA-KVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELS 151 (251)
T ss_pred -----cchHHHhh-hEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCC
Confidence 01112343 89999999988884 9999997542111110 0112345667888888642 2237889999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +|+|||+||||++. +..+||+++++++
T Consensus 152 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiiiisH~~~~--~~~~~d~i~~l~~ 223 (251)
T PRK14244 152 GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL---K-KNFTIIVVTHSMKQ--AKKVSDRVAFFQS 223 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHhhcCEEEEEEC
Confidence 999999999999999999999999 99999999999999997 3 37999999996555 8889999999986
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=305.22 Aligned_cols=203 Identities=15% Similarity=0.055 Sum_probs=163.9
Q ss_pred hhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc----ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~i~G~~i~~~~ 139 (382)
.+.++||+++|++.+ .. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~-- 76 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYAR----ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP-- 76 (226)
T ss_pred cceeecceeeeecCccccc----cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--
Confidence 456899999996542 22 6999999999999999999999999999999999986 59999999986421
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-cc---ccccccc-cCccccccccccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VH---HNQRCLR-SDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~---~~~~~~~-~l~~~~L~~~~~~~~~~~L 214 (382)
..+| +.++|+||++.+|+.+|+.+|+.+........ .. ....+.+ .++.+++.+... +.+.+|
T Consensus 77 ----------~~~~-~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~L 144 (226)
T cd03234 77 ----------DQFQ-KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG-NLVKGI 144 (226)
T ss_pred ----------HHhc-ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc-ccccCc
Confidence 1133 38999999999999899999997643221111 01 1112334 788888876544 889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+|||+|||||+.+|++||||| +||+.++..+.+.|+++ .+.|.|+|++||+++ +++..+||+++++++
T Consensus 145 S~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~---~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~ 219 (226)
T cd03234 145 SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL---ARRNRIVILTIHQPR-SDLFRLFDRILLLSS 219 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCCC-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999 99999999999999997 335899999999652 237889999998875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=306.26 Aligned_cols=183 Identities=16% Similarity=0.102 Sum_probs=152.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.... ...+|++|++.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------------~~~~~v~q~~~l 65 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG---------------PDRMVVFQNYSL 65 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------------hhheEEecCccc
Confidence 578999999999999999999999999999999999 8999999998764211 124799999999
Q ss_pred CChhhhhhhHHHHHhhhhcCc---cccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 167 FNYNRVHEGLEELSSWMSEGV---HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+.+|+.+|+........... ...+++.++++.+++.+... +++.+|||||||||+|||||+.+|++||||| +
T Consensus 66 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 66 LPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred CCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 998999999976421110111 11234667888999986554 8999999999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.++..+.+.|+++. ++.|+|||+||||++. +..+||++++|++
T Consensus 145 LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~v~~l~~ 190 (230)
T TIGR01184 145 LDALTRGNLQEELMQIW--EEHRVTVLMVTHDVDE--ALLLSDRVVMLTN 190 (230)
T ss_pred CCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcCEEEEEeC
Confidence 99999999999999983 3458999999996655 8889999999976
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=316.85 Aligned_cols=209 Identities=16% Similarity=0.099 Sum_probs=165.3
Q ss_pred cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeec
Q 016817 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTS 134 (382)
Q Consensus 61 ~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~ 134 (382)
+...++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.+
T Consensus 20 ~~~~~~l~~~nl~~~~~~~--~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~ 93 (272)
T PRK14236 20 SDEQTALEVRNLNLFYGDK--Q----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN 93 (272)
T ss_pred CCCCcEEEEEEEEEEECCe--e----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE
Confidence 3345689999999999642 2 5999999999999999999999999999999999975 49999999987
Q ss_pred CCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---cccc
Q 016817 135 SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEID 209 (382)
Q Consensus 135 i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~ 209 (382)
+.... .....+|+ .++|++|++.+|+. |+.+|+........... ...+.+.++++.+++.+. ..++
T Consensus 94 i~~~~-------~~~~~~~~-~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 164 (272)
T PRK14236 94 IYDKK-------VDVAELRR-RVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHE 164 (272)
T ss_pred Ccccc-------cCHHHHhc-cEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhC
Confidence 64211 01112344 89999999988885 99999965421111001 112345666777777431 2247
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
.+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .+ +.|||++|||++. +.++||+++
T Consensus 165 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~---~~-~~tiiivtH~~~~--~~~~~d~i~ 238 (272)
T PRK14236 165 NAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL---KS-KYTIVIVTHNMQQ--AARVSDYTA 238 (272)
T ss_pred CcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH---Hh-CCeEEEEeCCHHH--HHhhCCEEE
Confidence 899999999999999999999999999999 99999999999999998 33 6899999996555 888999999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
++++
T Consensus 239 ~l~~ 242 (272)
T PRK14236 239 FMYM 242 (272)
T ss_pred EEEC
Confidence 9987
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=296.17 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=142.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.... .....+++ .++|++|++.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-------~~~~~~~~-~i~~~~q~~~ 78 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR-------KGLLERRQ-RVGLVFQDPD 78 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc-------cchHHHHh-hEEEEecChh
Confidence 6999999999999999999999999999999999999 8999999998753110 11122343 7999999973
Q ss_pred --CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 166 --GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 166 --l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
+|+ .|+.+|+.+........ ....+++.++++.+++.+..+ +++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 156 (190)
T TIGR01166 79 DQLFA-ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156 (190)
T ss_pred hcccc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 554 79999997543211111 111235667888999986654 9999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+||+.++..+.+.|+++ +++|+|||+||||++.
T Consensus 157 ~LD~~~~~~~~~~l~~~---~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 157 GLDPAGREQMLAILRRL---RAEGMTVVISTHDVDL 189 (190)
T ss_pred cCCHHHHHHHHHHHHHH---HHcCCEEEEEeecccc
Confidence 99999999999999998 3458999999997654
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=311.49 Aligned_cols=207 Identities=15% Similarity=0.047 Sum_probs=163.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh--hc-ccceeeeEeecCCCccc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl--~~-~~G~I~i~G~~i~~~~~ 140 (382)
+.+++++|+++.|++. . +|+++||+|++||+++|+||||||||||+++|+|+ ++ ++|+|+++|.++.....
T Consensus 5 ~~~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 5 KPILEIKNLHASVNEN--E----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred CceEEEEeEEEEeCCE--E----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 4479999999999642 2 59999999999999999999999999999999998 45 79999999987643221
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCcc------ccccccccCccccccccccccccC
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGVH------HNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~~------~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
.. .+...++|++|++.+++..++.+++........ .... ..+++.++++.+++.+...++.+.
T Consensus 79 ------~~---~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 79 ------EE---RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred ------hh---hheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc
Confidence 11 111248899999999998898888865321110 0000 013356678888987322347776
Q ss_pred -CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhhh
Q 016817 213 -SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLKI 287 (382)
Q Consensus 213 -~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~l 287 (382)
+|||||+|||+|||||+.+|++||||| +||+.++..+.++|+++ .+.|.|||++|||++. +..+ ||++++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~g~tii~~tH~~~~--~~~~~~d~i~~ 224 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL---MTSENSIILITHYQRL--LDYIKPDYVHV 224 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH--HHhhhCCEEEE
Confidence 599999999999999999999999999 99999999999999998 3358999999997666 7765 899998
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
+++
T Consensus 225 l~~ 227 (252)
T CHL00131 225 MQN 227 (252)
T ss_pred EeC
Confidence 876
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=316.99 Aligned_cols=216 Identities=13% Similarity=0.063 Sum_probs=167.9
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++||+++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 18 ~~~~l~i~nl~~~~~~~--~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGK--T----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred cCcEEEEeeEEEEECCE--E----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 45689999999999642 2 5999999999999999999999999999999999987 3899999998664
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Cc-cccccccccCcccccccc---cccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GV-HHNQRCLRSDDCALMKND---AEIDDL 211 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~-~~~~~~~~~l~~~~L~~~---~~~~~~ 211 (382)
... ....+++ .++|+||++.+|+ .|+.+|+.+....... .. ...+.+.++++.+++.+. ..++.+
T Consensus 92 ~~~--------~~~~~~~-~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~ 161 (276)
T PRK14271 92 NYR--------DVLEFRR-RVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSP 161 (276)
T ss_pred ccc--------hhHHHhh-heEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCc
Confidence 221 1112344 8999999999888 8999999754211110 00 011223456677777532 123789
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +..+||++++|
T Consensus 162 ~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~-~~tiiivsH~~~~--~~~~~dri~~l 235 (276)
T PRK14271 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA---D-RLTVIIVTHNLAQ--AARISDRAALF 235 (276)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---c-CCEEEEEeCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 3 4899999996555 88899999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..+++.+++
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 86 3334444443
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=339.65 Aligned_cols=201 Identities=14% Similarity=0.074 Sum_probs=164.4
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
++|++++|++. + +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 1 ~~nl~~~~~~~--~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------- 67 (491)
T PRK10982 1 MSNISKSFPGV--K----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS------- 67 (491)
T ss_pred CCceEEEeCCE--E----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCH-------
Confidence 36889999642 2 5999999999999999999999999999999999998 89999999987642211
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc---C-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE---G-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~---~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
...++ +.++|+||++.+++.+|+.+|+.+....... . ....+++.++++.+++.+... +++.+|||||||||+
T Consensus 68 -~~~~~-~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 68 -KEALE-NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-AKVATLSVSQMQMIE 144 (491)
T ss_pred -HHHHh-CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHH
Confidence 11123 3799999999888889999999653211100 0 011235667888899986554 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ .+.|.|||+||||++. +..+||++++|++
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tvii~tH~~~~--~~~~~d~i~~l~~ 209 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL---KERGCGIVYISHKMEE--IFQLCDEITILRD 209 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999 99999999999999998 3468999999996655 8889999999976
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=341.18 Aligned_cols=215 Identities=13% Similarity=0.063 Sum_probs=168.9
Q ss_pred cCchhHHHHHhhhccc---CCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeE-eecCCC
Q 016817 63 PDGLNELRHKFLSYRS---GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA-QTSSGN 137 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~---~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~-G~~i~~ 137 (382)
..++++++|++++|++ +... +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++ |.+..+
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVK----AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVD 351 (520)
T ss_pred CCceEEEeccEEEeccCCCCCce----EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccc
Confidence 3458999999999953 2222 5999999999999999999999999999999999998 89999996 643211
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCcccccccc----ccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKND----AEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~----~~~~~~~ 212 (382)
... .........++ .+||+||++.+++.+|+.+|+.+.. ..... ...++++.++++.+++.+. ..++++.
T Consensus 352 ~~~---~~~~~~~~~~~-~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 426 (520)
T TIGR03269 352 MTK---PGPDGRGRAKR-YIGILHQEYDLYPHRTVLDNLTEAI-GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPD 426 (520)
T ss_pred ccc---cchhhHHHHhh-hEEEEccCcccCCCCcHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence 110 00011112333 7999999998999899999997532 11111 1112356678889999641 2358999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+++.|+++. ++.|.|||+||||++. +.++||++++++
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tvi~vsHd~~~--~~~~~d~i~~l~ 502 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR--EEMEQTFIIVSHDMDF--VLDVCDRAALMR 502 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HHcCcEEEEEeCCHHH--HHHhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 3458999999997666 889999999997
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 503 ~ 503 (520)
T TIGR03269 503 D 503 (520)
T ss_pred C
Confidence 5
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=309.11 Aligned_cols=201 Identities=19% Similarity=0.132 Sum_probs=155.5
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++.... +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------ 70 (234)
T cd03251 1 VEFKNVTFRYPGDGPP----VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT------ 70 (234)
T ss_pred CEEEEEEEEeCCCCcc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC------
Confidence 3578999999654212 5999999999999999999999999999999999998 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-c---ccccccccCccc--cccccccccccCCCcccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-H---HNQRCLRSDDCA--LMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~---~~~~~~~~l~~~--~L~~~~~~~~~~~LSGGqk 219 (382)
...+++ .++|++|++.+|+ .|+.+|+........... . ....+.+.++.+ ++.... ++++.+||||||
T Consensus 71 ---~~~~~~-~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~LS~G~~ 144 (234)
T cd03251 71 ---LASLRR-QIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVI-GERGVKLSGGQR 144 (234)
T ss_pred ---HHHHHh-hEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceee-ccCCCcCCHHHH
Confidence 112343 7999999998887 699999964321100000 0 000122333333 455444 378999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|||++|||++. +.. ||+++++++
T Consensus 145 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~~-~d~v~~l~~ 211 (234)
T cd03251 145 QRIAIARALLKDPPILILDEATSALDTESERLVQAALERL---M-KNRTTFVIAHRLST--IEN-ADRIVVLED 211 (234)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh---c-CCCEEEEEecCHHH--Hhh-CCEEEEecC
Confidence 99999999999999999999 99999999999999998 3 37899999997665 765 899999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=348.21 Aligned_cols=238 Identities=16% Similarity=0.151 Sum_probs=187.3
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh--------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
.+..|+.+++.....+..+..+.+|+.++++.++.. .....+.++++||+|+|+++. + +|+|+||+|
T Consensus 284 ~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~----~l~~i~~~i 358 (585)
T TIGR01192 284 LLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSS-Q----GVFDVSFEA 358 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCC-c----cccceeEEE
Confidence 567899999999998888888889998888754321 011124689999999997533 2 699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.+.+. ..+|+ .++|++|++.+|+ .|+++
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---------~~~~~-~i~~v~q~~~lf~-~ti~~ 427 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR---------ESLRK-SIATVFQDAGLFN-RSIRE 427 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH---------HHHHh-heEEEccCCccCc-ccHHH
Confidence 9999999999999999999999999999 89999999997654321 12454 8999999999997 79999
Q ss_pred hHHHHHhhhhcCccccccccccCccccccc-----------cccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKN-----------DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+.+.. ....++++.++++.+++.+ ... .....||||||||++|||||+.+|++||||| +
T Consensus 428 Ni~~~~-----~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~~p~ililDEpts~ 501 (585)
T TIGR01192 428 NIRLGR-----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGGERQRLAIARAILKNAPILVLDEATSA 501 (585)
T ss_pred HHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 996431 1122333444444444332 222 4566799999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.++..+.+.|.++. .++|+|+|||++ +.+. .+|+++++++
T Consensus 502 LD~~~~~~i~~~l~~~~----~~~tvI~isH~~--~~~~-~~d~i~~l~~ 544 (585)
T TIGR01192 502 LDVETEARVKNAIDALR----KNRTTFIIAHRL--STVR-NADLVLFLDQ 544 (585)
T ss_pred CCHHHHHHHHHHHHHHh----CCCEEEEEEcCh--HHHH-cCCEEEEEEC
Confidence 99999999999999872 489999999955 4465 5888888876
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=307.72 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=161.5
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..++++++|++++|++.... .+|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-- 82 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDT---LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE-- 82 (226)
T ss_pred cCceEEEEEEEEEeCCCCCC---ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC--
Confidence 46789999999999753211 16999999999999999999999999999999999998 8999999998653211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccc--cccccccccccCCCc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCA--LMKNDAEIDDLKSSP 215 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~--~L~~~~~~~~~~~LS 215 (382)
....+ +.++|++|++.+|+ .|+.+|+.+........ ......+.++++.+ |+.+... +++.+||
T Consensus 83 -------~~~~~-~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LS 152 (226)
T cd03248 83 -------HKYLH-SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG-EKGSQLS 152 (226)
T ss_pred -------HHHHH-hhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCC
Confidence 11133 37999999998886 69999996432110000 00011234556666 7776554 8899999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|+|++|||++. +. .||+++++++
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~~sh~~~~--~~-~~d~i~~l~~ 223 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP---E-RRTVLVIAHRLST--VE-RADQILVLDG 223 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---C-CCEEEEEECCHHH--HH-hCCEEEEecC
Confidence 999999999999999999999999 999999999999999973 2 5899999997665 75 4889888764
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=316.74 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=164.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|+++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~~~-~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~------ 73 (272)
T PRK15056 5 AGIVVNDVTVTWRNGH-T----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ------ 73 (272)
T ss_pred ceEEEEeEEEEecCCc-E----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH------
Confidence 3688999999996332 2 5999999999999999999999999999999999998 89999999986421
Q ss_pred ehhhhhhhHhhhccceeeEeCCCC--ChhhhhhhHHHHHhh-hh---c-CccccccccccCccccccccccccccCCCcc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGF--NYNRVHEGLEELSSW-MS---E-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~--~~~tv~eni~~~~~~-~~---~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
..++..++|++|++.+. ...++.+++...... .. . .....+.+.++++.+|+.+..+ +++.+|||
T Consensus 74 -------~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSg 145 (272)
T PRK15056 74 -------ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-RQIGELSG 145 (272)
T ss_pred -------hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-CCcccCCH
Confidence 01223699999997642 224567776432110 00 0 0111234567788999986654 89999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--c
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--L 291 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--~ 291 (382)
|||||++|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..+||+++++++ +
T Consensus 146 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~---~~~g~tviivsH~~~~--~~~~~d~v~~~~G~i~ 220 (272)
T PRK15056 146 GQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL---RDEGKTMLVSTHNLGS--VTEFCDYTVMVKGTVL 220 (272)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEECCEEE
Confidence 99999999999999999999999 99999999999999998 3358999999996555 8889999888865 3
Q ss_pred cccccccee
Q 016817 292 GVSEISGVY 300 (382)
Q Consensus 292 ~~~~~~~v~ 300 (382)
..+++++++
T Consensus 221 ~~g~~~~~~ 229 (272)
T PRK15056 221 ASGPTETTF 229 (272)
T ss_pred eecCHHhcc
Confidence 344444444
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=312.01 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=168.8
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..++++++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.-..+....
T Consensus 7 ~~~~i~~~~~~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 7 AEDVFNISRLYLYINDKA------ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhhheeeeeEEEecCCce------eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccc
Confidence 456899999999996433 5999999999999999999999999999999999999 888887777422110010
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Cc-cccccccccCccccccc---cccccccCCCcc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GV-HHNQRCLRSDDCALMKN---DAEIDDLKSSPK 216 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~-~~~~~~~~~l~~~~L~~---~~~~~~~~~LSG 216 (382)
... ....+|. .++|++|++.+|+..|+.+|+.+....... .. ...+.+.++++.+++.+ ...++.+..|||
T Consensus 81 ~~~---~~~~~~~-~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~ 156 (257)
T PRK14246 81 FQI---DAIKLRK-EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSG 156 (257)
T ss_pred ccC---CHHHHhc-ceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCH
Confidence 000 1112344 899999999999888999999754321111 11 11234566778888853 123478999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
|||||++|||||+.+|++||||| +||+.++..+.+.|.++ . ++.|||+||||++. +..+||+++++++
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiilvsh~~~~--~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL---K-NEIAIVIVSHNPQQ--VARVADYVAFLYNGEL 230 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCcEEEEEECCHHH--HHHhCCEEEEEECCEE
Confidence 99999999999999999999999 99999999999999987 2 35899999996555 8889999999976
Q ss_pred ccccccccee
Q 016817 291 LGVSEISGVY 300 (382)
Q Consensus 291 ~~~~~~~~v~ 300 (382)
...++..+++
T Consensus 231 ~~~g~~~~~~ 240 (257)
T PRK14246 231 VEWGSSNEIF 240 (257)
T ss_pred EEECCHHHHH
Confidence 3344444444
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=337.33 Aligned_cols=209 Identities=10% Similarity=0.014 Sum_probs=167.5
Q ss_pred CchhHHHHHhhhccc-CCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCccc
Q 016817 64 DGLNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~-~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~ 140 (382)
..+++++|+++.|+. ++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~- 331 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIK----RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN- 331 (506)
T ss_pred CceEEEecCccccccccccc----cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC-
Confidence 457999999999953 1222 6999999999999999999999999999999999986 5999999998763211
Q ss_pred ceeehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHh-hhhc-C--c--cccccccccCcccccccccccccc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSS-WMSE-G--V--HHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~-~~~~-~--~--~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
. ....+. .+||++|++ .+++.+|+.+|+..... .+.. + . ...+++.++++.+++.....++++
T Consensus 332 -----~--~~~~~~-~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 403 (506)
T PRK13549 332 -----P--QQAIAQ-GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI 403 (506)
T ss_pred -----H--HHHHHC-CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc
Confidence 0 111233 799999995 47788999999965321 1100 0 0 112456778999999632234999
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ .++|.|||+||||++. +.++||++++|
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tvi~~sHd~~~--~~~~~d~v~~l 478 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL---VQQGVAIIVISSELPE--VLGLSDRVLVM 478 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH---HHCCCEEEEECCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3458999999996666 89999999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 479 ~~ 480 (506)
T PRK13549 479 HE 480 (506)
T ss_pred EC
Confidence 76
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=293.17 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=143.5
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. + +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 68 (173)
T cd03230 1 IEVRNLSKRYGKK--T----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP------ 68 (173)
T ss_pred CEEEEEEEEECCe--e----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch------
Confidence 3578899999642 2 5999999999999999999999999999999999998 8999999998654211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..+++ .++|+||++.+|+..|+.+|+. |||||+|||+||
T Consensus 69 ----~~~~~-~i~~~~q~~~~~~~~tv~~~~~------------------------------------LS~G~~qrv~la 107 (173)
T cd03230 69 ----EEVKR-RIGYLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALA 107 (173)
T ss_pred ----Hhhhc-cEEEEecCCccccCCcHHHHhh------------------------------------cCHHHHHHHHHH
Confidence 12343 8999999998888889888872 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++. ++|.|+|++|||+.. +..+||+++++++
T Consensus 108 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~---~~g~tiii~th~~~~--~~~~~d~i~~l~~ 170 (173)
T cd03230 108 QALLHDPELLILDEPTSGLDPESRREFWELLRELK---KEGKTILLSSHILEE--AERLCDRVAILNN 170 (173)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH---HCCCEEEEECCCHHH--HHHhCCEEEEEeC
Confidence 99999999999999 999999999999999983 348999999996665 8888999888764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=306.80 Aligned_cols=205 Identities=13% Similarity=0.032 Sum_probs=156.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++|++++|++.. +|+++||+|++|++++|+||||||||||+++|+|++ + ++|+|.++|+++.....
T Consensus 1 ~i~~~nl~~~~~~~~------~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~-- 72 (248)
T PRK09580 1 MLSIKDLHVSVEDKA------ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP-- 72 (248)
T ss_pred CeEEEEEEEEeCCee------eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH--
Confidence 467899999996432 599999999999999999999999999999999994 5 79999999986542211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCc---c---ccccccccCccccccccccccccC-C
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGV---H---HNQRCLRSDDCALMKNDAEIDDLK-S 213 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~---~---~~~~~~~~l~~~~L~~~~~~~~~~-~ 213 (382)
. ..++..++|++|++.+++..+..+++........ ... . ..+.+.++++.+++.+...++.+. +
T Consensus 73 ----~---~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (248)
T PRK09580 73 ----E---DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG 145 (248)
T ss_pred ----H---HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCC
Confidence 1 1222369999999888876665554432211100 000 0 012345567777885333446665 7
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLKICE 289 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~ll~ 289 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|+|||+||||++. +..+ +|++++++
T Consensus 146 LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l---~~~~~tiii~sH~~~~--~~~~~~d~i~~l~ 220 (248)
T PRK09580 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL---RDGKRSFIIVTHYQRI--LDYIKPDYVHVLY 220 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHhhhCCEEEEEE
Confidence 99999999999999999999999999 99999999999999988 3458999999997665 7776 79888886
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 221 ~ 221 (248)
T PRK09580 221 Q 221 (248)
T ss_pred C
Confidence 5
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=304.21 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=156.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.++++|++++|+.+..+ +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----- 72 (221)
T cd03244 2 DIEFKNVSLRYRPNLPP----VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG----- 72 (221)
T ss_pred cEEEEEEEEecCCCCcc----cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC-----
Confidence 36789999999754322 5999999999999999999999999999999999998 8999999998653221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSS 214 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~L 214 (382)
...+++ .++|+||++.+++ .|+.+|+.... . ...+++.++++.+++.+.+. ++++.+|
T Consensus 73 ----~~~~~~-~i~~~~q~~~l~~-~tv~enl~~~~-----~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~L 140 (221)
T cd03244 73 ----LHDLRS-RISIIPQDPVLFS-GTIRSNLDPFG-----E-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140 (221)
T ss_pred ----HHHHhh-hEEEECCCCcccc-chHHHHhCcCC-----C-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcC
Confidence 112343 8999999998876 69999985321 1 11223444455555543321 2678999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+||++|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|||++|||++. +.. ||+++++++
T Consensus 141 S~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~~-~d~i~~l~~ 212 (221)
T cd03244 141 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA---F-KDCTVLTIAHRLDT--IID-SDRILVLDK 212 (221)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCCHHH--Hhh-CCEEEEEEC
Confidence 9999999999999999999999999 99999999999999997 2 36899999996655 765 788888865
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=375.69 Aligned_cols=249 Identities=12% Similarity=0.077 Sum_probs=201.3
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhh-hh-------------------------------------hcCcC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMER-LA-------------------------------------LIAPD 64 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------------------~~~~~ 64 (382)
..+..|+..++.....++....+.+|+.++++..+ .. ..+..
T Consensus 1227 ~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (1560)
T PTZ00243 1227 MQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQA 1306 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCC
Confidence 45678889999999999999999999999885221 00 00012
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+.|+|+||+|+|+.+..+ +|+||||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.|+.+.+.
T Consensus 1307 G~I~f~nVsf~Y~~~~~~----vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l--- 1379 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPL----VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL--- 1379 (1560)
T ss_pred CeEEEEEEEEEeCCCCCc----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCH---
Confidence 469999999999765433 5999999999999999999999999999999999999 89999999998865432
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------C
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------K 212 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~ 212 (382)
..+|+ .||||+|++.+|+ .|+++||... ....++++.++++.+++.+++. ..| .
T Consensus 1380 ------~~LR~-~I~iVpQdp~LF~-gTIreNIdp~------~~~sdeeI~~Al~~a~l~~~I~-~lp~Gldt~vge~G~ 1444 (1560)
T PTZ00243 1380 ------RELRR-QFSMIPQDPVLFD-GTVRQNVDPF------LEASSAEVWAALELVGLRERVA-SESEGIDSRVLEGGS 1444 (1560)
T ss_pred ------HHHHh-cceEECCCCcccc-ccHHHHhCcc------cCCCHHHHHHHHHHCCChHHHh-hCcccccccccCCcC
Confidence 23675 9999999999998 6999999521 2334567888899888876543 322 4
Q ss_pred CCccceeeecceeeeehhH-HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNI-AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~-P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.||||||||++|||||+++ |+|||||| +||+++...|++.|++.. +++|+|+|+| +++++.. ||+|++|
T Consensus 1445 nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~----~~~TvI~IAH--Rl~ti~~-~DrIlVL 1517 (1560)
T PTZ00243 1445 NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF----SAYTVITIAH--RLHTVAQ-YDKIIVM 1517 (1560)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC----CCCEEEEEec--cHHHHHh-CCEEEEE
Confidence 5999999999999999996 89999999 999999999999999863 5799999999 6665764 7888888
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..|.+++++
T Consensus 1518 d~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1518 DHGAVAEMGSPRELV 1532 (1560)
T ss_pred ECCEEEEECCHHHHH
Confidence 76 5556665555
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=305.74 Aligned_cols=196 Identities=14% Similarity=0.144 Sum_probs=153.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.++++|++++|++.. . +|+|+||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~-~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----- 71 (229)
T cd03254 2 EIEFENVNFSYDEKK-P----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS----- 71 (229)
T ss_pred eEEEEEEEEecCCCC-c----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC-----
Confidence 367889999996422 1 6999999999999999999999999999999999999 8999999998653211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-----------cccccccccccCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-----------LMKNDAEIDDLKS 213 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~~ 213 (382)
...+++ .++|+||++.+|+ .|+.+|+.... .......+.++++.+ ++..... +++.+
T Consensus 72 ----~~~~~~-~i~~~~q~~~~~~-~tv~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 139 (229)
T cd03254 72 ----RKSLRS-MIGVVLQDTFLFS-GTIMENIRLGR-----PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGN 139 (229)
T ss_pred ----HHHHhh-hEEEecCCchhhh-hHHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhCcccccCHhh-cCCCc
Confidence 112343 7999999998887 49999985431 111112223333333 3333332 66799
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +|.|||+||||++. +. .||+++++++
T Consensus 140 LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~-~~d~i~~l~~ 212 (229)
T cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL---M-KGRTSIIIAHRLST--IK-NADKILVLDD 212 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh---c-CCCEEEEEecCHHH--Hh-hCCEEEEEeC
Confidence 99999999999999999999999999 99999999999999997 3 48999999996655 65 4899988876
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=343.85 Aligned_cols=239 Identities=13% Similarity=0.035 Sum_probs=189.6
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhh--hh---c-----------CcCchhHHHHHhhhcccCC--eeee
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL--AL---I-----------APDGLNELRHKFLSYRSGD--FWIP 84 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-----------~~~~~i~i~nvs~~y~~~~--~~v~ 84 (382)
.++.+|+.+++.....++.+..+.+|+.++++..+. .. + .....|+++||+|+|++.+ ..
T Consensus 278 ~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~-- 355 (555)
T TIGR01194 278 LYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEG-- 355 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcC--
Confidence 467899999999999999999999999999753111 00 0 0124689999999997531 11
Q ss_pred cCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 85 IGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 85 ~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
++|+|+||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.+.+. ..+|+ .++|++|+
T Consensus 356 -~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~---------~~~~~-~i~~v~q~ 424 (555)
T TIGR01194 356 -FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR---------DDYRD-LFSAIFAD 424 (555)
T ss_pred -ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---------HHHHh-hCcEEccC
Confidence 15999999999999999999999999999999999999 89999999998764331 22554 89999999
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc------CCCccceeeecceeeeehhHHHHHHH
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL------KSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
+.+|+ .|+++|.. +...++++.++++.+++.+... +.| ..||||||||++|||||+.+|++|||
T Consensus 425 ~~lf~-~ti~~n~~--------~~~~~~~~~~~~~~~~l~~~~~-~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 425 FHLFD-DLIGPDEG--------EHASLDNAQQYLQRLEIADKVK-IEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred hhhhh-hhhhcccc--------cchhHHHHHHHHHHcCCchhhc-ccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99997 67888741 1223455677888888886654 444 45999999999999999999999999
Q ss_pred Hh---cCCCCcchhhhhhcc-CccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 238 LK---AGDSKPLDATKRLFS-APGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 238 DE---~LD~~~~~~i~~~l~-~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|| +||+.+++.+.+.+. .+ +..|+|+|+|||++ +.+ ..||+|+++++
T Consensus 495 DE~ts~LD~~~~~~i~~~l~~~~---~~~~~tiiiisH~~--~~~-~~~d~i~~l~~ 545 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEELLPDL---KRQGKTIIIISHDD--QYF-ELADQIIKLAA 545 (555)
T ss_pred eCCccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeccH--HHH-HhCCEEEEEEC
Confidence 99 999999999988654 34 23589999999954 335 46888888875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=337.24 Aligned_cols=204 Identities=11% Similarity=0.087 Sum_probs=166.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|+++.| +. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++....
T Consensus 263 ~~~l~~~~l~~~~--~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~--- 331 (510)
T PRK09700 263 ETVFEVRNVTSRD--RK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS--- 331 (510)
T ss_pred CcEEEEeCccccC--CC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCC---
Confidence 4579999999976 22 5999999999999999999999999999999999998 8999999998653211
Q ss_pred eehhhhhhhHhhhccceeeEe---CCCCChhhhhhhHHHHHhh----hhc--C----ccccccccccCcccccc-ccccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYD---SRGFNYNRVHEGLEELSSW----MSE--G----VHHNQRCLRSDDCALMK-NDAEI 208 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~---~~l~~~~tv~eni~~~~~~----~~~--~----~~~~~~~~~~l~~~~L~-~~~~~ 208 (382)
.....++ .+||+||+ +.+++.+|+.+|+...... +.. + ....+.+.++++.+++. +.. +
T Consensus 332 -----~~~~~~~-~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~ 404 (510)
T PRK09700 332 -----PLDAVKK-GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-N 404 (510)
T ss_pred -----HHHHHHC-CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-c
Confidence 0112333 79999998 4688889999998653210 000 0 01123456788999996 454 4
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ .++|.|||+||||++. +..+||++
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tvi~vsHd~~~--~~~~~d~i 479 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL---ADDGKVILMVSSELPE--IITVCDRI 479 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHhhCCEE
Confidence 9999999999999999999999999999999 99999999999999998 3458999999997666 88999999
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
+++++
T Consensus 480 ~~l~~ 484 (510)
T PRK09700 480 AVFCE 484 (510)
T ss_pred EEEEC
Confidence 99876
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=305.33 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=153.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++.... ++|+|+||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 l~i~~l~~~~~~~~~~---~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~------ 71 (238)
T cd03249 1 IEFKNVSFRYPSRPDV---PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN------ 71 (238)
T ss_pred CeEEEEEEecCCCCCc---cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC------
Confidence 3578999999643211 15999999999999999999999999999999999999 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCc---------cc--cccccccccccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDD---------CA--LMKNDAEIDDLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~---------~~--~L~~~~~~~~~~~L 214 (382)
...+++ .++|++|++.+++ .|+.+|+.+.... . ..+...+.++ .+ ++.... ++++.+|
T Consensus 72 ---~~~~~~-~i~~~~q~~~~~~-~tv~e~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~L 140 (238)
T cd03249 72 ---LRWLRS-QIGLVSQEPVLFD-GTIAENIRYGKPD---A--TDEEVEEAAKKANIHDFIMSLPDGYDTLV-GERGSQL 140 (238)
T ss_pred ---HHHHHh-hEEEECCchhhhh-hhHHHHhhccCCC---C--CHHHHHHHHHHcChHHHHHhhccccceee-ccCCccC
Confidence 111333 7999999988887 6999998643211 0 0111111111 12 333333 3778999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +|.|||++|||++. +. .||+++++++
T Consensus 141 S~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~-~g~~vi~~sh~~~~--~~-~~d~v~~l~~ 212 (238)
T cd03249 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA---M-KGRTTIVIAHRLST--IR-NADLIAVLQN 212 (238)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCCHHH--Hh-hCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999997 3 58999999996655 76 7999998876
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=307.86 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=164.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+++++||++.|++. . +|+|+||+|++||+++|+||||||||||+++|+|+.. ++|+|.++|.++....
T Consensus 3 ~l~~~~v~~~~~~~--~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDDA--H----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCCe--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 46789999999642 2 5999999999999999999999999999999999863 5899999998764211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC--ccccccccccCcccccccc---ccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKND---AEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~~---~~~~~~~~L 214 (382)
......++ .++|+||++.+|+ .|+.+|+.+........ ....+.+.++++.+++.+. ..++++.+|
T Consensus 77 -------~~~~~~~~-~i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 147 (250)
T PRK14266 77 -------VDVVELRK-KVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGL 147 (250)
T ss_pred -------ccHHHHhh-heEEEecCCccCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccC
Confidence 01112344 8999999999888 59999996542111110 0112345566777776421 224789999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
|||||||++|||||+.+|++||||| +||+.++..+.++|+++ + ++.|||++|||++. +..+|++++++++
T Consensus 148 S~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~-~~~tiii~sh~~~~--~~~~~~~i~~l~~G 221 (250)
T PRK14266 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL---K-EDYTIVIVTHNMQQ--ATRVSKYTSFFLNG 221 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEECCHHH--HHhhcCEEEEEECC
Confidence 9999999999999999999999999 99999999999999998 2 37899999995555 8899999988765
Q ss_pred --ccccccccee
Q 016817 291 --LGVSEISGVY 300 (382)
Q Consensus 291 --~~~~~~~~v~ 300 (382)
...+++++++
T Consensus 222 ~i~~~g~~~~~~ 233 (250)
T PRK14266 222 EIIESGLTDQIF 233 (250)
T ss_pred eEEEeCCHHHHH
Confidence 3344444443
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=290.78 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=140.7
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++... +++++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+..
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 70 (173)
T cd03246 1 LEVENVSFRYPGAEPP----VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD------ 70 (173)
T ss_pred CEEEEEEEEcCCCCCc----ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC------
Confidence 3578999999653222 5999999999999999999999999999999999999 8999999998664321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...+++ .++|++|++.+|+ .|+.+|+ ||||||||++||
T Consensus 71 ---~~~~~~-~i~~~~q~~~~~~-~tv~~~l-------------------------------------LS~G~~qrv~la 108 (173)
T cd03246 71 ---PNELGD-HVGYLPQDDELFS-GSIAENI-------------------------------------LSGGQRQRLGLA 108 (173)
T ss_pred ---HHHHHh-heEEECCCCcccc-CcHHHHC-------------------------------------cCHHHHHHHHHH
Confidence 111343 8999999998887 4877765 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ +++|+|+|++|||++. +. .||++++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sh~~~~--~~-~~d~v~~l~~ 170 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAAL---KAAGATRIVIAHRPET--LA-SADRILVLED 170 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HH-hCCEEEEEEC
Confidence 99999999999999 99999999999999998 3358999999997654 64 7899888764
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=303.10 Aligned_cols=188 Identities=15% Similarity=0.073 Sum_probs=151.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----ccceeeeEeecCCCcccceeehhhhhhhHhhhccceee
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV 161 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~ 161 (382)
+|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++... ..+++.++|++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~------------~~~~~~i~~~~ 68 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL------------SIRGRHIATIM 68 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh------------hhhhheeEEEe
Confidence 4899999999999999999999999999999999987 499999999865321 12223799999
Q ss_pred EeCC--CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccc--cccccccCCCccceeeecceeeeehhHHHHHH
Q 016817 162 YDSR--GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKN--DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYK 236 (382)
Q Consensus 162 Q~~~--l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLL 236 (382)
|++. +++.+|+.+|+......... .....+++.++++.+++.+ ...++.+.+|||||||||+|||||+.+|++||
T Consensus 69 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vll 148 (230)
T TIGR02770 69 QNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLI 148 (230)
T ss_pred cCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 9974 45667898888543221111 1112345677888999973 22348899999999999999999999999999
Q ss_pred HHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 237 ALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 237 LDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..++|++++|++
T Consensus 149 LDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 201 (230)
T TIGR02770 149 ADEPTTDLDVVNQARVLKLLRELR--QLFGTGILLITHDLGV--VARIADEVAVMDD 201 (230)
T ss_pred EcCCccccCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999 999999999999999983 3348999999995554 8889999999976
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=336.92 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=160.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~----- 71 (490)
T PRK10938 3 SLQISQGTFRLSDTK------TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS----- 71 (490)
T ss_pred eEEEEeEEEEcCCee------ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC-----
Confidence 688999999996432 5999999999999999999999999999999999998 8999999887543211
Q ss_pred hhhhhhhHhhhccceeeEeCCC--CC------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRG--FN------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l--~~------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
. ...++ .+||++|++.+ +. .+++.+++... ....+++.++++.+++.+.. ++++.+|||
T Consensus 72 -~---~~~~~-~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~-~~~~~~LSg 138 (490)
T PRK10938 72 -F---EQLQK-LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-------VKDPARCEQLAQQFGITALL-DRRFKYLST 138 (490)
T ss_pred -H---HHHHH-HhceeccCcchhhcccchhhccccHHHhcccc-------hhHHHHHHHHHHHcCCHhhh-hCCcccCCH
Confidence 1 11233 69999998643 11 35666655311 11234567789999998665 499999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||+||||++. +.++||++++|++
T Consensus 139 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tvii~tH~~~~--~~~~~d~v~~l~~ 210 (490)
T PRK10938 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL---HQSGITLVLVLNRFDE--IPDFVQFAGVLAD 210 (490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhcCCeEEEEeCCHHH--HHhhCCEEEEEEC
Confidence 99999999999999999999999 99999999999999998 3358999999996665 8899999999976
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=297.37 Aligned_cols=191 Identities=12% Similarity=0.090 Sum_probs=153.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.+.++++|++++|+..... +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~~~l~~~~l~~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--- 76 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPP----VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP--- 76 (207)
T ss_pred CCeEEEEEEEEEeCCCCcc----cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC---
Confidence 3568899999999753222 6999999999999999999999999999999999999 8999999998653211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....|+ .++|+||++.+|+ .|+.+|+.... . ...+.+.++++ +. +++.+|||||+|||
T Consensus 77 ------~~~~~~-~i~~v~q~~~~~~-~tv~~~l~~~~-----~-~~~~~~~~~l~-------~~-~~~~~LS~G~~qrv 134 (207)
T cd03369 77 ------LEDLRS-SLTIIPQDPTLFS-GTIRSNLDPFD-----E-YSDEEIYGALR-------VS-EGGLNLSQGQRQLL 134 (207)
T ss_pred ------HHHHHh-hEEEEecCCcccC-ccHHHHhcccC-----C-CCHHHHHHHhh-------cc-CCCCcCCHHHHHHH
Confidence 112344 8999999998887 59999985321 1 11122223332 23 78899999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.++|+++ . .|.|+|++|||++. +.. ||+++++++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~th~~~~--~~~-~d~v~~l~~ 198 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREE---F-TNSTILTIAHRLRT--IID-YDKILVMDA 198 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCCHHH--Hhh-CCEEEEEEC
Confidence 99999999999999999 99999999999999997 3 48999999996665 765 799888875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=301.02 Aligned_cols=190 Identities=15% Similarity=0.096 Sum_probs=153.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
+.++|++++|+... +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------- 88 (224)
T cd03220 23 LGILGRKGEVGEFW------ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------- 88 (224)
T ss_pred hhhhhhhhhcCCeE------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------
Confidence 78999999996532 5999999999999999999999999999999999999 89999999985310
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
. .. ...+++..|+.+|+.......... ....+++.++++.+++.+... +++.+||||||||++|
T Consensus 89 ------~---~~-----~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~l 153 (224)
T cd03220 89 ------L---GL-----GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LPVKTYSSGMKARLAF 153 (224)
T ss_pred ------h---cc-----cccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHH
Confidence 0 11 112345689999997643211111 111234566788889986654 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. +.|.|||+||||++. +..++|+++++++
T Consensus 154 aral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~---~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 217 (224)
T cd03220 154 AIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL---KQGKTVILVSHDPSS--IKRLCDRALVLEK 217 (224)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---hCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 999999999999999983 348999999996555 8888999988875
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=309.02 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=162.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
...+.++++++.|+.. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGNF--M----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 4467788889999542 2 5999999999999999999999999999999999986 38999999987642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccc---cccccCCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA---EIDDLKSS 214 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~---~~~~~~~L 214 (382)
... ....+++ .++|+||++.+|+ +|+.+|+.+............+.+.++++.+++.+.+ .++++.+|
T Consensus 80 ~~~-------~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 150 (261)
T PRK14263 80 KGV-------DPVVVRR-YIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSL 150 (261)
T ss_pred ccc-------chHhhhh-ceEEEecCCcccc-ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence 110 1112343 7999999998885 9999999764321111111124566778888875322 23678899
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||+||++|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|+|++|||++. +..+||++++++
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~---~-~~~tii~isH~~~~--i~~~~d~v~~l~ 222 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL---K-KDYTIALVTHNMQQ--AIRVADTTAFFS 222 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHHhCCEEEEEe
Confidence 9999999999999999999999999 99999999999999998 3 36899999996555 888999999995
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=292.11 Aligned_cols=172 Identities=20% Similarity=0.157 Sum_probs=144.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. + +++++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 1 i~~~~l~~~~~~~--~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----- 69 (178)
T cd03229 1 LELKNVSKRYGQK--T----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED----- 69 (178)
T ss_pred CEEEEEEEEECCe--E----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch-----
Confidence 3578899999642 2 5999999999999999999999999999999999999 89999999986643210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
.....+ +.++|++|++.+|+..|+.+|+... ||||||||++||
T Consensus 70 --~~~~~~-~~i~~~~q~~~~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la 112 (178)
T cd03229 70 --ELPPLR-RRIGMVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALA 112 (178)
T ss_pred --hHHHHh-hcEEEEecCCccCCCCCHHHheeec----------------------------------CCHHHHHHHHHH
Confidence 011133 3899999999888878888877310 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|++|||++. +..+||++++|++
T Consensus 113 ~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 176 (178)
T cd03229 113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ--AQLGITVVLVTHDLDE--AARLADRVVVLRD 176 (178)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcCEEEEEeC
Confidence 99999999999999 999999999999999983 3337999999996655 8888999888753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=289.86 Aligned_cols=170 Identities=13% Similarity=0.070 Sum_probs=144.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++| + |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~~------~----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--- 69 (182)
T cd03215 3 PVLEVRGLSVKG------A----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP--- 69 (182)
T ss_pred cEEEEeccEEEe------e----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCH---
Confidence 368899999988 2 999999999999999999999999999999999999 89999999987643211
Q ss_pred ehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
. ...+ +.++|+||++ .+++..|+.+|+.... . |||||||
T Consensus 70 ---~--~~~~-~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-----~---------------------------LS~G~~q 111 (182)
T cd03215 70 ---R--DAIR-AGIAYVPEDRKREGLVLDLSVAENIALSS-----L---------------------------LSGGNQQ 111 (182)
T ss_pred ---H--HHHh-CCeEEecCCcccCcccCCCcHHHHHHHHh-----h---------------------------cCHHHHH
Confidence 1 1133 3899999985 4777789999985321 0 9999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|+|++|||++. +.++||+++++++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--~~~~~d~v~~l~~ 179 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL---ADAGKAVLLISSELDE--LLGLCDRILVMYE 179 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEecC
Confidence 9999999999999999999 99999999999999998 3358999999996544 8889999988864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=332.77 Aligned_cols=209 Identities=10% Similarity=0.002 Sum_probs=167.8
Q ss_pred CchhHHHHHhhhcccC-CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCccc
Q 016817 64 DGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~-~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~ 140 (382)
..+++++|++++|+.+ ... +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~- 329 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRN- 329 (500)
T ss_pred CceEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCC-
Confidence 3479999999999432 212 6999999999999999999999999999999999997 4999999998763211
Q ss_pred ceeehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh-hhc--Ccc---ccccccccCcccccccccccccc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW-MSE--GVH---HNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~-~~~--~~~---~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
....+|+ ++||++|++ .+++.+|+.+|+.+.... +.. ... .++.+.++++.+++.+...++++
T Consensus 330 -------~~~~~~~-~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 401 (500)
T TIGR02633 330 -------PAQAIRA-GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI 401 (500)
T ss_pred -------HHHHHhC-CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc
Confidence 0112343 899999996 588889999999653211 100 111 12356778999999643234999
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ .++|.|||+||||++. +.++||+++++
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tviivsHd~~~--~~~~~d~v~~l 476 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL---AQEGVAIIVVSSELAE--VLGLSDRVLVI 476 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3458999999997666 99999999998
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 477 ~~ 478 (500)
T TIGR02633 477 GE 478 (500)
T ss_pred EC
Confidence 65
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=370.58 Aligned_cols=248 Identities=13% Similarity=0.101 Sum_probs=199.9
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhhc-------------------------CcCchhHHHHHhhhccc
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALI-------------------------APDGLNELRHKFLSYRS 78 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~i~nvs~~y~~ 78 (382)
.+..++..+......+.....+.+|+.++.+.++.... +..+.|+++||+++|+.
T Consensus 1150 ~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~ 1229 (1490)
T TIGR01271 1150 NILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE 1229 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC
Confidence 45566777777777888888999999998876543110 11246999999999976
Q ss_pred CCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccc
Q 016817 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (382)
Q Consensus 79 ~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig 158 (382)
+..+ +|+|+||+|++||.+||+|+||||||||+++|.|+++++|+|.+||.++.+.+. ..+|+ +++
T Consensus 1230 ~~~~----vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~---------~~lR~-~is 1295 (1490)
T TIGR01271 1230 AGRA----VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTL---------QTWRK-AFG 1295 (1490)
T ss_pred CCcc----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCH---------HHHHh-ceE
Confidence 4433 699999999999999999999999999999999998889999999998764432 23665 899
Q ss_pred eeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeee
Q 016817 159 FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMV 227 (382)
Q Consensus 159 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAra 227 (382)
||+|+|.+|+ .|+++|+... ....++++.++++.+++.+.+. +.|. .||||||||++||||
T Consensus 1296 ~IpQdp~LF~-GTIR~NLdp~------~~~tdeei~~aL~~~~L~~~i~-~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1296 VIPQKVFIFS-GTFRKNLDPY------EQWSDEEIWKVAEEVGLKSVIE-QFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred EEeCCCccCc-cCHHHHhCcc------cCCCHHHHHHHHHHCCCHHHHH-hCccccccccccCCCcCCHHHHHHHHHHHH
Confidence 9999999998 7999999521 2234567888899888876544 3332 599999999999999
Q ss_pred ehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 228 VSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 228 L~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+++|+|||||| +||+.+...|++.|++.. .++|||+||| +++++.. +|+|++|++ +..+.+.+++
T Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~----~~~TvI~IaH--Rl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF----SNCTVILSEH--RVEALLE-CQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEec--CHHHHHh-CCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999 999999999999999863 5799999999 6666775 778888876 5556665555
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=291.77 Aligned_cols=175 Identities=18% Similarity=0.096 Sum_probs=148.1
Q ss_pred hhHHHHHhhhcccC----CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCc
Q 016817 66 LNELRHKFLSYRSG----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 66 ~i~i~nvs~~y~~~----~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~ 138 (382)
.++++|++++|+.. ..+ +|+++||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~----~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~- 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQ----LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK- 77 (194)
T ss_pred EEEEEeeEEEEecCCCccccc----ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch-
Confidence 46789999999752 122 699999999999999999999999999999999999 8 89999999986531
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
. .+++ .++|+||++.+|+.+|+.+|+.+... . .+|||||
T Consensus 78 --------~---~~~~-~i~~~~q~~~~~~~~t~~~~i~~~~~-~----------------------------~~LS~G~ 116 (194)
T cd03213 78 --------R---SFRK-IIGYVPQDDILHPTLTVRETLMFAAK-L----------------------------RGLSGGE 116 (194)
T ss_pred --------H---hhhh-eEEEccCcccCCCCCcHHHHHHHHHH-h----------------------------ccCCHHH
Confidence 0 1343 79999999999988999999854210 0 0899999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||++|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|+|++|||++. ++..+||+++++++
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~-~~~~~~d~v~~l~~ 187 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL---ADTGRTIICSIHQPSS-EIFELFDKLLLLSQ 187 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCchH-HHHHhcCEEEEEeC
Confidence 999999999999999999999 99999999999999998 3358999999996541 26778999988875
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=322.69 Aligned_cols=207 Identities=17% Similarity=0.072 Sum_probs=175.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..+.++++|++|+|+.-. ||++|||++.+||++||+|.||||||||+|+|+|.++ ++|+|.++|+.+.-.+
T Consensus 5 ~~~ll~~~~i~K~FggV~------AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~s-- 76 (500)
T COG1129 5 TPPLLELRGISKSFGGVK------ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSS-- 76 (500)
T ss_pred ccceeeeecceEEcCCce------eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCC--
Confidence 345789999999997544 7999999999999999999999999999999999999 8999999999654221
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC----ccccccccccCccccccccccccccCCCcc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG----VHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~----~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
....+...|++|+|+..|+|++||.||+........ .+ ....+++.++++.+++.... +.++.+||+
T Consensus 77 -------p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~-~~~v~~Lsi 148 (500)
T COG1129 77 -------PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP-DTLVGDLSI 148 (500)
T ss_pred -------HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCCh-hhhhhhCCH
Confidence 111233489999999999999999999964432211 11 11234566788888885444 489999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||.|+|||||..++++||||| +|+......+++.++++ +++|.+||+||| +++++.++||+|.+|++
T Consensus 149 aqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~L---k~~Gv~ii~ISH--rl~Ei~~i~DritVlRD 220 (500)
T COG1129 149 AQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL---KAQGVAIIYISH--RLDEVFEIADRITVLRD 220 (500)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEcC--cHHHHHHhcCEEEEEeC
Confidence 99999999999999999999999 99999999999999999 678999999999 78889999999999988
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=313.48 Aligned_cols=215 Identities=16% Similarity=0.153 Sum_probs=165.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
+.+|+++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~~~~~------iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDH------ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEEEeCCee------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45799999999996432 6999999999999999999999999999999999984 59999999987642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc----------Cc----cccccccccCcccccc
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE----------GV----HHNQRCLRSDDCALMK 203 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----------~~----~~~~~~~~~l~~~~L~ 203 (382)
.. .....+|+ .++|+||++.+|+ .|+.+|+.+....... .. ..++.+.++++.+++.
T Consensus 117 ~~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 187 (305)
T PRK14264 117 DG-------VNLVELRK-RVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW 187 (305)
T ss_pred cc-------ccHHHHhh-ceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc
Confidence 11 01122444 8999999998888 5999999764321100 00 0123455667777764
Q ss_pred ----ccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCC
Q 016817 204 ----NDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLS 276 (382)
Q Consensus 204 ----~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~ 276 (382)
+.. ++++.+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. + +.|||+||||++.
T Consensus 188 ~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~---~-~~tiiivtH~~~~- 261 (305)
T PRK14264 188 DEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA---E-EYTVVVVTHNMQQ- 261 (305)
T ss_pred hhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---c-CCEEEEEEcCHHH-
Confidence 233 48899999999999999999999999999999 999999999999999983 2 4899999996655
Q ss_pred hhhhhhhhh-hhhhh---ccccccccee
Q 016817 277 TEERLDARL-KICEY---LGVSEISGVY 300 (382)
Q Consensus 277 ~~~~~~d~v-~ll~~---~~~~~~~~v~ 300 (382)
+..+||++ +++++ +..+++++++
T Consensus 262 -i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 262 -AARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred -HHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 88889986 56665 3344444443
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=338.49 Aligned_cols=236 Identities=15% Similarity=0.064 Sum_probs=184.6
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhhh---hc---CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---LI---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
+..|+.+++.....+..+..+.+|+.++++.++.+ .. +..+.++++||+|+|+++. + +|+|+||+|++|
T Consensus 275 ~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~----~l~~i~~~i~~G 349 (547)
T PRK10522 275 LRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNG-F----SVGPINLTIKRG 349 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCCCC-e----EEecceEEEcCC
Confidence 55799999999999999999999999987543211 10 1123689999999997432 2 599999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
++++|+||||||||||+++|+|+++ ++|+|.+||+++.+.. ...+|+ +++|++|++.+|+ .|+++|-
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---------~~~~~~-~i~~v~q~~~lf~-~ti~~n~- 417 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ---------PEDYRK-LFSAVFTDFHLFD-QLLGPEG- 417 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC---------HHHHhh-heEEEecChhHHH-Hhhcccc-
Confidence 9999999999999999999999999 8999999999875432 122554 8999999999987 6777761
Q ss_pred HHHhhhhcCccccccccccCcccccccccc--cc--ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhh
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAE--ID--DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATK 250 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~--~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~ 250 (382)
....++.+.++++.+++.+... +. ....||||||||++|||||+++|++||||| +||++++..+.
T Consensus 418 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 418 --------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred --------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 1122344556677777764432 01 135799999999999999999999999999 99999999999
Q ss_pred hhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 251 RLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 251 ~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+.+.. ++.++|+|+|||++ +.+ ..+|+++++++
T Consensus 490 ~~l~~~~--~~~~~tvi~itH~~--~~~-~~~d~i~~l~~ 524 (547)
T PRK10522 490 QVLLPLL--QEMGKTIFAISHDD--HYF-IHADRLLEMRN 524 (547)
T ss_pred HHHHHHH--HhCCCEEEEEEech--HHH-HhCCEEEEEEC
Confidence 9887652 23489999999954 334 46888888875
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=306.10 Aligned_cols=209 Identities=16% Similarity=0.071 Sum_probs=163.1
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
+..++|+++|++++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|.++
T Consensus 12 ~~~~~l~~~~l~~~~~~~--~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGY--Q----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred CCCceEEEEEEEEEECCe--e----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 456789999999999643 2 5999999999999999999999999999999999985 489999999765
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccc----cccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMK----NDAEID 209 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~----~~~~~~ 209 (382)
..... ......+++ .++|++|++.+|+. |+.+|+........... ..++.+.++++.+++. +.. ++
T Consensus 86 ~~~~~-----~~~~~~~~~-~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~ 157 (265)
T PRK14252 86 NILSP-----EVDPIEVRM-RISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL-GD 157 (265)
T ss_pred ccccc-----ccCHHHHhc-cEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH-hC
Confidence 31100 001112343 79999999999984 99999965421111000 1123445566666653 233 47
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
.+.+|||||+|||+|||||+.+|++||||| +||+.++..+.+.|+++. .+.|||+||||++. +..+||+++
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~tiiivth~~~~--~~~~~d~i~ 231 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK----NKVTILIVTHNMQQ--AARVSDYTA 231 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----hCCEEEEEecCHHH--HHHhCCEEE
Confidence 889999999999999999999999999999 999999999999999983 36899999995554 888999999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
++++
T Consensus 232 ~l~~ 235 (265)
T PRK14252 232 YMYM 235 (265)
T ss_pred EEEC
Confidence 9986
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=300.93 Aligned_cols=195 Identities=14% Similarity=0.152 Sum_probs=152.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~-~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~------ 69 (236)
T cd03253 1 IEFENVTFAYDPGR-P----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT------ 69 (236)
T ss_pred CEEEEEEEEeCCCC-c----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC------
Confidence 35788999996322 1 5999999999999999999999999999999999999 8999999998654221
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccC---------ccc--cccccccccccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSD---------DCA--LMKNDAEIDDLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l---------~~~--~L~~~~~~~~~~~L 214 (382)
...+++ .++|++|++.+|+ .|+.+|+.+... .. ....+.+++ +.+ ++..... +.+.+|
T Consensus 70 ---~~~~~~-~i~~~~q~~~~~~-~tv~~nl~~~~~----~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~L 138 (236)
T cd03253 70 ---LDSLRR-AIGVVPQDTVLFN-DTIGYNIRYGRP----DA-TDEEVIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKL 138 (236)
T ss_pred ---HHHHHh-hEEEECCCChhhc-chHHHHHhhcCC----CC-CHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcC
Confidence 112343 7999999998886 799999964321 00 111111111 222 3333333 678899
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|.++ .+ |.|||++||+++. +.. ||+++++++
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~~-~~tiii~sh~~~~--~~~-~d~~~~l~~ 210 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV---SK-GRTTIVIAHRLST--IVN-ADKIIVLKD 210 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh---cC-CCEEEEEcCCHHH--HHh-CCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 34 8999999996655 754 889988876
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=291.54 Aligned_cols=184 Identities=13% Similarity=0.099 Sum_probs=151.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.. . ++ ++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~--~----l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----- 68 (195)
T PRK13541 1 MLSLHQLQFNIEQK--N----LF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----- 68 (195)
T ss_pred CeEEEEeeEEECCc--E----EE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-----
Confidence 46789999999542 1 35 4999999999999999999999999999999999 8999999998653210
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
+ ..++|++|++.+++..|+.+|+.+..... ...+.+.++++.+++.+... +++.+||||||||++|
T Consensus 69 --------~-~~~~~~~~~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rl~l 134 (195)
T PRK13541 69 --------K-PYCTYIGHNLGLKLEMTVFENLKFWSEIY----NSAETLYAAIHYFKLHDLLD-EKCYSLSSGMQKIVAI 134 (195)
T ss_pred --------h-hhEEeccCCcCCCccCCHHHHHHHHHHhc----ccHHHHHHHHHHcCCHhhhc-cChhhCCHHHHHHHHH
Confidence 1 25899999887777799999997543111 12345667788889886554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
|||++.+|++||||| +||+.++..+.+.|++. .+.|.|+|++|||++. +..
T Consensus 135 a~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--i~~ 188 (195)
T PRK13541 135 ARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMK---ANSGGIVLLSSHLESS--IKS 188 (195)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCccc--cch
Confidence 999999999999999 99999999999999865 3468999999997665 654
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=290.54 Aligned_cols=184 Identities=12% Similarity=0.012 Sum_probs=150.0
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc----ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~i~G~~i~~~~ 139 (382)
.+.++||+|.|+.+ +.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIP----ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccCCCCce----eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 46789999999864 222 6999999999999999999999999999999999986 4999999998654211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
...+ +.++|++|++.+|+.+|+.+|+.+... . . . ++++.+|||||+
T Consensus 79 ----------~~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~-~----------~-----------~-~~~~~~LS~Ge~ 124 (202)
T cd03233 79 ----------EKYP-GEIIYVSEEDVHFPTLTVRETLDFALR-C----------K-----------G-NEFVRGISGGER 124 (202)
T ss_pred ----------hhhc-ceEEEEecccccCCCCcHHHHHhhhhh-h----------c-----------c-ccchhhCCHHHH
Confidence 1133 379999999988988999999964310 0 0 2 378899999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.+.|+|+++|+ ..+++.++||++++|++
T Consensus 125 qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~~t~ii~~~h-~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA--DVLKTTTFVSLYQ-ASDEIYDLFDKVLVLYE 195 (202)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhCCCEEEEEEcC-CHHHHHHhCCeEEEEEC
Confidence 99999999999999999999 999999999999999983 3336676666552 22347788999998876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=277.95 Aligned_cols=224 Identities=14% Similarity=0.070 Sum_probs=181.7
Q ss_pred chhHHHHHhhhcccCCee---eecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccc
Q 016817 65 GLNELRHKFLSYRSGDFW---IPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~---v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~ 140 (382)
..++++|++|+|.....- -+..+++.|||++++|+.+||+|.||||||||.|+|+|.++ ++|+|.|||+.+.-
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~--- 79 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF--- 79 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc---
Confidence 478999999988643211 01237999999999999999999999999999999999999 89999999986521
Q ss_pred ceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCCCcc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
.+. .+|.+.|-|+||||+ +.|.+.+.+.++....... ......+++.+-++++||-+.-.+-+|+.||-
T Consensus 80 ------~Dy-~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~ 152 (267)
T COG4167 80 ------GDY-SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAP 152 (267)
T ss_pred ------cch-HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCc
Confidence 111 256678999999974 5677777666654332111 11223456777889999865545699999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
|||||||+||||..+|+|+|.|| +||...+.++.+++.++ +.+.|.+-|+|+.++.+ +..++|.|++|++
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeL--Qek~GiSyiYV~QhlG~--iKHi~D~viVM~EG~v 228 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLEL--QEKQGISYIYVTQHIGM--IKHISDQVLVMHEGEV 228 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHH--HHHhCceEEEEechhhH--hhhhcccEEEEecCce
Confidence 99999999999999999999999 99999999999999999 46789999999997777 9999999999987
Q ss_pred cccccccceeeE
Q 016817 291 LGVSEISGVYDI 302 (382)
Q Consensus 291 ~~~~~~~~v~~~ 302 (382)
+..|++.++|..
T Consensus 229 vE~G~t~~v~a~ 240 (267)
T COG4167 229 VERGSTADVLAS 240 (267)
T ss_pred eecCChhhhhcC
Confidence 788888888854
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=287.85 Aligned_cols=174 Identities=14% Similarity=0.072 Sum_probs=145.8
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCccc
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~ 140 (382)
.++++|+++.|+++ +.+ +|+++||++++|++++|+||||||||||+++|+|++ + ++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQ----LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceE----eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----
Confidence 57889999999642 122 599999999999999999999999999999999985 3 6999999998542
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+++ .++|++|++.+|+.+|+.+|+.+... . + +|||||+|
T Consensus 75 ---------~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~-------------------------~-~---~LSgGe~q 115 (192)
T cd03232 75 ---------KNFQR-STGYVEQQDVHSPNLTVREALRFSAL-------------------------L-R---GLSVEQRK 115 (192)
T ss_pred ---------HHhhh-ceEEecccCccccCCcHHHHHHHHHH-------------------------H-h---cCCHHHhH
Confidence 11333 79999999988888999999964210 0 0 89999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..+++.|+++ ++.|.|+|++|||++. ++..+||++++|++
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiiivtH~~~~-~~~~~~d~i~~l~~ 184 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL---ADSGQAILCTIHQPSA-SIFEKFDRLLLLKR 184 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHH---HHcCCEEEEEEcCChH-HHHhhCCEEEEEcC
Confidence 9999999999999999999 99999999999999997 3358999999996541 25678899888853
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=327.71 Aligned_cols=200 Identities=13% Similarity=0.063 Sum_probs=163.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|+++ . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 256 ~~l~~~~l~~-----~------~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~---- 320 (501)
T PRK10762 256 VRLKVDNLSG-----P------GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS---- 320 (501)
T ss_pred cEEEEeCccc-----C------CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC----
Confidence 4788888874 1 4999999999999999999999999999999999998 8999999998764221
Q ss_pred ehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh-hhc--C----ccccccccccCcccccc-ccccccccC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW-MSE--G----VHHNQRCLRSDDCALMK-NDAEIDDLK 212 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~-~~~--~----~~~~~~~~~~l~~~~L~-~~~~~~~~~ 212 (382)
.. ...|+ .+||++|++ .+++.+|+.+|+.+.... ... + ....+++.++++.+++. +.. ++++.
T Consensus 321 --~~--~~~~~-~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 394 (501)
T PRK10762 321 --PQ--DGLAN-GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-EQAIG 394 (501)
T ss_pred --HH--HHHHC-CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-cCchh
Confidence 01 11333 799999996 578889999999753211 100 0 01124567789999995 444 59999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ .++|.|||+||||++. +..+||++++++
T Consensus 395 ~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tviivtHd~~~--~~~~~d~v~~l~ 469 (501)
T PRK10762 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF---KAEGLSIILVSSEMPE--VLGMSDRILVMH 469 (501)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 99999999999999998 3358999999996665 899999999997
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 470 ~ 470 (501)
T PRK10762 470 E 470 (501)
T ss_pred C
Confidence 6
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=291.07 Aligned_cols=173 Identities=17% Similarity=0.091 Sum_probs=143.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++|++++|++. . +|+|+||++++||+++|+||||||||||+++|+|+. + ++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~--- 71 (200)
T cd03217 1 LEIKDLHVSVGGK--E----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP--- 71 (200)
T ss_pred CeEEEEEEEeCCE--E----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCH---
Confidence 3578999999642 2 599999999999999999999999999999999994 5 79999999987653221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.. ..+ ..++|+||++.+++..++.+++ . +.+.+|||||+||++
T Consensus 72 ---~~--~~~-~~i~~v~q~~~~~~~~~~~~~l------------------------------~-~~~~~LS~G~~qrv~ 114 (200)
T cd03217 72 ---EE--RAR-LGIFLAFQYPPEIPGVKNADFL------------------------------R-YVNEGFSGGEKKRNE 114 (200)
T ss_pred ---HH--Hhh-CcEEEeecChhhccCccHHHHH------------------------------h-hccccCCHHHHHHHH
Confidence 11 112 2699999998888766665544 1 334689999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh-hhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER-LDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~-~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ .+.+.|||++||+++. +.. ++|+++++++
T Consensus 115 laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~---~~~~~tiii~sh~~~~--~~~~~~d~i~~l~~ 180 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL---REEGKSVLIITHYQRL--LDYIKPDRVHVLYD 180 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhhCCEEEEEEC
Confidence 9999999999999999 99999999999999998 3358999999996665 777 6999998876
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=289.19 Aligned_cols=169 Identities=15% Similarity=0.137 Sum_probs=140.6
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|+.. . +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 ~~~~l~~~~~~~--~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~------ 68 (180)
T cd03214 1 EVENLSVGYGGR--T----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP------ 68 (180)
T ss_pred CeeEEEEEECCe--e----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCH------
Confidence 467899999642 2 5999999999999999999999999999999999998 89999999987642211
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
. .+++ .++|+|| +++.+++.+... +.+.+||||||||++|||
T Consensus 69 ~---~~~~-~i~~~~q---------------------------------~l~~~gl~~~~~-~~~~~LS~G~~qrl~lar 110 (180)
T cd03214 69 K---ELAR-KIAYVPQ---------------------------------ALELLGLAHLAD-RPFNELSGGERQRVLLAR 110 (180)
T ss_pred H---HHHH-HHhHHHH---------------------------------HHHHcCCHhHhc-CCcccCCHHHHHHHHHHH
Confidence 1 1333 6889888 334456665544 789999999999999999
Q ss_pred eehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 227 VVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 227 aL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.+|++||||| +||+.++..+.+.|+++. ++.+.|+|++||+++. +.++||+++++++
T Consensus 111 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sh~~~~--~~~~~d~~~~l~~ 173 (180)
T cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--RERGKTVVMVLHDLNL--AARYADRVILLKD 173 (180)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999 999999999999999983 3237899999996555 8888999998875
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=291.71 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=144.3
Q ss_pred hHHHHHhhhcccCC---eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 67 i~i~nvs~~y~~~~---~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
++++||+++|+++. .. +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~----il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSF----TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccc----eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----------
Confidence 45789999996542 12 5999999999999999999999999999999999999 899999987
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccc-----------cccccccccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-----------MKNDAEIDDL 211 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~ 211 (382)
.++|++|++.+|+ .|+.+|+.+... . ..+...++++.++ +..... +.+
T Consensus 67 -------------~i~~~~q~~~l~~-~t~~enl~~~~~-----~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 125 (204)
T cd03250 67 -------------SIAYVSQEPWIQN-GTIRENILFGKP-----F-DEERYEKVIKACALEPDLEILPDGDLTEIG-EKG 125 (204)
T ss_pred -------------EEEEEecCchhcc-CcHHHHhccCCC-----c-CHHHHHHHHHHcCcHHHHHhccCcccceec-CCC
Confidence 3789999999886 799999964311 0 0111222222222 222233 668
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhh-hccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKR-LFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~-~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
.+||||||||++|||||+.+|+++|||| +||+.++..+.+ ++++. .+.|.|||++||++.. +.. +|++++
T Consensus 126 ~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~---~~~~~tvi~~sh~~~~--~~~-~d~i~~ 199 (204)
T cd03250 126 INLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGL---LLNNKTRILVTHQLQL--LPH-ADQIVV 199 (204)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh---ccCCCEEEEEeCCHHH--Hhh-CCEEEE
Confidence 8999999999999999999999999999 999999999988 56665 2348999999996655 776 888887
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 200 l~~ 202 (204)
T cd03250 200 LDN 202 (204)
T ss_pred EeC
Confidence 753
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=363.51 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=177.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.+.+|+++|++|+|+++.+. +|+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++...
T Consensus 1934 ~~~~L~v~nLsK~Y~~~~~~----aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--- 2006 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGTSSP----AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--- 2006 (2272)
T ss_pred CCceEEEEEEEEEECCCCce----EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch---
Confidence 45689999999999753222 6999999999999999999999999999999999999 899999999976321
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
....|+ .|||++|++.+++.+|++|++.+.+...+.. ...++.+.++++.++|.+.. ++++.+|||||||
T Consensus 2007 -------~~~~r~-~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-dk~~~~LSGGqKq 2077 (2272)
T TIGR01257 2007 -------ISDVHQ-NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-DRLAGTYSGGNKR 2077 (2272)
T ss_pred -------HHHHhh-hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHH
Confidence 112343 7999999999999999999998654332211 11124466789999998765 4999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+||+||+.+|+||+||| +|||.+++.+++.|+++ +++|+|||++||+++. +..+||++++|++ +..+
T Consensus 2078 RLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l---~~~g~TIILtTH~mee--~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI---IREGRAVVLTSHSMEE--CEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999 99999999999999998 3358999999995554 9999999999986 3444
Q ss_pred cccc
Q 016817 295 EISG 298 (382)
Q Consensus 295 ~~~~ 298 (382)
++.+
T Consensus 2153 s~q~ 2156 (2272)
T TIGR01257 2153 TIQH 2156 (2272)
T ss_pred CHHH
Confidence 4433
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=293.67 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=150.0
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
.+.|++++|+.+. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++......
T Consensus 2 ~~~~~~~~~~~~~-~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~----- 71 (218)
T cd03290 2 QVTNGYFSWGSGL-A----TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE----- 71 (218)
T ss_pred eeeeeEEecCCCC-c----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccc-----
Confidence 4567888886442 2 6999999999999999999999999999999999998 899999999865432110
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccc----------cccccCCCcc
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA----------EIDDLKSSPK 216 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSG 216 (382)
......| +.++|++|++.+|+ .|+.+|+..... . ..+...++++.+++.+.+ .++++.+|||
T Consensus 72 ~~~~~~~-~~i~~~~q~~~~~~-~t~~~nl~~~~~-----~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~ 143 (218)
T cd03290 72 ATRSRNR-YSVAYAAQKPWLLN-ATVEENITFGSP-----F-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSG 143 (218)
T ss_pred ccchhhc-ceEEEEcCCCcccc-ccHHHHHhhcCc-----C-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCH
Confidence 0011123 37999999998885 799999964321 0 111223344444443211 1267899999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhh--hccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKR--LFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~--~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||||+|||||+.+|++||||| +||+.++..+++ +++.+ ++.|.|+|++||+++. +. .||++++++
T Consensus 144 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~---~~~~~tii~~sH~~~~--~~-~~d~i~~l~ 215 (218)
T cd03290 144 GQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL---QDDKRTLVLVTHKLQY--LP-HADWIIAMK 215 (218)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH---hcCCCEEEEEeCChHH--Hh-hCCEEEEec
Confidence 99999999999999999999999 999999999998 56655 3458999999997665 65 588887775
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=338.42 Aligned_cols=230 Identities=13% Similarity=0.052 Sum_probs=185.5
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------------------------------cCcCchhHHHHH
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------------------------------IAPDGLNELRHK 72 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~i~i~nv 72 (382)
++..|+..++....+++.+.++.+|+.++++.++... ....++|+++||
T Consensus 378 ~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv 457 (659)
T TIGR00954 378 KAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENI 457 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEee
Confidence 4588999999999999999999999999998643200 012346899999
Q ss_pred hhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhh
Q 016817 73 FLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNV 151 (382)
Q Consensus 73 s~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~ 151 (382)
++.|+++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+++.
T Consensus 458 ~~~~~~~~-~----il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~------------------ 514 (659)
T TIGR00954 458 PLVTPNGD-V----LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK------------------ 514 (659)
T ss_pred EEECCCCC-e----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC------------------
Confidence 99996443 2 5999999999999999999999999999999999999 8999987542
Q ss_pred HhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccc---------cCCCccceee
Q 016817 152 MRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDD---------LKSSPKYVLR 220 (382)
Q Consensus 152 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~~LSGGqkQ 220 (382)
+.++|++|++.+|+. |+++|+.+...... .....++++.++++.+++.+.+. ++ +.+|||||||
T Consensus 515 ---~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~~g~~~~~~~~~~LSgGqkQ 589 (659)
T TIGR00954 515 ---GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILE-REGGWSAVQDWMDVLSGGEKQ 589 (659)
T ss_pred ---CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHh-hcCCcccccccccCCCHHHHH
Confidence 379999999998885 99999965321100 01122345677888888876544 43 3689999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||||+++|++||||| +||+.++..+.+.+++ .|.|+|+|||+++. + +.||+++++++
T Consensus 590 Rl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~------~~~tvI~isH~~~~--~-~~~d~il~l~~ 653 (659)
T TIGR00954 590 RIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE------FGITLFSVSHRKSL--W-KYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH------cCCEEEEEeCchHH--H-HhCCEEEEEeC
Confidence 9999999999999999999 9999999999998876 37899999996554 5 56888888864
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=284.12 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=141.7
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+....+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------- 69 (178)
T cd03247 1 LSINNVSFSYPEQEQQ----VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL------- 69 (178)
T ss_pred CEEEEEEEEeCCCCcc----ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-------
Confidence 3578899999654212 5999999999999999999999999999999999999 899999999854210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...+++ .++|++|++.+|+ .|+++|+ +.+|||||+||++||
T Consensus 70 ---~~~~~~-~i~~~~q~~~~~~-~tv~~~i----------------------------------~~~LS~G~~qrv~la 110 (178)
T cd03247 70 ---EKALSS-LISVLNQRPYLFD-TTLRNNL----------------------------------GRRFSGGERQRLALA 110 (178)
T ss_pred ---HHHHHh-hEEEEccCCeeec-ccHHHhh----------------------------------cccCCHHHHHHHHHH
Confidence 112343 7999999988876 6877765 678999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+++.|+++ . ++.|||++|||++. +. .+|+++++++
T Consensus 111 ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~-~~d~~~~l~~ 171 (178)
T cd03247 111 RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---L-KDKTLIWITHHLTG--IE-HMDKILFLEN 171 (178)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---c-CCCEEEEEecCHHH--HH-hCCEEEEEEC
Confidence 99999999999999 99999999999999997 3 47899999997665 65 5888888865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=283.20 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=139.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++... +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~~~----~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~------ 70 (171)
T cd03228 1 IEFKNVSFSYPGRPKP----VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD------ 70 (171)
T ss_pred CEEEEEEEEcCCCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC------
Confidence 3578899999754212 6999999999999999999999999999999999999 8999999998653221
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...+++ .++|+||++.+|+ .|+.+|+ |||||||||+||
T Consensus 71 ---~~~~~~-~i~~~~~~~~~~~-~t~~e~l-------------------------------------LS~G~~~rl~la 108 (171)
T cd03228 71 ---LESLRK-NIAYVPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIA 108 (171)
T ss_pred ---HHHHHh-hEEEEcCCchhcc-chHHHHh-------------------------------------hCHHHHHHHHHH
Confidence 111333 7999999988776 5777665 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ . +++|+|++|||++. +.. ||+++++++
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~~-~d~~~~l~~ 169 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRAL---A-KGKTVIVIAHRLST--IRD-ADRIIVLDD 169 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---c-CCCEEEEEecCHHH--HHh-CCEEEEEcC
Confidence 99999999999999 99999999999999998 3 36899999997665 766 888887753
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=328.40 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=159.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++|++++|++. + +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.
T Consensus 1 ml~i~~ls~~~~~~--~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------- 63 (530)
T PRK15064 1 MLSTANITMQFGAK--P----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------- 63 (530)
T ss_pred CEEEEEEEEEeCCc--E----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------
Confidence 46789999999643 2 5999999999999999999999999999999999998 8999999874
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-----------hc----------------------Cccccc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-----------SE----------------------GVHHNQ 191 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-----------~~----------------------~~~~~~ 191 (382)
..+||++|++.+++.+|+.+|+....... .. +...++
T Consensus 64 ----------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 64 ----------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred ----------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 26899999998888899999986532100 00 001123
Q ss_pred cccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEE
Q 016817 192 RCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILI 268 (382)
Q Consensus 192 ~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIi 268 (382)
++.++++.+|+.+...++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|++ .|.|||+
T Consensus 134 ~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiii 207 (530)
T PRK15064 134 RAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMII 207 (530)
T ss_pred HHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEE
Confidence 466788899997544447889999999999999999999999999999 9999999999999864 4789999
Q ss_pred EecCCCCChhhhhhhhhhhhhh
Q 016817 269 LTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 269 iTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||++. +..+||+++++++
T Consensus 208 vsHd~~~--~~~~~d~i~~l~~ 227 (530)
T PRK15064 208 ISHDRHF--LNSVCTHMADLDY 227 (530)
T ss_pred EeCCHHH--HHhhcceEEEEeC
Confidence 9997666 8899999999986
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=332.19 Aligned_cols=219 Identities=17% Similarity=0.123 Sum_probs=175.2
Q ss_pred chhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 65 GLNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.+++++|++++|+.+. .. +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~-- 76 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVE----VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLD-- 76 (648)
T ss_pred cEEEEeeEEEEeCCCCCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCC--
Confidence 4789999999996422 22 5999999999999999999999999999999999999 8999999999765322
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+...++++.++|+||++.+|++.|+.||+.+.....+.. ...++++.++++.+|+.+.. ++.+.+|||||+|
T Consensus 77 ----~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-~~~~~~LS~Gq~q 151 (648)
T PRK10535 77 ----ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRV-EYQPSQLSGGQQQ 151 (648)
T ss_pred ----HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-cCCcccCCHHHHH
Confidence 22222233348999999999999899999997643211111 11234567788899998665 4999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|++|||||+.+|++||||| +||+.+++.+.++|+++ +++|.|+|++||+++. +. .||+++++++ +..+
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l---~~~g~tilivsH~~~~--~~-~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL---RDRGHTVIIVTHDPQV--AA-QAERVIEIRDGEIVRNP 225 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEECCCHHH--HH-hCCEEEEEECCEEEeec
Confidence 9999999999999999999 99999999999999998 3358999999997665 65 5888888887 4445
Q ss_pred ccccee
Q 016817 295 EISGVY 300 (382)
Q Consensus 295 ~~~~v~ 300 (382)
++.+..
T Consensus 226 ~~~~~~ 231 (648)
T PRK10535 226 PAQEKV 231 (648)
T ss_pred Cccccc
Confidence 544443
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=280.02 Aligned_cols=158 Identities=19% Similarity=0.103 Sum_probs=137.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|+.+. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~-~----~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------ 63 (166)
T cd03223 1 IELENLSLATPDGR-V----LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------ 63 (166)
T ss_pred CEEEEEEEEcCCCC-e----eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------
Confidence 35789999996432 2 5999999999999999999999999999999999999 8999999764
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
+.++|++|++.+++ .|+.+|+.+. .+.+||||||||++||
T Consensus 64 ---------~~i~~~~q~~~~~~-~tv~~nl~~~------------------------------~~~~LS~G~~~rv~la 103 (166)
T cd03223 64 ---------EDLLFLPQRPYLPL-GTLREQLIYP------------------------------WDDVLSGGEQQRLAFA 103 (166)
T ss_pred ---------ceEEEECCCCcccc-ccHHHHhhcc------------------------------CCCCCCHHHHHHHHHH
Confidence 37999999987664 7999988420 3689999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ +.|+|++|||++. . .+||+++++++
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~--~-~~~d~i~~l~~ 162 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSL--W-KFHDRVLDLDG 162 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhH--H-hhCCEEEEEcC
Confidence 99999999999999 99999999999999875 4899999997654 4 48899888865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=359.53 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=183.1
Q ss_pred hhhhhccCCCCccccchhHHHHHHhhhhhhc-------CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeee
Q 016817 31 ECVKLKLDLPNVSTLTPRLRVLREMERLALI-------APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILL 103 (382)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~al 103 (382)
.+......+..+..+.+|+.++++.++.... +....|+++||+|+|+..... ++|+|+||+|++||++||
T Consensus 340 ~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~---~vL~~isl~i~~Ge~vaI 416 (1466)
T PTZ00265 340 IILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDV---EIYKDLNFTLTEGKTYAF 416 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCC---ceeccceEEEcCCCEEEE
Confidence 3444556677788899999999876542100 111368999999999753211 169999999999999999
Q ss_pred ecccCCCchhHHHHHHHhhc-ccceeeeE-eecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHh
Q 016817 104 MGFSGSGKSSLVNLMYSVLS-RSGLVLFA-QTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS 181 (382)
Q Consensus 104 vGpnGsGKSTLl~~i~Gl~~-~~G~I~i~-G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 181 (382)
+||||||||||+++|+|+++ ++|+|+++ |.++.+.. ...+|+ +||||+|++.+|+ .|+++|+.+...
T Consensus 417 vG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~---------~~~lr~-~Ig~V~Q~~~LF~-~TI~eNI~~g~~ 485 (1466)
T PTZ00265 417 VGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN---------LKWWRS-KIGVVSQDPLLFS-NSIKNNIKYSLY 485 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCC---------HHHHHH-hccEecccccchh-ccHHHHHHhcCC
Confidence 99999999999999999999 89999995 57654322 122555 8999999999998 699999976421
Q ss_pred hh----------hc------------------------------------------CccccccccccCcccccccccc--
Q 016817 182 WM----------SE------------------------------------------GVHHNQRCLRSDDCALMKNDAE-- 207 (382)
Q Consensus 182 ~~----------~~------------------------------------------~~~~~~~~~~~l~~~~L~~~~~-- 207 (382)
.. .. ....++++.++++.+++.+++.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~l 565 (1466)
T PTZ00265 486 SLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSAL 565 (1466)
T ss_pred CccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhC
Confidence 00 00 0011234556677777765432
Q ss_pred --------ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCC
Q 016817 208 --------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLS 276 (382)
Q Consensus 208 --------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~ 276 (382)
+..+.+||||||||++|||||+++|+|||||| +||+.++..+++.|+++. ++.|+|+|+|||+ ++
T Consensus 566 p~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~--~~~g~TvIiIsHr--ls 641 (1466)
T PTZ00265 566 PDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK--GNENRITIIIAHR--LS 641 (1466)
T ss_pred ccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh--hcCCCEEEEEeCC--HH
Confidence 24567899999999999999999999999999 999999999999999982 3358999999995 44
Q ss_pred hhhhhhhhhhhhhh
Q 016817 277 TEERLDARLKICEY 290 (382)
Q Consensus 277 ~~~~~~d~v~ll~~ 290 (382)
++ +.||+|++|++
T Consensus 642 ~i-~~aD~Iivl~~ 654 (1466)
T PTZ00265 642 TI-RYANTIFVLSN 654 (1466)
T ss_pred HH-HhCCEEEEEeC
Confidence 47 47888888865
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=302.18 Aligned_cols=199 Identities=12% Similarity=0.065 Sum_probs=156.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..+.|+++|++++|+..... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~-- 89 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKP----VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP-- 89 (257)
T ss_pred CCceEEEEEEEEEeCCCCCc----ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC--
Confidence 35679999999999653222 6999999999999999999999999999999999999 8999999998664321
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccc---------cccCccc--cccccccccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRC---------LRSDDCA--LMKNDAEIDD 210 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~---------~~~l~~~--~L~~~~~~~~ 210 (382)
...+++ .++|++|++.+|+ .|+.+|+.... . ...+.+ .+.++.+ +++.... +.
T Consensus 90 -------~~~~~~-~i~~v~q~~~l~~-~tv~~nl~~~~-----~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~ 153 (257)
T cd03288 90 -------LHTLRS-RLSIILQDPILFS-GSIRFNLDPEC-----K-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-EG 153 (257)
T ss_pred -------HHHHhh-hEEEECCCCcccc-cHHHHhcCcCC-----C-CCHHHHHHHHHHhCcHHHHhhcccccCcEec-cC
Confidence 112343 8999999998887 59988874210 0 001111 1222333 4443333 66
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||+||++|||||+.+|++||||| +||+.++..+.+.++++ . ++.|||++||+++. +.. ||++++
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~---~-~~~tiii~sh~~~~--~~~-~dri~~ 226 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA---F-ADRTVVTIAHRVST--ILD-ADLVLV 226 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---c-CCCEEEEEecChHH--HHh-CCEEEE
Confidence 78999999999999999999999999999 99999999999999987 2 47999999996665 765 899998
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 227 l~~ 229 (257)
T cd03288 227 LSR 229 (257)
T ss_pred EEC
Confidence 876
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=296.57 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=143.2
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
|+..+++|++||+++|+||||||||||+++|+|+++ ++|+|.++|. .++|++|++..
T Consensus 15 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----------------------~i~~~~q~~~~ 72 (246)
T cd03237 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------------------TVSYKPQYIKA 72 (246)
T ss_pred EEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----------------------eEEEecccccC
Confidence 344444555899999999999999999999999999 8999999874 58899999876
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
++..|+.+++....... . .......++++.+++.+... +++.+|||||||||+|||||+.+|+++|||| +||+
T Consensus 73 ~~~~tv~e~l~~~~~~~--~-~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 73 DYEGTVRDLLSSITKDF--Y-THPYFKTEIAKPLQIEQILD-REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred CCCCCHHHHHHHHhhhc--c-ccHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 66789999986432111 1 11223456788899986554 8999999999999999999999999999999 9999
Q ss_pred CcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 244 KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 244 ~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.++..+.++|+++. ++.|+|||+||||++. +..+||+++++++
T Consensus 149 ~~~~~l~~~l~~~~--~~~~~tiiivsHd~~~--~~~~~d~i~~l~~ 191 (246)
T cd03237 149 EQRLMASKVIRRFA--ENNEKTAFVVEHDIIM--IDYLADRLIVFEG 191 (246)
T ss_pred HHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEcC
Confidence 99999999999983 4458999999996665 8889999999976
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=325.20 Aligned_cols=201 Identities=12% Similarity=0.106 Sum_probs=162.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|+++ . +|+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 266 ~~~l~~~~l~~-----~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~-- 332 (510)
T PRK15439 266 APVLTVEDLTG-----E------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST-- 332 (510)
T ss_pred CceEEEeCCCC-----C------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCH--
Confidence 44788999983 1 3999999999999999999999999999999999998 89999999987643211
Q ss_pred eehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh-hh---cCccccccccccCcccccc-ccccccccCCC
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW-MS---EGVHHNQRCLRSDDCALMK-NDAEIDDLKSS 214 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~-~~---~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~L 214 (382)
.. ..+ ..++|++|++ .+|+.+|+.+|+...... .. .....++.+.++++.+++. +.. ++++.+|
T Consensus 333 ----~~--~~~-~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~L 404 (510)
T PRK15439 333 ----AQ--RLA-RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA-EQAARTL 404 (510)
T ss_pred ----HH--HHh-CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCc-cCccccC
Confidence 11 123 3799999984 478888999998532110 00 0111223466788999996 454 4999999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.++|+++ .++|.|||+||||++. +.++||+++++++
T Consensus 405 SgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l---~~~g~tiIivsHd~~~--i~~~~d~i~~l~~ 478 (510)
T PRK15439 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI---AAQNVAVLFISSDLEE--IEQMADRVLVMHQ 478 (510)
T ss_pred CcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 3358999999997666 9999999999976
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=359.42 Aligned_cols=205 Identities=13% Similarity=0.122 Sum_probs=173.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
...|+++|+++.|+++++. +|+|+||++++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 926 ~~~L~I~nLsK~y~~~~k~----aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~----- 996 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRP----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET----- 996 (2272)
T ss_pred CceEEEEeEEEEecCCCce----EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-----
Confidence 4579999999999643333 5999999999999999999999999999999999998 89999999997631
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.....|+ .+||++|++.+++.+||+||+.+.....+.. ...++++.++++.+||.+..+ +++.+||||||||
T Consensus 997 -----~~~~~r~-~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqKQR 1069 (2272)
T TIGR01257 997 -----NLDAVRQ-SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-EEAQDLSGGMQRK 1069 (2272)
T ss_pred -----hHHHHhh-cEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHH
Confidence 1122454 8999999999999999999998754322211 112345778899999987654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.+++.++++|+++ + +|+|||++|||++. +..+||++++|++
T Consensus 1070 LsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l---~-~g~TIIltTHdmde--a~~laDrI~iL~~ 1135 (2272)
T TIGR01257 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY---R-SGRTIIMSTHHMDE--ADLLGDRIAIISQ 1135 (2272)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH---h-CCCEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 99999999999999998 3 48999999996655 8889999999976
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=292.85 Aligned_cols=177 Identities=15% Similarity=0.046 Sum_probs=144.6
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC--h
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN--Y 169 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~--~ 169 (382)
|+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++. ..+ +.++|+||++.+++ .
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--------------~~~-~~i~~v~q~~~~~~~~~ 65 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--------------KGW-RHIGYVPQRHEFAWDFP 65 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--------------Hhh-CcEEEecccccccCCCC
Confidence 6789999999999999999999999999999 8999999998532 123 37999999986643 3
Q ss_pred hhhhhhHHHHHhhh-h---cC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 170 NRVHEGLEELSSWM-S---EG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 170 ~tv~eni~~~~~~~-~---~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
.|+.+|+.+..... . .. ....+++.++++.+++.+... +++.+|||||||||+|||||+.+|++||||| +|
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 78999986532110 0 01 112234677889999986554 8999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.|+++ .++|.|+|++|||++. +.++||+++++++
T Consensus 145 D~~~~~~l~~~l~~~---~~~~~tvii~sH~~~~--~~~~~d~i~~l~G 188 (223)
T TIGR03771 145 DMPTQELLTELFIEL---AGAGTAILMTTHDLAQ--AMATCDRVVLLNG 188 (223)
T ss_pred CHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEECC
Confidence 999999999999998 3458999999996655 8888999888855
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=309.94 Aligned_cols=205 Identities=14% Similarity=0.104 Sum_probs=173.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..+++++++|.|++- + ++++|||+|++||+.||+|.||||||||+++|.|+++ ++|+|+++|+.+.-.+
T Consensus 3 ~~l~~~~itK~f~~~---~---And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~s---- 72 (501)
T COG3845 3 PALEMRGITKRFPGV---V---ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS---- 72 (501)
T ss_pred ceEEEeccEEEcCCE---E---ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCC----
Confidence 467889999999722 2 7999999999999999999999999999999999999 8999999999764211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh----cCccccccccccCccccccccccccccCCCcccee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS----EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
+.+ ..| ..||||+|++.|++.+||.||+........ ......+++.++.++.||.=..+ +++.+||-|||
T Consensus 73 --P~d--A~~-~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-~~V~dLsVG~q 146 (501)
T COG3845 73 --PRD--AIR-LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-AKVADLSVGEQ 146 (501)
T ss_pred --HHH--HHH-cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-ceeecCCcchh
Confidence 111 133 489999999999999999999965432110 00112356777888999985555 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||.|-+||+++|++||||| -|-|...+++++.++++ ++.|+|||+||| .+.++.++||++.+|+.
T Consensus 147 QRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l---~~~G~tIi~ITH--KL~Ev~~iaDrvTVLR~ 215 (501)
T COG3845 147 QRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRL---AAEGKTIIFITH--KLKEVMAIADRVTVLRR 215 (501)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEec--cHHHHHHhhCeeEEEeC
Confidence 99999999999999999999 89999999999999999 668999999999 88889999999999986
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=325.51 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=159.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|+++|++++|+++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~~-~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--------- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK-KQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--------- 69 (556)
T ss_pred cEEEEEeeEEEEeCCC-Ce----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------
Confidence 3589999999999622 22 6999999999999999999999999999999999998 8999998642
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-------h-----cCcc----------------------
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-------S-----EGVH---------------------- 188 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-------~-----~~~~---------------------- 188 (382)
..+||++|++.+++.+|+.+|+.+....+ . ....
T Consensus 70 ------------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (556)
T PRK11819 70 ------------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAAD 137 (556)
T ss_pred ------------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcC
Confidence 27999999999998899999997532100 0 0000
Q ss_pred ---ccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccC
Q 016817 189 ---HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCN 262 (382)
Q Consensus 189 ---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~ 262 (382)
..+++.++++.+|+. .. ++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .
T Consensus 138 ~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~-----~ 210 (556)
T PRK11819 138 AWDLDSQLEIAMDALRCP-PW-DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY-----P 210 (556)
T ss_pred ccchHHHHHHHHHhCCCC-cc-cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC-----C
Confidence 023456678888886 34 48999999999999999999999999999999 99999999999999986 2
Q ss_pred CCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 263 ENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 263 g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.|||+||||++. +..+||+|++|++
T Consensus 211 -~tviiisHd~~~--~~~~~d~i~~l~~ 235 (556)
T PRK11819 211 -GTVVAVTHDRYF--LDNVAGWILELDR 235 (556)
T ss_pred -CeEEEEeCCHHH--HHhhcCeEEEEeC
Confidence 499999996666 8899999999976
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=322.13 Aligned_cols=205 Identities=11% Similarity=0.083 Sum_probs=161.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+.+|+++|+++.| .. +|+++||+|++||+++|+||||||||||+++|+|+.+ ++|+|+++|+++...+.
T Consensus 248 ~~~i~~~~l~~~~--~~------~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-- 317 (491)
T PRK10982 248 EVILEVRNLTSLR--QP------SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA-- 317 (491)
T ss_pred CcEEEEeCccccc--Cc------ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH--
Confidence 3579999999974 22 6999999999999999999999999999999999999 89999999987642211
Q ss_pred eehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHH--HHhhhh-cC----ccccccccccCccccccccccccccC
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEE--LSSWMS-EG----VHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~--~~~~~~-~~----~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
. ..++ +.++|++|++ .+|+.+++.+|... ...... .+ ....+.+.++++.+++.+...++++.
T Consensus 318 ----~--~~~~-~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 390 (491)
T PRK10982 318 ----N--EAIN-HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG 390 (491)
T ss_pred ----H--HHHH-CCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc
Confidence 1 1123 3799999984 46777777766311 111100 01 01123456678888885322359999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|+|||||| +||+.++..++++|+++ .++|.|||+||||++. +..+||++++++
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l---~~~~~tvi~vsHd~~~--~~~~~d~v~~l~ 465 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL---AKKDKGIIIISSEMPE--LLGITDRILVMS 465 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHH---HHCCCEEEEECCChHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 99999999999999998 3468999999996666 889999999996
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 466 ~ 466 (491)
T PRK10982 466 N 466 (491)
T ss_pred C
Confidence 5
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=321.92 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=162.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..++++|+++. . +++|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++....
T Consensus 256 ~~l~~~~~~~~----~------~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~---- 321 (501)
T PRK11288 256 VRLRLDGLKGP----G------LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS---- 321 (501)
T ss_pred cEEEEeccccC----C------cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCC----
Confidence 35788888732 2 5999999999999999999999999999999999999 8999999998653211
Q ss_pred ehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhhhhc--C----c-cccccccccCcccccc-ccccccccC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSWMSE--G----V-HHNQRCLRSDDCALMK-NDAEIDDLK 212 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~~~~--~----~-~~~~~~~~~l~~~~L~-~~~~~~~~~ 212 (382)
.. ...+ +.++|++|++ .+|+.+|+.+|+......... + . ..++.+.++++.+++. +.. ++++.
T Consensus 322 --~~--~~~~-~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 395 (501)
T PRK11288 322 --PR--DAIR-AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR-EQLIM 395 (501)
T ss_pred --HH--HHHh-CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc-cCccc
Confidence 01 1123 3799999996 388889999998643211100 0 0 1123467788999995 444 49999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ .++|.|||+||||++. +.++||++++++
T Consensus 396 ~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tviivsHd~~~--~~~~~d~i~~l~ 470 (501)
T PRK11288 396 NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL---AAQGVAVLFVSSDLPE--VLGVADRIVVMR 470 (501)
T ss_pred cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 99999999999999998 3468999999997666 999999999996
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 471 ~ 471 (501)
T PRK11288 471 E 471 (501)
T ss_pred C
Confidence 5
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=305.34 Aligned_cols=250 Identities=14% Similarity=0.105 Sum_probs=197.7
Q ss_pred eeccccchhhhhhhccCCCCccccchhHHHHHHhhhhhhc---------CcCchhHHHHHhhhcccCCeeeecCCcccCC
Q 016817 22 WWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALI---------APDGLNELRHKFLSYRSGDFWIPIGGIQKGG 92 (382)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~i~nvs~~y~~~~~~v~~~vL~~is 92 (382)
-.+...|+..++..-..+.++...+++...+++.+..... ...+.+.|.+|+|.|.... + +|+++|
T Consensus 209 l~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~----iL~~is 283 (497)
T COG5265 209 LFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRR-P----ILNGIS 283 (497)
T ss_pred HhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccc-h----hhcCcc
Confidence 3455667777777777777778888888888777754111 1234578999999997544 2 699999
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|++++|+.+|++||||+||||++++|.++++ .+|.|.+||+++++.. ...+|+ .||+||||..||. .|
T Consensus 284 f~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt---------q~slR~-aIg~VPQDtvLFN-Dt 352 (497)
T COG5265 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT---------QQSLRR-AIGIVPQDTVLFN-DT 352 (497)
T ss_pred ccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH---------HHHHHH-HhCcCcccceehh-hh
Confidence 9999999999999999999999999999999 9999999999876432 223665 8999999999997 79
Q ss_pred hhhhHHHHHhhhhcCccccccccccCccccccccccccccCC-----------CccceeeecceeeeehhHHHHHHHHh-
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------SPKYVLRRVDFAMVVSNIAEIYKALK- 239 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------LSGGqkQRvaIAraL~~~P~iLLLDE- 239 (382)
+..|+.+. .....++.+..+++.+.+.+++. ..|.. |||||||||+|||+++++|+||+|||
T Consensus 353 i~yni~yg-----r~~at~eev~aaa~~aqi~~fi~-~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea 426 (497)
T COG5265 353 IAYNIKYG-----RPDATAEEVGAAAEAAQIHDFIQ-SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426 (497)
T ss_pred HHHHHhcc-----CccccHHHHHHHHHHhhhhHHHH-hCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh
Confidence 99999543 44556667777777777766554 55543 99999999999999999999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--cccccccce
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--LGVSEISGV 299 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--~~~~~~~~v 299 (382)
+||..+++.++..|++.. .|.|.++|.| +++++..+|.++++-++ ++.|..++.
T Consensus 427 tsaldt~te~~iq~~l~~~~----~~rttlviah--rlsti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 427 TSALDTHTEQAIQAALREVS----AGRTTLVIAH--RLSTIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred hhHhhhhHHHHHHHHHHHHh----CCCeEEEEee--hhhhccCCceEEEeeCCEEEecCcHHHH
Confidence 999999999999999983 6899999999 88888875554444444 445544333
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=306.09 Aligned_cols=182 Identities=16% Similarity=0.118 Sum_probs=147.8
Q ss_pred eecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHh
Q 016817 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS 181 (382)
Q Consensus 103 lvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 181 (382)
|+||||||||||+|+|+|+++ ++|+|.++|+++..... .+ +.+||+||++.+|+++|+.+|+.+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~-----------~~-~~i~~v~q~~~l~~~~tv~enl~~~~~ 68 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-----------HL-RHINMVFQSYALFPHMTVEENVAFGLK 68 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-----------HH-CCEEEEecCccccCCCcHHHHHHHHHh
Confidence 689999999999999999999 89999999987643211 12 379999999999999999999976532
Q ss_pred hhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCcc
Q 016817 182 WMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPG 257 (382)
Q Consensus 182 ~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~ 257 (382)
..... ....+++.++++.+++.+..+ +++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++.
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 69 MRKVPRAEIKPRVLEALRLVQLEEFAD-RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCcchhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 11111 111245677899999986654 9999999999999999999999999999999 999999999999999983
Q ss_pred ccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 258 LRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 258 ~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
++.|+|+|+||||++. +..+||++++|++ +..+++.+++.
T Consensus 148 --~~~g~tiiivTHd~~e--~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 148 --EQLGITFVFVTHDQEE--AMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred --HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4458999999996554 8899999999987 33445555554
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=321.12 Aligned_cols=207 Identities=13% Similarity=0.046 Sum_probs=159.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcc--cceeeeEeecCCCcccc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSR--SGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~--~G~I~i~G~~i~~~~~~ 141 (382)
.++++++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+.++ +|+|+++|+++....
T Consensus 258 ~~~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~-- 329 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP------ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE-- 329 (490)
T ss_pred CceEEEeceEEEECCee------EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCC--
Confidence 45899999999996432 59999999999999999999999999999999998773 999999998642110
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCCh--hhhhhhHHHHHhh---hhc--CccccccccccCccccccc-cccccccCC
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNY--NRVHEGLEELSSW---MSE--GVHHNQRCLRSDDCALMKN-DAEIDDLKS 213 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~--~tv~eni~~~~~~---~~~--~~~~~~~~~~~l~~~~L~~-~~~~~~~~~ 213 (382)
.....|+ .+||++|++.++.. .++.+++...... ... ....++++.++++.+++.+ .. ++++.+
T Consensus 330 ------~~~~~~~-~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~ 401 (490)
T PRK10938 330 ------TIWDIKK-HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-DAPFHS 401 (490)
T ss_pred ------CHHHHHh-hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-cCchhh
Confidence 0111333 79999998765432 3555554321110 000 0111235677899999986 44 489999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh-hhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER-LDARLKICE 289 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~-~~d~v~ll~ 289 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.+.|||+||||++. +.. +||++++|+
T Consensus 402 LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~--~~~~~tviivsHd~~~--~~~~~~d~v~~l~ 477 (490)
T PRK10938 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLI--SEGETQLLFVSHHAED--APACITHRLEFVP 477 (490)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--hcCCcEEEEEecchhh--hhhhhheeEEEec
Confidence 99999999999999999999999999 999999999999999983 3323569999997666 776 589999987
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 478 ~ 478 (490)
T PRK10938 478 D 478 (490)
T ss_pred C
Confidence 5
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=322.53 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=158.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~~~------~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDNGP------LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCCce------eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 4799999999996432 5999999999999999999999999999999999998 8999999874
Q ss_pred ehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCccccccccccCcccccc-ccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK-NDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSGGqkQ 220 (382)
..+||++|++. +++.+|+.+|+.... .....++++.++++.+++. +.. ++++.+|||||||
T Consensus 382 -----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~q 445 (530)
T PRK15064 382 -----------ANIGYYAQDHAYDFENDLTLFDWMSQWR----QEGDDEQAVRGTLGRLLFSQDDI-KKSVKVLSGGEKG 445 (530)
T ss_pred -----------eEEEEEcccccccCCCCCcHHHHHHHhc----cCCccHHHHHHHHHHcCCChhHh-cCcccccCHHHHH
Confidence 37999999864 556689999875321 1112234567788999985 344 5999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..+.+.|+++ +.|||+||||++. +..+||+++++++
T Consensus 446 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~--~~~~~d~i~~l~~ 510 (530)
T PRK15064 446 RMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREF--VSSLATRIIEITP 510 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999 99999999999999886 3499999997666 8899999999976
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=324.99 Aligned_cols=188 Identities=17% Similarity=0.097 Sum_probs=162.1
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++. .|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++ .
T Consensus 338 ~~~l~~~~ls~~~~~~-------~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~--------- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-------SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L--------- 400 (590)
T ss_pred ceEEEEcceEEEECCE-------EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e---------
Confidence 4579999999999532 3899999999999999999999999999999999999 89999875 1
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.++|++|++.+++.+||.+|+......+ .....+.++++.+++.+.. ++++.+|||||||||
T Consensus 401 -------------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~L~~l~l~~~~-~~~~~~LSGGe~QRv 462 (590)
T PRK13409 401 -------------KISYKPQYIKPDYDGTVEDLLRSITDDL----GSSYYKSEIIKPLQLERLL-DKNVKDLSGGELQRV 462 (590)
T ss_pred -------------eEEEecccccCCCCCcHHHHHHHHhhhc----ChHHHHHHHHHHCCCHHHH-hCCcccCCHHHHHHH
Confidence 5899999988888899999997532111 1123456789999998655 499999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.++|+++. ++.|.|||+||||++. +..+||+++++++
T Consensus 463 aiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tviivsHD~~~--~~~~aDrvivl~~ 529 (590)
T PRK13409 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA--EEREATALVVDHDIYM--IDYISDRLMVFEG 529 (590)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEcC
Confidence 99999999999999999 999999999999999984 4458999999997766 8889999999987
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=325.07 Aligned_cols=198 Identities=13% Similarity=0.023 Sum_probs=161.0
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c--cceeeeEeecCCCcccceeeh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--SGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~--~G~I~i~G~~i~~~~~~~~~~ 145 (382)
.+|++++|+++. +|+|+|+++++||++||+||||||||||+++|+|+.+ . +|+|.+||+++..
T Consensus 71 ~~~l~~~~~~~~------iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-------- 136 (659)
T PLN03211 71 ISDETRQIQERT------ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-------- 136 (659)
T ss_pred cccccccCCCCe------eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch--------
Confidence 567888886433 6999999999999999999999999999999999987 4 8999999986421
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Ccc---ccccccccCcccccccccc----ccccCCCccc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVH---HNQRCLRSDDCALMKNDAE----IDDLKSSPKY 217 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~---~~~~~~~~l~~~~L~~~~~----~~~~~~LSGG 217 (382)
..+ +++|||+|++.+++.+||+||+.+.+..... ... ..++++++++.+||.+..+ ++.+.+||||
T Consensus 137 -----~~~-~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgG 210 (659)
T PLN03211 137 -----QIL-KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGG 210 (659)
T ss_pred -----hhc-cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChh
Confidence 122 3799999999999999999999865422111 111 1234667888999975432 3567889999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||+|+.+|+||+||| +||+.++..+.+.|++++ ++|+|||++||+++. ++.+++|+++++++
T Consensus 211 erqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~---~~g~TvI~~sH~~~~-~i~~~~D~iilL~~ 282 (659)
T PLN03211 211 ERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA---QKGKTIVTSMHQPSS-RVYQMFDSVLVLSE 282 (659)
T ss_pred hhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH---hCCCEEEEEecCCCH-HHHHhhceEEEecC
Confidence 9999999999999999999999 999999999999999983 368999999996542 26778999999876
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=296.29 Aligned_cols=175 Identities=15% Similarity=0.054 Sum_probs=143.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|. +++++|++.
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-----------------------~~~~~~~~~ 95 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------------------VSVIAISAG 95 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-----------------------EeEEecccC
Confidence 6999999999999999999999999999999999999 8999999884 234556666
Q ss_pred CCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 166 GFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+++.+|+.+|+.......+... ...+.+..+++.+++.+.+. +++.+|||||+|||+|||||+.+|++||||| +|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 6677899999865322111111 11122345677778876654 8999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.|.++ ++.|.|||++|||+.. +..+|++++++++
T Consensus 175 D~~~~~~l~~~L~~~---~~~g~tiIiisH~~~~--i~~~~d~i~~l~~ 218 (264)
T PRK13546 175 DQTFAQKCLDKIYEF---KEQNKTIFFVSHNLGQ--VRQFCTKIAWIEG 218 (264)
T ss_pred CHHHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHHHcCEEEEEEC
Confidence 999999999999987 3468999999996555 8889999999876
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=275.03 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=131.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. + +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 1 l~~~~l~~~~~~~--~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~----- 69 (163)
T cd03216 1 LELRGITKRFGGV--K----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP----- 69 (163)
T ss_pred CEEEEEEEEECCe--E----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH-----
Confidence 3578999999643 2 5999999999999999999999999999999999999 89999999986643211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
. ...+ +.++|+|| |||||+||++||
T Consensus 70 -~--~~~~-~~i~~~~q---------------------------------------------------LS~G~~qrl~la 94 (163)
T cd03216 70 -R--DARR-AGIAMVYQ---------------------------------------------------LSVGERQMVEIA 94 (163)
T ss_pred -H--HHHh-cCeEEEEe---------------------------------------------------cCHHHHHHHHHH
Confidence 0 1123 37888888 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .++|.|+|++|||++. +..+||+++++++
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--~~~~~d~~~~l~~ 157 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRL---RAQGVAVIFISHRLDE--VFEIADRVTVLRD 157 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999 99999999999999998 3458999999996554 8888999988865
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=318.72 Aligned_cols=190 Identities=13% Similarity=0.088 Sum_probs=156.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|+++. + +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++.
T Consensus 3 ~~i~~~nls~~~~~~~-~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKK-E----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG---------- 67 (552)
T ss_pred EEEEEeeEEEecCCCC-e----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------
Confidence 4789999999996222 2 5999999999999999999999999999999999998 8999998652
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-------h-----cCcc-c---------------------
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-------S-----EGVH-H--------------------- 189 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-------~-----~~~~-~--------------------- 189 (382)
..+||++|++.+++.+|+.+|+.+..... . .... .
T Consensus 68 -----------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 68 -----------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred -----------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 27999999999998899999997632110 0 0000 0
Q ss_pred ---cccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCC
Q 016817 190 ---NQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNE 263 (382)
Q Consensus 190 ---~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g 263 (382)
.+++.++++.+|+.. . ++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ +
T Consensus 137 ~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~ 208 (552)
T TIGR03719 137 WDLDRKLEIAMDALRCPP-W-DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------P 208 (552)
T ss_pred chhHHHHHHHHhhCCCCc-c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------C
Confidence 022344666777753 3 48899999999999999999999999999999 99999999999999886 2
Q ss_pred CCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 264 NPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 264 ~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.|||+||||++. +..+||+++++++
T Consensus 209 ~tvIiisHd~~~--~~~~~d~v~~l~~ 233 (552)
T TIGR03719 209 GTVVAVTHDRYF--LDNVAGWILELDR 233 (552)
T ss_pred CeEEEEeCCHHH--HHhhcCeEEEEEC
Confidence 499999997666 8889999999876
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=321.46 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=158.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+++.
T Consensus 322 ~~~l~~~~l~~~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGDRL------LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET--------- 386 (556)
T ss_pred CeEEEEEeEEEEECCee------eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---------
Confidence 35899999999996432 5999999999999999999999999999999999998 8999998432
Q ss_pred eehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+||++|++ .+++.+|+.+|+.+........ ........+++.+++.+...++++.+||||||||
T Consensus 387 ------------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 453 (556)
T PRK11819 387 ------------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVG-NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNR 453 (556)
T ss_pred ------------eEEEEEeCchhhcCCCCCHHHHHHhhccccccc-ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence 1689999996 6788899999997542111111 1122345678889996433348999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+.+.|.++ .+ |||+||||++. +..+||+++++++
T Consensus 454 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-tvi~vtHd~~~--~~~~~d~i~~l~~ 517 (556)
T PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-----PG-CAVVISHDRWF--LDRIATHILAFEG 517 (556)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CC-eEEEEECCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 99999999999999987 34 89999997666 8899999999863
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=321.23 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=158.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|++++.
T Consensus 320 ~~~l~~~~l~~~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~--------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL------LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET--------- 384 (552)
T ss_pred CeEEEEeeEEEEECCee------eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc---------
Confidence 35899999999996432 5999999999999999999999999999999999998 8999998432
Q ss_pred eehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+||++|++ .+++.+|+.+|+.+........ .......++++.+++.+...++++.+||||||||
T Consensus 385 ------------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qr 451 (552)
T TIGR03719 385 ------------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLG-KREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNR 451 (552)
T ss_pred ------------eEEEEEeCCccccCCCCcHHHHHHhhccccccC-cchHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence 1689999996 4788899999997542111111 1122345678889996433348999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+.++|+++ .+ |||+||||++. +..+||+++++++
T Consensus 452 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-~viivsHd~~~--~~~~~d~i~~l~~ 515 (552)
T TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-----AG-CAVVISHDRWF--LDRIATHILAFEG 515 (552)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-----CC-eEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 99999999999999997 34 89999997666 8889999999864
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=315.30 Aligned_cols=205 Identities=17% Similarity=0.167 Sum_probs=161.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|+++.|+.+.... +|+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~---IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHY---ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccce---EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-------
Confidence 45788999999887643211 5999999999999999999999999999999999998 899999998631
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
. +.+.+.+++.+|+.+|+.+........ ....+.+.++++.+++.+.+. +++.+||||||||
T Consensus 89 -------------~---i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-~~~~~LSGGQrQR 151 (549)
T PRK13545 89 -------------L---IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-QPVKTYSSGMKSR 151 (549)
T ss_pred -------------e---EEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-CCcccCCHHHHHH
Confidence 1 122334556689999997543211111 111233556788899986655 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||+||||++. +..+||+++++++ ...++
T Consensus 152 VaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el---~~~G~TIIIVSHdl~~--i~~l~DrIivL~~GkIv~~G~ 226 (549)
T PRK13545 152 LGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF---KEQGKTIFFISHSLSQ--VKSFCTKALWLHYGQVKEYGD 226 (549)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEECCHHH--HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999 99999999999999997 3468999999996655 8889999999976 33444
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+.+++
T Consensus 227 ~~el~ 231 (549)
T PRK13545 227 IKEVV 231 (549)
T ss_pred HHHHH
Confidence 44444
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=275.18 Aligned_cols=209 Identities=16% Similarity=0.092 Sum_probs=165.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|+++.|+.+.|..+. +.++++|+++||+|++|+++.|+|.||||||||+|+|+|-+. ++|+|.++|.++...+.
T Consensus 1 Mi~~~~~~~~f~~g~-~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~---- 75 (263)
T COG1101 1 MISLSNATKTFFKGT-PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV---- 75 (263)
T ss_pred CcccccceeeecCCC-hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH----
Confidence 466778888876543 223458999999999999999999999999999999999999 99999999998865432
Q ss_pred hhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh-cCccc------cccccccCcc--ccccccccccccCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS-EGVHH------NQRCLRSDDC--ALMKNDAEIDDLKS 213 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~-~~~~~------~~~~~~~l~~--~~L~~~~~~~~~~~ 213 (382)
.++ ...++-|||||. .++.+|+.||+......-. ++... .+...+-++. .|+++.+. .++.-
T Consensus 76 --~~R----A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~-~~igl 148 (263)
T COG1101 76 --AKR----ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLS-DRIGL 148 (263)
T ss_pred --HHH----hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhc-Chhhh
Confidence 222 236778999974 6899999999976543210 11111 1112233443 35566665 78888
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||-+++++|.++.|+||+||| +|||.+...++++-.++. .+.+.|.+||||+|+- +..|.+|.++|++
T Consensus 149 LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV--~~~klTtlMVTHnm~~--Al~yG~RlImLh~ 224 (263)
T COG1101 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV--EEHKLTTLMVTHNMED--ALDYGNRLIMLHS 224 (263)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHH--HhcCCceEEEeccHHH--HHhhCCeEEEEeC
Confidence 99999999999999999999999999 999999999999999984 6778999999995555 9999999999987
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=262.20 Aligned_cols=198 Identities=16% Similarity=0.067 Sum_probs=160.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~ 141 (382)
++.++||+.+.++.- .|-++||+|.+||++.|+||||||||||+..+.|.+. . +|+++++++++.-.+.
T Consensus 2 ~l~l~nvsl~l~g~c------LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa- 74 (213)
T COG4136 2 MLCLKNVSLRLPGSC------LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA- 74 (213)
T ss_pred ceeeeeeeecCCCce------EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch-
Confidence 567889987775443 4899999999999999999999999999999999987 3 8999999997653332
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+ +++|+.|||+.|||+++|.+|+.+....-.++...+..+..++++.||..... +.|.+||||||-|
T Consensus 75 ----------~q-Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~-~dP~tlSGGQrAR 142 (213)
T COG4136 75 ----------AQ-RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFH-QDPATLSGGQRAR 142 (213)
T ss_pred ----------hh-hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhh-cChhhcCcchHHH
Confidence 22 48999999999999999999996543111134444455778899999998766 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
|++-|+|+.+|+.++||| .||...+.++.+..-.-. ++.|..+|+||||..- +. +..||+-
T Consensus 143 vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~--r~agiPtv~VTHD~~D--vp-agsrVie 206 (213)
T COG4136 143 VALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV--RAAGIPTVQVTHDLQD--VP-AGSRVIE 206 (213)
T ss_pred HHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH--HhcCCCeEEEeccccc--CC-CCCeeee
Confidence 999999999999999999 899988888887664432 5579999999996544 44 4555543
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=287.66 Aligned_cols=194 Identities=15% Similarity=0.093 Sum_probs=154.8
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee-----------eEeecCCC
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGN 137 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~-----------i~G~~i~~ 137 (382)
.||+++|+.+. . +|+|+|+ +++|++++|+||||||||||+|+|+|+++ ++|+|+ ++|+++.+
T Consensus 4 ~~~~~~y~~~~-~----~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGPNS-F----KLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecCcc-h----hhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 37889996432 1 6999995 99999999999999999999999999999 899996 66665421
Q ss_pred cccceeehhhhhhhHhh--hccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCc
Q 016817 138 SSHTITMYMEEHNVMRS--LQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~--~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
.. ...++ ..++|++|++.+++ .++.+++.+.. ......+.+.++++.+|+.+... +.+.+||
T Consensus 78 ~~----------~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l----~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS 141 (255)
T cd03236 78 YF----------TKLLEGDVKVIVKPQYVDLIP-KAVKGKVGELL----KKKDERGKLDELVDQLELRHVLD-RNIDQLS 141 (255)
T ss_pred hh----------HHhhhcccceeeecchhccCc-hHHHHHHHHHh----chhHHHHHHHHHHHHcCCchhhc-CChhhCC
Confidence 10 01111 14789999888887 47777775431 11122345677888999986654 8999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||++|||||+.+|+++|||| +||+.++..+.+.|+++ .++++|||+||||++. +..+||+++++++
T Consensus 142 ~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l---~~~~~tIIiiSHd~~~--~~~~ad~i~~l~~ 214 (255)
T cd03236 142 GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL---AEDDNYVLVVEHDLAV--LDYLSDYIHCLYG 214 (255)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEECCHHH--HHHhCCEEEEECC
Confidence 999999999999999999999999 99999999999999998 3358999999996655 8889999999987
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=267.34 Aligned_cols=221 Identities=15% Similarity=0.155 Sum_probs=182.9
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe-ecCCCcccce
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ-TSSGNSSHTI 142 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G-~~i~~~~~~~ 142 (382)
..++++||+.+|++-. +|+++||+|.+||.-+|||||||||||++.+|+|-.+ +.|+++|+| .++...+
T Consensus 4 ~iL~~~~vsVsF~GF~------Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~--- 74 (249)
T COG4674 4 IILYLDGVSVSFGGFK------ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP--- 74 (249)
T ss_pred ceEEEeceEEEEccee------eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC---
Confidence 4678899999996433 7999999999999999999999999999999999999 789999999 6655332
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh-------hh--cCccccccccccCccccccccccccccCC
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW-------MS--EGVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~-------~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
.....|. .||--||.|..|..+||+||++..... +. .....+.+++++|+..||.+... +....
T Consensus 75 -----e~~IAr~-GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-~~A~~ 147 (249)
T COG4674 75 -----EHRIARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-RLAAL 147 (249)
T ss_pred -----HHHHHHh-ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-hhhhh
Confidence 2222444 899999999999999999999764321 11 11223357888999999997654 88899
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||.||||++.|++.++++|++|+||| ++-...+...-++|+.++ .+.+|++|.|||.+ +..++++|-+|+.
T Consensus 148 LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la----~~hsilVVEHDM~F--vr~~A~~VTVlh~ 221 (249)
T COG4674 148 LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA----GKHSILVVEHDMGF--VREIADKVTVLHE 221 (249)
T ss_pred hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh----cCceEEEEeccHHH--HHHhhheeEEEec
Confidence 99999999999999999999999999 888888899999999984 56899999999999 9999999999987
Q ss_pred ---cccccccceeeEEEecc
Q 016817 291 ---LGVSEISGVYDIVCLTE 307 (382)
Q Consensus 291 ---~~~~~~~~v~~~~~l~~ 307 (382)
+..|+-.++-++|.+.+
T Consensus 222 G~VL~EGsld~v~~dp~ViE 241 (249)
T COG4674 222 GSVLAEGSLDEVQNDPKVIE 241 (249)
T ss_pred cceeecccHHHhhcCcceEe
Confidence 56666666666655544
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=316.83 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=154.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ ++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~~~------il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRI------ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCCee------eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 44799999999996432 5999999999999999999999999999999999998 8999998632
Q ss_pred eehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+||++|+. .+.+..++.+++... ......+.+.++++.+++.....++++.+|||||||
T Consensus 375 ------------~~igy~~Q~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekq 437 (638)
T PRK10636 375 ------------IKLGYFAQHQLEFLRADESPLQHLARL-----APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKA 437 (638)
T ss_pred ------------EEEEEecCcchhhCCccchHHHHHHHh-----CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHH
Confidence 2689999974 344555666655311 111223456778899999643234899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||+|+.+|++||||| +||+.++..+.+.|.++ .| |||+||||++. +..+||+++++++
T Consensus 438 Rl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~g-tvi~vSHd~~~--~~~~~d~i~~l~~ 502 (638)
T PRK10636 438 RLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-----EG-ALVVVSHDRHL--LRSTTDDLYLVHD 502 (638)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-eEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999 99999999999999986 34 99999997776 8899999999976
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=316.00 Aligned_cols=190 Identities=16% Similarity=0.118 Sum_probs=156.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++||+++|++. . +|+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.+ |.+
T Consensus 317 ~~~l~~~~l~~~~~~~--~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~-------- 381 (635)
T PRK11147 317 KIVFEMENVNYQIDGK--Q----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK-------- 381 (635)
T ss_pred CceEEEeeeEEEECCe--E----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC--------
Confidence 3479999999999643 2 5999999999999999999999999999999999998 8999998 542
Q ss_pred eehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+||++|++ .+++.+|+.+|+........ .......+..+++.+++.....++++.+||||||||
T Consensus 382 ------------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqR 448 (635)
T PRK11147 382 ------------LEVAYFDQHRAELDPEKTVMDNLAEGKQEVM-VNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNR 448 (635)
T ss_pred ------------cEEEEEeCcccccCCCCCHHHHHHhhccccc-ccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHH
Confidence 1689999985 57888999999965321110 011123456678888885332348999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|+|||||+.+|++||||| +||+.++..+.++|+++ +.|||+||||... +..+|+++++++
T Consensus 449 l~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~--~~~~~d~i~~l~ 511 (635)
T PRK11147 449 LLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQF--VDNTVTECWIFE 511 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHH--HHHhcCEEEEEe
Confidence 999999999999999999 99999999999999885 3499999997666 888999999986
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=254.55 Aligned_cols=229 Identities=16% Similarity=0.091 Sum_probs=175.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+.|.++++++|+.|+.+. ..+||||++.+||+++|+|.||||||||++||++-+. +.|+|.+.-.+-... ..
T Consensus 3 ~~PLL~V~~lsk~Yg~~~------gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~-dl 75 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGK------GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPR-DL 75 (258)
T ss_pred CCcceeehhhhhhhCCCc------CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCch-hH
Confidence 356899999999998765 5999999999999999999999999999999999988 899999876432111 11
Q ss_pred eeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcC--ccccccccccCccccccccccccccCCCccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
..+...+++.+.+..-|||-|+|. |-...+..-||.+-....+.. -..++.+.++++.+.++...-|..|.++|||
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 223333333333337899999974 222233344554322111100 1123455678999998765455889999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---c
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---L 291 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~ 291 (382)
||||+.|||-|+..|+++++|| +||..-+..++++++.+. .+.|.++++||||+.. +.-.+++.++|+. +
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv--~~l~la~viVTHDl~V--arLla~rlmvmk~g~vv 231 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV--RELGLAVVIVTHDLAV--ARLLADRLMVMKQGQVV 231 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHH--HhcCceEEEEechhHH--HHHhhhcceeecCCCEe
Confidence 9999999999999999999999 999999999999999994 7789999999997766 8888999999987 6
Q ss_pred ccccccceeeE
Q 016817 292 GVSEISGVYDI 302 (382)
Q Consensus 292 ~~~~~~~v~~~ 302 (382)
..+-+..++++
T Consensus 232 e~GLTDrvLDD 242 (258)
T COG4107 232 ESGLTDRVLDD 242 (258)
T ss_pred ccccccccccC
Confidence 67767777754
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=287.50 Aligned_cols=199 Identities=15% Similarity=0.047 Sum_probs=150.1
Q ss_pred hhHHHHHHhhhh-----hhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 47 PRLRVLREMERL-----ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 47 ~~~~~~~~~~~~-----~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.+.++++.++. +.+...+.|+++|+++. ... +|+++||+|++||+++|+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~--~~~------vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV--GAP------VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccccccCCCCCeEEEEEEEEe--ccc------ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445555555432 22334567999999985 222 69999999999999999999999999999999999
Q ss_pred hc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc
Q 016817 122 LS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA 200 (382)
Q Consensus 122 ~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~ 200 (382)
++ ++|+|.++| .++|++|++.+++ .|+.+|+.+... . . ...+.++++.+
T Consensus 87 ~~p~~G~I~i~g-----------------------~i~yv~q~~~l~~-~tv~enl~~~~~-~--~---~~~~~~~l~~~ 136 (282)
T cd03291 87 LEPSEGKIKHSG-----------------------RISFSSQFSWIMP-GTIKENIIFGVS-Y--D---EYRYKSVVKAC 136 (282)
T ss_pred CCCCCcEEEECC-----------------------EEEEEeCcccccc-cCHHHHhhcccc-c--C---HHHHHHHHHHh
Confidence 99 899999876 3789999998887 599999864211 0 0 01111222223
Q ss_pred cccccc----------cccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhc-cCccccccCCCCe
Q 016817 201 LMKNDA----------EIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLF-SAPGLRKCNENPI 266 (382)
Q Consensus 201 ~L~~~~----------~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l-~~l~~~~~~g~ti 266 (382)
++.+.+ .++.+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.+ +.+ . .+.||
T Consensus 137 ~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~---~-~~~tI 212 (282)
T cd03291 137 QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL---M-ANKTR 212 (282)
T ss_pred CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh---h-CCCEE
Confidence 332111 124567999999999999999999999999999 99999999998754 555 2 47899
Q ss_pred EEEecCCCCChhhhhhhhhhhhhh
Q 016817 267 LILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 267 IiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||++. +. .||++++|++
T Consensus 213 iiisH~~~~--~~-~~d~i~~l~~ 233 (282)
T cd03291 213 ILVTSKMEH--LK-KADKILILHE 233 (282)
T ss_pred EEEeCChHH--HH-hCCEEEEEEC
Confidence 999997665 64 6889988876
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-35 Score=274.66 Aligned_cols=212 Identities=14% Similarity=0.015 Sum_probs=166.7
Q ss_pred hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc
Q 016817 60 LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 60 ~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~ 138 (382)
.+..+++|+++||++.|+++. +|+|+|++|++||..+|+||||||||||+++++|.++ .+|.+.+.|+.....
T Consensus 25 ~~~~~~li~l~~v~v~r~gk~------iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~ 98 (257)
T COG1119 25 IEINEPLIELKNVSVRRNGKK------ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG 98 (257)
T ss_pred CCCCcceEEecceEEEECCEe------eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC
Confidence 334567899999999996554 6999999999999999999999999999999999999 899999999865422
Q ss_pred ccceeehhhhhhhHhhhccceeeEe--CCCCChhhhhhhHHHHHhh-hh-cC-cc---ccccccccCccccccccccccc
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYD--SRGFNYNRVHEGLEELSSW-MS-EG-VH---HNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~--~~l~~~~tv~eni~~~~~~-~~-~~-~~---~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
.. . .++|+ +||+|.-. ....++.+++|.+....+. .+ .. .. ..+++..+++.+|+.+. .+++
T Consensus 99 ~~-------~-~elrk-~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-a~r~ 168 (257)
T COG1119 99 ET-------I-FELRK-RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-ADRP 168 (257)
T ss_pred cc-------h-HHHHH-HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-ccCc
Confidence 11 0 34665 89999653 2334456777766443221 11 11 11 22456678999999865 5599
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
..+||-||||||.|||||+.+|++||||| +||...+..+.+.|.+++ ....+.++|+||| ..+++-.+.+++++
T Consensus 169 ~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~-~~~~~~~ll~VtH--h~eEi~~~~th~ll 245 (257)
T COG1119 169 FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA-ASPGAPALLFVTH--HAEEIPPCFTHRLL 245 (257)
T ss_pred hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHh-cCCCCceEEEEEc--chhhcccccceEEE
Confidence 99999999999999999999999999999 999999999999999985 2334789999999 66668887788777
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
+++
T Consensus 246 l~~ 248 (257)
T COG1119 246 LKE 248 (257)
T ss_pred eeC
Confidence 765
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-35 Score=273.17 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=137.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee-eEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~-i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+|+|+||+|++|++++|+||||||||||+|+|+|+++ ++|+|. ++|..+ .+ .+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~--------------------~~---~~~~ 58 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL--------------------PL---GANS 58 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee--------------------cc---cccc
Confidence 6999999999999999999999999999999999998 899997 665421 12 2456
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
.+|+.+|+.+|+.+....+ +....+....+.+.+++.+.. ++++.+||||||||++|||||+.+|+++|||| ++
T Consensus 59 ~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~l 135 (213)
T PRK15177 59 FILPGLTGEENARMMASLY--GLDGDEFSHFCYQLTQLEQCY-TDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTG 135 (213)
T ss_pred ccCCcCcHHHHHHHHHHHc--CCCHHHHHHHHHHHhChhHHh-hchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccC
Confidence 6788899999997654322 111111122233456776554 48999999999999999999999999999999 89
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.+.+.. ++.|+|++|||+.. +..+||++++|++
T Consensus 136 D~~~~~~~~~~l~~~~----~~~~ii~vsH~~~~--~~~~~d~i~~l~~ 178 (213)
T PRK15177 136 DNATQLRMQAALACQL----QQKGLIVLTHNPRL--IKEHCHAFGVLLH 178 (213)
T ss_pred CHHHHHHHHHHHHHHh----hCCcEEEEECCHHH--HHHhcCeeEEEEC
Confidence 9999999999886542 34689999996665 8889999999876
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-35 Score=340.78 Aligned_cols=225 Identities=18% Similarity=0.107 Sum_probs=179.5
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccCC-eeeecCCcccCCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIP 96 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~~-~~v~~~vL~~isl~i~ 96 (382)
.+..|+..+......+..+..+.+|+.++++.++... ....+.|+++|++|+|+... .+ +|+|+||+|+
T Consensus 566 ~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~----vL~~inl~i~ 641 (1622)
T PLN03130 566 VLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERP----TLSNINLDVP 641 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCc----eeeceeEEec
Confidence 4567888899999999999999999999987654311 11123699999999997532 22 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-cc-ceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~-G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
+|+.++|+||||||||||+++|.|+++ .+ |+|.+. ..|+||+|++.+|+ .|++|
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~-----------------------~~Iayv~Q~p~Lfn-gTIre 697 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR-----------------------GTVAYVPQVSWIFN-ATVRD 697 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc-----------------------CeEEEEcCccccCC-CCHHH
Confidence 999999999999999999999999999 88 899743 27999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||.+.. . .++++..++++.++|.+++. ..| ..|||||||||+||||++.+|+|||||| +
T Consensus 698 NI~fg~-----~-~d~e~y~~vl~a~~L~~di~-~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 698 NILFGS-----P-FDPERYERAIDVTALQHDLD-LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred HHhCCC-----c-ccHHHHHHHHHHhCcHHHHH-hCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 996432 1 23456677777777765443 333 3499999999999999999999999999 9
Q ss_pred CCCCcchhhh-hhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATK-RLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+++.+.++ +.++... +|+|+|+|||++.. +. .+|+|++|++
T Consensus 771 LD~~~~~~I~~~~l~~~l----~~kTvIlVTH~l~~--l~-~aD~Ii~L~~ 814 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDEL----RGKTRVLVTNQLHF--LS-QVDRIILVHE 814 (1622)
T ss_pred cCHHHHHHHHHHHhhHHh----cCCEEEEEECCHhH--HH-hCCEEEEEeC
Confidence 9999988876 4566542 58999999995543 54 5778888876
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-35 Score=338.94 Aligned_cols=227 Identities=18% Similarity=0.126 Sum_probs=179.9
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccC-CeeeecCCcccCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDI 95 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~-~~~v~~~vL~~isl~i 95 (382)
..+..|+..+......+.++..+.+|+.++++.++... ....+.|+++|++|+|+.. ..+ +|+|+||+|
T Consensus 565 ~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~----vL~~inl~i 640 (1495)
T PLN03232 565 AVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKP----TLSDINLEI 640 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCc----eeeeeEEEE
Confidence 35678899999999999999999999999997664311 1112368999999999753 222 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|+.++|+||||||||||+++|.|+++ .+|.+.. +| ..|+||+|++.+|+ .|++|
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---------------------~~-~~Iayv~Q~p~Lf~-gTIre 697 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---------------------IR-GSVAYVPQVSWIFN-ATVRE 697 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---------------------ec-CcEEEEcCcccccc-ccHHH
Confidence 9999999999999999999999999999 7887631 22 38999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||.+.. ..++++..++++.+++.+++. ..| ..||||||||++||||++.+|+|||||| +
T Consensus 698 NI~fg~------~~~~e~~~~vl~~~~L~~di~-~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSa 770 (1495)
T PLN03232 698 NILFGS------DFESERYWRAIDVTALQHDLD-LLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770 (1495)
T ss_pred HhhcCC------ccCHHHHHHHHHHhCCHHHHH-hCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 996431 124456667777777755443 333 2499999999999999999999999999 9
Q ss_pred CCCCcchhhhhh-ccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRL-FSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~-l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.+.+.+++. +.... +++|+|+|||++.. +. .+|+|++|++
T Consensus 771 LD~~t~~~I~~~~l~~~l----~~kT~IlvTH~~~~--l~-~aD~Ii~L~~ 814 (1495)
T PLN03232 771 LDAHVAHQVFDSCMKDEL----KGKTRVLVTNQLHF--LP-LMDRIILVSE 814 (1495)
T ss_pred cCHHHHHHHHHHHhhhhh----cCCEEEEEECChhh--HH-hCCEEEEEeC
Confidence 999999888654 55442 58999999995543 54 5788888876
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-35 Score=310.24 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=149.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||+++|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|... ..+
T Consensus 1 ~i~i~nls~~~g~~~------~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~------i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRGVRV------LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQ------LAW 68 (638)
T ss_pred CEEEEEEEEEeCCce------eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE------EEE
Confidence 467899999996433 6999999999999999999999999999999999988 899999987520 111
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhH-------HHHHhhh---h--cCccccccccccCccccccccccccccC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL-------EELSSWM---S--EGVHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni-------~~~~~~~---~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
..+.........++|++|.+..+..++..... ..+.... . .......++.++++.+|+.+...++++.
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 11100000011455666544333333321110 0000000 0 0111234577789999996322348999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ +.|||+||||... +..+|+++++++
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~--l~~~~d~i~~L~ 220 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDF--LDPIVDKIIHIE 220 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHH--HHHhcCEEEEEe
Confidence 999999999999999999999999999 99999999999998875 4699999997776 889999999998
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 221 ~ 221 (638)
T PRK10636 221 Q 221 (638)
T ss_pred C
Confidence 6
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-34 Score=306.44 Aligned_cols=195 Identities=15% Similarity=0.053 Sum_probs=158.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+|+|+|+++++||+++|+||||||||||+++|+|..+ . +|+|.++|.++.. ..+++ .+|||+|
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~------------~~~~~-~i~yv~Q 106 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA------------KEMRA-ISAYVQQ 106 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH------------HHHhh-hceeecc
Confidence 6999999999999999999999999999999999987 3 7999999986421 11343 8999999
Q ss_pred eCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccccccccccccccC------CCccceeeecceeeeehhHH
Q 016817 163 DSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVSNIA 232 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~------~LSGGqkQRvaIAraL~~~P 232 (382)
++.+++.+||+||+.+.+...... ....+++.++++.+|+.+..+ ..+. +|||||||||+|||+|+.+|
T Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-t~vg~~~~~~~LSgGqrkRvsia~aL~~~p 185 (617)
T TIGR00955 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSGGERKRLAFASELLTDP 185 (617)
T ss_pred ccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCc-CccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence 999999999999998765321111 112245778899999986544 6665 59999999999999999999
Q ss_pred HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 233 EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 233 ~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
++|+||| +||+.+...+++.|++++ +.|+|||+++|++.. ++.+.+|++++|++ +..|+++++
T Consensus 186 ~vlllDEPtsgLD~~~~~~l~~~L~~l~---~~g~tvi~~~hq~~~-~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYSVVQVLKGLA---QKGKTIICTIHQPSS-ELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred CEEEeeCCCcchhHHHHHHHHHHHHHHH---hCCCEEEEEeCCCCH-HHHHHhceEEEeeCCeEEEECCHHHH
Confidence 9999999 999999999999999983 358999999996542 36778999999887 444554444
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-35 Score=256.32 Aligned_cols=138 Identities=18% Similarity=0.241 Sum_probs=123.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++.. +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|+++|+
T Consensus 1 l~~~~l~~~~~~~~------~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------ 62 (144)
T cd03221 1 IELENLSKTYGGKL------LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------ 62 (144)
T ss_pred CEEEEEEEEECCce------EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------
Confidence 35678999996432 5999999999999999999999999999999999999 8999999885
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..++|++| ||+||+||++||
T Consensus 63 ---------~~i~~~~~---------------------------------------------------lS~G~~~rv~la 82 (144)
T cd03221 63 ---------VKIGYFEQ---------------------------------------------------LSGGEKMRLALA 82 (144)
T ss_pred ---------EEEEEEcc---------------------------------------------------CCHHHHHHHHHH
Confidence 26888888 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|+++|||| +||+.++..+.+.|+++ +.|+|++||+++. +..+||+++++++
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~--~~~~~d~v~~l~~ 142 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYF--LDQVATKIIELED 142 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHH--HHHhCCEEEEEeC
Confidence 99999999999999 99999999999999886 3699999995554 8888999888753
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-35 Score=311.19 Aligned_cols=190 Identities=14% Similarity=0.070 Sum_probs=152.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|+++.|+++. . +|+|+||+|++|++++|+||||||||||+|+|+|+++ ++|+|.+++.
T Consensus 506 ~~~L~~~~ls~~y~~~~-~----il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--------- 571 (718)
T PLN03073 506 PPIISFSDASFGYPGGP-L----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--------- 571 (718)
T ss_pred CceEEEEeeEEEeCCCC-e----eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---------
Confidence 35899999999996432 2 5999999999999999999999999999999999999 8999987642
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+||++|++. ..+++.++........ ......+.+.++++.+++.+...++++.+|||||||||
T Consensus 572 ------------~~igyv~Q~~~--~~l~~~~~~~~~~~~~-~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv 636 (718)
T PLN03073 572 ------------VRMAVFSQHHV--DGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 636 (718)
T ss_pred ------------eeEEEEecccc--ccCCcchhHHHHHHHh-cCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence 27999999852 3345555532211111 11122355677899999974333489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|.+. .| |||+||||++. +..+||+++++++
T Consensus 637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~g-tvIivSHd~~~--i~~~~drv~~l~~ 699 (718)
T PLN03073 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-----QG-GVLMVSHDEHL--ISGSVDELWVVSE 699 (718)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-EEEEEECCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999 99999999998888764 34 99999997776 8899999999875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-35 Score=336.05 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=178.5
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhhc--------C-cCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALI--------A-PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
.+..|+..+......+..+..+.+|+.++++.++.... . ....++++|++++|+....+ +|+|+||+
T Consensus 585 ~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~l~~isl~ 660 (1522)
T TIGR00957 585 ILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPP----TLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCc----eeeeeEEE
Confidence 35679999999999999999999999999876543110 0 11379999999999754322 59999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++|++++|+||||||||||+++|+|+++ .+|+|.++| .++||+|++.+|+ .|++
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------------~i~yv~Q~~~l~~-~Ti~ 716 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-----------------------SVAYVPQQAWIQN-DSLR 716 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------------------EEEEEcCCccccC-CcHH
Confidence 99999999999999999999999999999 899999875 4899999999886 8999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccc-----------ccccccccCCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMK-----------NDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
||+.+.. .. +.++..++++.+++. .... ....+|||||||||+||||++.+|+++||||
T Consensus 717 eNI~~g~-----~~-~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 717 ENILFGK-----AL-NEKYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred HHhhcCC-----cc-CHHHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9996532 11 111222222222211 1222 5677899999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||+.+.+.+++.+.+.. ...+|+|+|+|||++.. +.. +|+|++|++
T Consensus 790 aLD~~~~~~i~~~l~~~~-~~~~~~tvIlvTH~~~~--l~~-~D~ii~l~~ 836 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPE-GVLKNKTRILVTHGISY--LPQ-VDVIIVMSG 836 (1522)
T ss_pred ccCHHHHHHHHHHHhhhh-hhhcCCEEEEEeCChhh--hhh-CCEEEEecC
Confidence 999999999999986531 01257999999997665 665 788888876
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-34 Score=260.31 Aligned_cols=140 Identities=15% Similarity=0.070 Sum_probs=122.1
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhh
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEE 148 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~ 148 (382)
.|++++|++. . ++++ +|+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.
T Consensus 4 ~~l~~~~~~~--~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--------------- 61 (177)
T cd03222 4 PDCVKRYGVF--F----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--------------- 61 (177)
T ss_pred CCeEEEECCE--E----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE---------------
Confidence 5788999543 2 4888 49999999999999999999999999999999 8999999885
Q ss_pred hhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee
Q 016817 149 HNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV 228 (382)
Q Consensus 149 ~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL 228 (382)
.++|++|++. ||||||||++|||||
T Consensus 62 -------~i~~~~q~~~------------------------------------------------LSgGq~qrv~laral 86 (177)
T cd03222 62 -------TPVYKPQYID------------------------------------------------LSGGELQRVAIAAAL 86 (177)
T ss_pred -------EEEEEcccCC------------------------------------------------CCHHHHHHHHHHHHH
Confidence 4677777531 999999999999999
Q ss_pred hhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 229 SNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 229 ~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+|++++||| +||+.++..+.+.++++. ++.+.|||+||||++. +..+||+++++++
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~~~~tiiivsH~~~~--~~~~~d~i~~l~~ 147 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLS--EEGKKTALVVEHDLAV--LDYLSDRIHVFEG 147 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HcCCCEEEEEECCHHH--HHHhCCEEEEEcC
Confidence 99999999999 999999999999999973 3334899999996655 8888999999976
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-35 Score=321.30 Aligned_cols=248 Identities=14% Similarity=0.124 Sum_probs=204.5
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhh-h-----h-c----CcCchhHHHHHhhhcccCCeeeecCCcccCCC
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-A-----L-I----APDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~----~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl 93 (382)
++.-+.-+++....+++...+.+|+.+..+++++ + . + |..+.|+++|++.+|..+... ||+||||
T Consensus 1086 lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~----VLk~is~ 1161 (1381)
T KOG0054|consen 1086 LTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPL----VLKGISF 1161 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcc----hhcCceE
Confidence 4444555667777888899999999999886543 0 1 1 235689999999999877543 6999999
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRV 172 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv 172 (382)
+|++||.+||||.+|||||||+++|.++.. .+|+|.|||.|+.+... ..+|+ +++.+||||.||. .|+
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL---------~dLRs-rlsIIPQdPvLFs-GTv 1230 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL---------HDLRS-RLSIIPQDPVLFS-GTV 1230 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH---------HHHHh-cCeeeCCCCceec-Ccc
Confidence 999999999999999999999999999999 89999999998875542 33776 9999999999998 899
Q ss_pred hhhHHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh--
Q 016817 173 HEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 173 ~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
+.|++-. ....++++.++|+.++|.+... +.|. .+|-||||-++|||||+++++||+|||
T Consensus 1231 R~NLDPf------~e~sD~~IW~ALe~~~Lk~~v~-~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1231 RFNLDPF------DEYSDDEIWEALERCQLKDVVS-SLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred ccccCcc------cccCHHHHHHHHHHhChHHHHh-hCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 9999622 2345677888999888876554 4443 499999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
++|+++-..|++.|++-. +++|||.|.| ++.++.+ +|+|++|++ ++.+.|.+.++
T Consensus 1304 AsVD~~TD~lIQ~tIR~~F----~dcTVltIAH--Rl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIREEF----KDCTVLTIAH--RLNTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ccCChHHHHHHHHHHHHHh----cCCeEEEEee--ccchhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 999999999999999863 6899999999 8877986 566777765 66777777664
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-34 Score=303.50 Aligned_cols=199 Identities=14% Similarity=0.179 Sum_probs=145.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|... ..+
T Consensus 3 ~l~i~~ls~~~~~~~------il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~------~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFSDAP------LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLI------VAR 70 (635)
T ss_pred EEEEeeEEEEeCCce------eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCE------EEE
Confidence 688999999996432 6999999999999999999999999999999999998 899999987410 000
Q ss_pred hhhhhhhHhhhccceeeEeCC-----CCChhh-------------hhhhHHHHHhh---hh--cCccccccccccCcccc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR-----GFNYNR-------------VHEGLEELSSW---MS--EGVHHNQRCLRSDDCAL 201 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~-----l~~~~t-------------v~eni~~~~~~---~~--~~~~~~~~~~~~l~~~~ 201 (382)
..+. . .+ ..+++++|... ++...+ ..+++...... +. .+.....++.++++.+|
T Consensus 71 l~q~-~-~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 71 LQQD-P-PR-NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred eccC-C-CC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 0000 0 01 12334443210 000011 12233221111 10 01112345677888999
Q ss_pred ccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChh
Q 016817 202 MKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE 278 (382)
Q Consensus 202 L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~ 278 (382)
+.. ++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . .|||+||||... +
T Consensus 148 l~~---~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-----~-~tvlivsHd~~~--l 216 (635)
T PRK11147 148 LDP---DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-----Q-GSIIFISHDRSF--I 216 (635)
T ss_pred CCC---CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-----C-CEEEEEeCCHHH--H
Confidence 862 48999999999999999999999999999999 99999999999999987 2 599999997776 8
Q ss_pred hhhhhhhhhhhh
Q 016817 279 ERLDARLKICEY 290 (382)
Q Consensus 279 ~~~~d~v~ll~~ 290 (382)
..+|++|+++++
T Consensus 217 ~~~~d~i~~L~~ 228 (635)
T PRK11147 217 RNMATRIVDLDR 228 (635)
T ss_pred HHhcCeEEEEEC
Confidence 889999999976
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-34 Score=301.33 Aligned_cols=190 Identities=16% Similarity=0.070 Sum_probs=149.2
Q ss_pred HHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee-----------eEeecCCCc
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGNS 138 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~-----------i~G~~i~~~ 138 (382)
+++++|+.+. . +|++++ .+++|+++||+||||||||||+|+|+|+++ ++|+|. ++|+++...
T Consensus 78 ~~~~~yg~~~-~----~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGVNG-F----KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecCCc-e----eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 4899997532 1 599999 899999999999999999999999999998 899997 788764311
Q ss_pred ccceeehhhhhhhHhhhccceeeEe----CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYD----SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~----~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
. ......+ ..+++.+|. +.+|. .|+.+++... ...+++.++++.+++.+.. ++.+.+|
T Consensus 152 ~-------~~~~~~~-~~~~~~~q~~~~~p~~~~-~tv~e~l~~~--------~~~~~~~~~l~~l~l~~~~-~~~~~~L 213 (590)
T PRK13409 152 F-------KKLYNGE-IKVVHKPQYVDLIPKVFK-GKVRELLKKV--------DERGKLDEVVERLGLENIL-DRDISEL 213 (590)
T ss_pred H-------HHHhccC-cceeecccchhhhhhhhc-chHHHHHHhh--------hHHHHHHHHHHHcCCchhh-cCChhhC
Confidence 0 0100001 134444554 43443 3888877421 1224567788899998655 4999999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+||+||+.+|++||||| +||+.++..+.+.|+++ .+ |+|||+||||++. +..++|+++++++
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l---~~-g~tvIivsHd~~~--l~~~~D~v~vl~~ 286 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL---AE-GKYVLVVEHDLAV--LDYLADNVHIAYG 286 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999999999999 99999999999999998 44 8999999996665 8889999998864
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-34 Score=262.28 Aligned_cols=204 Identities=13% Similarity=0.072 Sum_probs=162.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
..++.++.+.+..... ..+|+||||++.+||.+||||+||||||||+|+|+|.++ ++|+|.++|+-. ..
T Consensus 24 ~~~~~~~~~~~~~~~~---~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~----~l--- 93 (249)
T COG1134 24 KKRLKGLAKGGRKVAE---FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA----PL--- 93 (249)
T ss_pred HHHHHHHhcCCCCcce---EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe----hh---
Confidence 4455566555532221 237999999999999999999999999999999999999 899999999721 00
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
-.+|.=|| |.+|.+||+.+....++ .....+++.++..+..+|.++++ .++.++|.||+-|++
T Consensus 94 ----------i~lg~Gf~-----pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-~PvktYSSGM~aRLa 157 (249)
T COG1134 94 ----------IELGAGFD-----PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-QPVKTYSSGMYARLA 157 (249)
T ss_pred ----------hhcccCCC-----cccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-CchhhccHHHHHHHH
Confidence 02222223 56899999987765554 23334566778888999998876 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
+|-|...+|+|||+|| ..|+.-++.-.+.+.++ .+++.|||+||||++. +.++||+++++++ ...++++
T Consensus 158 Fsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~---~~~~~tiv~VSHd~~~--I~~~Cd~~i~l~~G~i~~~G~~~ 232 (249)
T COG1134 158 FSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL---VEKNKTIVLVSHDLGA--IKQYCDRAIWLEHGQIRMEGSPE 232 (249)
T ss_pred HhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH---HHcCCEEEEEECCHHH--HHHhcCeeEEEeCCEEEEcCCHH
Confidence 9999999999999999 78999899888999887 4567999999997777 9999999999987 4455555
Q ss_pred cee
Q 016817 298 GVY 300 (382)
Q Consensus 298 ~v~ 300 (382)
++.
T Consensus 233 ~vi 235 (249)
T COG1134 233 EVI 235 (249)
T ss_pred HHH
Confidence 554
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-33 Score=320.71 Aligned_cols=202 Identities=14% Similarity=0.062 Sum_probs=163.7
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc----ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~i~G~~i~~~~ 139 (382)
+++++||+++|+.+ .+. +|+|||+++++||++||+||||||||||+++|+|+.+ ++|+|.+||+++..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~----iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-- 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRV----ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-- 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcE----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--
Confidence 46889999998532 222 6999999999999999999999999999999999985 46999999986521
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Ccc---ccccccccCccccccccccccccC---
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVH---HNQRCLRSDDCALMKNDAEIDDLK--- 212 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~---~~~~~~~~l~~~~L~~~~~~~~~~--- 212 (382)
.+|+ .+|||+|++.+++.+||+||+.+.+..... ... ..++++++++.+++.+..+ +.++
T Consensus 833 -----------~~~~-~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d-~~v~~~~ 899 (1394)
T TIGR00956 833 -----------SFQR-SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD-AVVGVPG 899 (1394)
T ss_pred -----------hhhc-ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCC-CeeCCCC
Confidence 1343 899999998888889999999875432111 111 1245678899999986554 7776
Q ss_pred -CCccceeeecceeeeehhHHH-HHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 213 -SSPKYVLRRVDFAMVVSNIAE-IYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 213 -~LSGGqkQRvaIAraL~~~P~-iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+|||||||||+||++|+.+|+ +|+||| +||+.++..+++.|+++ .++|+|||++||+++. .+.+.+|++++
T Consensus 900 ~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l---a~~g~tvI~t~H~~~~-~~~~~~D~vl~ 975 (1394)
T TIGR00956 900 EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL---ADHGQAILCTIHQPSA-ILFEEFDRLLL 975 (1394)
T ss_pred CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH---HHcCCEEEEEecCCCH-HHHHhcCEEEE
Confidence 799999999999999999997 999999 99999999999999998 3468999999996653 13456888888
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 976 L~~ 978 (1394)
T TIGR00956 976 LQK 978 (1394)
T ss_pred EcC
Confidence 864
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-33 Score=243.26 Aligned_cols=217 Identities=13% Similarity=0.032 Sum_probs=171.5
Q ss_pred hhHHHHHhhhcccCCe-eeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSGDF-WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~-~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+.++|++|+|.-... -+..++|+++||+|+.||++++=||||||||||+|+|.|-|. ++|+|++.-..- .-+...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~--~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGE--WVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcc--hhhhhc
Confidence 5778999999953211 122347999999999999999999999999999999999999 999999965421 111223
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+.+.-..|++.||||.|-....|..+..+.+.+.....+ .......++..++.++++.+.+..-.|.++||||||||
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 33455556787899999998777787777777766543322 11222356677889999988777688999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
.|||.++.+=+|||||| +||..++..+.++|.+- +.+|..+|=|-||-+. -...|||++-+.
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~---Ka~GaAlvGIFHDeev--re~vadR~~~~~ 226 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA---KARGAALVGIFHDEEV--REAVADRLLDVS 226 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHH---HhcCceEEEeeccHHH--HHHHhhheeecc
Confidence 99999999999999999 99999999999999996 6789999999997655 555788887664
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-33 Score=253.29 Aligned_cols=149 Identities=16% Similarity=0.072 Sum_probs=120.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|+|+||+|++|++++|+||||||||||+|+|.+ ++|+|.++|.... .++..++|++|
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~---------------~~~~~~~~~~q---- 67 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPK---------------FSRNKLIFIDQ---- 67 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCcccc---------------cccccEEEEhH----
Confidence 6999999999999999999999999999999853 6899998765210 11124667665
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhH--HHHHHHHh---cC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNI--AEIYKALK---AG 241 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~--P~iLLLDE---~L 241 (382)
.++++.+++.....++++.+||||||||++|||||+.+ |++||||| +|
T Consensus 68 ---------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ---------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ---------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 11344455654323488999999999999999999999 99999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.|+++ .+.|.|||+|||+++. + ..||++++|++
T Consensus 121 D~~~~~~l~~~l~~~---~~~g~tvIivSH~~~~--~-~~~d~i~~l~~ 163 (176)
T cd03238 121 HQQDINQLLEVIKGL---IDLGNTVILIEHNLDV--L-SSADWIIDFGP 163 (176)
T ss_pred CHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--H-HhCCEEEEECC
Confidence 999999999999997 3368999999997654 6 46899888865
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-33 Score=256.49 Aligned_cols=212 Identities=12% Similarity=0.037 Sum_probs=165.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++|++.+..+. +. +|++|||+|++||+.+|+||||||||||.++|+|.- . ++|+|.|+|+++.+++.
T Consensus 3 ~L~I~dLhv~v~~~-ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~-- 75 (251)
T COG0396 3 MLEIKDLHVEVEGK-KE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP-- 75 (251)
T ss_pred eeEEeeeEEEecCc-hh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCH--
Confidence 67889998888654 12 799999999999999999999999999999999986 4 69999999998876543
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccccccccccccccC-CCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMKNDAEIDDLK-SSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~-~LSGG 217 (382)
.++ .| ..+.+-||.|.-++-.++.+.+.......... .....++++.++.+++.+...+|+++ .+|||
T Consensus 76 ----~ER--Ar-~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGG 148 (251)
T COG0396 76 ----DER--AR-AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGG 148 (251)
T ss_pred ----hHH--Hh-cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcc
Confidence 222 33 37889999998888788777665433221111 01234567788899998755558776 49999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh-hhhhhh-hh--
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD-ARLKIC-EY-- 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~-d~v~ll-~~-- 290 (382)
||+|..|+.+++.+|++.|||| +||..+-+.+-+.+..+ ++.|.++++|||..++ +..+. |++.+| ++
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l---r~~~~~~liITHy~rl--l~~i~pD~vhvl~~GrI 223 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL---REEGRGVLIITHYQRL--LDYIKPDKVHVLYDGRI 223 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH---hcCCCeEEEEecHHHH--HhhcCCCEEEEEECCEE
Confidence 9999999999999999999999 99999999999999998 5679999999997666 44442 555555 44
Q ss_pred cccccc
Q 016817 291 LGVSEI 296 (382)
Q Consensus 291 ~~~~~~ 296 (382)
+.+|.+
T Consensus 224 v~sG~~ 229 (251)
T COG0396 224 VKSGDP 229 (251)
T ss_pred EecCCH
Confidence 555544
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-33 Score=259.85 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=150.9
Q ss_pred CCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceee-Ee
Q 016817 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV-YD 163 (382)
Q Consensus 86 ~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~-Q~ 163 (382)
++++|+||+|++|++++++|||||||||++|+|.|++. ++|.|.++|.+..+ +...+- +++++|+ |.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~----------~~~~~~-~~~~~v~gqk 106 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR----------RREEYL-RSIGLVMGQK 106 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch----------hHHHHH-HHHHHHhhhh
Confidence 37999999999999999999999999999999999998 89999999986432 111122 2677775 33
Q ss_pred CCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
..+...+.+.+.+......+.-+ ..-.++....-+.+++++++. .+++.||-|||.|+.||.||+++|++|+|||
T Consensus 107 ~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk-~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 107 LQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred heeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh-hhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 44444445555443332222211 122345566777889988876 9999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||...+..+.+.+++.+ ++++.||+++|| .++.+...|++|++++.
T Consensus 186 gLDV~aq~~ir~Flke~n--~~~~aTVllTTH--~~~di~~lc~rv~~I~~ 232 (325)
T COG4586 186 GLDVNAQANIREFLKEYN--EERQATVLLTTH--IFDDIATLCDRVLLIDQ 232 (325)
T ss_pred CcchhHHHHHHHHHHHHH--HhhCceEEEEec--chhhHHHhhhheEEeeC
Confidence 999999999999999994 678999999999 55559999999999987
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-33 Score=322.86 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=171.6
Q ss_pred cch-hhhhhhccCCCCccccchhHHHHHHhhhhhhc---CcCchhHHHHHhhhcccCC------------------e--e
Q 016817 27 AKF-DECVKLKLDLPNVSTLTPRLRVLREMERLALI---APDGLNELRHKFLSYRSGD------------------F--W 82 (382)
Q Consensus 27 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~nvs~~y~~~~------------------~--~ 82 (382)
.|+ ..+..+...+.++.++.+|+.+++..++.... .....++++|+++.|+... . .
T Consensus 349 ~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1490)
T TIGR01271 349 MTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDG 428 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCcccccccccccccccccccccccc
Confidence 455 35777777788889999999999987653211 1123478888888884210 0 0
Q ss_pred -----e---ecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHh
Q 016817 83 -----I---PIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMR 153 (382)
Q Consensus 83 -----v---~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r 153 (382)
+ ..++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 429 ~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------------- 487 (1490)
T TIGR01271 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------------- 487 (1490)
T ss_pred ccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------------------
Confidence 0 0136999999999999999999999999999999999999 899999876
Q ss_pred hhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccc-----------ccccccCCCccceeeec
Q 016817 154 SLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----------AEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 154 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~~LSGGqkQRv 222 (382)
.++|++|++.+|+ .|++||+.+... + +.++..++++..+|.+. +. ..+..|||||||||
T Consensus 488 --~iayv~Q~~~l~~-~Ti~eNI~~g~~-~-----~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg-~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 488 --RISFSPQTSWIMP-GTIKDNIIFGLS-Y-----DEYRYTSVIKACQLEEDIALFPEKDKTVLG-EGGITLSGGQRARI 557 (1490)
T ss_pred --EEEEEeCCCccCC-ccHHHHHHhccc-c-----chHHHHHHHHHHhHHHHHHhcccccccccc-CcCCCcCHHHHHHH
Confidence 4899999999998 699999975421 1 11122223333333221 22 45678999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhh-ccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRL-FSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~-l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||||++.+|+++|||| +||+.++..+++. +..+. +|+|+|+|||+++. +. .||+|++|++
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~----~~~tvilvtH~~~~--~~-~ad~ii~l~~ 622 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM----SNKTRILVTSKLEH--LK-KADKILLLHE 622 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCCeEEEEeCChHH--HH-hCCEEEEEEC
Confidence 99999999999999999 9999999999975 56652 58999999997665 65 4889998876
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-33 Score=313.83 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=162.5
Q ss_pred hhHHHHHhhhcccCCe-------eeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecC
Q 016817 66 LNELRHKFLSYRSGDF-------WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSS 135 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~-------~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i 135 (382)
.+.++||++.+..... .-...+|+|||+++++|++++|+||||||||||+++|+|..+ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5788898887742110 000126999999999999999999999999999999999875 389999999854
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCcc---ccccccccCcccccccccccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVH---HNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~---~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
.. ...++ .+|||+|++.+++.+||+||+.+.+.... .... ..+.++++++.++|.+..+ +.+
T Consensus 947 ~~------------~~~~~-~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~-~~v 1012 (1470)
T PLN03140 947 KQ------------ETFAR-ISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-AIV 1012 (1470)
T ss_pred Ch------------HHhhh-heEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhC-Ccc
Confidence 21 11333 79999999989999999999987542211 1111 1234677889999986543 664
Q ss_pred -----CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhh
Q 016817 212 -----KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDA 283 (382)
Q Consensus 212 -----~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d 283 (382)
.+|||||||||+||++|+.+|++|+||| +||+.++..+++.|+++ .+.|+|||++||+++. ++...+|
T Consensus 1013 g~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l---~~~g~tVI~t~Hq~~~-~i~~~~D 1088 (1470)
T PLN03140 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT---VDTGRTVVCTIHQPSI-DIFEAFD 1088 (1470)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCCCH-HHHHhCC
Confidence 5899999999999999999999999999 99999999999999998 3468999999997663 2567889
Q ss_pred hhhhhh
Q 016817 284 RLKICE 289 (382)
Q Consensus 284 ~v~ll~ 289 (382)
++++|+
T Consensus 1089 ~vllL~ 1094 (1470)
T PLN03140 1089 ELLLMK 1094 (1470)
T ss_pred EEEEEc
Confidence 999986
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-33 Score=245.52 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=126.9
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
++|+++.|.+.. +++++||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 2 ~~~~~~~~~~~~------~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-------- 67 (157)
T cd00267 2 IENLSFRYGGRT------ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-------- 67 (157)
T ss_pred eEEEEEEeCCee------eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------
Confidence 567888885432 5999999999999999999999999999999999999 8999999998654221
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra 227 (382)
....+ ..++|++| |||||+||++||||
T Consensus 68 -~~~~~-~~i~~~~q---------------------------------------------------lS~G~~~r~~l~~~ 94 (157)
T cd00267 68 -LEELR-RRIGYVPQ---------------------------------------------------LSGGQRQRVALARA 94 (157)
T ss_pred -HHHHH-hceEEEee---------------------------------------------------CCHHHHHHHHHHHH
Confidence 01122 37888888 99999999999999
Q ss_pred ehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 228 VSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 228 L~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
++.+|++++||| +||+.++..+.+.|.++. +.+.|+|++||+++. +..+||+++.++
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~---~~~~tii~~sh~~~~--~~~~~d~i~~l~ 154 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELA---EEGRTVIIVTHDPEL--AELAADRVIVLK 154 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---HCCCEEEEEeCCHHH--HHHhCCEEEEEe
Confidence 999999999999 999999999999999873 347899999996555 888888887765
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-32 Score=312.97 Aligned_cols=190 Identities=15% Similarity=0.033 Sum_probs=152.3
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh----c-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceee
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL----S-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV 161 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~----~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~ 161 (382)
+|+|+|+++++||+++|+||||||||||+|+|+|+. . .+|+|.++|+++.+.. ...| +.++|++
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~----------~~~r-~~i~yv~ 144 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK----------KHYR-GDVVYNA 144 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH----------hhcC-ceeEEec
Confidence 699999999999999999999999999999999986 3 6999999998653211 1123 3799999
Q ss_pred EeCCCCChhhhhhhHHHHHhhhhc-----Ccccc---cc-ccccCcccccccccc----ccccCCCccceeeecceeeee
Q 016817 162 YDSRGFNYNRVHEGLEELSSWMSE-----GVHHN---QR-CLRSDDCALMKNDAE----IDDLKSSPKYVLRRVDFAMVV 228 (382)
Q Consensus 162 Q~~~l~~~~tv~eni~~~~~~~~~-----~~~~~---~~-~~~~l~~~~L~~~~~----~~~~~~LSGGqkQRvaIAraL 228 (382)
|+..+++.+||+|++.+.+..... ....+ ++ ++.+++.+||.+..+ +..+.+|||||||||+||++|
T Consensus 145 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH
Confidence 999999999999999875432111 11111 12 245788899976433 234678999999999999999
Q ss_pred hhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 229 SNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 229 ~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+|++|+||| +||+.++..+.+.|++++ ++.|+|||+++|++. +++.+++|++++|++
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la--~~~g~tvii~~Hq~~-~~i~~l~D~v~~L~~ 286 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSA--NILDTTPLVAIYQCS-QDAYELFDKVIVLYE 286 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH--HhcCCEEEEEecCCC-HHHHHhhceEEEEeC
Confidence 99999999999 999999999999999984 445899999999653 237788999999876
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-32 Score=307.29 Aligned_cols=188 Identities=13% Similarity=0.032 Sum_probs=153.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+|+|+|+.|++||+++|+||||||||||||+|+|+++ + +|+|.++|+++.+.. .| +.++|++|
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~------------~~-~~i~yv~Q 246 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV------------PR-KTSAYISQ 246 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc------------cc-ceeEEecc
Confidence 7999999999999999999999999999999999987 6 899999998653221 12 37999999
Q ss_pred eCCCCChhhhhhhHHHHHhhhhcCc--------ccc---------------------------ccccccCccccccccc-
Q 016817 163 DSRGFNYNRVHEGLEELSSWMSEGV--------HHN---------------------------QRCLRSDDCALMKNDA- 206 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~~~~--------~~~---------------------------~~~~~~l~~~~L~~~~- 206 (382)
+..+++.+||+|++.+.+...+.+. ..+ ..++.+++.+||.+..
T Consensus 247 ~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~ 326 (1470)
T PLN03140 247 NDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKD 326 (1470)
T ss_pred cccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccC
Confidence 9999999999999987653221000 000 0124567788997532
Q ss_pred ---cccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 207 ---EIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 207 ---~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
.++.+.+|||||||||+||++|+.+|++|+||| +||+.++..+.+.|++++ +..|+|+|+++|++. .++..
T Consensus 327 t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la--~~~g~Tviis~Hqp~-~~i~~ 403 (1470)
T PLN03140 327 TIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV--HLTEATVLMSLLQPA-PETFD 403 (1470)
T ss_pred ceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHH--HhcCCEEEEEecCCC-HHHHH
Confidence 246788999999999999999999999999999 999999999999999984 445899999999653 23778
Q ss_pred hhhhhhhhhh
Q 016817 281 LDARLKICEY 290 (382)
Q Consensus 281 ~~d~v~ll~~ 290 (382)
++|+|++|++
T Consensus 404 lfD~vilL~~ 413 (1470)
T PLN03140 404 LFDDIILLSE 413 (1470)
T ss_pred HhheEEEeeC
Confidence 8999999876
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-32 Score=281.08 Aligned_cols=189 Identities=15% Similarity=0.141 Sum_probs=157.9
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|.++|++++|++.. +|+++||+|.+|+.+||||+||||||||||+|+|... ++|+|...+.
T Consensus 2 ~~i~~~~ls~~~g~~~------l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------- 65 (530)
T COG0488 2 SMITLENLSLAYGDRP------LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------- 65 (530)
T ss_pred ceEEEeeeEEeeCCce------eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------
Confidence 3688999999995443 5999999999999999999999999999999999998 8999998653
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-------------------------------cCcccccc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-------------------------------EGVHHNQR 192 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-------------------------------~~~~~~~~ 192 (382)
.++||+.|++.+.+..||.+.+........ .+...+.+
T Consensus 66 -----------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 66 -----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred -----------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 279999999999888888886644321100 00011234
Q ss_pred ccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEE
Q 016817 193 CLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILIL 269 (382)
Q Consensus 193 ~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIii 269 (382)
+..++.-+|+.+. ++++.+||||||.||+||+||+.+|++||||| .||..+..-+.+.|.+. .| |+|+|
T Consensus 135 ~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiV 206 (530)
T COG0488 135 AEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVV 206 (530)
T ss_pred HHHHHhcCCCCcc--cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEE
Confidence 5566777788755 48999999999999999999999999999999 99999999999999987 57 99999
Q ss_pred ecCCCCChhhhhhhhhhhhhh
Q 016817 270 THGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 270 THd~~l~~~~~~~d~v~ll~~ 290 (382)
|||-.+ ..++|++|+-++.
T Consensus 207 SHDR~F--Ld~V~t~I~~ld~ 225 (530)
T COG0488 207 SHDRYF--LDNVATHILELDR 225 (530)
T ss_pred eCCHHH--HHHHhhheEEecC
Confidence 998777 8899999998876
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-33 Score=295.92 Aligned_cols=211 Identities=10% Similarity=0.029 Sum_probs=152.9
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh----cccceeeeEeecCCCccc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL----SRSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~----~~~G~I~i~G~~i~~~~~ 140 (382)
.+|+++|++++|++.. +|+|+||+|++|+++|||||||||||||||+|+|.. +++|+|.+.++.+... .
T Consensus 176 ~~I~i~nls~~y~~~~------ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~-~ 248 (718)
T PLN03073 176 KDIHMENFSISVGGRD------LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD-D 248 (718)
T ss_pred eeEEEceEEEEeCCCE------EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC-C
Confidence 4799999999996433 599999999999999999999999999999999864 3689998776643211 1
Q ss_pred cee-----ehhhhhhhHhhhccceeeEeCCCCCh----------------hhhhhhHHHHHhhhh--cCccccccccccC
Q 016817 141 TIT-----MYMEEHNVMRSLQSGFCVYDSRGFNY----------------NRVHEGLEELSSWMS--EGVHHNQRCLRSD 197 (382)
Q Consensus 141 ~~~-----~~~~~~~~~r~~~ig~v~Q~~~l~~~----------------~tv~eni~~~~~~~~--~~~~~~~~~~~~l 197 (382)
... ........++...+++++|++.+... ..+.+-+......+. .....++++.+++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 110 00111112222367888886533211 011111111111111 1112335667788
Q ss_pred ccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 198 DCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 198 ~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
+.+|+.+...++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ +.|||+||||.+
T Consensus 329 ~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~ 402 (718)
T PLN03073 329 AGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHARE 402 (718)
T ss_pred HHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHH
Confidence 889986444458899999999999999999999999999999 99999999999999885 579999999766
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
. +..+|++++++++
T Consensus 403 ~--l~~~~d~i~~l~~ 416 (718)
T PLN03073 403 F--LNTVVTDILHLHG 416 (718)
T ss_pred H--HHHhCCEEEEEEC
Confidence 6 8889999999986
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-31 Score=236.39 Aligned_cols=187 Identities=13% Similarity=0.056 Sum_probs=153.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++.+|++..-+.. . ++.++||++.+||++-|.||||||||||+|+|+|+.+ ++|+|+++|..+.....
T Consensus 2 ~L~a~~L~~~R~e~--~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~---- 71 (209)
T COG4133 2 MLEAENLSCERGER--T----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE---- 71 (209)
T ss_pred cchhhhhhhccCcc--e----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh----
Confidence 56778887776433 3 5999999999999999999999999999999999999 89999999986643221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.++. ..-|+--.+.+=+.+|++||+.+..... +......+.++++.+||.... |.+..+||-|||+||||
T Consensus 72 ------~~~~-~l~yLGH~~giK~eLTa~ENL~F~~~~~--~~~~~~~i~~Al~~vgL~g~~-dlp~~~LSAGQqRRvAl 141 (209)
T COG4133 72 ------SYHQ-ALLYLGHQPGIKTELTALENLHFWQRFH--GSGNAATIWEALAQVGLAGLE-DLPVGQLSAGQQRRVAL 141 (209)
T ss_pred ------hHHH-HHHHhhccccccchhhHHHHHHHHHHHh--CCCchhhHHHHHHHcCccccc-ccchhhcchhHHHHHHH
Confidence 1222 5566666677778899999998765333 223456788899999999765 49999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
||-++..+++.|||| +||......+-.++..- ..+|--||.+||.+.-
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H---~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH---AAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHH---hcCCCEEEEecCCccC
Confidence 999999999999999 99999999999999875 4578889999996544
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-32 Score=311.32 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=132.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.+. +.+||++|++.
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----------------------~~i~yv~Q~~~ 731 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----------------------RSIAYVPQQAW 731 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------------------CeEEEEeCCCc
Confidence 6999999999999999999999999999999999999 89999752 27999999999
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccc---------cCccc--cccccccccccCCCccceeeecceeeeehhHHHH
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLR---------SDDCA--LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEI 234 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~---------~l~~~--~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~i 234 (382)
+|+ .|++||+.+... .+.++..+ .++.+ |+...+. +++.+|||||||||+|||||+.+|++
T Consensus 732 l~~-~Tv~enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~i 803 (1560)
T PTZ00243 732 IMN-ATVRGNILFFDE------EDAARLADAVRVSQLEADLAQLGGGLETEIG-EKGVNLSGGQKARVSLARAVYANRDV 803 (1560)
T ss_pred cCC-CcHHHHHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccchHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 886 799999975321 01111122 22333 4444444 67889999999999999999999999
Q ss_pred HHHHh---cCCCCcchhhhhhc-cCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 235 YKALK---AGDSKPLDATKRLF-SAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 235 LLLDE---~LD~~~~~~i~~~l-~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||| +||+.+...+++.+ ... . .|+|+|+||||++. +. .+|+|++|++
T Consensus 804 llLDEP~saLD~~~~~~i~~~~~~~~---~-~~~TvIlvTH~~~~--~~-~ad~ii~l~~ 856 (1560)
T PTZ00243 804 YLLDDPLSALDAHVGERVVEECFLGA---L-AGKTRVLATHQVHV--VP-RADYVVALGD 856 (1560)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHh---h-CCCEEEEEeCCHHH--HH-hCCEEEEEEC
Confidence 99999 99999988887643 332 1 58999999997665 64 6889988876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-31 Score=294.94 Aligned_cols=226 Identities=17% Similarity=0.081 Sum_probs=182.0
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhhh---h-----cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---L-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
+..|+..+.++++.+-++.++.+|+.+.+..++.. . .+.+..++++|.+++....... +.|+||||+|+
T Consensus 469 Lr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~---~tL~dIn~~i~ 545 (1381)
T KOG0054|consen 469 LRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPE---PTLKDINFEIK 545 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCc---ccccceeEEec
Confidence 34688888888888889999999999999988751 1 1334579999999998763221 25999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+|+.+||+||-||||||||.+|.|..+ .+|+|.++| .++||+|.|.+++ .||+||
T Consensus 546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-----------------------siaYv~Q~pWI~n-gTvreN 601 (1381)
T KOG0054|consen 546 KGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-----------------------SVAYVPQQPWIQN-GTVREN 601 (1381)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-----------------------eEEEeccccHhhC-CcHHHh
Confidence 999999999999999999999999999 899999987 4899999999998 899999
Q ss_pred HHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|.++. .-++++.+++++...|.+++. ..|. +|||||||||+||||+.++++|+|||+ ++
T Consensus 602 ILFG~------~~d~~rY~~Vi~aC~L~~Dle-~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 602 ILFGS------PYDEERYDKVIKACALKKDLE-ILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred hhcCc------cccHHHHHHHHHHccCHhHHh-hcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 96532 224456666777777765544 4443 499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|.+.-+.+++..-.- .-+++|+|+|||.+.. . ..+|.|++|++
T Consensus 675 Dahvg~~if~~ci~~---~L~~KT~ILVTHql~~--L-~~ad~Iivl~~ 717 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRG---LLRGKTVILVTHQLQF--L-PHADQIIVLKD 717 (1381)
T ss_pred hHhhhHHHHHHHHHh---hhcCCEEEEEeCchhh--h-hhCCEEEEecC
Confidence 999888877554432 2268999999994443 4 46777888877
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-31 Score=246.05 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=125.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHH-HHHHHhhcccceeeeEe-ecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLV-NLMYSVLSRSGLVLFAQ-TSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl-~~i~Gl~~~~G~I~i~G-~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+|+++||+|++||++||+||||||||||+ ..|. .+|++.+.. .+............++....+....++.+|++
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCC
Confidence 79999999999999999999999999996 3332 245554321 10000000000111111112222345556654
Q ss_pred C--CCChhhhhh---hHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHH--HHHHH
Q 016817 165 R--GFNYNRVHE---GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKA 237 (382)
Q Consensus 165 ~--l~~~~tv~e---ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLL 237 (382)
. +.+..++.. ........+ ..... ....++++.+++.+...++++.+|||||||||+|||||+.+| ++|||
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-ARVGI-RERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2 233334332 222111111 11111 122457888999753334899999999999999999999998 59999
Q ss_pred Hh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 238 LK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 238 DE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|| +||+.++..+.+.|+++ ++.|.|+|+||||++. + .+||++++|+
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~---~~~g~tii~itH~~~~--~-~~~d~i~~l~ 212 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRL---RDLGNTVLVVEHDEDT--I-RAADHVIDIG 212 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHH---HhCCCEEEEEEeCHHH--H-HhCCEEEEeC
Confidence 99 99999999999999998 3468999999997654 6 4899999984
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-30 Score=285.45 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=176.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..+.++|+++.|+.... |++++||.|++||+.|++|||||||||++|+|.|..+ ++|+++++|.++.....
T Consensus 563 ~~~~~~~L~k~y~~~~~-----Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~--- 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-----AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD--- 634 (885)
T ss_pred ceEEEcceeeeecchhh-----hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc---
Confidence 56788999999976542 5999999999999999999999999999999999999 89999999997753221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....+ +.+||+||...+++.+|.+|.+...+...+ ....-++.+++.++.++|.++.. ++...+|||+|+|+
T Consensus 635 -----~~~~~-~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-~~~~~ySgG~kRkL 707 (885)
T KOG0059|consen 635 -----FQQVR-KQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-KQVRTYSGGNKRRL 707 (885)
T ss_pred -----hhhhh-hhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-cchhhCCCcchhhH
Confidence 11133 389999999999999999999998875544 22233455788999999998876 88999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|.||+.+|++++||| |+||..++.+++++.++ ++.|+.||++|| .+++++..|+|+.+|-+
T Consensus 708 s~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~---~k~g~aiiLTSH--sMeE~EaLCtR~aImv~ 773 (885)
T KOG0059|consen 708 SFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARL---RKNGKAIILTSH--SMEEAEALCTRTAIMVI 773 (885)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEcC--CHHHHHHHhhhhheeec
Confidence 99999999999999999 99999999999999998 456679999999 55569999999998876
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-30 Score=273.07 Aligned_cols=206 Identities=17% Similarity=0.076 Sum_probs=164.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc----ccceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~i~G~~i~~~~~~ 141 (382)
.+.++|++.....+.. ..+.+|+|||.++++||++||+||||||||||+++|+|... .+|+|++||+...
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~----- 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD----- 98 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc-----
Confidence 3556666666544320 01126999999999999999999999999999999999986 3899999996321
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccccccccccccccC-----
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMKNDAEIDDLK----- 212 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~----- 212 (382)
...++. ..|||.||..+++.+||+|.+.+.+...... ...+++++++++.+||.+ ..|..++
T Consensus 99 -------~~~~~~-~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~~~t~ig~~~~r 169 (613)
T KOG0061|consen 99 -------SRSFRK-ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-CADTLIGNPGIR 169 (613)
T ss_pred -------hhhhhh-eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-hccceecCCCCC
Confidence 112443 8999999999999999999998876432221 233467888999999984 4457665
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
++|||||+||+||.-|+++|.||+||| +||..+..++.+.|++++ + .|+|||++-|.+.- ++.+.-|++++|.
T Consensus 170 giSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA--~-~grtVi~tIHQPss-~lf~lFD~l~lLs 245 (613)
T KOG0061|consen 170 GLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA--R-SGRTVICTIHQPSS-ELFELFDKLLLLS 245 (613)
T ss_pred ccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH--h-CCCEEEEEEeCCcH-HHHHHHhHhhhhc
Confidence 599999999999999999999999999 999999999999999995 4 49999999998765 3666777777776
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 246 ~ 246 (613)
T KOG0061|consen 246 E 246 (613)
T ss_pred C
Confidence 5
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-30 Score=265.09 Aligned_cols=188 Identities=18% Similarity=0.137 Sum_probs=158.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
...++++|+++.|+++ +. +++++||.|.+|+.+||+||||+|||||||+|+|... .+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~~~-~~----l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--------- 384 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RL----LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--------- 384 (530)
T ss_pred CeeEEEeccccccCCC-ce----eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---------
Confidence 4578999999999765 22 5999999999999999999999999999999999988 8999987533
Q ss_pred eehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
-++||..|+. .+++..|+.+++.... +......++..|..+++......+++..||||||-|
T Consensus 385 ------------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~R 447 (530)
T COG0488 385 ------------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKAR 447 (530)
T ss_pred ------------eEEEEEEehhhhcCccCcHHHHHHhhC-----ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHH
Confidence 2799999986 4456667777774321 111256678889999997544458999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+|+.++.+|.+||||| .||..+...+.+.|.+. .-|||+||||-.+ +.+.|++++.+.+
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f------~Gtvl~VSHDr~F--l~~va~~i~~~~~ 511 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF------EGTVLLVSHDRYF--LDRVATRIWLVED 511 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC------CCeEEEEeCCHHH--HHhhcceEEEEcC
Confidence 999999999999999999 99999999999999997 4599999998888 8899999888874
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-31 Score=225.06 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=105.7
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++... .....+ ..++|++|++.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~---------~~~~~~-~~i~~~~~~~~~ 70 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI---------DIEELR-RRIGYVPQDPQL 70 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS---------HHHHHH-HTEEEEESSHCH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc---------cccccc-cccccccccccc
Confidence 689999999999999999999999999999999999 899999999977541 112234 489999999999
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc---ccccCCCccceeeecceeeeehhHHHHHHHHh
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE---IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE 239 (382)
++..|+.+|.. .+++.++++.+++.+... ++.+.+|||||||||+|||||+.+|++|||||
T Consensus 71 ~~~~tv~~~~~------------~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDE 134 (137)
T PF00005_consen 71 FPGLTVRENES------------DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDE 134 (137)
T ss_dssp HTTSBHHHHHH------------HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEES
T ss_pred ccccccccccc------------cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99888988821 123445556666554322 24449999999999999999999999999999
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-29 Score=221.14 Aligned_cols=205 Identities=18% Similarity=0.106 Sum_probs=163.1
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~ 167 (382)
|-.+|.++..||++-+|||||||||||+-.++|+.+-+|+|.++|.++.... ..+++ + +-+|..|+..-.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~------~~eLA---r-hRAYLsQqq~p~ 84 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWS------ATELA---R-HRAYLSQQQTPP 84 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHh------HhHHH---H-HHHHHhhccCCc
Confidence 6778999999999999999999999999999999999999999999764322 22222 2 557888875444
Q ss_pred ChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehh-------HHHHHHHHh-
Q 016817 168 NYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN-------IAEIYKALK- 239 (382)
Q Consensus 168 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~-------~P~iLLLDE- 239 (382)
..+.|+..+.... ........+..+..++++.+.+. |..++|||||-|||-+|-..++ ..++||+||
T Consensus 85 f~mpV~~YL~L~q----P~~~~a~~i~~i~~~L~l~DKL~-Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 85 FAMPVWHYLTLHQ----PDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred chhhhhhhhhhcC----chHHHHHHHHHHHhhhcccchhh-hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 4577777664211 11112234566778899998887 9999999999999999988765 246899999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceeeEEEecc-ccCCC
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYDIVCLTE-YGFPA 312 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~~~~l~~-~~~~~ 312 (382)
+||...+..+..+|.+++ ..|.+|||++||++. ..+-+|++++++. +..|+.++|++.+.+.+ |+...
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c---~~G~~vims~HDLNh--TLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~fg~~f 233 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALC---QQGLAIVMSSHDLNH--TLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNF 233 (248)
T ss_pred CcchhHHHHHHHHHHHHHHH---hCCcEEEEeccchhh--HHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHhccce
Confidence 999999999999999984 479999999998887 7888999999986 77888899998877766 76644
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-29 Score=230.91 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=122.2
Q ss_pred c-ccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---------cceeeeEeecCCCcccceeehhhhhhhHhhhc
Q 016817 88 I-QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---------SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156 (382)
Q Consensus 88 L-~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---------~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ 156 (382)
+ ++++|++++| +++|+||||||||||+++|+|+.+ . .|++.+.|++.... . .+ ..
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~-~~ 77 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---------A---NF-AE 77 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---------C---ce-EE
Confidence 5 6789999999 999999999999999999999985 3 23566666543210 0 12 38
Q ss_pred cceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh----hHH
Q 016817 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS----NIA 232 (382)
Q Consensus 157 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~----~~P 232 (382)
++|+||++..+. .. ...+++.++++. .+. .++.+.+||||||||++|||+|+ .+|
T Consensus 78 v~~vfq~~~~~~--~~---------------~~~~~~~~~l~~---~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~ 136 (197)
T cd03278 78 VTLTFDNSDGRY--SI---------------ISQGDVSEIIEA---PGK-KVQRLSLLSGGEKALTALALLFAIFRVRPS 136 (197)
T ss_pred EEEEEEcCCCce--eE---------------EehhhHHHHHhC---CCc-cccchhhcCHHHHHHHHHHHHHHHhccCCC
Confidence 999999987651 00 012234445555 323 34889999999999999999997 456
Q ss_pred HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 233 EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 233 ~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++++||| +||+..+..+.+.|+++. ++.|||+||||++. + .+||+++.+..
T Consensus 137 ~illlDEP~~~LD~~~~~~l~~~l~~~~----~~~tiIiitH~~~~--~-~~~d~v~~~~~ 190 (197)
T cd03278 137 PFCVLDEVDAALDDANVERFARLLKEFS----KETQFIVITHRKGT--M-EAADRLYGVTM 190 (197)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHH--H-hhcceEEEEEe
Confidence 9999999 999999999999999983 36899999997654 5 47888877654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-29 Score=245.29 Aligned_cols=235 Identities=15% Similarity=0.071 Sum_probs=179.3
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhh---h--h-cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL---A--L-IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
+..|+.+++-....+-.+.++..++.++..-++. + . .+.-..|+++||.|.|.... . -+..||++|++|
T Consensus 275 lr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~--F---hvgPiNl~ikrG 349 (546)
T COG4615 275 LRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNA--F---HVGPINLTIKRG 349 (546)
T ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCccc--c---eecceeeEEecC
Confidence 4567777776666677778888888776553321 0 0 01134799999999997664 2 288999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|++-|+|.||||||||++++.|+++ ++|+|++||+++.. .++.++|. -++-||-|+.||+.+--.|
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~---------e~ledYR~-LfSavFsDyhLF~~ll~~e--- 416 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA---------EQLEDYRK-LFSAVFSDYHLFDQLLGPE--- 416 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC---------CCHHHHHH-HHHHHhhhHhhhHhhhCCc---
Confidence 9999999999999999999999999 89999999997753 33445776 8999999999998532222
Q ss_pred HHHhhhhcCccccccccccCcccccccc--cccc--ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhh
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKND--AEID--DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATK 250 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~--~~~~--~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~ 250 (382)
+.+..+.+..+++++.+.+. ++|. .+-.||-|||+|+|+--||+-+-+|+++|| .-||.-++.+.
T Consensus 417 --------~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY 488 (546)
T COG4615 417 --------GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFY 488 (546)
T ss_pred --------cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHH
Confidence 22333455566666655432 1222 244699999999999999999999999999 79999999998
Q ss_pred hhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 251 RLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 251 ~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+.-+. +++|+||+.||||... ..++||++.+++
T Consensus 489 ~~lLp~L--K~qGKTI~aIsHDd~Y---F~~ADrll~~~~ 523 (546)
T COG4615 489 QVLLPLL--KEQGKTIFAISHDDHY---FIHADRLLEMRN 523 (546)
T ss_pred HHHhHHH--HHhCCeEEEEecCchh---hhhHHHHHHHhc
Confidence 8776664 7789999999997544 457899998887
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-28 Score=230.66 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=138.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHH-----Hhhc-----------------ccceeeeEeecCCCcccceee
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-----SVLS-----------------RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~-----Gl~~-----------------~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+|+|++|+.|.+++|.|+||||||||++.+. .... ..--|.+|+.++...+.....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 499999999999999999999999999999662 1110 011356677666433221110
Q ss_pred -hhhhhhhHhh---------------hccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccc
Q 016817 145 -YMEEHNVMRS---------------LQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEI 208 (382)
Q Consensus 145 -~~~~~~~~r~---------------~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~ 208 (382)
+..-...+|. ..+.|..++...+..+|+.|++.++.... ..+++.++++.+||.....+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-----~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-----KIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-----hHHHHHHHHHHcCCchhhhc
Confidence 1111111111 13556556555556789999987654221 12345678889999863234
Q ss_pred cccCCCccceeeecceeeeehhH---HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNI---AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~---P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
+++.+|||||+||++|||+|+.+ |+++|||| +||+..+..+.+.|+++ .+.|.|||+||||++. +. .+
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l---~~~g~tvIiitH~~~~--i~-~a 238 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL---VDKGNTVVVIEHNLDV--IK-CA 238 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HH-hC
Confidence 89999999999999999999996 79999999 99999999999999998 4468999999997765 65 68
Q ss_pred hhhhhhh
Q 016817 283 ARLKICE 289 (382)
Q Consensus 283 d~v~ll~ 289 (382)
|+++.+.
T Consensus 239 D~ii~Lg 245 (261)
T cd03271 239 DWIIDLG 245 (261)
T ss_pred CEEEEec
Confidence 8888883
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-26 Score=209.74 Aligned_cols=225 Identities=14% Similarity=0.173 Sum_probs=170.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcc-----cceeeeEeecCCCcc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSR-----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~-----~G~I~i~G~~i~~~~ 139 (382)
+.+.++|++..+......++ +++++|+++++||+-|+||.||||||-..|.|+|..++ .-+..|++.++-.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK--~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~-- 77 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVK--AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLR-- 77 (330)
T ss_pred CcccccceEEEEecCCCceE--eeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhc--
Confidence 35778899988865554453 79999999999999999999999999999999999774 3455566655432
Q ss_pred cceeehhhhhhhHhhhccceeeEeCC--CCChhhhhh-hHHHHHhhhhcC------ccccccccccCcccccccc--ccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHE-GLEELSSWMSEG------VHHNQRCLRSDDCALMKND--AEI 208 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~e-ni~~~~~~~~~~------~~~~~~~~~~l~~~~L~~~--~~~ 208 (382)
+.+.+++.+-.+.|+|+||+|. |-|..+|.. .|..+..+...+ .=.+.++.+++.++|+.++ +..
T Consensus 78 ----L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 78 ----LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred ----CChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 3344444444457999999974 556666543 333332221111 0123456677889999753 334
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
.||.+|.-||-|+|.||.|++.+|++||.|| ++|+.++.+++.+|.++. +.+|.||++++||+.. +...||++
T Consensus 154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mN--Qn~~TtILL~s~Dl~~--is~W~d~i 229 (330)
T COG4170 154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLN--QNSNTTILLISHDLQM--ISQWADKI 229 (330)
T ss_pred hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhh--ccCCceEEEEcccHHH--HHHHhhhe
Confidence 8999999999999999999999999999999 999999999999999984 6689999999997666 99999998
Q ss_pred hhhhh---cccccccceee
Q 016817 286 KICEY---LGVSEISGVYD 301 (382)
Q Consensus 286 ~ll~~---~~~~~~~~v~~ 301 (382)
-++-- +.+++.+++..
T Consensus 230 ~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 230 NVLYCGQTVESAPSEELVT 248 (330)
T ss_pred EEEEecccccccchhHHhc
Confidence 87753 66666555553
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-27 Score=220.84 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=119.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----------------ccc--------eeeeEeecCCCcccc
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----------------RSG--------LVLFAQTSSGNSSHT 141 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----------------~~G--------~I~i~G~~i~~~~~~ 141 (382)
++++++ |++++|+||||||||||+++|++++. .+| +|.+++.+-...
T Consensus 17 ~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~--- 88 (243)
T cd03272 17 VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP--- 88 (243)
T ss_pred ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC---
Confidence 477766 78999999999999999999996542 233 334433211000
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCCh-hhhhhhHHHHHhhhhcCcccc---ccccccCccccccccccccccCCCccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNY-NRVHEGLEELSSWMSEGVHHN---QRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~-~tv~eni~~~~~~~~~~~~~~---~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
. ......+++ .+|+++|++.+++. .+..+...... ..+...... ....+..+.+++.+.. ++++.+||||
T Consensus 89 --~-~~~~~~i~r-~ig~~~~~~~l~~~~~t~~ei~~~l~-~~gl~~~~~~~~~~qg~i~~l~~l~~~~-~~~~~~lS~G 162 (243)
T cd03272 89 --I-DKEEVRLRR-TIGLKKDEYFLDKKNVTKNDVMNLLE-SAGFSRSNPYYIVPQGKINSLTNMKQDE-QQEMQQLSGG 162 (243)
T ss_pred --C-CCCEEEEEE-EEECCCCEEEECCeEcCHHHHHHHHH-HcCCCCCCCcEEEEcCchHHhhhccccc-cccccccCHH
Confidence 0 000111333 68999998877763 45444433322 221111000 0112334445555443 3889999999
Q ss_pred eeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 218 qkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||++|||||+. +|++||+|| +||+.++..+++.|+++ . .+.|+|++||+. ++.++||+++++.
T Consensus 163 ~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~---~-~~~~ii~~~h~~---~~~~~~d~i~~l~ 234 (243)
T cd03272 163 QKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL---S-DGAQFITTTFRP---ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH---h-CCCEEEEEecCH---HHHhhCCEEEEEE
Confidence 9999999999974 589999999 99999999999999997 2 267888888843 3667899888774
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-27 Score=215.54 Aligned_cols=185 Identities=15% Similarity=0.081 Sum_probs=125.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCC-ceeeeeeecccCCCchhHHHHHHHhh-c-ccceeeeEe-ecCCCcccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIP-PVITILLMGFSGSGKSSLVNLMYSVL-S-RSGLVLFAQ-TSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~-~Ge~~alvGpnGsGKSTLl~~i~Gl~-~-~~G~I~i~G-~~i~~~~~~ 141 (382)
.|+++|+. +|... ++++|+.. +|++++|+||||||||||+++|++.+ . ..+....+. .+...
T Consensus 5 ~i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~---- 70 (213)
T cd03279 5 KLELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFA---- 70 (213)
T ss_pred EEEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhc----
Confidence 35667776 55332 34466654 58999999999999999999999644 3 334443321 00000
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccc--cCccccccccccccccCCCcccee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLR--SDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~--~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
. ...+ ..++++||+.... .++.... +... +...+ .++..++.+.+. +++.+|||||+
T Consensus 71 ----~---~~~~-~~v~~~f~~~~~~--~~~~r~~---------gl~~-~~~~~~~~l~~g~l~~~l~-~~~~~lS~G~~ 129 (213)
T cd03279 71 ----P---GEDT-AEVSFTFQLGGKK--YRVERSR---------GLDY-DQFTRIVLLPQGEFDRFLA-RPVSTLSGGET 129 (213)
T ss_pred ----C---CCcc-EEEEEEEEECCeE--EEEEEec---------CCCH-HHHHHhhhhhhcchHHHhc-CCccccCHHHH
Confidence 0 0012 3789999986321 1221111 1111 11111 234444555554 88999999999
Q ss_pred eecceeeeehhHH----------HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIA----------EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 220 QRvaIAraL~~~P----------~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
||++|||||+.+| ++||||| +||+.++..+.+.|+++ ++++.|+|+||||++. +..+|++++
T Consensus 130 ~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~---~~~~~tii~itH~~~~--~~~~~~~i~ 204 (213)
T cd03279 130 FLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI---RTENRMVGVISHVEEL--KERIPQRLE 204 (213)
T ss_pred HHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEECchHH--HHhhCcEEE
Confidence 9999999999755 6899999 99999999999999988 3458999999997766 888999999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
++++
T Consensus 205 ~~~~ 208 (213)
T cd03279 205 VIKT 208 (213)
T ss_pred EEec
Confidence 9875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-27 Score=219.44 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=130.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
|+++|.. +|++.. +++++++ ++++|+||||||||||+++|... +|.++.
T Consensus 6 l~l~nfk-~~~~~~------~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~---------~G~~~~---------- 54 (212)
T cd03274 6 LVLENFK-SYAGEQ------VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV---------FGFRAS---------- 54 (212)
T ss_pred EEEECcc-cCCCCe------eeccCCC-----CeEEEECCCCCCHHHHHHHHHHH---------hccCHH----------
Confidence 3444543 665333 5888888 79999999999999999999732 343211
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-----h-cCcccc-cc----ccccCccccccccccccccCCCc
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-----S-EGVHHN-QR----CLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-----~-~~~~~~-~~----~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
..|.+++++++|+..+++.+++.++...+.... . .+.... .. ..++++.+++.+... +++..||
T Consensus 55 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~-~~~~~lS 129 (212)
T cd03274 55 ----KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW-KNISNLS 129 (212)
T ss_pred ----HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccc-cchhhcC
Confidence 022236888888887777777777654332110 0 111111 11 256778888876654 8899999
Q ss_pred cceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 216 GGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
+|||||++||||++. +|+++++|| +||+.++..+.+.|+++. ++.|+|++||+. ++.++||+++++
T Consensus 130 ~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~----~~~~~iivs~~~---~~~~~~d~v~~~ 202 (212)
T cd03274 130 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT----KNAQFIVISLRN---NMFELADRLVGI 202 (212)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECcH---HHHHhCCEEEEE
Confidence 999999999999974 479999999 999999999999999972 467999999963 366789999887
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
..
T Consensus 203 ~~ 204 (212)
T cd03274 203 YK 204 (212)
T ss_pred Ee
Confidence 53
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-27 Score=240.85 Aligned_cols=188 Identities=15% Similarity=0.057 Sum_probs=149.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+..|+++|++..-+++. . .|++.||+|++||.+-|.||||||||||+|+|+|++| -+|+|.+-..
T Consensus 390 ~~~i~~~nl~l~~p~~~-~----ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~--------- 455 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-T----LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD--------- 455 (604)
T ss_pred cceeEEeeeeEECCCCC-e----eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC---------
Confidence 47899999999988766 2 5999999999999999999999999999999999999 8999876421
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc-----ccccCCCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE-----IDDLKSSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~~LSGG 217 (382)
..+-|+||.|++.. .|.+|.+.+.. ......++.+.++|.++||.+... ++--..||+|
T Consensus 456 ------------~~~lflpQ~PY~p~-GtLre~l~YP~---~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 456 ------------SALLFLPQRPYLPQ-GTLREALCYPN---AAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred ------------CceEEecCCCCCCC-ccHHHHHhCCC---CCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 25779999987644 68888885431 111234567788899999986432 0222349999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
||||+++||.|+++|++++||| +||+.++..+++++++-+ .+.|||-|.|... ...+.++.+-+
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l----p~~tvISV~Hr~t---l~~~h~~~l~l 586 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL----PDATVISVGHRPT---LWNFHSRQLEL 586 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC----CCCEEEEeccchh---hHHHHhhheee
Confidence 9999999999999999999999 999999999999999843 6899999999433 34444444333
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-26 Score=228.98 Aligned_cols=190 Identities=16% Similarity=0.107 Sum_probs=153.8
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+.+.+.+.|++|.|.++. . ++++++|-|..++.+++|||||||||||||++.|.+. ..|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~~~-~----iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------- 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP-M----IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------- 453 (614)
T ss_pred CCCeEEEeccccCCCCcc-h----hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-------
Confidence 467899999999998664 2 5999999999999999999999999999999999998 79998754431
Q ss_pred eeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+++.-|+. .+.-..+..+++.. .+ ......+.++.++.++||.....+.+..+||+|||
T Consensus 454 --------------~~~~y~Qh~~e~ldl~~s~le~~~~---~~-~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr 515 (614)
T KOG0927|consen 454 --------------KLPRYNQHLAEQLDLDKSSLEFMMP---KF-PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQR 515 (614)
T ss_pred --------------cchhhhhhhHhhcCcchhHHHHHHH---hc-cccchHHHHHHHHHHhCCCccccccchhhcccccc
Confidence 233333321 12223455555532 11 11234466778899999997667789999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.||.+|+.++..|.+||||| +||..+...+.+.|.+. .-+||+||||..+ +..+++++++..+
T Consensus 516 ~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~------~Ggvv~vSHDfrl--I~qVaeEi~~c~~ 581 (614)
T KOG0927|consen 516 RRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF------PGGVVLVSHDFRL--ISQVAEEIWVCEN 581 (614)
T ss_pred hhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc------CCceeeeechhhH--HHHHHHHhHhhcc
Confidence 99999999999999999999 99999999999999986 3589999999988 9999999999887
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-26 Score=220.24 Aligned_cols=176 Identities=13% Similarity=0.050 Sum_probs=127.7
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEee-cCCCcccceeehhhhhhhHhhhccceeeEeC---------C
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQT-SSGNSSHTITMYMEEHNVMRSLQSGFCVYDS---------R 165 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~-~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~---------~ 165 (382)
..+++||||||||||||+++|++++. . .|++.+.|. ++.... .....+...++++||++ .
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~--------~~~~~~~~~v~~~fq~~~~~~~~~~~~ 96 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKR--------GQAGITKASVTIVFDNSDKSQSPIGFE 96 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcC--------CCCCCcEEEEEEEEEcCCcccCccccc
Confidence 44899999999999999999999997 4 568887765 321100 00012223799999985 3
Q ss_pred CCChhhhhhhHHHHHhh-hh-cC-ccccccccccCcccccc--------------------ccccccccCCCccceeeec
Q 016817 166 GFNYNRVHEGLEELSSW-MS-EG-VHHNQRCLRSDDCALMK--------------------NDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~-~~-~~-~~~~~~~~~~l~~~~L~--------------------~~~~~~~~~~LSGGqkQRv 222 (382)
+.+.++|.+++...... +. .+ ....+++.++++.+++. +. .++++.+||||||||+
T Consensus 97 ~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~-~~~~~~~lS~G~~qr~ 175 (251)
T cd03273 97 NYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV-WKESLTELSGGQRSLV 175 (251)
T ss_pred CCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh-hcccccccCHHHHHHH
Confidence 45678888887543211 10 11 11224566778888885 22 2378999999999999
Q ss_pred ceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||+ .+|+++|+|| +||+..+..+.+.|+++. .|.|+|+|||+. ++...||+++-+.
T Consensus 176 ~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~~---~~~~~~d~v~~~~ 242 (251)
T cd03273 176 ALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLKE---GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECCH---HHHHhCCEEEEEE
Confidence 9999998 4789999999 999999999999999972 478999999963 3555688876553
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-25 Score=224.82 Aligned_cols=189 Identities=13% Similarity=0.114 Sum_probs=154.5
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe---
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD--- 163 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~--- 163 (382)
++|+||++.+||++||.|-=|||+|-|+++|.|..+ .+|+|.++|+++.-.+ +. ...+. .|+||+.|
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s------p~--~Ai~~-Gi~~v~EDRk~ 345 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS------PR--DAIKA-GIAYVPEDRKS 345 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC------HH--HHHHc-CCEeCCccccc
Confidence 889999999999999999999999999999999887 8999999999764222 11 11333 89999987
Q ss_pred CCCCChhhhhhhHHHHHh-hhhcC-c----cccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHH
Q 016817 164 SRGFNYNRVHEGLEELSS-WMSEG-V----HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~-~~~~~-~----~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
.-++..+++.+|+..... .+... . ...+.+.++.+.+++...-.+..+.+||||-||+|.|||.|+.+|++|||
T Consensus 346 ~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 346 EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEE
Confidence 457888999999976521 11111 1 11234556677777764333478899999999999999999999999999
Q ss_pred Hh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 238 LK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 238 DE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|| |+|...+.+|.++|+++ .++|++|||||- ++.|+..+||||++|++
T Consensus 426 DEPTRGIDVGAK~eIy~li~~l---A~~G~ail~iSS--ElpEll~~~DRIlVm~~ 476 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIREL---AAEGKAILMISS--ELPELLGLSDRILVMRE 476 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHH---HHCCCEEEEEeC--ChHHHHhhCCEEEEEEC
Confidence 99 99999999999999999 457999999999 66679999999999987
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-25 Score=204.18 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=112.6
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHH----Hhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC-
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMY----SVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR- 165 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~----Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~- 165 (382)
++++.+| +++|+||||||||||+++|. |... .+|.+..+...+... ..+ ..++++||++.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~------------~~~-~~v~~~f~~~~~ 82 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG------------EVR-AQVKLAFENANG 82 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC------------CCc-EEEEEEEEeCCC
Confidence 3455567 99999999999999999996 5555 456554111111100 011 37899999872
Q ss_pred ----CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee------cceeeeehhHHHHH
Q 016817 166 ----GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR------VDFAMVVSNIAEIY 235 (382)
Q Consensus 166 ----l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR------vaIAraL~~~P~iL 235 (382)
....+++.+|+.+. ..+.+ ...+ ++.+.+||+||+|| ++||||++.+|+++
T Consensus 83 ~~~~v~r~~~~~~~~~~~---------~~~~~---------~~~~-~~~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 83 KKYTITRSLAILENVIFC---------HQGES---------NWPL-LDMRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred CEEEEEEEhhHhhceeee---------chHHH---------HHHH-hcCccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 23334555555221 01111 1122 47899999999996 78999999999999
Q ss_pred HHHh---cCCCCcch-hhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 236 KALK---AGDSKPLD-ATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 236 LLDE---~LD~~~~~-~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|| +||+..+. .+.+.|+++. ++.|.|||+|||++++ +. .+|+++.++.
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~--~~~~~~iiiitH~~~~--~~-~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERK--SQKNFQLIVITHDEEL--VD-AADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHH--hccCCEEEEEEecHHH--Hh-hCCEEEEEee
Confidence 9999 99999999 9999999882 3337899999997665 54 5777777754
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-23 Score=229.81 Aligned_cols=186 Identities=15% Similarity=0.079 Sum_probs=153.3
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
+|+||+=-++||..+||+|+|||||||||++|+|-.. .+|+|.++|.+..+ ..+++ .+|||-|+
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q------------~tF~R-~~GYvqQ~ 872 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ------------ETFAR-VSGYVEQQ 872 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch------------hhhcc-ccceeecc
Confidence 6999999999999999999999999999999999865 39999999985431 11443 89999998
Q ss_pred CCCCChhhhhhhHHHHHhhhh-cCcc---ccccccccCccccccccccccccCC----CccceeeecceeeeehhHH-HH
Q 016817 164 SRGFNYNRVHEGLEELSSWMS-EGVH---HNQRCLRSDDCALMKNDAEIDDLKS----SPKYVLRRVDFAMVVSNIA-EI 234 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~-~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~----LSGGqkQRvaIAraL~~~P-~i 234 (382)
..=.+..||+|-+.+.+.... .... ..+.++++++.++|++.. |..++. ||.+||+|+.||--|+.+| .|
T Consensus 873 DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 873 DIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 665688999999988764321 1112 225578889999998543 355544 9999999999999999999 89
Q ss_pred HHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 235 YKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 235 LLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+||| |||..+...|++.++++ .+.|.||+.+-|.+..+ +.+.-|++++|+.
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkl---a~tGqtIlCTIHQPS~~-ife~FD~LLLLkr 1006 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKL---ADTGQTILCTIHQPSID-IFEAFDELLLLKR 1006 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHH---HhcCCeEEEEecCCcHH-HHHHHhHHHHHhc
Confidence 99999 99999999999999999 45899999999988774 5667788888875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-24 Score=211.65 Aligned_cols=166 Identities=17% Similarity=0.111 Sum_probs=132.9
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
=+|..||+++++||||-||||++++|+|.++ ++|. ..+ -+++|=||--.--...|
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~--------------------~~vSyKPQyI~~~~~gt 417 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED--------------------LKVSYKPQYISPDYDGT 417 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc--------------------ceEeecceeecCCCCCc
Confidence 3456789999999999999999999999999 8888 221 26777777543334578
Q ss_pred hhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchh
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDA 248 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~ 248 (382)
|.+.+...... .........++++-++|++.++ ++..+|||||.||||||.||.++++++|||| .||.+.+..
T Consensus 418 V~~~l~~~~~~---~~~~s~~~~ei~~pl~l~~i~e-~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 418 VEDLLRSAIRS---AFGSSYFKTEIVKPLNLEDLLE-RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred HHHHHHHhhhh---hcccchhHHhhcCccchHHHHh-cccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 88877433211 1112222345778888987665 9999999999999999999999999999999 899999999
Q ss_pred hhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 249 TKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 249 i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+-+.|+++. .+.++|.++|.||+-+ +..++|++++..+
T Consensus 494 vakvIRR~~--e~~~kta~vVdHDi~~--~dyvsDr~ivF~G 531 (591)
T COG1245 494 VAKVIRRFI--ENNEKTALVVDHDIYM--IDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHH--hhcCceEEEEecceeh--hhhhhceEEEEec
Confidence 999999985 5678999999998888 7788999999876
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-23 Score=213.47 Aligned_cols=236 Identities=16% Similarity=0.075 Sum_probs=174.7
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhh-----------------------------hhcCcCchhHHHHHh
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-----------------------------ALIAPDGLNELRHKF 73 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~i~i~nvs 73 (382)
..+..-|..++.+.-++...+.-+.|+.++.+.-.. +..+.+..|++++|+
T Consensus 361 i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~ 440 (659)
T KOG0060|consen 361 IYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVS 440 (659)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeee
Confidence 345566778888888888888888999887765321 111234589999999
Q ss_pred hhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhH
Q 016817 74 LSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVM 152 (382)
Q Consensus 74 ~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~ 152 (382)
..-+.++ ++ +++|+||+|+.|+.+.|.||||||||+|+|+++|+++ .+|++..-.+.-.
T Consensus 441 l~tPt~g-~~---lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---------------- 500 (659)
T KOG0060|consen 441 LSTPTNG-DL---LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---------------- 500 (659)
T ss_pred ecCCCCC-ce---eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----------------
Confidence 9988743 33 5889999999999999999999999999999999999 8999976443100
Q ss_pred hhhccceeeEeCCCCChhhhhhhHHHHHhhh--hcCccccccccccCcccccccccc----------ccccCCCccceee
Q 016817 153 RSLQSGFCVYDSRGFNYNRVHEGLEELSSWM--SEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLR 220 (382)
Q Consensus 153 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQ 220 (382)
+.+-|+||.|+. +..|.++.+-+..... ..+..+++.+.+.|+.++|.+.+. -.....||+||||
T Consensus 501 --~~lfflPQrPYm-t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQ 577 (659)
T KOG0060|consen 501 --KDLFFLPQRPYM-TLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQ 577 (659)
T ss_pred --CceEEecCCCCc-cccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHH
Confidence 257799999864 3358888775542111 123344566777777777654221 0122359999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+++||-+.++|++-+||| |+|...+..+.+.+++. |+|.|-|+| +-+ ..++-+.+.-|++
T Consensus 578 RLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgH--RkS-L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 578 RLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGH--RKS-LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEecc--HHH-HHhhhhEEEEecC
Confidence 9999999999999999999 99999999999888874 899999999 553 3344555555544
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-23 Score=228.45 Aligned_cols=90 Identities=9% Similarity=-0.058 Sum_probs=78.1
Q ss_pred ccccCccccccccccccccCCCccceeeecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCe
Q 016817 193 CLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPI 266 (382)
Q Consensus 193 ~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ti 266 (382)
..+.++.+||.....++.+.+|||||+||++||++|+.+| +++|||| +||+..+..+++.|+++ .+.|.||
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l---~~~G~TV 886 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL---VDKGNTV 886 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEE
Confidence 3457888899753334889999999999999999999999 9999999 99999999999999998 4468999
Q ss_pred EEEecCCCCChhhhhhhhhhhh
Q 016817 267 LILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 267 IiiTHd~~l~~~~~~~d~v~ll 288 (382)
|+||||++. +. .+|+++.|
T Consensus 887 IiitH~~~~--i~-~aD~ii~L 905 (943)
T PRK00349 887 VVIEHNLDV--IK-TADWIIDL 905 (943)
T ss_pred EEEecCHHH--HH-hCCEEEEe
Confidence 999997665 64 68888888
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-23 Score=237.08 Aligned_cols=196 Identities=15% Similarity=0.149 Sum_probs=130.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHH---------HHHHhhcc----c-ce----eeeEeecCCCcccc-eeehhh
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVN---------LMYSVLSR----S-GL----VLFAQTSSGNSSHT-ITMYME 147 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~---------~i~Gl~~~----~-G~----I~i~G~~i~~~~~~-~~~~~~ 147 (382)
.|+++||+|++||+++|+|+||||||||++ .|.|.... + +. |.+|..++...+.. ...+..
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g 689 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIK 689 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehh
Confidence 499999999999999999999999999999 33332211 1 11 34444444321110 011000
Q ss_pred hhhhHh----------h---hccceeeEe------------------C--------------------CCCChhhhhhhH
Q 016817 148 EHNVMR----------S---LQSGFCVYD------------------S--------------------RGFNYNRVHEGL 176 (382)
Q Consensus 148 ~~~~~r----------~---~~ig~v~Q~------------------~--------------------~l~~~~tv~eni 176 (382)
-...+| . ....|.|+. + ..+...||.|++
T Consensus 690 ~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL 769 (1809)
T PRK00635 690 AFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADIL 769 (1809)
T ss_pred hhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHH
Confidence 000111 0 011233442 0 134456777877
Q ss_pred HHHHhhhh-cC---ccccccccccCccccccccccccccCCCccceeeecceeeeeh---hHHHHHHHHh---cCCCCcc
Q 016817 177 EELSSWMS-EG---VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS---NIAEIYKALK---AGDSKPL 246 (382)
Q Consensus 177 ~~~~~~~~-~~---~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~---~~P~iLLLDE---~LD~~~~ 246 (382)
.+...... .. ....+++ ++++.+||.+...++.+.+|||||+|||+|||||+ .+|++||||| +||+..+
T Consensus 770 ~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~ 848 (1809)
T PRK00635 770 EMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDI 848 (1809)
T ss_pred HcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHH
Confidence 65432111 01 1112233 47788899754234899999999999999999997 6999999999 9999999
Q ss_pred hhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 247 DATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 247 ~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
..+++.|+++ .+.|.|||+||||++. + .++|++++|.
T Consensus 849 ~~Ll~lL~~L---~~~G~TVIiIsHdl~~--i-~~aDrVi~L~ 885 (1809)
T PRK00635 849 KALIYVLQSL---THQGHTVVIIEHNMHV--V-KVADYVLELG 885 (1809)
T ss_pred HHHHHHHHHH---HhcCCEEEEEeCCHHH--H-HhCCEEEEEc
Confidence 9999999998 4469999999997665 7 6899999994
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-23 Score=188.34 Aligned_cols=168 Identities=13% Similarity=0.039 Sum_probs=114.4
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceee--eEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVL--FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~--i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
++++++++.+| +.+|+||||||||||+.+|..... |+.. ..|..+.+. . +. .... ..+.+.|++..
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~--~~~~~~~r~~~~~~~---i----~~-~~~~-~~i~~~~~~~~ 79 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG--GKASDTNRGSSLKDL---I----KD-GESS-AKITVTLKNQG 79 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc--CCcccccccccHHHH---h----hC-CCCe-EEEEEEEEcCC
Confidence 56677888887 789999999999999999975443 2221 112211000 0 00 0001 25788888766
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee----hhHHHHHHHHh--
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV----SNIAEIYKALK-- 239 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL----~~~P~iLLLDE-- 239 (382)
++++ . . .....+.+.++++. .+.. ++++.+||+|||||++||+|| +.+|+++||||
T Consensus 80 ~~~~-~----~---------~~~~~~~~~~~l~~---~~~~-~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 80 LDAN-P----L---------CVLSQDMARSFLTS---NKAA-VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred ccCC-c----C---------CHHHHHHHHHHhcc---cccc-CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 5541 0 0 00012334455555 3333 489999999999999999999 58999999999
Q ss_pred -cCCCCcchhhhhhccCcccccc--CCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKC--NENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~--~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||+.++..+.+.|.++. ++ .+.|||++||+++. +..+ |+|.++..
T Consensus 142 ~glD~~~~~~~~~~l~~~~--~~~~~~~~iii~th~~~~--i~~~-d~v~~~~~ 190 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEA--KKQPGRQFIFITPQDISG--LASS-DDVKVFRM 190 (198)
T ss_pred cccCHHHHHHHHHHHHHHH--hcCCCcEEEEEECCcccc--cccc-cceeEEEe
Confidence 999999999999999873 32 24689999996666 7766 77777754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-23 Score=199.50 Aligned_cols=182 Identities=12% Similarity=-0.001 Sum_probs=108.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec-CCCcccceeehhhhhhhHhhhccceeeEeC--C-CCC
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-SGNSSHTITMYMEEHNVMRSLQSGFCVYDS--R-GFN 168 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~-i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~-l~~ 168 (382)
...++ +++|+||||||||||+.+|+++.. +.|++...+.+ +.......... .. ...+.++|+.. . .+.
T Consensus 19 ~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~---~~---~~~v~~~f~~~~~~~~~~ 91 (247)
T cd03275 19 GPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPD---SN---SAYVTAVYEDDDGEEKTF 91 (247)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCC---Cc---eEEEEEEEEcCCCcEEEE
Confidence 33344 999999999999999999999987 67777654321 10000000000 00 01233333321 1 000
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCcccccccc--------------c-------cccccCCCccceeeecceeee
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND--------------A-------EIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--------------~-------~~~~~~~LSGGqkQRvaIAra 227 (382)
..++.+.... ..........+.+.++++.+|+... . .++++.+||||||||++||||
T Consensus 92 ~~~~~~~~~~--~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~a 169 (247)
T cd03275 92 RRIITGGSSS--YRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALL 169 (247)
T ss_pred EEEEECCceE--EEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHH
Confidence 0111111000 0000000111223344444444211 1 123458899999999999999
Q ss_pred ehhH----HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 228 VSNI----AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 228 L~~~----P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++.+ |+++|+|| +||+..+..+.+.|+++ .+.|.|+|+||||.++ ...||+++++..
T Consensus 170 l~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~---~~~g~~vi~isH~~~~---~~~~d~i~~~~~ 233 (247)
T cd03275 170 FAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQ---AGPNFQFIVISLKEEF---FSKADALVGVYR 233 (247)
T ss_pred HHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHh---ccCCcEEEEEECCHHH---HhhCCeEEEEEe
Confidence 9976 89999999 99999999999999998 3358999999997544 457888877754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-22 Score=198.64 Aligned_cols=187 Identities=17% Similarity=0.122 Sum_probs=146.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
++.+-+.+|+|.|++.. + .+++++|-|.--..+|||||||.||||||++|.|-+. ..|+..=+-+
T Consensus 584 PPvLGlH~VtFgy~gqk-p----LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr--------- 649 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQK-P----LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR--------- 649 (807)
T ss_pred CCeeecccccccCCCCC-c----hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce---------
Confidence 56889999999997654 2 5899999999999999999999999999999999988 7887753322
Q ss_pred eehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
-+||+.-|+.. |-...|-.|.+ ...+ .-..+.++..|-.+||..+...-.+..|||||+-
T Consensus 650 ------------L~iG~FdQh~~E~L~~Eetp~EyL---qr~F---Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKa 711 (807)
T KOG0066|consen 650 ------------LRIGWFDQHANEALNGEETPVEYL---QRKF---NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKA 711 (807)
T ss_pred ------------eeeechhhhhHHhhccccCHHHHH---HHhc---CCChHHHHHHhhhhhhhhccceEeeeecCCcchH
Confidence 36888777642 22223333332 2111 1233556778888999877665678899999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||++|-.-+..|+|||||| +||.++...+-+.|.++ +-.|||||||-++ +.+.+..++++.+
T Consensus 712 RValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney------~GgVi~VsHDeRL--i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 712 RVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY------NGGVIMVSHDERL--IVETDCNLWVVEN 776 (807)
T ss_pred HHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc------cCcEEEEecccce--eeecCceEEEEcc
Confidence 9999998899999999999 99999999999999986 4589999999888 7666556666655
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-22 Score=181.01 Aligned_cols=205 Identities=15% Similarity=0.073 Sum_probs=150.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.+..|++.++.|+|.... + ++-|+|++++.|....+||.||||||||+|+|+|-.- -.|.|.+.|++.......
T Consensus 10 ~~~aievsgl~f~y~~~d-P----~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSD-P----IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSL 84 (291)
T ss_pred ccceEEEeccEEecccCC-c----eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccc
Confidence 356899999999997655 2 5899999999999999999999999999999999765 569999999865431111
Q ss_pred e-----eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 142 I-----TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 142 ~-----~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
. .+.-. ++++ ..++- -+..+-..+++...|. +-+-.+.++.+++++.+.+. +. .+.+.+|-
T Consensus 85 ~~Sgdl~YLGg---eW~~-~~~~a-gevplq~D~sae~mif------gV~g~dp~Rre~LI~iLDId--l~-WRmHkvSD 150 (291)
T KOG2355|consen 85 ESSGDLSYLGG---EWSK-TVGIA-GEVPLQGDISAEHMIF------GVGGDDPERREKLIDILDID--LR-WRMHKVSD 150 (291)
T ss_pred cccCceeEecc---cccc-ccccc-ccccccccccHHHHHh------hccCCChhHhhhhhhheecc--ce-EEEeeccc
Confidence 0 00000 1111 22221 1222333455444332 11112225566677777775 33 66799999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+||.|++.|++.=++||||| .||...+..+++.+++-+ .++|.||++.|| -++-.+....+++.+++
T Consensus 151 GqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEc--e~RgatIVYATH--IFDGLe~Wpthl~yi~~ 223 (291)
T KOG2355|consen 151 GQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEEC--EQRGATIVYATH--IFDGLETWPTHLVYIKS 223 (291)
T ss_pred cchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHH--hhcCcEEEEEee--eccchhhcchhEEEecC
Confidence 99999999999999999999999 999999999999999875 568999999999 66667778888887765
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-22 Score=203.19 Aligned_cols=212 Identities=11% Similarity=0.054 Sum_probs=133.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--c-cceeeeEeecCCCccc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--R-SGLVLFAQTSSGNSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~-~G~I~i~G~~i~~~~~ 140 (382)
...+.++|++++|.+.. .++|++|++.+|+.+||+|||||||||+|++|+|-.. + +=.+++-.+.+.....
T Consensus 73 s~dvk~~sls~s~~g~~------l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGVE------LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cccceeeeeeeccCCce------eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 45789999999996543 5999999999999999999999999999999998765 2 2223333332211000
Q ss_pred ce-eehhhhhhhHhhhccceeeEeCCCC-ChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCCCcc
Q 016817 141 TI-TMYMEEHNVMRSLQSGFCVYDSRGF-NYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 141 ~~-~~~~~~~~~~r~~~ig~v~Q~~~l~-~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
.. ..........|. ++.+...+...+ +. .-.+-+........ .....+.++.++|--+|....+.++....|||
T Consensus 147 ~av~~v~~~~~~e~~-rle~~~E~l~~~~d~-~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 147 QAVQAVVMETDHERK-RLEYLAEDLAQACDD-KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHhhhhHHHHH-HHHHHHHHHHhhccc-hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 00 000000000111 111111111100 00 00000100000000 11111223334455555544455589999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|.|++|||||..+|.+||||| +||+.+..-+-+.|.+. ...++++++|+.+. +-.+|..|+-+++
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-----d~~~lVi~sh~QDf--ln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-----DRIILVIVSHSQDF--LNGVCTNIIHLDN 294 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-----cCceEEEEecchhh--hhhHhhhhheecc
Confidence 99999999999999999999999 99999999999999986 22289999996666 8899999998876
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-22 Score=199.04 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=166.2
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC-CCcc
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS-GNSS 139 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i-~~~~ 139 (382)
+.+..+++++++..-..+. ..+++|||+|.+||++||.|-.|-|-+.|+.+|+|+.+ .+|+|.++|+++ ...+
T Consensus 253 pg~~vL~V~~L~v~~~~~~-----~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRGV-----TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCCeEEEEeeeEeecCCCC-----ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC
Confidence 3456889999988765432 15999999999999999999999999999999999997 789999999986 2111
Q ss_pred cceeehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh---hh-cCcc----ccccccccCccccccccccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW---MS-EGVH----HNQRCLRSDDCALMKNDAEI 208 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~---~~-~~~~----~~~~~~~~l~~~~L~~~~~~ 208 (382)
..+.|...++|||.|- .+.+.+++.||+...... +. .+.- ..+...+.++.+++...-..
T Consensus 328 ---------~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~ 398 (501)
T COG3845 328 ---------PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD 398 (501)
T ss_pred ---------HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC
Confidence 1223445899999984 467789999999654321 01 1111 12334556777777532223
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
.+..+||||.+||+-+||-|..+|++||+.+ |||......|.+.|.+. ++.|+.|++||- +++++...||+|
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~---r~~G~AVLLiS~--dLDEil~lsDrI 473 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL---RDAGKAVLLISE--DLDEILELSDRI 473 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH---HhcCCEEEEEeh--hHHHHHHhhhee
Confidence 6678899999999999999999999999999 99999999999999998 668999999999 566699999999
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
.+|.+
T Consensus 474 aVi~~ 478 (501)
T COG3845 474 AVIYE 478 (501)
T ss_pred eeeeC
Confidence 99987
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-22 Score=199.29 Aligned_cols=189 Identities=14% Similarity=0.031 Sum_probs=132.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~ 144 (382)
..|.+.+++..|+++. +|.+-++++..|..+||+|+||+|||||||+|+. |.|.....+
T Consensus 79 ~Di~~~~fdLa~G~k~------LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~ve---------- 137 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKI------LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVE---------- 137 (582)
T ss_pred cceeeeeeeeeecchh------hhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCch----------
Confidence 3677888999997543 6999999999999999999999999999999996 555443321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
++ .|...+-. .|+ .+.....+.+-+..-. .+..+....+...++|.-+|..+.+..++..+||||=|-|++|
T Consensus 138 --qE---~~g~~t~~-~~~-~l~~D~~~~dfl~~e~-~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaL 209 (582)
T KOG0062|consen 138 --QE---VRGDDTEA-LQS-VLESDTERLDFLAEEK-ELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLAL 209 (582)
T ss_pred --hh---eeccchHH-Hhh-hhhccHHHHHHHHhhh-hhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHH
Confidence 00 00000000 011 1112222222221100 0000101112223377788888776668889999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||..+|+|||||| .||..+..-+.+.|... +.|+|+||||-.+ ....|.-|+-+++
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~F--Ln~V~tdIIH~~~ 270 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNF--LNTVCTDIIHLEN 270 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHH--HHHHHHHHHHHhh
Confidence 999999999999999 89999999999999986 4899999998777 8888888887776
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-22 Score=216.37 Aligned_cols=91 Identities=8% Similarity=-0.075 Sum_probs=77.4
Q ss_pred ccccCccccccccccccccCCCccceeeecceeeeehh---HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCe
Q 016817 193 CLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN---IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPI 266 (382)
Q Consensus 193 ~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~---~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ti 266 (382)
..++++.+||.....++.+.+|||||+||++||++|+. +|+++|||| +||+..+..+++.|+++ .+.|.||
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l---~~~G~TV 884 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL---VDQGNTV 884 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEE
Confidence 34567788887532348899999999999999999997 499999999 99999999999999998 4468999
Q ss_pred EEEecCCCCChhhhhhhhhhhhh
Q 016817 267 LILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 267 IiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|+||||++. +. .+|+++.|.
T Consensus 885 Ivi~H~~~~--i~-~aD~ii~Lg 904 (924)
T TIGR00630 885 VVIEHNLDV--IK-TADYIIDLG 904 (924)
T ss_pred EEEeCCHHH--HH-hCCEEEEec
Confidence 999997765 64 688888883
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-21 Score=196.31 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=154.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..+.+++.+|+|.|..+... .+.+++++++.-+.++++|+||+||||+++++.|-.. ++|.+.+.++
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~----~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r-------- 426 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQ----WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR-------- 426 (582)
T ss_pred CCCeeEEEeeeccCCCcchh----hhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc--------
Confidence 35789999999999876532 5999999999999999999999999999999999777 7888876654
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+|+|.+|...=+-.+.+.. +.+.. ....+. .++.+++.+..+||...+..+.+.+||||||=|
T Consensus 427 -------------~ri~~f~Qhhvd~l~~~v~~-vd~~~-~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsr 490 (582)
T KOG0062|consen 427 -------------LRIKYFAQHHVDFLDKNVNA-VDFME-KSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSR 490 (582)
T ss_pred -------------ceecchhHhhhhHHHHHhHH-HHHHH-HhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhH
Confidence 47899888643222233221 11111 111232 456778889999998766657778999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|....++|.+|+||| .||..+...+-+.|++. +-.|||||||.++ +...|+.+++.++
T Consensus 491 vafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F------~GGVv~VSHd~~f--i~~~c~E~Wvve~ 554 (582)
T KOG0062|consen 491 VAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF------NGGVVLVSHDEEF--ISSLCKELWVVED 554 (582)
T ss_pred HHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc------CCcEEEEECcHHH--HhhcCceeEEEcC
Confidence 999999999999999999 89999999999999986 4589999998777 9999999998876
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-21 Score=190.29 Aligned_cols=187 Identities=15% Similarity=0.045 Sum_probs=130.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|.++|+-.--+.++ + ++..++|+|++|-.+.|+||||||||+|+|+|.|++| ..|...+--.
T Consensus 482 I~lenIpvItP~~~--v---vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~------------ 544 (728)
T KOG0064|consen 482 IILENIPVITPAGD--V---LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP------------ 544 (728)
T ss_pred eEEecCceeccCcc--e---eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC------------
Confidence 55556555544444 2 5889999999999999999999999999999999999 7887654211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHh--hhhcCccccccccccCcccccccccccc---------ccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS--WMSEGVHHNQRCLRSDDCALMKNDAEID---------DLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~~L 214 (382)
.++-|+||.|+.- ..|.+|.|-+.-. .+....-.++.....|+.+.|+..+. + .-..|
T Consensus 545 ---------~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da~~dWkd~L 613 (728)
T KOG0064|consen 545 ---------NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDAVRDWKDVL 613 (728)
T ss_pred ---------cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhhhccHHhhc
Confidence 2678889987644 4566665533210 01111112234455666666653221 2 12359
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||+++||.+.++|+.-+||| +.-+..+..+.+..++ .|.+.|-|||.+.+ . .+-..+.-.++
T Consensus 614 sgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~------~gi~llsithrpsl--w-k~h~~ll~~dg 683 (728)
T KOG0064|consen 614 SGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD------AGISLLSITHRPSL--W-KYHTHLLEFDG 683 (728)
T ss_pred cchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh------cCceEEEeecCccH--H-HHHHHHHhccC
Confidence 9999999999999999999999999 6666667788888877 48999999995444 3 34555544443
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-20 Score=184.88 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=128.7
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---------ccceeeeEeecCCCc
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---------RSGLVLFAQTSSGNS 138 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---------~~G~I~i~G~~i~~~ 138 (382)
++..+..+|+.....++-.+|+|+||+|++|++++|+|+||||||||+++|.|... ++|.|.+--..
T Consensus 379 e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---- 454 (593)
T COG2401 379 EFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---- 454 (593)
T ss_pred HHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----
Confidence 55666666655433322236999999999999999999999999999999999853 35555542110
Q ss_pred ccceeehhhhhhhHhhhccceeeEe--CCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccc-ccccccCCCc
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYD--SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-AEIDDLKSSP 215 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~LS 215 (382)
--++++-. +. |..-|+.+.+. ....+-..+.+++.++|+.+. +-.+.+++||
T Consensus 455 -----------------~~a~iPge~Ep~-f~~~tilehl~-------s~tGD~~~AveILnraGlsDAvlyRr~f~ELS 509 (593)
T COG2401 455 -----------------VSALIPGEYEPE-FGEVTILEHLR-------SKTGDLNAAVEILNRAGLSDAVLYRRKFSELS 509 (593)
T ss_pred -----------------hhhccCcccccc-cCchhHHHHHh-------hccCchhHHHHHHHhhccchhhhhhccHhhcC
Confidence 11223322 21 22334444431 122222335567888888763 2237789999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
-|||.|+.||++++..|.+++.|| .||+.+...+..-|.+++ ++.|.|+++|||.+++
T Consensus 510 tGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela--Re~giTlivvThrpEv 570 (593)
T COG2401 510 TGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA--REAGITLIVVTHRPEV 570 (593)
T ss_pred cchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH--HHhCCeEEEEecCHHH
Confidence 999999999999999999999999 899999999999999995 6789999999997776
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-21 Score=189.17 Aligned_cols=195 Identities=14% Similarity=0.090 Sum_probs=128.0
Q ss_pred HHhhhcccCCeeeecCCcccCCCC-CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee----
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMD-IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM---- 144 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~-i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~---- 144 (382)
++..+|+.++.. |. .|- ..+|+++||+||||-||||-+|+|+|.+. .=|+- ++.+ ++......
T Consensus 79 e~vHRYg~NgFk-----L~--~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp--~wdeVi~~FrGt 147 (591)
T COG1245 79 EVVHRYGVNGFK-----LY--RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP--SWDEVIKRFRGT 147 (591)
T ss_pred cceeeccCCceE-----Ee--cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC--CHHHHHHHhhhh
Confidence 567889766522 32 333 35899999999999999999999999987 55543 1110 00000000
Q ss_pred hhhhh-hhHhhhcc--ceeeEeCCCCC---hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce
Q 016817 145 YMEEH-NVMRSLQS--GFCVYDSRGFN---YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 145 ~~~~~-~~~r~~~i--g~v~Q~~~l~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
..+.. ..+....+ ..=+|-..+.| ..+|.+.+. .....-...++.++++|.+.++ +.+++|||||
T Consensus 148 ELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk--------~~de~g~~devve~l~L~nvl~-r~v~~LSGGE 218 (591)
T COG1245 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLK--------KVDERGKFDEVVERLGLENVLD-RDVSELSGGE 218 (591)
T ss_pred HHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHH--------hhhhcCcHHHHHHHhcchhhhh-hhhhhcCchH
Confidence 00000 00000011 11112111111 123333221 1112234667888999997765 9999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.||+|||.|++++++++++|| .||...+-..-+++++++ +.+++||+|.||+.. ...++|-|.++-+
T Consensus 219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~---~~~k~ViVVEHDLav--LD~lsD~vhI~YG 288 (591)
T COG1245 219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA---EDGKYVIVVEHDLAV--LDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHh---ccCCeEEEEechHHH--HHHhhheeEEEec
Confidence 999999999999999999999 899999999999999994 348999999997665 6667887777644
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-19 Score=196.22 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=150.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+|+|+|.-+++|+.+.++||.|||||||+++++|-.+ . .|+|.+||.+.++... + +.++|+.|
T Consensus 130 il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~------------~-~~~aY~~e 196 (1391)
T KOG0065|consen 130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP------------K-KTVAYNSE 196 (1391)
T ss_pred eecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc------------C-ceEEeccc
Confidence 6999999999999999999999999999999999886 2 7899999997654332 1 47999999
Q ss_pred eCCCCChhhhhhhHHHHHhhhhcC-----ccccc----cccccCcccccccc----ccccccCCCccceeeecceeeeeh
Q 016817 163 DSRGFNYNRVHEGLEELSSWMSEG-----VHHNQ----RCLRSDDCALMKND----AEIDDLKSSPKYVLRRVDFAMVVS 229 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~~~-----~~~~~----~~~~~l~~~~L~~~----~~~~~~~~LSGGqkQRvaIAraL~ 229 (382)
+..-+|.+||+|-+.+.+.....+ ..+++ ..+.+++.+||+.- ..|......|||||+||++|-+++
T Consensus 197 ~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 197 QDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 988899999999999877543321 11222 23467888898753 334566779999999999999999
Q ss_pred hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 230 NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 230 ~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.+|+++.+|| |||..+.-++.+.|++++ +..+.|++++-|.+..+. ...-|.|.+|.+
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a--~~~~~t~~vsi~Q~s~~~-~~lFD~v~lL~e 337 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLA--HITGATALVSILQPSPEI-YDLFDDVILLSE 337 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHH--hhhcceEEEEeccCChHH-HHhhhheeeeec
Confidence 9999999999 999999999999999995 556889999999776654 444444444443
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-19 Score=162.62 Aligned_cols=141 Identities=11% Similarity=-0.008 Sum_probs=99.9
Q ss_pred cccCCCCCCcee-eeeeecccCCCchhHHHHHH-Hhhc-ccce-eeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 88 IQKGGMDIPPVI-TILLMGFSGSGKSSLVNLMY-SVLS-RSGL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 88 L~~isl~i~~Ge-~~alvGpnGsGKSTLl~~i~-Gl~~-~~G~-I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
+-++||++.+|+ +++|+||||||||||+|+|+ +.+- ..|- +-... ...++|..|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~---------------------~~~~~~~~~~ 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE---------------------GSSLPVFENI 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc---------------------cccCcCccEE
Confidence 557899999994 89999999999999999998 2222 2331 11000 0023333332
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
+..++..+.+. ...+++|+||+|++.|++++ .+|+++++|| +
T Consensus 76 ---------------------------------~~~lg~~~~l~-~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 76 ---------------------------------FADIGDEQSIE-QSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred ---------------------------------EEecCchhhhh-cCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 11222333333 66789999999999999885 7899999999 9
Q ss_pred CCCCcchhhh-hhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATK-RLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|+..+..+. ..++.+ .+.|.|+|++||+.+ +..++++++.+++
T Consensus 121 lD~~~~~~i~~~~l~~l---~~~~~~vi~~tH~~~---l~~~~d~~~~l~~ 165 (200)
T cd03280 121 TDPVEGAALAIAILEEL---LERGALVIATTHYGE---LKAYAYKREGVEN 165 (200)
T ss_pred CCHHHHHHHHHHHHHHH---HhcCCEEEEECCHHH---HHHHHhcCCCeEE
Confidence 9999999886 467776 345899999999633 5567888888865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-19 Score=162.45 Aligned_cols=73 Identities=4% Similarity=-0.106 Sum_probs=58.8
Q ss_pred ccccCCCccceeeecceeeee----hhHHHHHHHHh---cCCCCcchhhhhhccCccccccCC-CCeEEEecCCCCChhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVV----SNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNE-NPILILTHGDMLSTEE 279 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL----~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g-~tiIiiTHd~~l~~~~ 279 (382)
+..|.+||||||||+.+|++| +.+|+++|+|| +||+.++..+++.|.++. ++.| .|+|++|||+.. ..
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~--~~~g~~~viiith~~~~--~~ 196 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETA--CKEGTSQYFLITPKLLP--GL 196 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHh--hcCCCceEEEEchhhcc--CC
Confidence 467899999999998877554 57999999999 999999999999999973 3324 589999997655 55
Q ss_pred hhhhh
Q 016817 280 RLDAR 284 (382)
Q Consensus 280 ~~~d~ 284 (382)
..+++
T Consensus 197 ~~~~~ 201 (213)
T cd03277 197 NYHEK 201 (213)
T ss_pred cccCc
Confidence 55543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-18 Score=159.15 Aligned_cols=131 Identities=19% Similarity=0.110 Sum_probs=90.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+++|++|+. |++++|+||||||||||+|+|+|... +...|.++. .-.+++|...+
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~-------------------a~~~~~q~~~l 70 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVC-------------------ASSFELPPVKI 70 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEe-------------------cCccCcccceE
Confidence 588888876 69999999999999999999998764 122343221 11356776678
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
|+.+|+.+|+......+. ...+++.++++.+++ .+|+++|+|| ++|+
T Consensus 71 ~~~~~~~d~l~~~~s~~~---~e~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 71 FTSIRVSDDLRDGISYFY---AELRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred EEeccchhccccccChHH---HHHHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCH
Confidence 888999999854321110 001223333333321 7999999999 9999
Q ss_pred Ccchhhh-hhccCccccccCCCCeEEEecCCCC
Q 016817 244 KPLDATK-RLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 244 ~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
..+..+. .+++.+ .+.|.|+|++||++++
T Consensus 121 ~~~~~l~~~ll~~l---~~~~~tiiivTH~~~~ 150 (199)
T cd03283 121 RERQAASAAVLKFL---KNKNTIGIISTHDLEL 150 (199)
T ss_pred HHHHHHHHHHHHHH---HHCCCEEEEEcCcHHH
Confidence 9988765 467776 3458999999997665
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-18 Score=165.40 Aligned_cols=205 Identities=13% Similarity=0.001 Sum_probs=144.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh-hc--ccceeeeEeecCCCcc-c-
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS--RSGLVLFAQTSSGNSS-H- 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl-~~--~~G~I~i~G~~i~~~~-~- 140 (382)
.|.++|.+.+-.++. .+.+.||.|-.|..+|+|||||-||||||+.|+.- +. +.=.|++..+.+.... .
T Consensus 264 DIKiEnF~ISA~Gk~------LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQGKL------LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeecccce------eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 577788777765443 48899999999999999999999999999999854 22 4455666555442111 0
Q ss_pred ceee---hhhhhh---hHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC-ccccccccccCccccccccccccccC
Q 016817 141 TITM---YMEEHN---VMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG-VHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 141 ~~~~---~~~~~~---~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~-~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
.... ....+. +.+. ..+-+-+ ...|+.|.+.....-+. .+ ...+.+++++|.-+|+...+.+++..
T Consensus 338 i~tvl~aD~kRl~lLeee~~-L~~q~e~-----Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAK-LMSQIEE-----GDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTT 411 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHc-----CchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcc
Confidence 0000 000000 0111 1111111 33566666654432222 12 23445778889999998877778888
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
.+|||-|-||++||||..+|-+|+||| .||.....-+-+.|..+ .+|.+|||||..+ ....|..|+-++
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgF--LD~VCtdIIHLD 483 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGF--LDSVCTDIIHLD 483 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccch--HHHHHHHHhhhh
Confidence 899999999999999999999999999 89999888888888876 4799999998877 888898888887
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 484 ~ 484 (807)
T KOG0066|consen 484 N 484 (807)
T ss_pred h
Confidence 6
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-18 Score=154.15 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=60.9
Q ss_pred Cccceeeecceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 214 LSGGqkQRvaIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
|||||+||++|||+++ .+|+++++|| +||+..+..+.+.|.++ .+.|.|+|++||+++. +. .+|+++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~---~~~g~tiIiiSH~~~~--~~-~adrvi 168 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM---AKHTSQFIVITLKKEM--FE-NADKLI 168 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEECCHHH--Hh-hCCeEE
Confidence 9999999999999996 5899999999 99999999999999987 3347899999997654 54 677777
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
.+..
T Consensus 169 ~i~~ 172 (178)
T cd03239 169 GVLF 172 (178)
T ss_pred EEEE
Confidence 6643
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-17 Score=160.55 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=61.3
Q ss_pred CCCccceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
..|||||+||++||++++. +|+++++|| +||+..+..+.+.|+++. .+.|+|+||||+.+ . .++|+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~----~~~tii~isH~~~~--~-~~~d~ 241 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS----RSHQVLCITHLPQV--A-AMADN 241 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEechHHH--H-HhcCc
Confidence 3499999999999997654 999999999 999999999999999873 36899999997654 4 57777
Q ss_pred hhhhhh
Q 016817 285 LKICEY 290 (382)
Q Consensus 285 v~ll~~ 290 (382)
++++.+
T Consensus 242 ~~~l~~ 247 (276)
T cd03241 242 HFLVEK 247 (276)
T ss_pred EEEEEE
Confidence 777765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-18 Score=150.39 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=93.4
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccce-eeEeCCCCCh
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF-CVYDSRGFNY 169 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~-v~Q~~~l~~~ 169 (382)
++.+.++.++.|+|||||||||+++.+....- ..|.+..... .+.|+ +++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~---------------------~~~g~~~~~~~~~~-- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG---------------------VKAGCIVAAVSAEL-- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc---------------------ccCCCcceeeEEEE--
Confidence 34445567999999999999999999877665 5554433110 01121 11111000
Q ss_pred hhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehh----HHHHHHHHh---cCC
Q 016817 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN----IAEIYKALK---AGD 242 (382)
Q Consensus 170 ~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD 242 (382)
+ ....+||+||+||++||++|+. +|+++|+|| ++|
T Consensus 72 --------------------------------i------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld 113 (162)
T cd03227 72 --------------------------------I------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLD 113 (162)
T ss_pred --------------------------------e------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCC
Confidence 0 0112399999999999999987 789999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+..+..+.+.+.++. .+ +.++|++||++++ .. .+|+++.|..
T Consensus 114 ~~~~~~l~~~l~~~~--~~-~~~vii~TH~~~~--~~-~~d~~~~l~~ 155 (162)
T cd03227 114 PRDGQALAEAILEHL--VK-GAQVIVITHLPEL--AE-LADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHHHH--hc-CCEEEEEcCCHHH--HH-hhhhEEEEEE
Confidence 999999999999873 33 7899999997766 54 4677776654
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-17 Score=148.74 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=96.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+.+|++|++++|++++|+||||+||||++++++++.- .. ++|+-. |..
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-----------------------------la-~~G~~v--pa~ 65 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-----------------------------MA-QIGCFV--PAE 65 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-----------------------------HH-HcCCCc--chh
Confidence 5999999999999999999999999999999998741 11 344321 233
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
++.+++.+++ +..++..+... +..+.+|+|++|+. .+.+++.+|+++|+|| ++|+
T Consensus 66 ~~~l~~~d~I--------------------~~~~~~~d~~~-~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 66 YATLPIFNRL--------------------LSRLSNDDSME-RNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hcCccChhhe--------------------eEecCCccccc-hhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCH
Confidence 3434444444 22333443344 66788999999764 4556788999999999 8999
Q ss_pred Ccchhh-hhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 244 KPLDAT-KRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 244 ~~~~~i-~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
.....+ ...++.+ .+.|.++|++||+.++ +..++
T Consensus 124 ~~~~~l~~~il~~l---~~~~~~~i~~TH~~~l--~~~~~ 158 (204)
T cd03282 124 ADGFAISLAILECL---IKKESTVFFATHFRDI--AAILG 158 (204)
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEECChHHH--HHHhh
Confidence 765554 3456665 3458999999997766 54433
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-16 Score=180.30 Aligned_cols=91 Identities=10% Similarity=-0.066 Sum_probs=76.4
Q ss_pred cccCccccccccccccccCCCccceeeecceeeeehhH---HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeE
Q 016817 194 LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNI---AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPIL 267 (382)
Q Consensus 194 ~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~---P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiI 267 (382)
.+.|..+||.-.-..++..+|||||.||+-||.-|..+ +.+++||| +|++.....+++.|.+| .+.|.|||
T Consensus 1680 L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L---~~~g~tvi 1756 (1809)
T PRK00635 1680 LQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTL---VSLGHSVI 1756 (1809)
T ss_pred HHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH---HhcCCeEE
Confidence 45677888875434588889999999999999999865 78999999 99999999999999999 56899999
Q ss_pred EEecCCCCChhhhhhhhhhhhhh
Q 016817 268 ILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 268 iiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|.||+++ +.. ||.|+=|..
T Consensus 1757 vieH~~~~--i~~-aD~iidlgp 1776 (1809)
T PRK00635 1757 YIDHDPAL--LKQ-ADYLIEMGP 1776 (1809)
T ss_pred EEeCCHHH--HHh-CCEEEEcCC
Confidence 99997776 664 777776653
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-17 Score=147.66 Aligned_cols=138 Identities=11% Similarity=0.020 Sum_probs=88.7
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
.|+++.+|++++|+||||||||||+++|++..- ..|..... . + ..+++..|....+
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-~-------------------~-~~i~~~dqi~~~~- 79 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-E-------------------S-ASIPLVDRIFTRI- 79 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-c-------------------c-cccCCcCEEEEEe-
Confidence 355666899999999999999999999996542 34432211 0 0 1445543322111
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKP 245 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~ 245 (382)
. ..+... ...+.+|++++| +..+.+++.+|+++|+|| ++|+..
T Consensus 80 --~------------------------------~~d~i~-~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~ 125 (202)
T cd03243 80 --G------------------------------AEDSIS-DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAE 125 (202)
T ss_pred --c------------------------------Cccccc-CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHH
Confidence 1 111122 334556777776 555567788999999999 899998
Q ss_pred chhhhh-hccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 246 LDATKR-LFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 246 ~~~i~~-~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
...+.. +++.+ .+.+.++|++||+.++ +. .++++..++.
T Consensus 126 ~~~l~~~ll~~l---~~~~~~vi~~tH~~~~--~~-~~~~~~~l~~ 165 (202)
T cd03243 126 GLAIAYAVLEHL---LEKGCRTLFATHFHEL--AD-LPEQVPGVKN 165 (202)
T ss_pred HHHHHHHHHHHH---HhcCCeEEEECChHHH--HH-HhhcCCCeEE
Confidence 887755 45555 3458899999997655 55 4455544443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-16 Score=149.23 Aligned_cols=140 Identities=13% Similarity=0.038 Sum_probs=101.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccc-eeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG-FCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~ 165 (382)
+.+|+++++++|++++|.||||+|||||++.|+-. . +.. ++| |||.+..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-------~----------------------~la-~~g~~vpa~~~ 68 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-------V----------------------LMA-QIGCFVPCDSA 68 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-------H----------------------HHH-HhCCCcCcccE
Confidence 58999999999999999999999999999999821 0 111 455 5555432
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee--hhHHHHHHHHh----
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV--SNIAEIYKALK---- 239 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL--~~~P~iLLLDE---- 239 (382)
.++ .+.+++..+++.+. ....+|.|++|++.+|+++ +.+|+++||||
T Consensus 69 ~~~-----------------------~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 69 DIP-----------------------IVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred EEe-----------------------ccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 111 12345566676643 3578999999999999999 89999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|+...... .++.+. ++.|.++|++||+ .++.++|+++..+++
T Consensus 122 T~~lD~~~~~~~--il~~l~--~~~~~~vlisTH~---~el~~~~~~~~~i~~ 167 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIA--TQIKCFCLFATHF---HELTALADEVPNVKN 167 (222)
T ss_pred CChHHHHHHHHH--HHHHHH--hcCCCeEEEEech---HHHHHHhhcCCCeEE
Confidence 4887766432 233331 2257899999994 336778888887766
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-16 Score=151.72 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=125.7
Q ss_pred cccCCCCCCce-----eeeeeecccCCCchhHHHHHHHhhc-cc-ceeeeEeecCCCcccceeehhhhhhhHhhhcccee
Q 016817 88 IQKGGMDIPPV-----ITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160 (382)
Q Consensus 88 L~~isl~i~~G-----e~~alvGpnGsGKSTLl~~i~Gl~~-~~-G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v 160 (382)
+.+..|.|+.| |++..+|.||.|||||+++++|.++ ++ |+|-. -.++|=
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~------------------------lnVSyk 407 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV------------------------LNVSYK 407 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc------------------------cceecc
Confidence 66777777766 5789999999999999999999887 53 44422 145566
Q ss_pred eEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-
Q 016817 161 VYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK- 239 (382)
Q Consensus 161 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE- 239 (382)
+|...-=...||++-+..-.+ ....+.+-+.++++-+.+++.. |+.+.+||||++||||||.+|-..+++++.||
T Consensus 408 pqkispK~~~tvR~ll~~kIr---~ay~~pqF~~dvmkpL~ie~i~-dqevq~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIR---DAYMHPQFVNDVMKPLQIENII-DQEVQGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred ccccCccccchHHHHHHHHhH---hhhcCHHHHHhhhhhhhHHHHH-hHHhhcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 665432223566655432211 1111224455677777777554 48999999999999999999999999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
-||.+.+...-..+++.. -..++|-.+|.||.-+ +...+|++++.++
T Consensus 484 sAylDSeQRi~AskvikRfi--lhakktafvVEhdfIm--aTYladrvivf~G 532 (592)
T KOG0063|consen 484 SAYLDSEQRIIASKVIKRFI--LHAKKTAFVVEHDFIM--ATYLADRVIVFEG 532 (592)
T ss_pred hhhcChHHHHHHHHHHHHHH--HhccchhhhhhhHHHH--HHhhcceeEEEec
Confidence 799999888777777764 2356899999997666 6678899998876
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-15 Score=155.79 Aligned_cols=89 Identities=8% Similarity=-0.062 Sum_probs=73.0
Q ss_pred ccCccccccccccccccCCCccceeeecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEE
Q 016817 195 RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILI 268 (382)
Q Consensus 195 ~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIi 268 (382)
+.|..+||.-.-..++..+|||||.|||-||.-|.... -++|||| ||-..-...+++.|.+| .+.|.|||+
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL---vd~GnTViV 880 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL---VDKGNTVIV 880 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEE
Confidence 34556777632223778889999999999999999887 8999999 99999999999999999 568999999
Q ss_pred EecCCCCChhhhhhhhhhhhh
Q 016817 269 LTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 269 iTHd~~l~~~~~~~d~v~ll~ 289 (382)
|.|++++ +. .||.|+=+-
T Consensus 881 IEHNLdV--Ik-~AD~IIDLG 898 (935)
T COG0178 881 IEHNLDV--IK-TADWIIDLG 898 (935)
T ss_pred Eecccce--Ee-ecCEEEEcC
Confidence 9997766 55 677666553
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-15 Score=141.25 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=93.4
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
..++|+||||||||||+++|+|++. .+|+|.++|+++.... ...++.. .+++++|+. ++...+|.+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d--------~~~ei~~-~~~~~~q~~-~~~r~~v~~~~~ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVD--------ERSEIAG-CVNGVPQHD-VGIRTDVLDGCP 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecch--------hHHHHHH-Hhccccccc-ccccccccccch
Confidence 5789999999999999999999999 8999999999764211 1122332 577888853 344445444321
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCcc
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPG 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~ 257 (382)
. ..|+ ..++|+ ++|+++++|| +.....+..+++.+
T Consensus 182 k------------------------------------~~~~---~~~i~~--~~P~villDE---~~~~e~~~~l~~~~- 216 (270)
T TIGR02858 182 K------------------------------------AEGM---MMLIRS--MSPDVIVVDE---IGREEDVEALLEAL- 216 (270)
T ss_pred H------------------------------------HHHH---HHHHHh--CCCCEEEEeC---CCcHHHHHHHHHHH-
Confidence 0 0011 222333 6999999999 33445566666665
Q ss_pred ccccCCCCeEEEecCCCCChh-----------hhhhhhhhhhhh-ccccccccee
Q 016817 258 LRKCNENPILILTHGDMLSTE-----------ERLDARLKICEY-LGVSEISGVY 300 (382)
Q Consensus 258 ~~~~~g~tiIiiTHd~~l~~~-----------~~~~d~v~ll~~-~~~~~~~~v~ 300 (382)
. .|.|+|++||+..+..+ ..+++++++|++ -..+.+++++
T Consensus 217 --~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~~~g~~~~i~ 268 (270)
T TIGR02858 217 --H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRKGPGTVEAVY 268 (270)
T ss_pred --h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCCCCCceeecc
Confidence 2 58999999997666444 245677777765 3344444443
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-14 Score=117.05 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=59.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|++++|++++|++++|+||||||||||++++. +|++.++|.++...... + .+ +.+++++|+ +
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~------~---~~-~~~~~~~q~--l 66 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIRED------S---KD-ELIGRNPEL--G 66 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhh------h---cC-CEEEEechh--c
Confidence 699999999999999999999999999999987 89999999876432211 1 12 356777777 5
Q ss_pred CChhhhhhhHHH
Q 016817 167 FNYNRVHEGLEE 178 (382)
Q Consensus 167 ~~~~tv~eni~~ 178 (382)
|+ .|+++||..
T Consensus 67 f~-~ti~~Ni~~ 77 (107)
T cd00820 67 LE-IRLRLNIFL 77 (107)
T ss_pred ch-hhHHhhcee
Confidence 55 799999964
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-14 Score=139.13 Aligned_cols=63 Identities=10% Similarity=-0.094 Sum_probs=50.4
Q ss_pred cCCCccceeeecceeeeeh---------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChh
Q 016817 211 LKSSPKYVLRRVDFAMVVS---------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE 278 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~---------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~ 278 (382)
...||+||||+++|||+|+ .+|+++|+|| +||+..+..+.+.|+++ + .+++++|+... +
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q~ii~~~~~~~--~ 251 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-QTFVTTTDLAD--F 251 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-CEEEEeCCchh--c
Confidence 4458999999999999986 6999999999 99999999999999886 2 45666664333 4
Q ss_pred hhhh
Q 016817 279 ERLD 282 (382)
Q Consensus 279 ~~~~ 282 (382)
..+|
T Consensus 252 ~~~~ 255 (270)
T cd03242 252 DALW 255 (270)
T ss_pred cchh
Confidence 4444
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-14 Score=154.98 Aligned_cols=87 Identities=6% Similarity=-0.094 Sum_probs=76.2
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEe
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILT 270 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT 270 (382)
.+..+||.....++.+.+|||||+|||.||++|+.+| ++||||| +||+.....+.+.|+++ ++.|.|||+|+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L---~~~G~TVIvVe 546 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL---RDLGNTVIVVE 546 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHH---HhCCCEEEEEE
Confidence 4678888744235999999999999999999999986 8999999 99999999999999998 44699999999
Q ss_pred cCCCCChhhhhhhhhhhh
Q 016817 271 HGDMLSTEERLDARLKIC 288 (382)
Q Consensus 271 Hd~~l~~~~~~~d~v~ll 288 (382)
||++. +. .||++++|
T Consensus 547 Hd~~~--i~-~aD~vi~L 561 (924)
T TIGR00630 547 HDEET--IR-AADYVIDI 561 (924)
T ss_pred CCHHH--Hh-hCCEEEEe
Confidence 97655 65 79999998
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-13 Score=128.92 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=81.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+.+|++|++++ ++++|+||||||||||+|+|+++.- ..|... -. .+ ..++++.|
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~v-p~-------------------~~-~~i~~~~~-- 75 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFV-PA-------------------SK-AEIGVVDR-- 75 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCee-cc-------------------cc-ceecceee--
Confidence 58999999987 8999999999999999999998653 222210 00 00 25677655
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee--hhHHHHHHHHh---
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV--SNIAEIYKALK--- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL--~~~P~iLLLDE--- 239 (382)
+|+++++.+++.... |.=...++.+++++ +.+|+++||||
T Consensus 76 -i~~~~~~~~~ls~g~----------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~ 120 (216)
T cd03284 76 -IFTRIGASDDLAGGR----------------------------------STFMVEMVETANILNNATERSLVLLDEIGR 120 (216)
T ss_pred -EeccCCchhhhccCc----------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 345566655553210 00001111222222 46899999999
Q ss_pred ---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 ---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|... ....+++.+. +..+.++|++||+.++ ..+++++..+++
T Consensus 121 gt~~lD~~~--~~~~il~~l~--~~~~~~vi~~TH~~~l---~~l~~~~~~v~~ 167 (216)
T cd03284 121 GTSTYDGLS--IAWAIVEYLH--EKIGAKTLFATHYHEL---TELEGKLPRVKN 167 (216)
T ss_pred CCChHHHHH--HHHHHHHHHH--hccCCcEEEEeCcHHH---HHHhhcCCCeEE
Confidence 355433 1233344441 2237899999997544 445666544444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-14 Score=155.14 Aligned_cols=88 Identities=7% Similarity=-0.068 Sum_probs=77.5
Q ss_pred ccCccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEE
Q 016817 195 RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILIL 269 (382)
Q Consensus 195 ~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIii 269 (382)
++++.+||.....++.+.+|||||+|||+||+||+.+| ++||||| +||+..+..+.++|+++ ++.|.|||+|
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L---~~~G~TVIvV 547 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL---RDLGNTLIVV 547 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH---HhCCCEEEEE
Confidence 36888999754235999999999999999999999997 9999999 99999999999999998 4569999999
Q ss_pred ecCCCCChhhhhhhhhhhh
Q 016817 270 THGDMLSTEERLDARLKIC 288 (382)
Q Consensus 270 THd~~l~~~~~~~d~v~ll 288 (382)
+||++. +. .||+|++|
T Consensus 548 eH~~~~--i~-~aD~vi~L 563 (943)
T PRK00349 548 EHDEDT--IR-AADYIVDI 563 (943)
T ss_pred eCCHHH--HH-hCCEEEEe
Confidence 996665 65 58999988
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-13 Score=149.80 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=88.3
Q ss_pred CCCCCCce-eeeeeecccCCCchhHHHHHHHhh-c-ccce-eeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 91 GGMDIPPV-ITILLMGFSGSGKSSLVNLMYSVL-S-RSGL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 91 isl~i~~G-e~~alvGpnGsGKSTLl~~i~Gl~-~-~~G~-I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|+++..+ ++++|+||||+|||||+|+|+|.. - ..|- |-.... ..++|..|.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~---------------------~~~~~~d~i~~- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH---------------------SEIPYFEEIFA- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc---------------------ccccchhheee-
Confidence 68888777 899999999999999999999983 2 3442 111000 02222222110
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
.++..+.+. ...+++|+|++|++.|++++ .+|.++|+|| ++||
T Consensus 372 --------------------------------~i~~~~si~-~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 372 --------------------------------DIGDEQSIE-QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDP 417 (771)
T ss_pred --------------------------------ecChHhHHh-hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCH
Confidence 001111223 55788999999999998876 7899999999 9999
Q ss_pred Ccchhh-hhhccCccccccCCCCeEEEecCCCC
Q 016817 244 KPLDAT-KRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 244 ~~~~~i-~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
.....+ ..++..+ .+.|.++|++||+.++
T Consensus 418 ~eg~ala~aiLe~l---~~~g~~viitTH~~eL 447 (771)
T TIGR01069 418 DEGSALAISILEYL---LKQNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEECChHHH
Confidence 999888 4667766 3468999999997655
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-13 Score=125.53 Aligned_cols=71 Identities=11% Similarity=-0.084 Sum_probs=50.5
Q ss_pred cccccccccccccCCCccceeeecceeeeehh--HHHHHHHHh---cCCCCcchhhh-hhccCccccccCCCCeEEEecC
Q 016817 199 CALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN--IAEIYKALK---AGDSKPLDATK-RLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 199 ~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~--~P~iLLLDE---~LD~~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd 272 (382)
.++..+.+. +..+++|+|++|. ++++.. +|+++|+|| ++|+.....+. .+++.+. ++.+.++|++||+
T Consensus 48 ~~~~~d~~~-~~~s~fs~~~~~l---~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~--~~~~~~iii~TH~ 121 (185)
T smart00534 48 RIGASDSLA-QGLSTFMVEMKET---ANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLL--EKIGALTLFATHY 121 (185)
T ss_pred EeCCCCchh-ccccHHHHHHHHH---HHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCCeEEEEecH
Confidence 344444444 6778999998874 444444 999999999 99999777764 5556652 2247899999996
Q ss_pred CCC
Q 016817 273 DML 275 (382)
Q Consensus 273 ~~l 275 (382)
+++
T Consensus 122 ~~l 124 (185)
T smart00534 122 HEL 124 (185)
T ss_pred HHH
Confidence 644
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-12 Score=121.97 Aligned_cols=130 Identities=14% Similarity=0.038 Sum_probs=81.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHh--hcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl--~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
=+|+++.=..+.+++|+||||+|||||+|.|+.. +...|....... -.++|..|...
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~---------------------~~~~~~d~i~~ 77 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS---------------------ATIGLVDKIFT 77 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC---------------------cEEeeeeeeee
Confidence 4455554222378999999999999999999954 335666543211 14566555432
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
-+. ..+.+.. ++..+ .-+.||+++|++++.+|.++|+|| ++|
T Consensus 78 ~l~---~~~si~~----------------------~~S~f----------~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 78 RMS---SRESVSS----------------------GQSAF----------MIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred eeC---CccChhh----------------------ccchH----------HHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 111 1111100 00111 123589999999999999999999 999
Q ss_pred CCcchhh-hhhccCcccccc--CCCCeEEEecCCCC
Q 016817 243 SKPLDAT-KRLFSAPGLRKC--NENPILILTHGDML 275 (382)
Q Consensus 243 ~~~~~~i-~~~l~~l~~~~~--~g~tiIiiTHd~~l 275 (382)
+.....+ ...++.+. +. .+.++|++||+.++
T Consensus 123 ~~~~~~~~~ail~~l~--~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 123 TEDGAGLLIATIEHLL--KRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHHHHH--hcCCCCcEEEEEcChHHH
Confidence 9764444 56777763 21 23589999997666
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-13 Score=133.26 Aligned_cols=197 Identities=15% Similarity=0.089 Sum_probs=123.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCC-CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDI-PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i-~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.--.++.+.+|.... ++---|-+ .+|++.++||-||-||||-+++++|-.+ .-|.-.- +.+ +.....
T Consensus 74 ~nl~~etthry~~n~-------fKlhrlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~---w~~il~ 142 (592)
T KOG0063|consen 74 TNLEKETTHRYSANS-------FKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPD---WQEILT 142 (592)
T ss_pred hhHhhhhhhhhcccc-------eeeccCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-Ccc---hHHHhh
Confidence 334567778886554 22223333 4799999999999999999999999887 5554321 110 000000
Q ss_pred ehhhhhhhHhh-------------hccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccc
Q 016817 144 MYMEEHNVMRS-------------LQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 144 ~~~~~~~~~r~-------------~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
+. . -.++.. .+..||-|-|... ..+|.+.+. ...++....++++.+.|...+ ++.
T Consensus 143 ~f-r-gselq~yftk~le~~lk~~~kpQyvd~ipr~~-k~~v~~~l~--------~~~~r~~~~~~~~~~~L~~~~-~re 210 (592)
T KOG0063|consen 143 YF-R-GSELQNYFTKILEDNLKAIIKPQYVDQIPRAV-KGTVGSLLD--------RKDERDNKEEVCDQLDLNNLL-DRE 210 (592)
T ss_pred hh-h-hHHHhhhhhhhccccccCcCChHHHHHHHHHH-HHHHHHHHH--------HHhhcccHHHHHHHHHHhhHH-Hhh
Confidence 00 0 000000 0000111100000 011222221 111222344566777777554 489
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
..+||||+-||.+||.+-+++.++.++|| .||...+..--..|+.+. .-+.-||+|.||+.+ .....|-+.+
T Consensus 211 ~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~---~p~~YiIVVEHDLsV--LDylSDFiCc 285 (592)
T KOG0063|consen 211 VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLI---NPDRYIIVVEHDLSV--LDYLSDFICC 285 (592)
T ss_pred hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhh---CCCCeEEEEEeechH--HHhhhcceeE
Confidence 99999999999999999999999999999 899999999999999883 356789999997776 6666676666
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
+-+
T Consensus 286 LYG 288 (592)
T KOG0063|consen 286 LYG 288 (592)
T ss_pred Eec
Confidence 544
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-14 Score=129.89 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=46.5
Q ss_pred cCCCccceeeecceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 211 LKSSPKYVLRRVDFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+..||||||-+++||--|+ .++++++||| +||..++..+.++|+++. .+.-+|++||+..+
T Consensus 134 ~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~----~~~Q~ii~Th~~~~ 201 (220)
T PF02463_consen 134 PEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS----KQSQFIITTHNPEM 201 (220)
T ss_dssp TTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT----TTSEEEEE-S-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccc
Confidence 4589999999999986654 4678999999 999999999999999972 35789999996554
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-12 Score=141.59 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=92.8
Q ss_pred CCCCC-ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccc-eeeEeCCCCCh
Q 016817 92 GMDIP-PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG-FCVYDSRGFNY 169 (382)
Q Consensus 92 sl~i~-~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~l~~~ 169 (382)
|+.+. .+.++.|.|||++||||+||.++...- -. ++| +||-+.. ..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~-----------------------------ma-q~G~~vpa~~~--~~ 367 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL-----------------------------MA-KSGLPIPANEP--SE 367 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHH-----------------------------HH-HhCCCcccCCC--cc
Confidence 44443 456899999999999999999975421 00 223 3343310 01
Q ss_pred hhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcc
Q 016817 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPL 246 (382)
Q Consensus 170 ~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~ 246 (382)
.++.+++ +..+|-.+.+. +.++++|+||+|++.|++++ .+|.++|+|| ++||...
T Consensus 368 i~~~~~i--------------------~~~ig~~~si~-~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg 425 (782)
T PRK00409 368 IPVFKEI--------------------FADIGDEQSIE-QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEG 425 (782)
T ss_pred ccccceE--------------------EEecCCccchh-hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHH
Confidence 1111111 11222233444 67889999999999999988 7899999999 9999988
Q ss_pred hhhhh-hccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 247 DATKR-LFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 247 ~~i~~-~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
..+.. ++..+ .+.|.++|++||+.++ ...+++...+.+
T Consensus 426 ~ala~aile~l---~~~~~~vIitTH~~el--~~~~~~~~~v~~ 464 (782)
T PRK00409 426 AALAISILEYL---RKRGAKIIATTHYKEL--KALMYNREGVEN 464 (782)
T ss_pred HHHHHHHHHHH---HHCCCEEEEECChHHH--HHHHhcCCCeEE
Confidence 88854 55655 3468899999997666 555566555544
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-11 Score=125.73 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=52.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+|++|||++++||+++|+|||||||||||+ +|+.. ++| +|.++|+++...+ ..+...+| +|||++
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~------~~ai~~LR-----~VFQ~f 87 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPN------KNAMETLD-----EIFDGF 87 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCC------HHHHHHHH-----HHHHhh
Confidence 699999999999999999999999999999 67766 666 7999999875432 12333333 788875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-11 Score=113.73 Aligned_cols=174 Identities=16% Similarity=0.076 Sum_probs=92.0
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc--eeeeEeecCCCcccceeehhhhhhhHhhhccc-eeeEeCCCCC
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG-FCVYDSRGFN 168 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G--~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~l~~ 168 (382)
+.+.+|+.++|+||+|+|||||++.|++... ..+ .+++... .+.. .+..++.+.-.. ++.......+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI--~er~-------~ev~el~~~I~~~~v~~~~~~~~ 81 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLI--DERP-------EEVTDMQRSVKGEVIASTFDEPP 81 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEc--cCCC-------ccHHHHHHHhccEEEEecCCCCH
Confidence 5788999999999999999999999999887 433 3232211 1100 011111111111 2222222111
Q ss_pred hhh--hhhhHHHHHhhh-hcCccc----c--ccccccCccccccccccccccCCCccce--------eeecceeeeehhH
Q 016817 169 YNR--VHEGLEELSSWM-SEGVHH----N--QRCLRSDDCALMKNDAEIDDLKSSPKYV--------LRRVDFAMVVSNI 231 (382)
Q Consensus 169 ~~t--v~eni~~~~~~~-~~~~~~----~--~~~~~~l~~~~L~~~~~~~~~~~LSGGq--------kQRvaIAraL~~~ 231 (382)
... +...+...+..+ ..+... + .+..++.+.+.. ..-..+|||+ +||+++||++..+
T Consensus 82 ~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~------~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~ 155 (249)
T cd01128 82 ERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVP------PSGKILSGGVDANALHKPKRFFGAARNIEEG 155 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccc------cCCCCCCCCcChhhhhhhHHHHHHhcCCCCC
Confidence 111 111111111111 111110 0 111112222222 1223369999 9999999999899
Q ss_pred HHHHHHHh--cCCCCcchh-hhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 232 AEIYKALK--AGDSKPLDA-TKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 232 P~iLLLDE--~LD~~~~~~-i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|.+| - .+|+.+... ++ +.++ +..+.|.|++|| ++++.. ..+.|.+++.
T Consensus 156 gsIt~l-~T~~~d~~~~~~~~i--~~~~---~~~~~~~ivls~--~la~~~-~~paI~vl~s 208 (249)
T cd01128 156 GSLTII-ATALVDTGSRMDDVI--FEEF---KGTGNMELVLDR--RLAERR-IFPAIDILKS 208 (249)
T ss_pred CceEEe-eeheecCCCcccchH--HHHH---hcCCCcEEEEch--HHhhCC-CCCeEEEcCC
Confidence 999988 5 787655433 33 3443 224689999999 664344 3455555554
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-11 Score=114.77 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=38.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh-c-ccceeee
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-S-RSGLVLF 130 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~-~-~~G~I~i 130 (382)
+.+|++|.+.+|++++|+||||+||||++++|++.. . ..|....
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999999999999999954 3 6787654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-11 Score=113.85 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=40.2
Q ss_pred CCCccc--eeeecceeeeehhHHHHHHHHh--------cCCCCcchhhhhhccCc
Q 016817 212 KSSPKY--VLRRVDFAMVVSNIAEIYKALK--------AGDSKPLDATKRLFSAP 256 (382)
Q Consensus 212 ~~LSGG--qkQRvaIAraL~~~P~iLLLDE--------~LD~~~~~~i~~~l~~l 256 (382)
+..||+ |++++.|||+++.+|+++++|| +||+..+..+.+.|+++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 445555 8888999999999999999998 59999999999999998
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-11 Score=107.19 Aligned_cols=75 Identities=8% Similarity=-0.063 Sum_probs=57.6
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh--cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
++...|||+++-++.+++....+|+++++|| .++... ..+.+.+.++ .+.|.++|+++|+.. +..+++++.
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~-~~~~~~l~~~---~~~~~~~i~v~h~~~---~~~~~~~i~ 146 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS-PKFVKAVEEV---LDSEKPVIATLHRRS---VHPFVQEIK 146 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh-HHHHHHHHHH---HhCCCeEEEEECchh---hHHHHHHHh
Confidence 4556799999999999998889999999999 454443 4556667666 236899999999632 456788888
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
.+.+
T Consensus 147 ~~~~ 150 (174)
T PRK13695 147 SRPG 150 (174)
T ss_pred ccCC
Confidence 8876
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-10 Score=119.57 Aligned_cols=169 Identities=15% Similarity=0.006 Sum_probs=104.4
Q ss_pred cccC-CCCCCceeeeeeecccCCCchhHHHHH--HHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 88 IQKG-GMDIPPVITILLMGFSGSGKSSLVNLM--YSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 88 L~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i--~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
|+.+ .=-+++|.++.|.||+|||||||..-+ .|+.. .+.-+++....- ..+..... ..+||-+++
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~----------~~~l~~~~-~~~G~~~~~ 78 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES----------PQDIIKNA-RSFGWDLQK 78 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC----------HHHHHHHH-HHcCCCHHH
Confidence 4444 225889999999999999999999876 46655 456666665421 12222122 256776654
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee--ehhHHHHHHHHhcC
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV--VSNIAEIYKALKAG 241 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra--L~~~P~iLLLDE~L 241 (382)
..--..+.+. .. ........+++.+++.+.+. +.+..+|+|++|||.|+++ |...|+.+
T Consensus 79 ~~~~g~l~~~-----------~~-~~~~~~~~~~~~~~l~~~l~-~i~~~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 79 LVDEGKLFIL-----------DA-SPDPEGQDVVGGFDLSALIE-RINYAIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred HhhcCceEEE-----------ec-CchhccccccccCCHHHHHH-HHHHHHHHhCCcEEEEeehhHhhhhcCch------
Confidence 3110000000 00 00111223456677776554 8889999999999999954 43444332
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCCh-------hhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLST-------EERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~-------~~~~~d~v~ll~~ 290 (382)
+..+..+.++++.+ ++.|+|+|++||+.+... ...++|-|+.++.
T Consensus 140 -~~~r~~l~~Li~~L---~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~~ 191 (484)
T TIGR02655 140 -SVVRREIFRLVARL---KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 191 (484)
T ss_pred -HHHHHHHHHHHHHH---HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEEE
Confidence 34567788888887 457999999999765310 2457888888875
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-10 Score=115.27 Aligned_cols=169 Identities=11% Similarity=0.054 Sum_probs=97.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ +.|.|.+.|+.-.+...... .......++ +.+.++.+...
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~-~~l~~~~l~-r~v~vv~~~~~ 224 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIE-RDLGPEGLK-RSIVVVATSDQ 224 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHH-hhcChhhhc-CeEEEEECCCC
Confidence 69999 9999999999999999999999999999999 89999998875432221000 000111233 37888875321
Q ss_pred CC-ChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHH-HHHHh----
Q 016817 166 GF-NYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEI-YKALK---- 239 (382)
Q Consensus 166 l~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~i-LLLDE---- 239 (382)
-. .+..+-..-..++.++.. .. ++++= +-+.+. ++ |+|+ -+| +.+.|
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr~-~g-----~~Vll---~~Dslt-r~--------------A~A~---rEisl~~ge~P~~ 277 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFRD-QG-----LNVML---MMDSVT-RV--------------AMAQ---REIGLAVGEPPTT 277 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-CC-----CcEEE---EEeChH-HH--------------HHHH---HHHHHhcCCCCcc
Confidence 00 000000000001111110 00 00000 001111 11 2221 122 34566
Q ss_pred -cCCCCcchhhhhhccCccccccCCC-----CeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNEN-----PILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~-----tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+||.....+.++++++. ..+.|. ||++.+||++ ..+||++..+.+
T Consensus 278 ~G~dp~~~~~l~~ller~~-~~~~GsIT~~~TVlv~~hdm~----e~i~d~v~~i~d 329 (438)
T PRK07721 278 KGYTPSVFAILPKLLERTG-TNASGSITAFYTVLVDGDDMN----EPIADTVRGILD 329 (438)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCCCCeeeEEEEEEECCCCC----chhhhhEEEecC
Confidence 999999999999999973 113575 9999999665 267888877765
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-10 Score=107.15 Aligned_cols=135 Identities=13% Similarity=0.025 Sum_probs=80.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+-+|++|++++|++++|.||||+||||+++.+++..- ..|--.-... -.++++.+
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~---------------------~~i~~~~~-- 75 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS---------------------MRLSLVDR-- 75 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc---------------------cEeccccE--
Confidence 5899999999999999999999999999999998754 2332111000 02222111
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+|..+...+++......+ + .|-++++-.-..+.+|.++|+|| |.
T Consensus 76 -i~~~~~~~d~~~~~~StF-------------------------------~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 76 -IFTRIGARDDIMKGESTF-------------------------------M-VELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred -EEEecCcccccccCcchH-------------------------------H-HHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 122222222221110000 0 01111111111124689999999 89
Q ss_pred CCCcchhhhhh-ccCccccccCCCCeEEEecCCCCChhhhh
Q 016817 242 DSKPLDATKRL-FSAPGLRKCNENPILILTHGDMLSTEERL 281 (382)
Q Consensus 242 D~~~~~~i~~~-l~~l~~~~~~g~tiIiiTHd~~l~~~~~~ 281 (382)
++.....+... ++.+. +..+.++|++||++++ +..+
T Consensus 123 ~~~dg~~la~ail~~L~--~~~~~~~i~~TH~~el--~~~~ 159 (218)
T cd03286 123 STHDGYAIAHAVLEYLV--KKVKCLTLFSTHYHSL--CDEF 159 (218)
T ss_pred CchHHHHHHHHHHHHHH--HhcCCcEEEEeccHHH--HHHh
Confidence 99998888877 66662 2238999999997777 5544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-10 Score=130.76 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=71.0
Q ss_pred ccccCCCccceeeecceeeeehh----------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSN----------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~----------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
++++.+|||||++||+||+||+. +|++||+|| +||+.+...+++.|.++ ...|++|+||||+++
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l---~~~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI---REGSKMIGIISHVPE 1021 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCcHH
Confidence 37899999999999999999986 799999999 99999999999999998 346899999999777
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
+ ...++++|.+++.
T Consensus 1022 ~--~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 1022 F--RERIPHRILVKKT 1035 (1042)
T ss_pred H--HHhhCCEEEEEEC
Confidence 7 8889999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.2e-10 Score=118.35 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=63.1
Q ss_pred cccCCCccceeeecceeeeeh----------hHHHHHHHHh----cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVS----------NIAEIYKALK----AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~----------~~P~iLLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
..+.+|||||+||++||+||+ .+|++||||| +||+.+...+.+.|.++ .|.|||+|||++.
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-----~~~~iiiish~~~ 538 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-----KDTNVFVISHKDH 538 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-----CCCeEEEEECchh
Confidence 467889999999999999987 4899999999 59999999999999987 4789999999755
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
+ . ..+|+++++..
T Consensus 539 ~--~-~~~d~~~~l~~ 551 (562)
T PHA02562 539 D--P-QKFDRHLKMEK 551 (562)
T ss_pred c--h-hhhhcEEEEEE
Confidence 5 4 35677777754
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-09 Score=108.15 Aligned_cols=93 Identities=11% Similarity=-0.009 Sum_probs=69.3
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+.+.++.+++++.|..+.+ +++.++ .|.+|++++|+||||||||||+++|+++.+ +.|.|.+.|+.-.+..
T Consensus 136 ~p~~~~r~~v~~~l~TGi~-----aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~-- 207 (450)
T PRK06002 136 APPAMTRARVETGLRTGVR-----VIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVR-- 207 (450)
T ss_pred CCCCeEeecceEEcCCCcE-----Eeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHH--
Confidence 3457888999999976632 588885 999999999999999999999999999988 7898888654222111
Q ss_pred eeehhhhhhhHhhhccceeeEeC
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
.+....+...|++.++|++|..
T Consensus 208 -e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 208 -EFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred -HHhHHHHHHhhCCeEEEEEcCC
Confidence 1122233334555899999964
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.9e-11 Score=107.39 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=50.8
Q ss_pred cccCCCccceeeecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
..+..+|.|++|.+.|+.+|...+ .++++|| +|+|..+..+.+.|.++. +.+.-+|++||++.+
T Consensus 232 ~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~---~~~~QviitTHSp~i 301 (303)
T PF13304_consen 232 IPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELS---KKNIQVIITTHSPFI 301 (303)
T ss_dssp GGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTG---GGSSEEEEEES-GGG
T ss_pred EeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhC---ccCCEEEEeCccchh
Confidence 456678999999998888887766 7899999 999999999999998873 247899999997654
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.3e-09 Score=106.88 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=66.1
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc---ceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~---G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+++++ |++.+|++++|+||||||||||+++|+|+.+ +. |.|-.+|.++.+.... ...+....| ..+++++|
T Consensus 145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~---~l~~~gl~r-svvv~~~~ 219 (434)
T PRK07196 145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEH---SLQAAGMAK-SVVVAAPA 219 (434)
T ss_pred eccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHH---Hhhhcccce-EEEEEecC
Confidence 79999 9999999999999999999999999999987 54 3333333333211100 001111123 36899999
Q ss_pred eCCCCChhhhhhhHHHHHhhhh
Q 016817 163 DSRGFNYNRVHEGLEELSSWMS 184 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~ 184 (382)
+...+..+++.++...++..+.
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr 241 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYR 241 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhh
Confidence 9888888999999887775553
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-09 Score=109.48 Aligned_cols=161 Identities=16% Similarity=0.073 Sum_probs=91.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
++++.++.+++|.+++++||||+||||++..|++.+. ..|.. +|+++.+|+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~---------------------------kV~LI~~Dt- 296 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS---------------------------KVALLTTDS- 296 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC---------------------------eEEEEeCCc-
Confidence 4677788888999999999999999999999999876 55531 456677775
Q ss_pred CCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeecc---eeeeehhHH-----HHHH
Q 016817 166 GFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD---FAMVVSNIA-----EIYK 236 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva---IAraL~~~P-----~iLL 236 (382)
...++.|++..++..++... .............++.+. ....+.+. |..||.. -+.+++.++ .+|+
T Consensus 297 --~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~-d~VLIDTa--Gr~~~d~~~~e~~~~l~~~~~p~e~~LV 371 (484)
T PRK06995 297 --YRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK-HIVLIDTI--GMSQRDRMVSEQIAMLHGAGAPVKRLLL 371 (484)
T ss_pred --cchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC-CeEEeCCC--CcChhhHHHHHHHHHHhccCCCCeeEEE
Confidence 23667778876554443111 111222223344555543 23566664 4333331 112222222 3444
Q ss_pred HHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 237 ALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 237 LDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||... ....+.+.++.+ +..+.+-+|.|+ +++..+....+-+..
T Consensus 372 LdAt~---~~~~l~~i~~~f---~~~~~~g~IlTK---lDet~~~G~~l~i~~ 415 (484)
T PRK06995 372 LNATS---HGDTLNEVVQAY---RGPGLAGCILTK---LDEAASLGGALDVVI 415 (484)
T ss_pred EeCCC---cHHHHHHHHHHh---ccCCCCEEEEeC---CCCcccchHHHHHHH
Confidence 44411 224455555554 335678888998 444555555444443
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.3e-10 Score=99.45 Aligned_cols=80 Identities=14% Similarity=-0.145 Sum_probs=59.7
Q ss_pred ccccCCCccceee------ecceeeeehhHHHHHHHHh---cCC---CCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 208 IDDLKSSPKYVLR------RVDFAMVVSNIAEIYKALK---AGD---SKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 208 ~~~~~~LSGGqkQ------RvaIAraL~~~P~iLLLDE---~LD---~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+..+..+|+|++| ....+.+...+|+++++|| .+| ...+..+.++++.+ ++.|.|+|+++|+...
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l---~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL---KRFGVTTLLTSEQSGL 142 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH---HHCCCEEEEEeccccC
Confidence 3778899999998 4444445567899999999 677 66667777888877 4468999999996554
Q ss_pred C-------hhhhhhhhhhhhhh
Q 016817 276 S-------TEERLDARLKICEY 290 (382)
Q Consensus 276 ~-------~~~~~~d~v~ll~~ 290 (382)
. .+..++|.++.++.
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred CCcccCcCceeEeeeEEEEEEE
Confidence 2 14567788887765
|
A related protein is found in archaea. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-10 Score=119.28 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=63.6
Q ss_pred CCCccceeeecceeeeehhH----HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNI----AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~----P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
..|||||+|||+||++++.. |++||+|| +||+.+...+.+.|+++. .+.|||+|||++.+ +. +||+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~----~~~~vi~iTH~~~~--~~-~ad~ 511 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS----ERHQVLCVTHLPQV--AA-HADA 511 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEEChHHH--HH-hcCe
Confidence 36999999999999999986 58999999 999999999999999983 47999999997665 54 7899
Q ss_pred hhhhhh
Q 016817 285 LKICEY 290 (382)
Q Consensus 285 v~ll~~ 290 (382)
++++++
T Consensus 512 ~~~l~k 517 (563)
T TIGR00634 512 HFKVEK 517 (563)
T ss_pred EEEEEE
Confidence 888876
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.4e-09 Score=107.59 Aligned_cols=144 Identities=12% Similarity=0.049 Sum_probs=99.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+.++-+.++..|..+-+ +++++ |.+.+|+.++|+|+||+|||||+++|+|..+ +.|.|.+.|+.-
T Consensus 129 ~~~~r~~i~~~l~TGir-----aID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------- 194 (432)
T PRK06793 129 HAFEREEITDVFETGIK-----SIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------- 194 (432)
T ss_pred CchheechhhccCCCCE-----EEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------
Confidence 35677778877865532 57774 9999999999999999999999999999988 777776665411
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.++.+.+... ++ .+ ++.. .+- ......|.|+|+|+
T Consensus 195 --------------------------~ev~e~~~~~---l~~~g----------l~~t----vvv-~~tsd~s~~~r~ra 230 (432)
T PRK06793 195 --------------------------REVKDFIRKE---LGEEG----------MRKS----VVV-VATSDESHLMQLRA 230 (432)
T ss_pred --------------------------ccHHHHHHHH---hhhcc----------ccee----EEE-EECCCCCHHHHHHH
Confidence 1222222111 00 00 0000 001 34567799999999
Q ss_pred ceeeeeh-------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEec
Q 016817 223 DFAMVVS-------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTH 271 (382)
Q Consensus 223 aIAraL~-------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTH 271 (382)
+.+.+.+ .++-+|++|+ ..|+. +++-..+.+. ...|.+..+.||
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~---p~~G~~~~~~s~ 284 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKEL---PIGGKTLLMESY 284 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCC---CCCCeeeeeecc
Confidence 9987766 5788999999 66664 6676677777 224788888888
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-09 Score=99.44 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCCceeeeeeecccCCCchhH-HHHHHHhhc-ccceeeeE
Q 016817 94 DIPPVITILLMGFSGSGKSSL-VNLMYSVLS-RSGLVLFA 131 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTL-l~~i~Gl~~-~~G~I~i~ 131 (382)
.+++|+++.|+|||||||||| +++++++.+ ....+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 578999999999999999999 699998876 44445554
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-08 Score=90.44 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=40.1
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
.+-+.+.+++|+.++|+||||||||||+++|+|+++ +.|.|.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 444567788999999999999999999999999999 7899988654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.4e-10 Score=116.44 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=61.7
Q ss_pred CCccceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
.|||||+|||+||++++. +|+++|+|| +||+.+...+.+.|+++. .+.+||+|||++.+ + .+||+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~----~~~qvi~iTH~~~~--~-~~ad~~ 502 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG----ESTQVMCVTHLPQV--A-GCGHQH 502 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHH--H-HhCCEE
Confidence 389999999999999997 589999999 999999999999999983 36899999997765 5 577777
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
+.+.+
T Consensus 503 ~~v~k 507 (553)
T PRK10869 503 FFVSK 507 (553)
T ss_pred EEEec
Confidence 77765
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-09 Score=123.11 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=65.7
Q ss_pred ccccCCCccceeeecceeeeehh--------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCC
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSN--------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLS 276 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~--------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~ 276 (382)
++++.+|||||+|+++||+||+. +|++|++|| +||+.+...+++.|..+ ++.|+||+||||...+
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l---~~~g~~v~iisH~~~l- 1019 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL---NASGKTIGVISHVEAM- 1019 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---HHCCCEEEEEecHHHH-
Confidence 38899999999999999999996 899999999 99999999999999998 4469999999995444
Q ss_pred hhhhhhhhhhhhh
Q 016817 277 TEERLDARLKICE 289 (382)
Q Consensus 277 ~~~~~~d~v~ll~ 289 (382)
..++..+|.|-.
T Consensus 1020 -~~~i~~qi~V~k 1031 (1047)
T PRK10246 1020 -KERIPVQIKVKK 1031 (1047)
T ss_pred -HHhccceEEEEE
Confidence 555555555554
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-09 Score=92.09 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=28.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
++.|.||||+||||+++.+++... ..|.+.+.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 478999999999999999999887 6677766554
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.1e-08 Score=86.93 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=47.0
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
+|++++|+||||||||||+++|+|++.. +.++|.++... .. .|....|+.+|+...+++.++..++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~~~--------~~---~r~~~~g~~~~~~~~~~~~~~~~~~ 67 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLHPA--------KN---IDKMSQGIPLTDEDRLPWLERLNDA 67 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccCCH--------hH---HHHHhcCCCCCcccchHHHHHHHHH
Confidence 5999999999999999999999998763 46777654211 11 2222456777775556666766666
Q ss_pred HH
Q 016817 177 EE 178 (382)
Q Consensus 177 ~~ 178 (382)
.+
T Consensus 68 ~~ 69 (176)
T PRK09825 68 SY 69 (176)
T ss_pred HH
Confidence 43
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-08 Score=90.47 Aligned_cols=56 Identities=7% Similarity=0.044 Sum_probs=37.6
Q ss_pred ceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
+++++|.++|+++++||--|++. +...++.. ..|.+++.++|..+. + ...+|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEird~e~---~~~~l~~a----~~G~~v~~t~Ha~~~--~-~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMRDLET---IRLALTAA----ETGHLVMSTLHTNSA--A-KTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCCCHHH---HHHHHHHH----HcCCEEEEEecCCcH--H-HHHhHHHhh
Confidence 37888999999999999445443 33333322 368899999995544 4 455666554
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-08 Score=101.12 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=71.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhcccee----
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC---- 160 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v---- 160 (382)
+++++ |.+.+|+.++|+|+||+|||||+++|+|+.+ +.|.|.+.|+.-.+.. ......... +..+.+++
T Consensus 154 aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~---~~~~~~l~~-~g~~~svvvvat 228 (442)
T PRK06315 154 CIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVR---EFIEGDLGE-EGMKRSVIVVST 228 (442)
T ss_pred EEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHH---HHHHHHHHh-cCCceEEEEEeC
Confidence 68888 9999999999999999999999999999985 4577777563211110 111111111 11234555
Q ss_pred -eEeCC--CCChhhhhhhHHHHHhhhhcC----ccccccccccCcccccc----ccccccccCCCc
Q 016817 161 -VYDSR--GFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMK----NDAEIDDLKSSP 215 (382)
Q Consensus 161 -~Q~~~--l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~----~~~~~~~~~~LS 215 (382)
+|++. +.+.+ +...+.+.....+.. .....+..++++.+++. +.....+|+.||
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 77752 33333 344443322112111 12235566778888883 222336777665
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-08 Score=89.48 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=47.1
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+..+..|.||-=---+.+.+.. --|++||| +|-|.-+..++..|+++ .+.|.-+||+||.+-+
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~l---a~sGaQ~IiATHSPiL 190 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDL---ADSGAQIIIATHSPIL 190 (233)
T ss_pred cchhhhccchHHHHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHH---HhcCCeEEEEecChhh
Confidence 4456678888544334444333 45899999 99999999999999999 4578999999995543
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-09 Score=118.23 Aligned_cols=76 Identities=8% Similarity=-0.004 Sum_probs=64.3
Q ss_pred cccCCCccceee------ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhh
Q 016817 209 DDLKSSPKYVLR------RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEE 279 (382)
Q Consensus 209 ~~~~~LSGGqkQ------RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~ 279 (382)
+++..|||||+| |++||++++.+|+++|+|| +||+..+..+.++|..+ ...+.|||+||||+.+ .
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~---~~~~~~iiiith~~~~---~ 857 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERY---LRKIPQVIIVSHDEEL---K 857 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHH---HhcCCEEEEEECCHHH---H
Confidence 788999999999 5566678889999999999 99999999999999887 2346799999997654 4
Q ss_pred hhhhhhhhhhh
Q 016817 280 RLDARLKICEY 290 (382)
Q Consensus 280 ~~~d~v~ll~~ 290 (382)
.+||++++|..
T Consensus 858 ~~~d~~~~l~~ 868 (880)
T PRK03918 858 DAADYVIRVSL 868 (880)
T ss_pred HhCCeEEEEEe
Confidence 67888888864
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-08 Score=100.53 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=64.2
Q ss_pred CccccchhHHHHHHhhhhhh---cCcCchhHHHHHhhhcccCCeeeecCCcc-----------cCCCCCCceeeeeeecc
Q 016817 41 NVSTLTPRLRVLREMERLAL---IAPDGLNELRHKFLSYRSGDFWIPIGGIQ-----------KGGMDIPPVITILLMGF 106 (382)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~nvs~~y~~~~~~v~~~vL~-----------~isl~i~~Ge~~alvGp 106 (382)
....+.+|+.++++.++... ......++|+||++.|++.. . +|+ |+++.|.+|+.++|+||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er-~----~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNER-L----RLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred eccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCcc-c----eeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 34566799999999887521 22345799999999998654 2 486 99999999999999999
Q ss_pred cCCCchhHHHHHHHhhc
Q 016817 107 SGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 107 nGsGKSTLl~~i~Gl~~ 123 (382)
+|||||||++.|+..+.
T Consensus 177 ~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCChhHHHHHHHHhhc
Confidence 99999999999999876
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-08 Score=95.17 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=36.3
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeE
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~ 131 (382)
+++.+..|+.++|+||+|||||||+++|+++++ ..|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 467788999999999999999999999999998 67777664
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-07 Score=86.26 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=44.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcc--cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR--SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~--~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
++|++++|+||||||||||++.|+++++. .+.+..|+.-.. ..... .+ ...++.+|++..|+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~---------~~~~~-~~-~~~~~~~~~~~~~~~~~l~ 72 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKD---------QSHLE-MA-ERKKTNFDHPDAFDNDLLY 72 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccC---------hhhCC-HH-HhcCCCCCCccHhHHHHHH
Confidence 67999999999999999999999999873 344443332100 00110 12 2567888877666644444
Q ss_pred hhH
Q 016817 174 EGL 176 (382)
Q Consensus 174 eni 176 (382)
+.+
T Consensus 73 ~~l 75 (207)
T TIGR00235 73 EHL 75 (207)
T ss_pred HHH
Confidence 444
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-08 Score=115.26 Aligned_cols=75 Identities=11% Similarity=0.055 Sum_probs=63.4
Q ss_pred ccccCCCccceeeecceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
+.++..|||||+||++||++++ .+|+++|||| +||+.+...+.++|..+. .+.++|||||++.+ + .
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~----~~~~~i~~sh~~~~--~-~ 1156 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS----KNTQFIVITHNKGT--M-E 1156 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc----cCCEEEEEEcChhH--H-H
Confidence 4788999999999999999985 5679999999 999999999999999973 34789999997665 5 4
Q ss_pred hhhhhhhhh
Q 016817 281 LDARLKICE 289 (382)
Q Consensus 281 ~~d~v~ll~ 289 (382)
+||+++.+.
T Consensus 1157 ~~d~~~~~~ 1165 (1179)
T TIGR02168 1157 VADQLYGVT 1165 (1179)
T ss_pred HhhhHeeee
Confidence 578776543
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-07 Score=88.75 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=55.3
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhh-HhhhccceeeEeCCCCChhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNV-MRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~-~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
++|++++++|||||||||++..|++.+. ..|+|.+.+.|...... ..+... ..+..+++++|.....+..++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a-----~eql~~~a~~~~i~~~~~~~~~dpa~~v~ 186 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAA-----IEQLQVWGERVGVPVIAQKEGADPASVAF 186 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhh-----HHHHHHHHHHcCceEEEeCCCCCHHHHHH
Confidence 5789999999999999999999999998 67899998877532211 111111 1123688999876656656666
Q ss_pred hhHH
Q 016817 174 EGLE 177 (382)
Q Consensus 174 eni~ 177 (382)
+++.
T Consensus 187 ~~l~ 190 (318)
T PRK10416 187 DAIQ 190 (318)
T ss_pred HHHH
Confidence 7664
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-08 Score=115.71 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=61.0
Q ss_pred cccCCCccceee------ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCcccc--ccCCCCeEEEecCCCCCh
Q 016817 209 DDLKSSPKYVLR------RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLR--KCNENPILILTHGDMLST 277 (382)
Q Consensus 209 ~~~~~LSGGqkQ------RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~--~~~g~tiIiiTHd~~l~~ 277 (382)
..++.|||||+| |++||||++.+|++|+||| +||+.+...+.+.|..+... ...|.|||+||||+..
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-- 1272 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-- 1272 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH--
Confidence 355789999999 9999999999999999999 99999999998888776210 1247899999997766
Q ss_pred hhhhhh
Q 016817 278 EERLDA 283 (382)
Q Consensus 278 ~~~~~d 283 (382)
+..+|.
T Consensus 1273 ~~~~~~ 1278 (1311)
T TIGR00606 1273 VELLGR 1278 (1311)
T ss_pred HHHHhh
Confidence 777664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5e-08 Score=107.17 Aligned_cols=64 Identities=3% Similarity=-0.033 Sum_probs=52.3
Q ss_pred cccCCCccceeeecceeeee----------------------hhHHHHHHHHh---cC-CCCcchhhhhhccCccccccC
Q 016817 209 DDLKSSPKYVLRRVDFAMVV----------------------SNIAEIYKALK---AG-DSKPLDATKRLFSAPGLRKCN 262 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL----------------------~~~P~iLLLDE---~L-D~~~~~~i~~~l~~l~~~~~~ 262 (382)
.....||+|+.|.+.|...+ ..+|+++++|| +| |+.....+.+.++.+ ++.
T Consensus 608 ~~~d~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~---RK~ 684 (818)
T PRK13830 608 AEEDGLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVL---RKA 684 (818)
T ss_pred CCccccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHH---HHc
Confidence 55677999988888776554 35789999999 89 689999999999997 557
Q ss_pred CCCeEEEecCCCC
Q 016817 263 ENPILILTHGDML 275 (382)
Q Consensus 263 g~tiIiiTHd~~l 275 (382)
|.+++++||++..
T Consensus 685 ~~~vil~Tq~~~d 697 (818)
T PRK13830 685 NCAVVLATQSISD 697 (818)
T ss_pred CCEEEEEeCCHHH
Confidence 8999999995544
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-08 Score=112.88 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=63.3
Q ss_pred cccCCCccceeeecce------eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCC-CCeEEEecCCCCChh
Q 016817 209 DDLKSSPKYVLRRVDF------AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNE-NPILILTHGDMLSTE 278 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaI------AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g-~tiIiiTHd~~l~~~ 278 (382)
..+..|||||+||++| ||+++.+|++++||| +||+..+..+.++|.... ....+ .|+|+||||+.+ +
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~-~~~~~~~~ii~ish~~~~--~ 873 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSL-KDSSDIPQVIMISHHREL--L 873 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHH-HhcCCCCeEEEEECchHH--H
Confidence 5688999999999975 599999999999999 999999999999887542 11123 489999998765 5
Q ss_pred hhhhhhhhhhhh
Q 016817 279 ERLDARLKICEY 290 (382)
Q Consensus 279 ~~~~d~v~ll~~ 290 (382)
.+||+++.+..
T Consensus 874 -~~~d~ii~~~~ 884 (895)
T PRK01156 874 -SVADVAYEVKK 884 (895)
T ss_pred -HhcCeEEEEEe
Confidence 57888887764
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.6e-08 Score=88.19 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeeeEeec
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS 134 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~ 134 (382)
++||+||||||||||.++|++++ ..|.+.+.+.|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCCeEEEEec
Confidence 58999999999999999999988 44555555554
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-08 Score=90.24 Aligned_cols=59 Identities=8% Similarity=-0.044 Sum_probs=40.3
Q ss_pred Cccceeeecceeeeehh--HHHHHHHHh---cCCCCcchhhhh---hccCccccccCCCCeEEEecCCCC
Q 016817 214 SPKYVLRRVDFAMVVSN--IAEIYKALK---AGDSKPLDATKR---LFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~--~P~iLLLDE---~LD~~~~~~i~~---~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
.|.++.+.+..++.++. +|+++++|| .+|......+.+ .++.+ ++.|.|+++++|+...
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l---~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNL---VDLGKTILITLHPYAF 167 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHH---HhCCCEEEEEecCCcC
Confidence 45677788888888877 789999999 334444443444 45544 3468899999996544
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.8e-08 Score=90.03 Aligned_cols=170 Identities=12% Similarity=0.004 Sum_probs=83.9
Q ss_pred cccC-CCCCCceeeeeeecccCCCchhHHHHHH--HhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 88 IQKG-GMDIPPVITILLMGFSGSGKSSLVNLMY--SVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 88 L~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i~--Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
|+.+ .=-+++|+++.|.||+|||||||...++ ++.+..+-+++..... ..+..... +.+|+.+|+.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~----------~~~i~~~~-~~~g~~~~~~ 77 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES----------RESIIRQA-AQFGMDFEKA 77 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC----------HHHHHHHH-HHhCCCHHHH
Confidence 5443 3368999999999999999999988655 3333445566655311 11111111 3677777764
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc--ccccCCCccceeeecceeeeehhHHHHHHHHhcCC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE--IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGD 242 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD 242 (382)
...+.+.+.+.+... . ... . .+..+.+.+... .+....+. ....|+++-.+..+++||
T Consensus 78 ~~~~~l~i~d~~~~~------~-~~~---~-~~~~~~~~~~~~~i~~~~~~~~------~~~~~vvIDsl~~l~~~~--- 137 (229)
T TIGR03881 78 IEEGKLVIIDALMKE------K-EDE---W-SLRELSIEELLNKVIEAKKYLG------YGHARLVIDSMSAFWLDK--- 137 (229)
T ss_pred hhcCCEEEEEccccc------c-ccc---c-ccccCCHHHHHHHHHHHHHhhc------cCceEEEecCchhhhccC---
Confidence 333333333322100 0 000 0 000111111100 00000110 113567777777777776
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCC------hhhhhhhhhhhhhh
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLS------TEERLDARLKICEY 290 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~------~~~~~~d~v~ll~~ 290 (382)
+.....+...|.+.+ ++.|.|+|+++|..... .+..+||-|+.++.
T Consensus 138 ~~~~r~~~~~l~~~l--~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~~ 189 (229)
T TIGR03881 138 PAMARKYSYYLKRVL--NRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFRK 189 (229)
T ss_pred hHHHHHHHHHHHHHH--HhCCCEEEEEecccccCCCCcccceEEEEeEEEEEEE
Confidence 111233333333332 45699999999953321 23446777777765
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-08 Score=111.48 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=62.9
Q ss_pred cccCCCccceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL 281 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~ 281 (382)
+.+.+||||||++++||++|+. +|++++||| +||+.++..+.++|.++. .+.++|+|||+... . .+
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~----~~~~~i~~t~~~~~--~-~~ 1142 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA----GEAQFIVVSLRSPM--I-EY 1142 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc----CCCeEEEEECcHHH--H-Hh
Confidence 6778999999999999999985 679999999 999999999999999873 35789999997543 4 57
Q ss_pred hhhhhhhh
Q 016817 282 DARLKICE 289 (382)
Q Consensus 282 ~d~v~ll~ 289 (382)
||+++.+.
T Consensus 1143 ~d~~~~~~ 1150 (1164)
T TIGR02169 1143 ADRAIGVT 1150 (1164)
T ss_pred cceeEeEE
Confidence 78776554
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-07 Score=92.87 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=53.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc---ceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~---G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+++++ +.+.+|++++|+||||+|||||+++|++... +. |.|..+|+++.+.. .......+..++++|+.
T Consensus 141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~------~~~l~~~~~~~~~vV~~ 213 (428)
T PRK08149 141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFV------ESLRASSRREKCVLVYA 213 (428)
T ss_pred EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHH------HHHhhcccccceEEEEE
Confidence 69999 9999999999999999999999999999887 54 77877777553221 11112122247889988
Q ss_pred eCC
Q 016817 163 DSR 165 (382)
Q Consensus 163 ~~~ 165 (382)
...
T Consensus 214 ~sd 216 (428)
T PRK08149 214 TSD 216 (428)
T ss_pred CCC
Confidence 653
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.4e-07 Score=81.59 Aligned_cols=36 Identities=36% Similarity=0.334 Sum_probs=29.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecC
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i 135 (382)
|++++|+||||||||||+++|++.... .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEEC
Confidence 789999999999999999999987653 466655543
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-06 Score=77.60 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=44.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcc-----cceeehhhhhh-hHhhhccceeeEeCCCCChhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSS-----HTITMYMEEHN-VMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~-----~~~~~~~~~~~-~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|++++|+||||||||||++.|++.+...|.+.+....+.... ........+.. ..+...+++++|.+.++...+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 578999999999999999999998774465555332111000 00011111211 122335788888866655444
Q ss_pred h
Q 016817 172 V 172 (382)
Q Consensus 172 v 172 (382)
+
T Consensus 81 ~ 81 (179)
T TIGR02322 81 A 81 (179)
T ss_pred H
Confidence 3
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-06 Score=88.72 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=57.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|... +.|.+.+.|..-.+... ...+...... ...+++++++.
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~---~~~~~~~~~~-~~~tvvv~~~s 209 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVRE---FIEHHLGEEG-RKRSVLVVSTS 209 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHH---HHHHHhcccc-ccceEEEeccc
Confidence 69999 9999999999999999999999999999998 78888876663322110 0001110001 13567888887
Q ss_pred CCChhhhh
Q 016817 166 GFNYNRVH 173 (382)
Q Consensus 166 l~~~~tv~ 173 (382)
.+|..+..
T Consensus 210 ~~p~~~r~ 217 (422)
T TIGR02546 210 DRPSLERL 217 (422)
T ss_pred cCCHHHHH
Confidence 77765433
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.2e-07 Score=66.15 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=28.9
Q ss_pred cccCCCCCCc-eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPP-VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~-Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++.++++.+ |+++.|.||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4445566764 67999999999999999999986654
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=9e-07 Score=90.09 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=53.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
+.++.++++..|..+-+ +++++ |.+.+|+.++|+|+||+|||||+++|+|+.. +.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~-----aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIR-----AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCce-----eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 35677788888865532 69999 9999999999999999999999999999988 7887777776
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-07 Score=104.84 Aligned_cols=76 Identities=13% Similarity=-0.016 Sum_probs=62.1
Q ss_pred cccCCCccceee------ecceeeeehhH-----H-HHHHHHh---cCCCCcchhhhhhccCccccccCCC-CeEEEecC
Q 016817 209 DDLKSSPKYVLR------RVDFAMVVSNI-----A-EIYKALK---AGDSKPLDATKRLFSAPGLRKCNEN-PILILTHG 272 (382)
Q Consensus 209 ~~~~~LSGGqkQ------RvaIAraL~~~-----P-~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~-tiIiiTHd 272 (382)
..|..||||||| |++||++++.+ | +++|+|| +||+..+..+.++|..+ ...|. +||+||||
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~---~~~~~~qviiish~ 853 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESM---RRLGVEQIVVVSHD 853 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHH---HhcCCCeEEEEECC
Confidence 457899999999 99999999874 2 5799999 99999999999999987 33454 79999998
Q ss_pred CCCChhhhhhhhhhhhhh
Q 016817 273 DMLSTEERLDARLKICEY 290 (382)
Q Consensus 273 ~~l~~~~~~~d~v~ll~~ 290 (382)
+.+ +. .+|+++.+..
T Consensus 854 ~~~--~~-~ad~~~~~~~ 868 (880)
T PRK02224 854 DEL--VG-AADDLVRVEK 868 (880)
T ss_pred hHH--HH-hcCeeEEeec
Confidence 766 54 5777777753
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.3e-07 Score=88.33 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=50.5
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
++.+.-.+++|++++|+|+||+|||||++.|+|... ..|+|.+++..... + .+.+.+++++|+..+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~----t---------t~~~~l~~l~~~~~l 251 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH----T---------TTHRELHPLPSGGLL 251 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc----h---------hhhccEEEecCCCee
Confidence 444555678899999999999999999999999999 89999987642110 0 111367777777655
Q ss_pred CC
Q 016817 167 FN 168 (382)
Q Consensus 167 ~~ 168 (382)
++
T Consensus 252 ~D 253 (356)
T PRK01889 252 ID 253 (356)
T ss_pred cC
Confidence 54
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-06 Score=89.77 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=51.4
Q ss_pred eeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEE 178 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 178 (382)
-++||.||||||||||++.|+++++..|.|.+||... .. +.+++.|+++.+++..++.+++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~----------------~~-~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYND----------------SS-RIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceec----------------ch-hhhCccCCChhhcchhHHHHHHHH
Confidence 5999999999999999999999987778999998621 00 145678888888887788888854
Q ss_pred H
Q 016817 179 L 179 (382)
Q Consensus 179 ~ 179 (382)
.
T Consensus 129 L 129 (656)
T PLN02318 129 L 129 (656)
T ss_pred H
Confidence 3
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-06 Score=88.15 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=51.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc---ceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~---G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+++.+ |.+.+|++++|+|+||+|||||+++|+|+.+ +. |.|.+.|+++.+.-.. ....-. +..++|||
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~------~~~~~~-~~~tvVv~ 236 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIEN------ILGAEG-RARSVVIA 236 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHh------hcCcCC-CceEEEEE
Confidence 45555 9999999999999999999999999999988 53 8888888765321100 000001 25788999
Q ss_pred eCC
Q 016817 163 DSR 165 (382)
Q Consensus 163 ~~~ 165 (382)
++.
T Consensus 237 ~~a 239 (455)
T PRK07960 237 APA 239 (455)
T ss_pred ECC
Confidence 863
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-07 Score=101.25 Aligned_cols=101 Identities=5% Similarity=-0.094 Sum_probs=78.3
Q ss_pred CccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEec
Q 016817 197 DDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTH 271 (382)
Q Consensus 197 l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTH 271 (382)
|-.+||.-.-.+|...+|||||.||+.||.-+-..= =+++||| ||-+....++++.|+++ ++.|.|+|+|.|
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~L---RDlGNTviVVEH 541 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRL---RDLGNTVIVVEH 541 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHH---HhcCCeEEEEec
Confidence 445677644445889999999999999998775542 2689999 99999999999999999 778999999999
Q ss_pred CCCCChhhhhhhhhhhhhh---------cccccccceeeEE
Q 016817 272 GDMLSTEERLDARLKICEY---------LGVSEISGVYDIV 303 (382)
Q Consensus 272 d~~l~~~~~~~d~v~ll~~---------~~~~~~~~v~~~~ 303 (382)
|.+. +. .+|+|+=+-- +..|++++++..+
T Consensus 542 Dedt--i~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 542 DEDT--IR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CHHH--Hh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 6554 54 6676665532 5567777777654
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.5e-07 Score=81.15 Aligned_cols=71 Identities=17% Similarity=0.004 Sum_probs=58.7
Q ss_pred ceeeecceeeeehhHHHHHHHHh-cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK-AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE-~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+-+|..||.++..+|+.+..+| .+||.....+.+.+.+. .+.|.+|++.+|.+........||.+++++.
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le~ilhP~i~~~i~~~i~~~---~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLNNLLHPLIREWMKKLLAQF---QSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHHHhhCHHHHHHHHHHHHHh---hcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 88999999999999999999999 99999999999999886 3346799999995533345667777777654
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-06 Score=80.29 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=30.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i 130 (382)
.+..++||.||||||||||++.|+++++ .+|.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v 66 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAI 66 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceE
Confidence 4578999999999999999999999999 7888433
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.9e-06 Score=80.80 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=32.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeec
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTS 134 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~ 134 (382)
.-.++||.||||||||||+++|.+++. .+|+|.+-+.|
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 346999999999999999999999986 37888876664
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.4e-07 Score=87.26 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=41.3
Q ss_pred CcccCCCCC---Cceee-----eeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecC
Q 016817 87 GIQKGGMDI---PPVIT-----ILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i---~~Ge~-----~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i 135 (382)
+++++++.+ ++|+. +||+||||||||||++.|.+++. . .|.|.+||..+
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 578888887 56776 99999999999999999999997 3 57888888743
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.1e-07 Score=84.48 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=43.2
Q ss_pred cceeeecceee----------------eehhHHHHHHHHh--c------CCCCcchhhhhhccCccccccCCCCeEEEec
Q 016817 216 KYVLRRVDFAM----------------VVSNIAEIYKALK--A------GDSKPLDATKRLFSAPGLRKCNENPILILTH 271 (382)
Q Consensus 216 GGqkQRvaIAr----------------aL~~~P~iLLLDE--~------LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTH 271 (382)
+|+.|++.+++ +...+|+++++|. . +|+.....+++.|.+++ ++.|.|||+++|
T Consensus 80 ~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a--~~~g~avl~v~H 157 (239)
T cd01125 80 SGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIA--AQTGAAILLVHH 157 (239)
T ss_pred ccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHH--HHhCCEEEEEec
Confidence 56777877776 3346899999998 3 57777778888888874 456999999999
Q ss_pred CC
Q 016817 272 GD 273 (382)
Q Consensus 272 d~ 273 (382)
..
T Consensus 158 ~~ 159 (239)
T cd01125 158 VR 159 (239)
T ss_pred cC
Confidence 54
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-06 Score=90.63 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=52.6
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+.|+++.|+... +++++++.+..|+.++|+||||||||||++.|.|+++ .+|++.+++..+
T Consensus 187 ~~d~~~v~Gq~~------~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQ------GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHH------HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 347777664333 6899999999999999999999999999999999999 899999988754
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-06 Score=83.97 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=42.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|... +.|.+.+-|..
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 69999 9999999999999999999999999999998 77888777753
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-06 Score=96.76 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=37.0
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEee
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQT 133 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~ 133 (382)
++++.+++++++|+|++|+|||||++.+++-+. ..|.+.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 467788999999999999999999999977665 4899988763
|
syringae 6; Provisional |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.6e-06 Score=86.58 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=25.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++|..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999984
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.1e-06 Score=86.51 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=43.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|... +.|.|.+.|+.
T Consensus 153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 69999 9999999999999999999999999999988 88998888863
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.2e-06 Score=76.58 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=34.7
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecC
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSS 135 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i 135 (382)
++|.+++|+|+||||||||.+.|++.+. . .|.+.++|.++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 5789999999999999999999999876 3 56899988653
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.7e-06 Score=83.64 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=30.2
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEe
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQ 132 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G 132 (382)
.++..+.|.||+||||||+++.+.+.+. . .|.|....
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 4678999999999999999999999776 3 56665543
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.7e-06 Score=76.84 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=26.1
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999864
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.8e-06 Score=85.24 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=42.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|..+ +.|.+...|..
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 69999 9999999999999999999999999999988 77877776653
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.9e-06 Score=83.99 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=42.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+++ .+|.+.+|+.++|+|+||+|||||+++|+++.+ +.|.|.+.|..
T Consensus 130 aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 130 VID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred EEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 454 699999999999999999999999999999988 89998888874
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.3e-05 Score=77.77 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=34.3
Q ss_pred ccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee
Q 016817 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (382)
Q Consensus 89 ~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i 130 (382)
+.+...+. +++++++|+||+|||||+|.|.|... ..|+|..
T Consensus 153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 33444555 68999999999999999999999988 8898875
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.89 E-value=7e-06 Score=83.43 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=44.1
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+++++ |.+.+|++++|+|+||+|||||+++|++..+ +.|.|.+.|+..
T Consensus 127 ~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 127 AIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred eeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 69999 9999999999999999999999999999988 889888888643
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK11545 gntK gluconate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.5e-06 Score=73.16 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=41.9
Q ss_pred ecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHH
Q 016817 104 MGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEE 178 (382)
Q Consensus 104 vGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 178 (382)
+|+||||||||+++|++.+ |.+.++|..+.. ....+....|+.+|+....++.++.++..+
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~~-----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP-----------RRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCCc-----------hhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 6999999999999999886 677888742210 011222356888888655666777666654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.6e-06 Score=92.40 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=66.0
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccce--------eeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGL--------VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~--------I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
.+.+.|+||||+|||||+++|.++.. ..|+ |.++|..+. .. . . .+ ++ .++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d------~---~-----~i----~~-~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WD------P---R-----EV----TN-PLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CC------H---H-----HH----hH-HhcC
Confidence 45699999999999999999999875 4443 555554321 00 0 0 00 00 0111
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh--cCCCCcc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPL 246 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~ 246 (382)
. +.+.. .+...+.++.+|+.+... ..+.++||| +|++|| .||+..+
T Consensus 235 ~--~~~~~-------------~~~a~~~l~~~gl~~~~~-g~v~~asgG----------------vL~LDEi~~Ld~~~Q 282 (615)
T TIGR02903 235 S--VHDPI-------------YQGARRDLAETGVPEPKT-GLVTDAHGG----------------VLFIDEIGELDPLLQ 282 (615)
T ss_pred C--ccHHH-------------HHHHHHHHHHcCCCchhc-CchhhcCCC----------------eEEEeccccCCHHHH
Confidence 0 01111 011222355566665444 788899999 899999 9999999
Q ss_pred hhhhhhccC
Q 016817 247 DATKRLFSA 255 (382)
Q Consensus 247 ~~i~~~l~~ 255 (382)
..+++.|++
T Consensus 283 ~~Ll~~Le~ 291 (615)
T TIGR02903 283 NKLLKVLED 291 (615)
T ss_pred HHHHHHHhh
Confidence 988888875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.1e-06 Score=97.03 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=72.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
=+|++|. +.+.++.|.|||++||||+||.++-+.- .-|. |||-+..
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~-------------------------------~VPa~~a 645 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS-------------------------------FVPAESA 645 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC-------------------------------ceeccce
Confidence 4556666 5678999999999999999999986531 1221 3332211
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehh--HHHHHHHHh---c
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN--IAEIYKALK---A 240 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~--~P~iLLLDE---~ 240 (382)
..++.+ ++..++|..+ ....++|--+.....++++|-. ++.++|+|| |
T Consensus 646 ---~i~~~d--------------------~I~triga~d----~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrG 698 (854)
T PRK05399 646 ---RIGIVD--------------------RIFTRIGASD----DLASGRSTFMVEMTETANILNNATERSLVLLDEIGRG 698 (854)
T ss_pred ---EecccC--------------------eeeeccCccc----ccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 111111 1122223222 2234556655566666666544 889999999 4
Q ss_pred CCCCcch-hhhhhccCccccccCCCCeEEEecCCCC
Q 016817 241 GDSKPLD-ATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 241 LD~~~~~-~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
-++..-. ..+..++.+. +..+.++|++||+.++
T Consensus 699 Ts~~dg~aia~aile~l~--~~~~~~~l~aTH~~el 732 (854)
T PRK05399 699 TSTYDGLSIAWAVAEYLH--DKIGAKTLFATHYHEL 732 (854)
T ss_pred CCcchhHHHHHHHHHHHH--hcCCceEEEEechHHH
Confidence 4433333 3444555552 2236899999996444
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.1e-06 Score=83.33 Aligned_cols=63 Identities=16% Similarity=0.037 Sum_probs=50.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
+..+-+.++..|..+- .+++.+ |.+.+|++++|+|+||+|||||+++|++... +.+.+...|.
T Consensus 110 ~~~~R~~~~~~~~tGi-----~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGe 173 (411)
T TIGR03496 110 NPLKRAPIDEPLDVGV-----RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGE 173 (411)
T ss_pred CHHhccCcceEeeeeE-----Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEec
Confidence 3445556666665442 168888 9999999999999999999999999999988 7776666665
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.1e-05 Score=87.05 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=40.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc--eeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G--~I~i~G~~ 134 (382)
++++.++.+++|+++++|||||+||||++..|++.+. ..| +|.+-..|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 4778888898899999999999999999999999986 555 66665554
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.2e-06 Score=75.84 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=26.2
Q ss_pred eeeeecccCCCchhHHHHHHHhhc---ccceeee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS---RSGLVLF 130 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i 130 (382)
++||.||||||||||++.|.+++. .+|+|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999986 2455554
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.6e-06 Score=83.02 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=43.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+++++ +.+.+|++++|+|+||+|||||+++|++... +.+.|...|..-
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg 195 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG 195 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence 69999 9999999999999999999999999999887 788888777643
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=76.04 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=26.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
++||+|+||||||||++.|+++++ ..|.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi 31 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVI 31 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 589999999999999999999998 555443
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=76.84 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=31.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeee
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i 130 (382)
+|++++++|+||+|||||+|.|.|... ..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 589999999999999999999999988 8899876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 2e-12
Identities = 45/349 (12%), Positives = 92/349 (26%), Gaps = 111/349 (31%)
Query: 8 GEVDEYDPSGLVYCWWRSAAKFDECVKLKLD----------LPNVSTLTPRLRVLREMER 57
EV + Y + S K E + + L N + + + V R
Sbjct: 84 EEVLRIN-----YKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR---- 133
Query: 58 LALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNL 117
+LR L R +L+ G GSGK+ +
Sbjct: 134 -----LQPYLKLRQALLELRPAKN-------------------VLIDGVLGSGKTWVAL- 168
Query: 118 MYSVLSRSGLVLFAQTSSGNSSHTITM--YMEEHNVMRSLQS-------GFCVYDSRGFN 168
V + Q + + V+ LQ + N
Sbjct: 169 --DVCLSYKV----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 169 Y-NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA-- 225
R+H EL + + + CL L+ + ++++ + +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY--ENCL------LV-----LLNVQN--AKAWNAFNLSCK 267
Query: 226 -MVVSNIAEIYKALKAGDSKPL-----------DATKRLFS------APGLRK--CNENP 265
++ + ++ L A + + D K L L + NP
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 266 ILILTHGDMLS------------TEERLDARLKIC-EYLGVSEISGVYD 301
+ + + ++L ++ L +E ++D
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 5e-05
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 14/124 (11%)
Query: 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYME 147
+ + +TIL+MG G GKSS VN S++ + S +
Sbjct: 29 LGNLKQEDVNSLTILVMGKGGVGKSSTVN---SIIGER---VV---SISPFQSEGPRPVM 79
Query: 148 EHNVMRSLQSGFCVYDSRGFNYNRVH--EGLEELSSWMS-EGVHHNQRCLRSDDCALMKN 204
+ D+ G L + S++ + + R D +
Sbjct: 80 VSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNL 137
Query: 205 DAEI 208
D +
Sbjct: 138 DKLV 141
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 4e-04
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM--YSVLSRSGLVLFAQTSSGNSSHTIT 143
G + G T++++G SG GKS+L+N + + S +
Sbjct: 1 GPLGSGF-----EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK 55
Query: 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174
+ ++E V L + D+ GF +
Sbjct: 56 VLIKEGGVQLLL----TIVDTPGFGDAVDNS 82
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 8e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYM---EEHNVMRSLQ 156
T++++G SG GKS+L+N ++ V+ + I EE V L
Sbjct: 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL- 78
Query: 157 SGFCVYDSRGFNYN 170
V D+ G+
Sbjct: 79 ---TVVDTPGYGDA 89
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.93 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.92 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.91 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.9 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.89 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.88 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.87 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.86 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.86 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.86 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.85 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.84 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.84 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.83 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.82 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.8 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.76 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.75 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.74 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.74 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.73 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.73 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.71 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.7 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.7 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.69 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.69 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.68 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.67 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.66 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.65 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.62 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.62 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.61 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.61 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.61 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.6 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.6 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.6 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.6 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.6 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.58 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.56 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.56 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.55 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.55 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.55 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.54 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.54 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.54 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.51 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.51 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.5 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.5 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.49 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.48 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.48 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.47 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.45 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.44 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.43 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.4 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.4 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.38 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.38 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.36 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.35 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.35 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.33 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.29 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.28 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.22 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.21 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.2 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.18 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.17 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.16 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.16 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.13 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.12 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.12 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.09 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.03 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.01 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.98 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.93 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.91 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.89 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.87 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.87 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.86 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.85 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.81 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.79 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.79 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.77 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.71 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.7 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.65 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.64 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.64 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.64 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.63 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.63 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.58 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.58 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.5 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.49 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.48 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.45 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.41 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.39 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.38 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.37 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.35 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.33 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.28 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.24 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.11 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.05 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.04 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.03 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.02 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.96 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.95 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.95 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.89 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.88 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.88 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.87 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.78 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.73 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.71 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.7 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.7 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.69 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.56 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.53 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.52 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.51 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.51 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.5 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.46 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.43 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.37 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.33 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.33 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.32 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.28 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.28 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.27 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.26 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.26 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.23 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.21 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.12 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.12 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.11 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.11 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.1 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.1 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.04 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.04 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.0 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.98 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.98 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.97 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.96 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.94 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.92 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.91 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.88 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.86 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.85 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.85 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.85 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.84 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.83 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.81 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.8 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.78 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.72 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.72 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.7 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.66 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.66 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.64 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.64 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.64 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.62 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.56 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.56 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.54 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.54 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.52 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.52 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.52 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.5 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.48 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.4 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.39 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.37 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.36 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.34 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.32 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.3 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.27 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.27 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.25 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.25 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.25 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.24 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.24 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.24 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.23 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.21 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.21 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.21 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.21 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.2 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.19 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.19 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.18 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.17 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.17 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.17 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.15 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.14 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.13 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.13 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.13 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.13 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.13 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.13 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.12 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.11 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.08 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.08 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.07 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.07 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.07 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.07 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.06 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.05 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.04 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.04 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.03 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.03 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.03 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.01 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.01 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.0 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.0 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.99 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.99 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.99 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.98 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.98 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 95.95 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.95 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.94 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.94 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.94 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.94 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.93 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.93 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.9 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.9 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.89 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.87 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.87 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.85 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.84 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.84 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.83 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.83 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.83 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.82 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.82 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.81 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.81 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.81 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.8 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.8 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.79 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.79 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.78 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.77 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.77 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.77 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.75 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.74 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.73 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.73 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.72 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.71 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.71 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.7 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.69 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.69 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.69 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.68 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.68 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.68 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.67 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.66 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.65 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.65 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.65 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.64 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.64 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.63 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.62 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.62 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.61 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.59 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.58 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.57 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.57 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.57 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.57 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.57 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.56 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.56 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.56 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.56 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.54 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.54 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.53 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.52 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.51 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.48 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.47 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.45 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.44 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.42 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.4 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.4 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.4 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.39 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.39 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.38 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.37 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.36 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.36 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.36 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.34 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.32 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.32 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.31 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.3 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.3 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.3 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.28 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.27 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.26 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.26 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.26 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.26 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.25 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.25 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.24 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.23 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.15 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.13 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.09 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.07 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.05 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.02 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.01 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.0 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.97 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 94.92 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.92 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 94.92 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.9 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.87 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.86 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.84 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.82 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 94.79 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.77 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 94.76 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.75 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.7 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.68 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.62 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.51 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.49 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.46 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.44 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.44 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.43 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 94.39 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.38 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.33 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.29 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.25 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.1 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.09 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.09 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.07 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.06 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 94.06 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.05 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 94.0 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.91 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.84 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 93.79 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 93.75 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.72 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.69 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.65 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.58 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 93.57 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.52 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 93.52 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.49 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 93.46 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.33 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.32 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 93.31 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 93.27 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.22 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 93.2 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 93.18 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.17 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 93.17 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 93.15 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 93.07 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=410.41 Aligned_cols=225 Identities=15% Similarity=0.119 Sum_probs=187.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..++|+++||+++|+.+...+ .+|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~--~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~-- 96 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTI--QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS-- 96 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCC--
T ss_pred CCceEEEEeEEEEeCCCCCCe--EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC--
Confidence 456899999999997543222 16999999999999999999999999999999999999 8999999999875432
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+...+|+ .||||||++.+|+.+||++|+.+.....+. .....+++.++++.+||.+..+ ++|.+|||||||
T Consensus 97 ----~~~~~~~r~-~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQ 170 (366)
T 3tui_C 97 ----ESELTKARR-QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQ 170 (366)
T ss_dssp ----HHHHHHHHT-TEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHH
T ss_pred ----HHHHHHHhC-cEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHH
Confidence 233444564 899999999999999999999876433221 1122356788999999987654 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +.++||+|++|++ +..+
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~--~~~g~Tii~vTHdl~~--~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN--RRLGLTILLITHEMDV--VKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHSCCEEEEEESCHHH--HHHHCSEEEEEETTEEEECC
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH--HhCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999 999999999999999983 4569999999996666 9999999999987 5667
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++.+++.
T Consensus 247 ~~~ev~~ 253 (366)
T 3tui_C 247 TVSEVFS 253 (366)
T ss_dssp BHHHHHS
T ss_pred CHHHHHh
Confidence 7777774
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=404.58 Aligned_cols=214 Identities=14% Similarity=0.095 Sum_probs=181.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||+|+|++. . +|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~l~~~~l~~~yg~~--~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~---- 72 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV--V----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP---- 72 (381)
T ss_dssp CEEEEEEEEEETTE--E----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG----
T ss_pred EEEEEeEEEEECCE--E----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH----
Confidence 57899999999543 2 6999999999999999999999999999999999999 89999999998754332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.||||||++.+|+++||.||+.+.....+. ....++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 73 -------~~-r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~p~~LSGGqrQRVa 143 (381)
T 3rlf_A 73 -------AE-RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVA 143 (381)
T ss_dssp -------GG-SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-CCGGGSCHHHHHHHH
T ss_pred -------HH-CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhHCCHHHHHHHH
Confidence 12 3799999999999999999999876533221 1122356788999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||+|++|++ +..+++.
T Consensus 144 iArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~--~~~g~tii~vTHd~~e--a~~~aDri~vl~~G~i~~~g~~~ 219 (381)
T 3rlf_A 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH--KRLGRTMIYVTHDQVE--AMTLADKIVVLDAGRVAQVGKPL 219 (381)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHCCEEEEECSCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HhCCCEEEEEECCHHH--HHHhCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999 999999999999999983 4559999999995555 9999999999987 4556666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 220 ~l~~~ 224 (381)
T 3rlf_A 220 ELYHY 224 (381)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66643
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-51 Score=402.56 Aligned_cols=218 Identities=14% Similarity=0.090 Sum_probs=179.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||+|+|++. . +|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+....
T Consensus 4 ~l~i~~ls~~y~~~--~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~--- 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT--P----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN--- 74 (359)
T ss_dssp CEEEEEEEEEETTE--E----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCB---
T ss_pred EEEEEeEEEEECCE--E----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccc---
Confidence 68999999999543 2 6999999999999999999999999999999999999 899999999976321110
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
....+ +.||||||++.+|+++||++|+.+...... .....++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 75 ----~~~~~-r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRVa 148 (359)
T 3fvq_A 75 ----LPVRE-RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-RYPHELSGGQQQRAA 148 (359)
T ss_dssp ----CCGGG-SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-SCGGGSCHHHHHHHH
T ss_pred ----cchhh-CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHH
Confidence 01122 489999999999999999999976532211 11122356788999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|.++. ++.|+|+|+||||++. +..+||+|++|++ +..+++.
T Consensus 149 lArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~--~~~g~tvi~vTHd~~e--a~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL--RANGKSAVFVSHDREE--ALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHTTCEEEEECCCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHHCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999 999999999999888873 5579999999996555 9999999999987 5556666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 225 el~~~ 229 (359)
T 3fvq_A 225 ELYRQ 229 (359)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66643
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=376.53 Aligned_cols=212 Identities=19% Similarity=0.201 Sum_probs=172.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||+++|+.+.... ++|+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 ~l~~~~l~~~y~~~~~~~--~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~----- 73 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEII--YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD----- 73 (235)
T ss_dssp CEEEEEEEEEEEETTEEE--EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC-----
T ss_pred CEEEEEEEEEeCCCCcce--eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCC-----
Confidence 467899999997543211 15999999999999999999999999999999999999 8999999999875432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Cc---cccccccccCccccccccccccccCCCccceee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GV---HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+....|++.+||+||++.+|+.+||.+|+.+....... .. ...+++.++++.+++.+...+++|.+|||||||
T Consensus 74 -~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~Q 152 (235)
T 3tif_A 74 -DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ 152 (235)
T ss_dssp -HHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH
T ss_pred -HHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHH
Confidence 2233334444799999999999999999999875422111 11 123456678889999865435999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. + .+||++++|++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~g~tvi~vtHd~~~--~-~~~d~i~~l~~ 220 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN--EEDGKTVVVVTHDINV--A-RFGERIIYLKD 220 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHCCEEEEECSCHHH--H-TTSSEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEcCCHHH--H-HhCCEEEEEEC
Confidence 9999999999999999999 999999999999999983 3459999999997654 5 68999999976
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=380.56 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=178.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++|+++||+++|+++. . +|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 5 ~~~l~i~~ls~~y~~~~-~----~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~---- 75 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGT-H----ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYS---- 75 (275)
T ss_dssp CEEEEEEEEEEECTTSC-E----EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCS----
T ss_pred CcEEEEEEEEEEECCCC-e----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcc----
Confidence 35799999999996543 2 5999999999999999999999999999999999999 899999999976311
Q ss_pred eehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCcccee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
......+|+ .+||+||++ .+| .+||++|+.+.....+.. ....+++.++++.+||.+... ++|.+||||||
T Consensus 76 ---~~~~~~~~~-~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqk 149 (275)
T 3gfo_A 76 ---RKGIMKLRE-SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTHCLSFGQK 149 (275)
T ss_dssp ---HHHHHHHHH-SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHH
T ss_pred ---cccHHHHhC-cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHH
Confidence 112233454 899999986 345 589999998764322111 112356778899999987654 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
|||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||+|++|++ +..
T Consensus 150 QRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~--~~~g~tvi~vtHdl~~--~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 150 KRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ--KELGITIIIATHDIDI--VPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HHHCCEEEEEESCCSS--GGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH--hhCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999 999999999999999982 2459999999997777 8899999999986 555
Q ss_pred ccccceee
Q 016817 294 SEISGVYD 301 (382)
Q Consensus 294 ~~~~~v~~ 301 (382)
+++.+++.
T Consensus 226 g~~~~~~~ 233 (275)
T 3gfo_A 226 GNPKEVFA 233 (275)
T ss_dssp ECHHHHTH
T ss_pred CCHHHHhc
Confidence 66656653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=391.96 Aligned_cols=215 Identities=13% Similarity=0.043 Sum_probs=180.1
Q ss_pred CchhHHHHHhhhc-ccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 64 DGLNELRHKFLSY-RSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 64 ~~~i~i~nvs~~y-~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.++|+++|++++| ++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 12 ~~~l~~~~l~~~y~g~~~------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~- 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGAR------SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP- 84 (355)
T ss_dssp CEEEEEEEEEECCTTSTT------CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-
T ss_pred CceEEEEEEEEEEcCCCE------EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh-
Confidence 4589999999999 5433 6999999999999999999999999999999999999 89999999997753221
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.+ +.+|||||++.+|+++||+||+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||
T Consensus 85 ----------~~-r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~Q 152 (355)
T 1z47_A 85 ----------QK-RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-RFPHELSGGQQQ 152 (355)
T ss_dssp ----------GG-SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHH
T ss_pred ----------hh-CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHH
Confidence 22 38999999999999999999998754322111 112356788999999987655 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+
T Consensus 153 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--a~~~adri~vl~~G~i~~~g 228 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH--DEMGVTSVFVTHDQEE--ALEVADRVLVLHEGNVEQFG 228 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH--HHHTCEEEEECSCHHH--HHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEECCCHHH--HHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999 999999999999999983 4458999999996555 8899999999987 4445
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++.+++.
T Consensus 229 ~~~~l~~ 235 (355)
T 1z47_A 229 TPEEVYE 235 (355)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 5555654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=392.35 Aligned_cols=214 Identities=14% Similarity=0.053 Sum_probs=179.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~l~~~~l~~~y~~~--~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---- 72 (362)
T 2it1_A 3 EIKLENIVKKFGNF--T----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---- 72 (362)
T ss_dssp CEEEEEEEEESSSS--E----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG----
T ss_pred EEEEEeEEEEECCE--E----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH----
Confidence 57899999999543 2 5999999999999999999999999999999999999 89999999998754321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+|||||++.+|+++||++|+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 73 -------~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRva 143 (362)
T 2it1_A 73 -------KD-RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-RYPWQLSGGQQQRVA 143 (362)
T ss_dssp -------GG-TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHH
T ss_pred -------hH-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-CChhhCCHHHHHHHH
Confidence 12 37999999999999999999998754222111 112356788999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--a~~~adri~vl~~G~i~~~g~~~ 219 (362)
T 2it1_A 144 IARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ--KELGITTVYVTHDQAE--ALAMADRIAVIREGEILQVGTPD 219 (362)
T ss_dssp HHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH--HhCCCEEEEECCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4455666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 220 ~~~~~ 224 (362)
T 2it1_A 220 EVYYK 224 (362)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66643
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=392.71 Aligned_cols=214 Identities=12% Similarity=0.070 Sum_probs=178.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---- 72 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP---- 72 (359)
T ss_dssp CEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG----
T ss_pred EEEEEEEEEEECC--EE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh----
Confidence 5789999999953 22 5999999999999999999999999999999999999 89999999998754321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+|||||++.+|+++||++|+.+.....+ .....++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 73 -------~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSgGq~QRva 143 (359)
T 2yyz_A 73 -------KY-REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD-RKPTQLSGGQQQRVA 143 (359)
T ss_dssp -------GG-TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHH
T ss_pred -------hh-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHH
Confidence 12 379999999999999999999976432111 01112356778999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--~~~~adri~vl~~G~i~~~g~~~ 219 (359)
T 2yyz_A 144 LARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ--QELGITSVYVTHDQAE--AMTMASRIAVFNQGKLVQYGTPD 219 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHCCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4445666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 220 ~l~~~ 224 (359)
T 2yyz_A 220 EVYDS 224 (359)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66643
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=378.41 Aligned_cols=220 Identities=16% Similarity=0.062 Sum_probs=181.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++. + +|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 9 ~~~l~~~~l~~~~~~~--~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~-- 80 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQ--A----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP-- 80 (266)
T ss_dssp CCEEEEEEEEEEETTE--E----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH--
T ss_pred cceEEEEeEEEEeCCe--e----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH--
Confidence 3589999999999643 3 5999999999999999999999999999999999999 89999999998754321
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
. ..+ +.+||++|++.+++.+||.+|+.+..... ......+++.++++.+++.+..+ +++.+|||||||||
T Consensus 81 ----~---~~~-~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~QRv 150 (266)
T 4g1u_C 81 ----K---ALA-RTRAVMRQYSELAFPFSVSEVIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQ-RDYRVLSGGEQQRV 150 (266)
T ss_dssp ----H---HHH-HHEEEECSCCCCCSCCBHHHHHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTT-SBGGGCCHHHHHHH
T ss_pred ----H---HHh-heEEEEecCCccCCCCCHHHHHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHH
Confidence 1 133 37999999998877899999997643221 12223356778899999987654 99999999999999
Q ss_pred ceeeeehh------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 223 DFAMVVSN------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 223 aIAraL~~------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
+|||||++ +|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||++++|++
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~--~~~~~tvi~vtHdl~~--~~~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT--RQEPLAVCCVLHDLNL--AALYADRIMLLAQGKL 226 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH--HHSSEEEEEECSCHHH--HHHHCSEEEEEETTEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH--HcCCCEEEEEEcCHHH--HHHhCCEEEEEECCEE
Confidence 99999999 999999999 999999999999999983 4446799999996665 8899999999987
Q ss_pred cccccccceeeEEEe
Q 016817 291 LGVSEISGVYDIVCL 305 (382)
Q Consensus 291 ~~~~~~~~v~~~~~l 305 (382)
+..++++++++.+.+
T Consensus 227 ~~~g~~~~~~~~~~l 241 (266)
T 4g1u_C 227 VACGTPEEVLNAETL 241 (266)
T ss_dssp EEEECHHHHCCHHHH
T ss_pred EEEcCHHHHhCcHHH
Confidence 555666666654433
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=365.78 Aligned_cols=207 Identities=15% Similarity=0.075 Sum_probs=171.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 3 ~~l~~~~l~~~y~~--~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---- 72 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN---- 72 (224)
T ss_dssp EEEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSC----
T ss_pred cEEEEEeEEEEECC--Ee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCC----
Confidence 47899999999964 22 5999999999999999999999999999999999999 8999999999764322
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+...+|++.+||+||++.+|+.+|+.||+.+.....+.. ....+++.++++.+++.+... ++|.+|||||||||
T Consensus 73 --~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 73 --EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RKPYELSGGEQQRV 149 (224)
T ss_dssp --HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHH
T ss_pred --HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHH
Confidence 11222234347999999999999999999997654222111 112345778899999987655 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. + +|+|||+||||++. + .+||++++|++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~-~g~tvi~vtHd~~~--~-~~~d~v~~l~~ 214 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN--E-GGTSIVMVTHEREL--A-ELTHRTLEMKD 214 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--H-TTCEEEEECSCHHH--H-TTSSEEEEEET
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--H-CCCEEEEEcCCHHH--H-HhCCEEEEEEC
Confidence 99999999999999999 999999999999999983 3 48999999997654 6 68999998876
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-49 Score=392.28 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=172.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 11 ~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---- 80 (372)
T 1v43_A 11 EVKLENLTKRFGN--FT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---- 80 (372)
T ss_dssp CEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG----
T ss_pred eEEEEEEEEEECC--EE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh----
Confidence 5899999999954 22 5999999999999999999999999999999999999 89999999998753321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+|||||++.+|+++||++|+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 81 -------~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRva 151 (372)
T 1v43_A 81 -------KD-RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVA 151 (372)
T ss_dssp -------GG-GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHH
T ss_pred -------hh-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHH
Confidence 12 37999999999999999999997643211111 112346778899999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|.|+|+||||++. +..+||++++|++ +..+++.
T Consensus 152 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--a~~~adri~vl~~G~i~~~g~~~ 227 (372)
T 1v43_A 152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ--QKLKVTTIYVTHDQVE--AMTMGDRIAVMNRGQLLQIGSPT 227 (372)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4445666
Q ss_pred ceeeEE
Q 016817 298 GVYDIV 303 (382)
Q Consensus 298 ~v~~~~ 303 (382)
+++..+
T Consensus 228 ~l~~~p 233 (372)
T 1v43_A 228 EVYLRP 233 (372)
T ss_dssp HHHHCC
T ss_pred HHHhCc
Confidence 666443
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=385.58 Aligned_cols=210 Identities=15% Similarity=0.194 Sum_probs=176.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++|++++|++ . + |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+.+
T Consensus 1 ml~~~~l~~~y~~--~-~----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~----- 68 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-S----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS----- 68 (348)
T ss_dssp CEEEEEEEEECSS--C-E----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----
T ss_pred CEEEEEEEEEECC--E-E----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc-----
Confidence 4678999999953 2 4 999999999999999999999999999999999999 8999999999765321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+ +.+|||||++.+|+++||++|+.+.....+ ....+++.++++.++|.+..+ ++|.+|||||||||+|
T Consensus 69 ------~~~-r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~--~~~~~~v~~~l~~~~L~~~~~-~~~~~LSgGq~QRval 138 (348)
T 3d31_A 69 ------PEK-HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK--IKDPKRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVAL 138 (348)
T ss_dssp ------HHH-HTCEEECTTCCCCTTSCHHHHHHHHHHHHC--CCCHHHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHH
T ss_pred ------hhh-CcEEEEecCcccCCCCCHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHH
Confidence 123 389999999999999999999987543221 111266788999999987655 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.+
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~--~~~g~tii~vTHd~~~--~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH--KKNKLTVLHITHDQTE--ARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH--HHTTCEEEEEESCHHH--HHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999 999999999999999983 4569999999996554 8899999999987 34455555
Q ss_pred eee
Q 016817 299 VYD 301 (382)
Q Consensus 299 v~~ 301 (382)
++.
T Consensus 215 ~~~ 217 (348)
T 3d31_A 215 IFE 217 (348)
T ss_dssp HHS
T ss_pred HHh
Confidence 554
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-49 Score=392.36 Aligned_cols=220 Identities=10% Similarity=0.082 Sum_probs=178.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+.......
T Consensus 3 ~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEECC--EE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 5789999999953 22 5999999999999999999999999999999999999 899999999876421000001
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.. .+ +.+|||||++.+|+++||++|+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 77 ~~-----~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRva 149 (372)
T 1g29_1 77 PP-----KD-RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVA 149 (372)
T ss_dssp CG-----GG-SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHH
T ss_pred CH-----hH-CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CCcccCCHHHHHHHH
Confidence 11 12 37999999999999999999998754322111 112356778999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.
T Consensus 150 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ--RQLGVTTIYVTHDQVE--AMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEECCCHHH--HHHhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999 999999999999999983 4458999999996555 8899999999987 4455666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 226 ~l~~~ 230 (372)
T 1g29_1 226 EVYDK 230 (372)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66643
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-49 Score=371.23 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=171.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 5 ~~~l~i~~l~~~y~~~--~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~-- 76 (257)
T 1g6h_A 5 MEILRTENIVKYFGEF--K----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP-- 76 (257)
T ss_dssp CEEEEEEEEEEEETTE--E----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH--
T ss_pred CcEEEEeeeEEEECCE--e----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--
Confidence 4579999999999542 2 5999999999999999999999999999999999999 89999999997643211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh--hh-----------cC-ccccccccccCccccccccccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW--MS-----------EG-VHHNQRCLRSDDCALMKNDAEI 208 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~--~~-----------~~-~~~~~~~~~~l~~~~L~~~~~~ 208 (382)
....|+ .+||+||++.+|+.+||.||+.+.... .+ .. ....+++.++++.+|+.+...
T Consensus 77 ------~~~~~~-~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 148 (257)
T 1g6h_A 77 ------AELYHY-GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD- 148 (257)
T ss_dssp ------HHHHHH-TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-
T ss_pred ------HHHHhC-CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-
Confidence 111333 799999999999999999999764321 00 00 011245677899999986654
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ +++|+|||+||||++. +..+||++
T Consensus 149 ~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tvi~vtHd~~~--~~~~~d~v 223 (257)
T 1g6h_A 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL---KAKGITFLIIEHRLDI--VLNYIDHL 223 (257)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECSCCST--TGGGCSEE
T ss_pred CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEE
Confidence 9999999999999999999999999999999 99999999999999998 3348999999997766 88899999
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
++|++
T Consensus 224 ~~l~~ 228 (257)
T 1g6h_A 224 YVMFN 228 (257)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99976
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-49 Score=372.45 Aligned_cols=223 Identities=11% Similarity=0.065 Sum_probs=176.6
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc---cc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---SH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~---~~ 140 (382)
++|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++... ..
T Consensus 5 ~~l~i~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG--HE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CCEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTS
T ss_pred ceEEEeeEEEEECC--EE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccc
Confidence 47999999999953 23 5999999999999999999999999999999999999 899999999876310 00
Q ss_pred -ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcC-ccccccccccCcccccccc-ccccccCCCcc
Q 016817 141 -TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEG-VHHNQRCLRSDDCALMKND-AEIDDLKSSPK 216 (382)
Q Consensus 141 -~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~-~~~~~~~~~~l~~~~L~~~-~~~~~~~~LSG 216 (382)
.......+...+|+ .+||+||++.+|+.+||.+|+.+..... +.. ....+++.++++.+|+.+. .. ++|.+|||
T Consensus 79 ~~~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRT-RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHH-HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCH
T ss_pred cccccChhhHHHHhc-ceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-CCcccCCH
Confidence 00011122223454 7999999999999999999998743111 111 1123457788999999866 54 99999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
||||||+|||||+.+|++||||| +||+.++..++++|+++ .++|+|||+||||++. +..+||++++|++
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l---~~~g~tvi~vtHd~~~--~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL---AEEGKTMVVVTHEMGF--ARHVSSHVIFLHQGKI 231 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH---HHTTCCEEEECSCHHH--HHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEE
Confidence 99999999999999999999999 99999999999999998 3348999999996655 8889999999976
Q ss_pred ccccccccee
Q 016817 291 LGVSEISGVY 300 (382)
Q Consensus 291 ~~~~~~~~v~ 300 (382)
+..+++.+++
T Consensus 232 ~~~g~~~~~~ 241 (262)
T 1b0u_A 232 EEEGDPEQVF 241 (262)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 3344444444
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=367.14 Aligned_cols=206 Identities=11% Similarity=0.064 Sum_probs=169.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 4 ~~~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-- 75 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA--IH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA-- 75 (240)
T ss_dssp SEEEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH--
T ss_pred CceEEEEeEEEEECC--ee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCH--
Confidence 357999999999964 23 5999999999999999999999999999999999999 89999999997643211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-cccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~LSGGqkQR 221 (382)
.. .+++.+||+||++.+|+.+|+.||+.+............+.+.++++.+ ++.+... +++.+||||||||
T Consensus 76 ----~~---~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LSgGq~qr 147 (240)
T 1ji0_A 76 ----HV---INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQM 147 (240)
T ss_dssp ----HH---HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHH
T ss_pred ----HH---HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhc-CChhhCCHHHHHH
Confidence 11 2223699999999999989999999754211101111123456678888 4986655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++ .+.|+|||+||||++. +.++||++++|++
T Consensus 148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~---~~~g~tvi~vtHd~~~--~~~~~d~v~~l~~ 214 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI---NQEGTTILLVEQNALG--ALKVAHYGYVLET 214 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCCEEEEESCHHH--HHHHCSEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 99999999999999998 3368999999996555 8889999999976
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=371.75 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=175.6
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++||+++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++. .+.
T Consensus 23 ~~l~i~~l~~~y~~--~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~--- 92 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKD--- 92 (263)
T ss_dssp CSEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STT---
T ss_pred heEEEEeEEEEECC--EE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Ccc---
Confidence 37999999999953 22 5999999999999999999999999999999999999 8999999998763 111
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.....+|+ .+||+||++.+|+.+||.+|+.+..... +.. ....+++.++++.+++.+..+ +++.+||||||||
T Consensus 93 ---~~~~~~~~-~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQR 167 (263)
T 2olj_A 93 ---TNLNKVRE-EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-AYPDSLSGGQAQR 167 (263)
T ss_dssp ---CCHHHHHH-HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHH
T ss_pred ---ccHHHHhC-cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHH
Confidence 11122343 7999999999999999999997743111 111 112345778899999987654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++. ++|+|||+||||++. +.++||++++|++ +..++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~---~~g~tvi~vtHd~~~--~~~~~d~v~~l~~G~i~~~g~ 242 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA---NEGMTMVVVTHEMGF--AREVGDRVLFMDGGYIIEEGK 242 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH---HTTCEEEEECSCHHH--HHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---hCCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999 999999999999999983 348999999996655 8889999999976 33344
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+++++
T Consensus 243 ~~~~~ 247 (263)
T 2olj_A 243 PEDLF 247 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-49 Score=387.23 Aligned_cols=220 Identities=11% Similarity=0.095 Sum_probs=177.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++.... +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..... .
T Consensus 3 ~l~i~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~-- 75 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVV----ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK-L-- 75 (353)
T ss_dssp CEEEEEEEEEEGGGTEE----EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTE-E--
T ss_pred EEEEEeEEEEECCEeee----eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccc-c--
Confidence 58899999999642110 4999999999999999999999999999999999999 89999999987632100 0
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.....+ +.+|||||++.+|+++||++|+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 76 ---~~~~~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 76 ---IVPPED-RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVA 150 (353)
T ss_dssp ---SSCGGG-SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHH
T ss_pred ---cCChhh-CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHH
Confidence 001123 38999999999999999999997643211111 112356778999999987654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVSHDPAD--IFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH--HHHCCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4445555
Q ss_pred ceee
Q 016817 298 GVYD 301 (382)
Q Consensus 298 ~v~~ 301 (382)
+++.
T Consensus 227 ~l~~ 230 (353)
T 1oxx_K 227 DLYD 230 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=377.03 Aligned_cols=237 Identities=16% Similarity=0.132 Sum_probs=184.1
Q ss_pred ccCCCCccccchhHHHHHHhhhhh--------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeeccc
Q 016817 36 KLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFS 107 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpn 107 (382)
+-+++.+.++.+|+.++++.++.. .....+.|+++||+|+|+++. + +|+||||+|++||++||+|||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~-~----vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGR-E----TLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTC-E----EEEEEEEEECTTCEEEEESSS
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCC-c----eeeeeeEEEcCCCEEEEECCC
Confidence 346778888999999998877631 111235699999999996433 2 599999999999999999999
Q ss_pred CCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC
Q 016817 108 GSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG 186 (382)
Q Consensus 108 GsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~ 186 (382)
|||||||+++|+|+++ ++|+|.++|+++...+. ..+|+ .||||||++.+|+ .||++|+.+.. .
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~---------~~~r~-~i~~v~Q~~~lf~-~Tv~eNi~~~~-----~ 153 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ---------ASLRS-HIGVVPQDTVLFN-DTIADNIRYGR-----V 153 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH---------HHHHH-TEEEECSSCCCCS-EEHHHHHHTTS-----T
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH---------HHHhc-ceEEEecCCccCc-ccHHHHHHhhc-----c
Confidence 9999999999999999 89999999998764331 22554 8999999999997 69999996432 1
Q ss_pred ccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhc
Q 016817 187 VHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLF 253 (382)
Q Consensus 187 ~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l 253 (382)
....+.+.++++.+++.+.+. ++.+.+|||||||||+|||||+.+|+|||||| +||+.++..|++.|
T Consensus 154 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l 233 (306)
T 3nh6_A 154 TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233 (306)
T ss_dssp TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 122334455555555543322 14557899999999999999999999999999 99999999999999
Q ss_pred cCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 254 SAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 254 ~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+++. .++|+|+||||+.. +.. ||+|++|++ +..+++.+++
T Consensus 234 ~~l~----~~~Tvi~itH~l~~--~~~-aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 234 AKVC----ANRTTIVVAHRLST--VVN-ADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHH----TTSEEEEECCSHHH--HHT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHc----CCCEEEEEEcChHH--HHc-CCEEEEEECCEEEEECCHHHHH
Confidence 9973 47899999995544 776 899999987 4455554444
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-48 Score=367.72 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=171.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|+++||+++|++ .. +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 13 ~~~l~i~~l~~~y~~--~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~---- 82 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE---- 82 (256)
T ss_dssp -CCEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC----
T ss_pred CCeEEEEEEEEEECC--EE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc----
Confidence 358999999999953 23 5999999999999999999999999999999999999 899999999876421
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+|+ .+||+||++.+|+.+|+.+|+.+......... ...+++.++++.+||.+... +++.+||||||||
T Consensus 83 ------~~~~~~-~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qR 154 (256)
T 1vpl_A 83 ------PHEVRK-LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRK 154 (256)
T ss_dssp ------HHHHHT-TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHH
T ss_pred ------HHHHhh-cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHH
Confidence 112343 89999999999998999999987542221111 11245678899999987655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++ ++.|+|||+||||++. +..+||++++|++
T Consensus 155 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tiiivtHd~~~--~~~~~d~v~~l~~ 221 (256)
T 1vpl_A 155 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA---SQEGLTILVSSHNMLE--VEFLCDRIALIHN 221 (256)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEEECCHHH--HTTTCSEEEEEET
T ss_pred HHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHH--HHHHCCEEEEEEC
Confidence 999999999999999999 99999999999999998 3358999999996655 8889999999976
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=359.81 Aligned_cols=208 Identities=14% Similarity=0.065 Sum_probs=171.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++|++++|+ . +|+|+||+|++ |+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 1 ml~~~~l~~~y~--~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---- 67 (240)
T 2onk_A 1 MFLKVRAEKRLG--N------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP---- 67 (240)
T ss_dssp CCEEEEEEEEET--T------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT----
T ss_pred CEEEEEEEEEeC--C------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCch----
Confidence 467899999994 3 39999999999 9999999999999999999999999 89999999987643111
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.+||+||++.+|+.+|++||+.+.....+. ...++++.++++.+|+.+..+ ++|.+|||||||||+|
T Consensus 68 -------~~-~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~l 137 (240)
T 2onk_A 68 -------ER-RGIGFVPQDYALFPHLSVYRNIAYGLRNVER-VERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVAL 137 (240)
T ss_dssp -------TT-SCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH-HHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHH
T ss_pred -------hh-CcEEEEcCCCccCCCCcHHHHHHHHHHHcCC-chHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHH
Confidence 23 3799999999999999999999754211110 112356778899999987654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+.+|++||||| +||+.++..+++.|+++. ++.|+|||+||||++. +..+||++++|++ +..+++.+
T Consensus 138 Aral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~~g~tvi~vtHd~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ--REFDVPILHVTHDLIE--AAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH--HHHTCCEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999 999999999999999983 3358999999996655 8889999999986 33344444
Q ss_pred ee
Q 016817 299 VY 300 (382)
Q Consensus 299 v~ 300 (382)
++
T Consensus 214 ~~ 215 (240)
T 2onk_A 214 LF 215 (240)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-47 Score=349.04 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=168.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+|+++|++++|++ . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~---~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------ 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------ 74 (214)
T ss_dssp -CEEEEEEEEEESSS---E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------
T ss_pred CceEEEEEEEEEeCC---e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------
Confidence 357899999999954 3 5999999999999999999999999999999999999 8999999998542
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+ +.+||+||++.+|+.+|+.+|+.+....... ....+++.++++.+|+.+. ++++.+|||||||||
T Consensus 75 --------~~~-~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv 142 (214)
T 1sgw_A 75 --------KVK-GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRV 142 (214)
T ss_dssp --------GGG-GGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHH
T ss_pred --------hhc-CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHH
Confidence 023 3899999999999989999999765322211 1123567788999999866 499999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+++.|+++ .+.|+|||++|||++. +..+||+++++..
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~---~~~g~tiiivtHd~~~--~~~~~d~v~~~~~ 208 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI---LKEKGIVIISSREELS--YCDVNENLHKYST 208 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHH---HHHHSEEEEEESSCCT--TSSEEEEGGGGBC
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEeCC
Confidence 99999999999999999 99999999999999998 3348999999997766 8899999998865
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=352.09 Aligned_cols=204 Identities=13% Similarity=0.017 Sum_probs=162.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh--hc-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl--~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++||+++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+ ++ ++|+|.++|+++.....
T Consensus 3 ~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~-- 74 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-- 74 (250)
T ss_dssp EEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCH--
T ss_pred eEEEEeEEEEECC--EE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCH--
Confidence 5889999999954 23 59999999999999999999999999999999998 66 79999999997643221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcCc---cccccccccCcccccc-ccccccccCC-Ccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEGV---HHNQRCLRSDDCALMK-NDAEIDDLKS-SPK 216 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~---~~~~~~~~~l~~~~L~-~~~~~~~~~~-LSG 216 (382)
.. .++..++|+||++.+|+.+|+.+|+.+..... .... ...+++.++++.+|+. +.. ++++.+ |||
T Consensus 75 ----~~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~~LSg 146 (250)
T 2d2e_A 75 ----DE---RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-SRYLNEGFSG 146 (250)
T ss_dssp ----HH---HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-GSBTTCC---
T ss_pred ----HH---HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-cCCcccCCCH
Confidence 11 11236999999999999999999997643211 1111 1124567788999994 444 589999 999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+++.|+++ .+.|+|||+||||++. +..+ ||++++|++
T Consensus 147 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tvi~vtHd~~~--~~~~~~d~v~~l~~ 219 (250)
T 2d2e_A 147 GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM---RGPNFGALVITHYQRI--LNYIQPDKVHVMMD 219 (250)
T ss_dssp -HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHH---CSTTCEEEEECSSSGG--GGTSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhcCCEEEEEecCHHH--HHHhcCCEEEEEEC
Confidence 99999999999999999999999 99999999999999998 3368999999997666 8777 599998876
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=356.82 Aligned_cols=208 Identities=13% Similarity=0.019 Sum_probs=166.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCcc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~ 139 (382)
..++++++||+++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|++ + ++|+|.++|+++....
T Consensus 17 ~~~~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED--KA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp ---CEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred CCceEEEEeEEEEECC--EE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 4568999999999953 33 599999999999999999999999999999999994 5 7999999998753221
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh----hhcC-cc---ccccccccCcccccccccccccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW----MSEG-VH---HNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~----~~~~-~~---~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
... .++..++|+||++.+|+.+|+.+|+...... .... .. ..+++.++++.+|+.+...++++
T Consensus 91 ------~~~---~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 161 (267)
T 2zu0_C 91 ------PED---RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 161 (267)
T ss_dssp ------HHH---HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT
T ss_pred ------HHH---HhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 111 1123699999999999999999999764311 1110 01 12356778899999643344888
Q ss_pred C-CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhh
Q 016817 212 K-SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLK 286 (382)
Q Consensus 212 ~-~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~ 286 (382)
. +|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ +++|+|||+||||++. +..+ ||+++
T Consensus 162 ~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l---~~~g~tviivtHd~~~--~~~~~~d~v~ 236 (267)
T 2zu0_C 162 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL---RDGKRSFIIVTHYQRI--LDYIKPDYVH 236 (267)
T ss_dssp TTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTT---CCSSCEEEEECSSGGG--GGTSCCSEEE
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEeeCHHH--HHhhcCCEEE
Confidence 7 599999999999999999999999999 99999999999999998 3458999999997766 7775 89999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
+|++
T Consensus 237 ~l~~ 240 (267)
T 2zu0_C 237 VLYQ 240 (267)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9876
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=356.37 Aligned_cols=212 Identities=15% Similarity=0.085 Sum_probs=171.7
Q ss_pred hhHHHHHhhhcccCC---eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~---~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+++++|++++|+.+. .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---- 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKK----ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---- 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH----
T ss_pred EEEEEEEEEEecCCCccccc----eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch----
Confidence 578899999996222 33 5999999999999999999999999999999999999 89999999986531
Q ss_pred eeehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCcccccc--ccccccccCCCccce
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK--NDAEIDDLKSSPKYV 218 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~LSGGq 218 (382)
. .+|+ .+||+||++ .+++.+|+.+|+.+............+++.++++.+|+. +... ++|.+|||||
T Consensus 74 -----~---~~~~-~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq 143 (266)
T 2yz2_A 74 -----Y---EIRR-NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGE 143 (266)
T ss_dssp -----H---HHGG-GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHH
T ss_pred -----H---Hhhh-hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHH
Confidence 0 2443 799999995 455568999999764321101111234567889999998 7655 9999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
||||+|||||+.+|++||||| +||+.++..+++.|+++ .+.|+|||+||||++. +..+||++++|++ +.
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tii~vtHd~~~--~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW---KTLGKTVILISHDIET--VINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECSCCTT--TGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999 99999999999999998 3348999999997766 8888999999976 33
Q ss_pred ccccccee
Q 016817 293 VSEISGVY 300 (382)
Q Consensus 293 ~~~~~~v~ 300 (382)
.+++.+++
T Consensus 219 ~g~~~~~~ 226 (266)
T 2yz2_A 219 DGTRMEFL 226 (266)
T ss_dssp EEEHHHHH
T ss_pred eCCHHHHh
Confidence 44444454
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-47 Score=361.84 Aligned_cols=205 Identities=14% Similarity=0.044 Sum_probs=166.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC--Cccc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG--NSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~--~~~~ 140 (382)
..+|+++||+++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++. ...
T Consensus 19 ~~~l~~~~l~~~y~~--~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~- 91 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG--KT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS- 91 (279)
T ss_dssp CEEEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CC-
T ss_pred CceEEEEeEEEEECC--EE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCC-
Confidence 447999999999964 22 5999999999999999999999999999999999999 8999999998763 111
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCC--ChhhhhhhHHHHHhh----hhc-CccccccccccCccccccccccccccCC
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGF--NYNRVHEGLEELSSW----MSE-GVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~--~~~tv~eni~~~~~~----~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
...+|+ .+||+||++.++ +.+||+||+.+.... +.. .....+++.++++.+|+.+... +++.+
T Consensus 92 --------~~~~~~-~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~ 161 (279)
T 2ihy_A 92 --------AETVRQ-HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-QYIGY 161 (279)
T ss_dssp --------HHHHHT-TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-SBGGG
T ss_pred --------HHHHcC-cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-CChhh
Confidence 112343 799999997543 346999999753211 100 1112245677899999986654 99999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCe--EEEecCCCCChhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPI--LILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ti--IiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||||||||+|||||+.+|++||||| +||+.++..++++|+++. + +|+|| |+||||++. +..+||++++|
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~--~-~g~tv~~iivtHd~~~--~~~~~d~v~~l 236 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS--D-SYPTLAMIYVTHFIEE--ITANFSKILLL 236 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--H-HCTTCEEEEEESCGGG--CCTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHH--H-CCCEEEEEEEecCHHH--HHHhCCEEEEE
Confidence 99999999999999999999999999 999999999999999983 3 48999 999997665 88899999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 237 ~~ 238 (279)
T 2ihy_A 237 KD 238 (279)
T ss_dssp ET
T ss_pred EC
Confidence 76
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-46 Score=371.09 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=174.7
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccce
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~ 142 (382)
..+.|+++||+|+|+.+... +|+|+||+|++||+++|+||||||||||+|+|+|+++++|+|.++|+++...+.
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~-- 89 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITL-- 89 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCH--
T ss_pred CCCeEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCCh--
Confidence 34679999999999643322 699999999999999999999999999999999998888999999998754321
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCC---------
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS--------- 213 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~--------- 213 (382)
..+|+ .+|||||++.+|+ +||++|+... ....++++.++++.++|.+... ++|.+
T Consensus 90 -------~~~rr-~ig~v~Q~~~lf~-~tv~enl~~~------~~~~~~~v~~~l~~~~L~~~~~-~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 90 -------EQWRK-AFGVIPQKVFIFS-GTFRKNLDPN------AAHSDQEIWKVADEVGLRSVIE-QFPGKLDFVLVDGG 153 (390)
T ss_dssp -------HHHHH-TEEEESCCCCCCS-EEHHHHHCTT------CCSCHHHHHHHHHHTTCHHHHT-TSTTGGGCEECTTT
T ss_pred -------HHHhC-CEEEEcCCcccCc-cCHHHHhhhc------cccCHHHHHHHHHHhCCHHHHh-hccccccccccccc
Confidence 12344 8999999999998 7999999421 1223456778899999987665 89988
Q ss_pred --CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 214 --SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 214 --LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||||||||+|||||+.+|++||||| +||+..+..+++.|+++ . .++|+|+||||++. + ..||+|++|
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~---~-~~~tvi~vtHd~e~--~-~~aDri~vl 226 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA---F-ADCTVILCEARIEA--M-LECDQFLVI 226 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT---T-TTSCEEEECSSSGG--G-TTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---h-CCCEEEEEEcCHHH--H-HhCCEEEEE
Confidence 99999999999999999999999999 99999999999999987 2 47999999997543 4 469999999
Q ss_pred hh---cccccccceeeE
Q 016817 289 EY---LGVSEISGVYDI 302 (382)
Q Consensus 289 ~~---~~~~~~~~v~~~ 302 (382)
++ +..+++.++|..
T Consensus 227 ~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 227 EENKVRQYDSILELYHY 243 (390)
T ss_dssp ETTEEEEESSHHHHHHC
T ss_pred ECCEEEEECCHHHHHhC
Confidence 87 445666666643
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=346.71 Aligned_cols=198 Identities=18% Similarity=0.149 Sum_probs=159.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|+++. . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+..
T Consensus 1 ml~~~~l~~~y~~~~-~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~--- 72 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE-Q----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE--- 72 (243)
T ss_dssp CEEEEEEEECSSSSS-C----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCS---
T ss_pred CEEEEEEEEEeCCCC-c----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHH---
Confidence 467899999994222 1 6999999999999999999999999999999999999 899999999977543211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSS 214 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~L 214 (382)
.+| +.+||+||++.+|+ .|+.+|+.+.. ......+++.++++.+++.+.+. ++++.+|
T Consensus 73 ------~~~-~~i~~v~q~~~l~~-~tv~enl~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 73 ------NWR-SQIGFVSQDSAIMA-GTIRENLTYGL----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp ------CCT-TTCCEECCSSCCCC-EEHHHHTTSCT----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred ------HHH-hhEEEEcCCCcccc-ccHHHHHhhhc----cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence 133 37999999999988 59999995421 11112234555666666654432 2456799
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+++.|+++ . .|+|||+||||++. +. .||++++|++
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~---~-~~~tvi~vtH~~~~--~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL---M-KGRTTLVIAHRLST--IV-DADKIYFIEK 212 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH---H-TTSEEEEECCSHHH--HH-HCSEEEEEET
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCChHH--HH-hCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 3 58999999996654 65 5899998876
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=355.65 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=163.1
Q ss_pred CchhHHHHHhhhcccC-CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 64 DGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~-~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.++|+++||+++|+++ ... +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~-- 87 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD-- 87 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSC----CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC--
T ss_pred CceEEEEEEEEEeCCCCCce----eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCC--
Confidence 4589999999999752 122 6999999999999999999999999999999999999 8999999998763211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-c------ccccccccCccc--cccccccccccC
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-H------HNQRCLRSDDCA--LMKNDAEIDDLK 212 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~------~~~~~~~~l~~~--~L~~~~~~~~~~ 212 (382)
...+|+ .|||+||++.+|+ .||.||+.+.... ... . ....+.++++.+ |+..... +++.
T Consensus 88 -------~~~~~~-~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~ 155 (271)
T 2ixe_A 88 -------HHYLHT-QVAAVGQEPLLFG-RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGN 155 (271)
T ss_dssp -------HHHHHH-HEEEECSSCCCCS-SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-GGGT
T ss_pred -------HHHHhc-cEEEEecCCcccc-ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-CCcC
Confidence 112343 7999999999988 6999999653210 010 0 011233445555 6776554 8999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+++.|+++. ++.|+|||+||||++. +.. ||++++|+
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~g~tviivtHd~~~--~~~-~d~v~~l~ 230 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESP--EWASRTVLLITQQLSL--AER-AHHILFLK 230 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT--TTTTSEEEEECSCHHH--HTT-CSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHH--hhcCCEEEEEeCCHHH--HHh-CCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 3458999999997655 664 89999987
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 231 ~ 231 (271)
T 2ixe_A 231 E 231 (271)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-46 Score=349.78 Aligned_cols=199 Identities=17% Similarity=0.128 Sum_probs=160.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..|+++||+++|+++... +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 6 ~~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~--- 78 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP--- 78 (247)
T ss_dssp EEEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH---
T ss_pred CceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH---
Confidence 367899999999422222 5999999999999999999999999999999999999 89999999997653221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKS 213 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~ 213 (382)
..+|+ .+||+||++.+|+ .|+.+|+.+.. .....+++.++++.+++.+.+. ++++.+
T Consensus 79 ------~~~~~-~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~ 145 (247)
T 2ff7_A 79 ------NWLRR-QVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 145 (247)
T ss_dssp ------HHHHH-HEEEECSSCCCTT-SBHHHHHTTTC-----TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTC
T ss_pred ------HHHHh-cEEEEeCCCcccc-ccHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCC
Confidence 12343 7999999999887 69999996431 1112234555666666654332 145689
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ . +|+|||+||||++. +.. ||++++|++
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~---~-~g~tviivtH~~~~--~~~-~d~v~~l~~ 218 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI---C-KGRTVIIIAHRLST--VKN-ADRIIVMEK 218 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH---H-TTSEEEEECSSGGG--GTT-SSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---c-CCCEEEEEeCCHHH--HHh-CCEEEEEEC
Confidence 99999999999999999999999999 99999999999999997 3 48999999997765 654 899999876
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=388.88 Aligned_cols=249 Identities=13% Similarity=0.106 Sum_probs=202.6
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
.++..|+.+++.....+..+..+.+|+.++++.++... ....+.|+++||+|+|+++. ++|+|+||+|
T Consensus 304 ~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-----~~l~~isl~i 378 (598)
T 3qf4_B 304 RQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK-----PVLKDITFHI 378 (598)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSS-----CSCCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCC-----ccccceEEEE
Confidence 46778999999999999999999999999988765311 11235699999999996533 2699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+ ...+|+ ++|||+|++.+|+ .|++|
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~---------~~~~r~-~i~~v~Q~~~lf~-~tv~e 447 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK---------RSSLRS-SIGIVLQDTILFS-TTVKE 447 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC---------HHHHHH-HEEEECTTCCCCS-SBHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC---------HHHHHh-ceEEEeCCCcccc-ccHHH
Confidence 9999999999999999999999999999 8999999999875332 123555 8999999999997 69999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+.+. .....++++.++++.+++.+.+. +.| .+|||||||||+|||||+++|++||||| +
T Consensus 448 ni~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~ 521 (598)
T 3qf4_B 448 NLKYG-----NPGATDEEIKEAAKLTHSDHFIK-HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521 (598)
T ss_dssp HHHSS-----STTCCTTHHHHHTTTTTCHHHHH-TSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTT
T ss_pred HHhcC-----CCCCCHHHHHHHHHHhCCHHHHH-hccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 99532 22234456677788887765544 444 6899999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.++..+.+.|+++. +|+|+|+|||+++. +.. ||+|++|++ +..+++++++
T Consensus 522 LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~--~~~-~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 522 VDTKTEKSIQAAMWKLM----EGKTSIIIAHRLNT--IKN-ADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp CCHHHHHHHHHHHHHHH----TTSEEEEESCCTTH--HHH-CSEEEEECSSSEEECSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEEEecCHHH--HHc-CCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999972 58999999995554 765 899999976 4555554444
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=385.17 Aligned_cols=251 Identities=15% Similarity=0.148 Sum_probs=201.9
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++..|+.+++.....+..+..+.+|+.++++.++... ....++|+++||+|+|+++..+ +|+|+||+|+
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~i~l~i~ 367 (582)
T 3b5x_A 292 FGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKP----ALSHVSFSIP 367 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCcc----ccccceEEEC
Confidence 46788999999999999999999999999988764311 1123579999999999753222 6999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+ ...+|+ ++|||+|++.+|+ .|++||
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~---------~~~~~~-~i~~v~Q~~~l~~-~tv~en 436 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK---------LTNLRR-HFALVSQNVHLFN-DTIANN 436 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC---------HHHHhc-CeEEEcCCCcccc-ccHHHH
Confidence 999999999999999999999999999 8999999999765322 122454 8999999999998 599999
Q ss_pred HHHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.+.. .....++++.++++.+++.+.+. +. ..+||||||||++|||||+++|++||||| +|
T Consensus 437 i~~~~----~~~~~~~~~~~~~~~~~l~~~~~-~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~L 511 (582)
T 3b5x_A 437 IAYAA----EGEYTREQIEQAARQAHAMEFIE-NMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511 (582)
T ss_pred HhccC----CCCCCHHHHHHHHHHCCCHHHHH-hCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 96531 01223455677788888765543 43 47899999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+.++..+.+.|+++ . +|+|+|+||||++. +. .||++++|++ +..+++++++
T Consensus 512 D~~~~~~i~~~l~~~---~-~~~tvi~itH~~~~--~~-~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 512 DTESERAIQAALDEL---Q-KNKTVLVIAHRLST--IE-QADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred CHHHHHHHHHHHHHH---c-CCCEEEEEecCHHH--HH-hCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999997 3 48999999996554 65 6899999876 3444444443
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-46 Score=388.41 Aligned_cols=251 Identities=16% Similarity=0.112 Sum_probs=199.2
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh--------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
.++.+|+.+++.....+..+..+.+|+.++++.++... ....+.++++||+|+|+++..+ +|+|+||+
T Consensus 288 ~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~isl~ 363 (578)
T 4a82_A 288 ELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAP----ILKDINLS 363 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCC----SEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCc----ceeeeEEE
Confidence 45788999999999999999999999999998765311 1123579999999999764432 69999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.+.+ ...+|+ ++|||+|++.+|+ .|++
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~---------~~~~r~-~i~~v~Q~~~l~~-~tv~ 432 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL---------TGSLRN-QIGLVQQDNILFS-DTVK 432 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC---------HHHHHH-TEEEECSSCCCCS-SBHH
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC---------HHHHhh-heEEEeCCCccCc-ccHH
Confidence 99999999999999999999999999999 8999999999775332 122554 8999999999998 5999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||+.+. .....++++.++++.+++.+.+. ++...+|||||||||+|||||+++|++||||| +
T Consensus 433 eni~~~-----~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~ 507 (578)
T 4a82_A 433 ENILLG-----RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507 (578)
T ss_dssp HHHGGG-----CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHhcC-----CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 999532 22223344555555555543322 14456899999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.++..+.+.++++. +++|+|+||||++. +.. ||+|++|++ +..+++++++
T Consensus 508 LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~--~~~-~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 508 LDLESESIIQEALDVLS----KDRTTLIVAHRLST--ITH-ADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp CCHHHHHHHHHHHHHHT----TTSEEEEECSSGGG--TTT-CSEEEEEETTEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEEEecCHHH--HHc-CCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999872 47899999996655 764 899999877 4455554444
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=347.34 Aligned_cols=194 Identities=16% Similarity=0.090 Sum_probs=164.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++ + |+|.++|+++....
T Consensus 4 ~l~~~~l~~~----~------vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~----- 67 (249)
T 2qi9_C 4 VMQLQDVAES----T------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS----- 67 (249)
T ss_dssp EEEEEEEEET----T------TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC-----
T ss_pred EEEEEceEEE----E------EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC-----
Confidence 6788899876 2 6999999999999999999999999999999999999 8 99999998653211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+|+ .+||+||++.+|+.+|+.||+.+... ... ..+++.++++.+|+.+... +++.+|||||||||+|
T Consensus 68 ----~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~~~~---~~~-~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~l 137 (249)
T 2qi9_C 68 ----ATKLAL-HRAYLSQQQTPPFATPVWHYLTLHQH---DKT-RTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRL 137 (249)
T ss_dssp ----HHHHHH-HEEEECSCCCCCTTCBHHHHHHTTCS---STT-CHHHHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHH
T ss_pred ----HHHHhc-eEEEECCCCccCCCCcHHHHHHHhhc---cCC-cHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHH
Confidence 112343 79999999999988999999964311 111 2456778899999987655 9999999999999999
Q ss_pred eeeehhHHH-------HHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAE-------IYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~-------iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|+ +||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..+||++++|++
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tviivtHd~~~--~~~~~d~v~~l~~ 208 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL---SQQGLAIVMSSHDLNH--TLRHAHRAWLLKG 208 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECSCHHH--HHHHCSEEEEEET
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999 999999 99999999999999998 3348999999996665 8889999999976
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=384.74 Aligned_cols=251 Identities=15% Similarity=0.124 Sum_probs=200.9
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++.+|+.+++.....+..+..+.+|+.++++.++... ....++|+++||+|+|+++..+ +|+|+||+|+
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~v~~~i~ 367 (582)
T 3b60_A 292 IALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVP----ALRNINLKIP 367 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCC----SEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCc----cccceeEEEc
Confidence 46778999999999999999999999999998765311 1123579999999999743222 6999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+. ..+|+ ++|||+|++.+|+ .|++||
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~---------~~~~~-~i~~v~Q~~~l~~-~tv~en 436 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL---------ASLRN-QVALVSQNVHLFN-DTVANN 436 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH---------HHHHH-TEEEECSSCCCCS-SBHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH---------HHHHh-hCeEEccCCcCCC-CCHHHH
Confidence 999999999999999999999999999 89999999998754321 22454 8999999999998 599999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
+.+.. .....++++.++++.+++.+.+. ++.+.+||||||||++|||||+++|++||||| +||
T Consensus 437 i~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD 512 (582)
T 3b60_A 437 IAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_dssp HHTTT----TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCC
T ss_pred HhccC----CCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 96431 01223455677777777765433 13457899999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
+.++..+.+.|+++ . +|+|+|+||||++. +. .||++++|++ +..++++++
T Consensus 513 ~~~~~~i~~~l~~~---~-~~~tvi~itH~~~~--~~-~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 513 TESERAIQAALDEL---Q-KNRTSLVIAHRLST--IE-QADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHHH---H-TTSEEEEECSCGGG--TT-TCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHH---h-CCCEEEEEeccHHH--HH-hCCEEEEEECCEEEEecCHHHH
Confidence 99999999999998 2 48999999996654 65 5899998876 334444443
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=345.57 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=162.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.+
T Consensus 4 ~l~i~~l~~~y~~~-~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------- 64 (253)
T ss_dssp EEEEEEEEEEETTT-TE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE--------------
T ss_pred eEEEeeEEEEeCCC-Ce----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--------------
Confidence 68999999999622 22 5999999999999999999999999999999999999 8999971
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-h----cCccccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-S----EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
+ +.+||+||++.+++.+||.+|+.+..... + ......+++.++++.+|+.+..+ +++.+||||||
T Consensus 65 --------~-~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~ 134 (253)
T 2nq2_C 65 --------Y-QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-REFTSLSGGQR 134 (253)
T ss_dssp --------C-SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHH
T ss_pred --------e-ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-CChhhCCHHHH
Confidence 1 37999999999998899999997643211 0 01112345678899999987655 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +.++||+++++++
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~~g~tvi~vtHd~~~--~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA--QSQNMTVVFTTHQPNQ--VVAIANKTLLLNK 204 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH--HTSCCEEEEEESCHHH--HHHHCSEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEeC
Confidence 99999999999999999999 999999999999999983 3348999999996655 8889999999876
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=384.10 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=197.0
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh--------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
++..|+..++.....++++..+.+|+.++++.++.. .+...+.|+++||+|+|+++..+ +|+|+||+|
T Consensus 291 ~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~isl~i 366 (587)
T 3qf4_A 291 QIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDP----VLSGVNFSV 366 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCC----SEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCc----ceeceEEEE
Confidence 456889999999999999999999999999876431 11224579999999999754433 699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||++||+||||||||||+++|+|+++ ++|+|.+||+++.+.+ ...+|+ ++|||+|++.+|+ .|++|
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~---------~~~~r~-~i~~v~Q~~~lf~-~tv~e 435 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK---------LKDLRG-HISAVPQETVLFS-GTIKE 435 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC---------HHHHHH-HEEEECSSCCCCS-EEHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC---------HHHHHh-heEEECCCCcCcC-ccHHH
Confidence 9999999999999999999999999999 8999999999775332 123555 8999999999997 59999
Q ss_pred hHHHHHhhhhcCccccccccccCccc-----------cccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCA-----------LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+.+. .....++++.++++.+ |++.... +++.+||||||||++|||||+++|++||||| +
T Consensus 436 ni~~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~ 509 (587)
T 3qf4_A 436 NLKWG-----REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509 (587)
T ss_dssp HHTTT-----CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTT
T ss_pred HHhcc-----CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 99532 1222223333333333 4443333 6788999999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.++..+++.|+++. +|+|+|+||||++. +. .||+|++|++ +..+++++++
T Consensus 510 LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~--~~-~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 510 VDPITEKRILDGLKRYT----KGCTTFIITQKIPT--AL-LADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp SCHHHHHHHHHHHHHHS----TTCEEEEEESCHHH--HT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----CCCEEEEEecChHH--HH-hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999872 58999999995544 65 7899999977 4455554444
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-45 Score=344.93 Aligned_cols=201 Identities=16% Similarity=0.127 Sum_probs=159.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCccccee
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~ 143 (382)
..+|+++||+++|+++... ++|+|+||+|++|++++|+||||||||||+|+|+|+++++|+|.++|+++....
T Consensus 15 ~~~l~i~~l~~~y~~~~~~---~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~---- 87 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNH---RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYN---- 87 (260)
T ss_dssp CCCEEEEEEEECCTTCCSS---CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBC----
T ss_pred CCeEEEEEEEEEeCCCCcC---ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcC----
Confidence 3579999999999653211 169999999999999999999999999999999999987899999998753211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccc----------cccccCC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA----------EIDDLKS 213 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~ 213 (382)
...+|+ .+||+||++.+|+ .|+++|+.+.. .....+++.++++.+++.+.+ .++++.+
T Consensus 88 -----~~~~~~-~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~ 155 (260)
T 2ghi_A 88 -----RNSIRS-IIGIVPQDTILFN-ETIKYNILYGK-----LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK 155 (260)
T ss_dssp -----HHHHHT-TEEEECSSCCCCS-EEHHHHHHTTC-----TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBC
T ss_pred -----HHHHhc-cEEEEcCCCcccc-cCHHHHHhccC-----CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCc
Confidence 112444 8999999999987 69999996421 111223344555555554321 1257889
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ . +|+|||+||||++. +. .||++++|++
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l---~-~~~tviivtH~~~~--~~-~~d~i~~l~~ 228 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL---R-KNRTLIIIAHRLST--IS-SAESIILLNK 228 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH---T-TTSEEEEECSSGGG--ST-TCSEEEEEET
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh---c-CCCEEEEEcCCHHH--HH-hCCEEEEEEC
Confidence 99999999999999999999999999 99999999999999998 3 37999999997765 65 4899998876
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=339.15 Aligned_cols=205 Identities=11% Similarity=0.055 Sum_probs=167.5
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~ 143 (382)
+++++|++++|+++ ... +|+++||+|+ |++++|+||||||||||+|+|+|+++++|+|.++|+++...
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~----- 70 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI----- 70 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGC-----
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcch-----
Confidence 46789999999642 122 5999999999 99999999999999999999999995599999999865311
Q ss_pred ehhhhhhhHhhhccc-eeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccc-ccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSG-FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK-NDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSGGqkQR 221 (382)
. .| +.+| |+||++.+ .+|+.+|+.+..... ....+++.++++.+++. +... +++.+||||||||
T Consensus 71 ------~-~~-~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGqkqR 136 (263)
T 2pjz_A 71 ------R-NY-IRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLDRDLFLEMLKALKLGEEILR-RKLYKLSAGQSVL 136 (263)
T ss_dssp ------S-CC-TTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCCHHHHHHHHHHTTCCGGGGG-SBGGGSCHHHHHH
T ss_pred ------H-Hh-hheEEEeCCCCcc--CCcHHHHHHHhhhhc---chHHHHHHHHHHHcCCChhHhc-CChhhCCHHHHHH
Confidence 1 12 3799 99999887 689999997653211 12234577889999998 6655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhh-hhhhhhh---cccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDA-RLKICEY---LGVS 294 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d-~v~ll~~---~~~~ 294 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++ . . |||+||||++. +..+|| ++++|++ +..+
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~---~--~-tviivtHd~~~--~~~~~d~~i~~l~~G~i~~~g 208 (263)
T 2pjz_A 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---G--K-EGILVTHELDM--LNLYKEYKAYFLVGNRLQGPI 208 (263)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHS---C--S-EEEEEESCGGG--GGGCTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHh---c--C-cEEEEEcCHHH--HHHhcCceEEEEECCEEEEec
Confidence 999999999999999999 99999999999999997 2 2 99999997666 888999 9999976 4445
Q ss_pred cccceeeE
Q 016817 295 EISGVYDI 302 (382)
Q Consensus 295 ~~~~v~~~ 302 (382)
++++++..
T Consensus 209 ~~~~l~~~ 216 (263)
T 2pjz_A 209 SVSELLES 216 (263)
T ss_dssp EHHHHHTE
T ss_pred CHHHHHhh
Confidence 55555543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=402.00 Aligned_cols=254 Identities=12% Similarity=0.059 Sum_probs=206.1
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhh--------hhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL--------ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
..+..|+..+......+.....+.+|+.++++.++. +..+..+.|+++||+|+|+.+... +||+|+||+
T Consensus 1025 ~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~---~VL~~isl~ 1101 (1321)
T 4f4c_A 1025 TISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEI---EILKGLSFS 1101 (1321)
T ss_dssp HTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSS---CSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCC---ccccceeEE
Confidence 345678888888888888888889999999887653 111224579999999999754321 269999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||.+|||||||||||||+++|.|+++ ++|+|.+||.|+.+.+. ..+|+ +|++|+|+|.||+ .|++
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~---------~~lR~-~i~~V~Qdp~LF~-gTIr 1170 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP---------EHTRS-QIAIVSQEPTLFD-CSIA 1170 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCH---------HHHHT-TEEEECSSCCCCS-EEHH
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCH---------HHHHh-heEEECCCCEeeC-ccHH
Confidence 99999999999999999999999999999 89999999999876542 23676 8999999999998 7999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
+||.+.. ......++++.++++.+++.+++. ..| .+||||||||++|||||+++|+||||||
T Consensus 1171 eNI~~gl---d~~~~sd~ei~~Al~~a~l~~~I~-~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTS 1246 (1321)
T 4f4c_A 1171 ENIIYGL---DPSSVTMAQVEEAARLANIHNFIA-ELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246 (1321)
T ss_dssp HHHSSSS---CTTTSCHHHHHHHHHHTTCHHHHH-TSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred HHHhccC---CCCCCCHHHHHHHHHHhCChHHHH-cCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccc
Confidence 9995321 012334567888888888876544 333 3499999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
+||+++...|++.|+++. +|+|+|+||| +++++.. ||+|++|++ ++.|++++.+.
T Consensus 1247 aLD~~tE~~Iq~~l~~~~----~~~TvI~IAH--RLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1247 ALDTESEKVVQEALDRAR----EGRTCIVIAH--RLNTVMN-ADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp STTSHHHHHHHHHHTTTS----SSSEEEEECS--SSSTTTT-CSEEEEESSSSEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHc----CCCEEEEecc--CHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999973 6899999999 7877875 777888876 66777766663
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-43 Score=326.66 Aligned_cols=189 Identities=14% Similarity=0.071 Sum_probs=146.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|+.+..+ +|+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------ 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------ 66 (237)
T ss_dssp CEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------
T ss_pred eEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------
Confidence 57899999999642222 6999999999999999999999999999999999999 899999987
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCc---ccccc-----ccccccccCCCcc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDD---CALMK-----NDAEIDDLKSSPK 216 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~---~~~L~-----~~~~~~~~~~LSG 216 (382)
.+||+||++.++ ..|+.+|+.+... . .....+++.++++ .+++. ..+ ++++.+|||
T Consensus 67 -----------~i~~v~Q~~~~~-~~tv~enl~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSg 130 (237)
T 2cbz_A 67 -----------SVAYVPQQAWIQ-NDSLRENILFGCQ-L--EEPYYRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSG 130 (237)
T ss_dssp -----------CEEEECSSCCCC-SEEHHHHHHTTSC-C--CTTHHHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCH
T ss_pred -----------EEEEEcCCCcCC-CcCHHHHhhCccc-c--CHHHHHHHHHHHhhHHHHHhccccccccc-cCCCCCCCH
Confidence 379999998765 5899999964321 0 1111111112222 22221 123 378999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+++.|.+.. ...+|+|||+||||++. +. .||++++|++
T Consensus 131 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~~~~tviivtH~~~~--~~-~~d~v~~l~~ 203 (237)
T 2cbz_A 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPK-GMLKNKTRILVTHSMSY--LP-QVDVIIVMSG 203 (237)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTT-STTTTSEEEEECSCSTT--GG-GSSEEEEEET
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHH-hhcCCCEEEEEecChHH--HH-hCCEEEEEeC
Confidence 99999999999999999999999 999999999999995320 01248999999997766 65 5899988876
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=326.61 Aligned_cols=186 Identities=13% Similarity=0.054 Sum_probs=147.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+|+++|++++|+.+..+ +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|
T Consensus 4 ~~~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------- 69 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69 (229)
T ss_dssp CEEEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----------
T ss_pred cceEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----------
Confidence 3578999999999643322 6999999999999999999999999999999999999 899999987
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccc----------cccccC
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA----------EIDDLK 212 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 212 (382)
.+||++|++.+|+ .|++||+.+... . ......++++.+++.+.+ .++++.
T Consensus 70 -------------~i~~v~q~~~~~~-~tv~enl~~~~~-----~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (229)
T 2pze_A 70 -------------RISFCSQFSWIMP-GTIKENIIFGVS-----Y-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129 (229)
T ss_dssp -------------CEEEECSSCCCCS-BCHHHHHHTTSC-----C-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCT
T ss_pred -------------EEEEEecCCcccC-CCHHHHhhccCC-----c-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCC
Confidence 3789999999988 499999964310 0 001111222222222111 124568
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhh-ccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRL-FSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~-l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+++. ++++ . .|+|||+||||++. +. .||++++|
T Consensus 130 ~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~-~~~tvi~vtH~~~~--~~-~~d~v~~l 202 (229)
T 2pze_A 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---M-ANKTRILVTSKMEH--LK-KADKILIL 202 (229)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC---T-TTSEEEEECCCHHH--HH-HCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh---h-CCCEEEEEcCChHH--HH-hCCEEEEE
Confidence 999999999999999999999999999 9999999999996 5665 2 47899999997654 65 48999888
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 203 ~~ 204 (229)
T 2pze_A 203 HE 204 (229)
T ss_dssp ET
T ss_pred EC
Confidence 76
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-43 Score=395.38 Aligned_cols=249 Identities=12% Similarity=0.098 Sum_probs=204.0
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhh---------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl 93 (382)
..+..|+..++.....+..+.++.+|+.++++.++.. .....+.|+++||+|+|+..... ++|+|+||
T Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~---~vL~~isl 439 (1321)
T 4f4c_A 363 MMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDV---PILRGMNL 439 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTS---CSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCC---ceeeceEE
Confidence 4567899999999999999999999999999876531 01123479999999999754211 26999999
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRV 172 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv 172 (382)
+|++|+.+|||||||||||||+++|.|+++ ++|+|.+||+++++.+. ..+|+ +||||+|++.+|+ .|+
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~---------~~lr~-~i~~v~Q~~~Lf~-~TI 508 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL---------EFLRK-NVAVVSQEPALFN-CTI 508 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCH---------HHHHH-HEEEECSSCCCCS-EEH
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccH---------HHHhh-cccccCCcceeeC-Cch
Confidence 999999999999999999999999999999 89999999999876543 22665 8999999999998 799
Q ss_pred hhhHHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh--
Q 016817 173 HEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 173 ~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
+|||.++ .....++++.++++.+++.+++. +.|. .||||||||++||||++++|+||||||
T Consensus 509 ~eNI~~g-----~~~~~~~~v~~a~~~a~l~~~i~-~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t 582 (1321)
T 4f4c_A 509 EENISLG-----KEGITREEMVAACKMANAEKFIK-TLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582 (1321)
T ss_dssp HHHHHTT-----CTTCCHHHHHHHHHHTTCHHHHH-HSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred hHHHhhh-----cccchHHHHHHHHHHccchhHHH-cCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence 9999543 33345677888888888776554 4443 499999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
+||++++..+.+.|.++. +|+|+|+||| +++++. .||+|++|++ +..|+.++
T Consensus 583 SaLD~~te~~i~~~l~~~~----~~~T~iiiaH--rls~i~-~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 583 SALDAESEGIVQQALDKAA----KGRTTIIIAH--RLSTIR-NADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp TTSCTTTHHHHHHHHHHHH----TTSEEEEECS--CTTTTT-TCSEEEEEETTEEEEEECHHH
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEEcc--cHHHHH-hCCEEEEeeCCeeeccCCHHH
Confidence 999999999999999874 6899999999 665576 5777887776 44444333
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=323.45 Aligned_cols=203 Identities=14% Similarity=0.060 Sum_probs=141.6
Q ss_pred ccccch-hHHHHHHhhhhh-----hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHH
Q 016817 42 VSTLTP-RLRVLREMERLA-----LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLV 115 (382)
Q Consensus 42 ~~~~~~-~~~~~~~~~~~~-----~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl 115 (382)
+..+.. ++.++++.+... .....++++++|+++.+ .. +|+++||+|++|++++|+||||||||||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~------vl~~isl~i~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 10 VTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG--TP------VLKDINFKIERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp EEECSSHHHHHHHHHCC-----------------------C--CC------SEEEEEEEECTTCEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHHHHhcccccccccccccCCCceEEEEEEEEcC--ce------EEEeeEEEEcCCCEEEEECCCCCcHHHHH
Confidence 334444 777776655421 12234579999999864 22 69999999999999999999999999999
Q ss_pred HHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcccccccc
Q 016817 116 NLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCL 194 (382)
Q Consensus 116 ~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~ 194 (382)
|+|+|+++ ++|+|.++| .+||+||++.+|+ .|+++|+. .. .. ......
T Consensus 82 k~l~Gl~~p~~G~I~~~g-----------------------~i~~v~Q~~~l~~-~tv~enl~-~~-~~-----~~~~~~ 130 (290)
T 2bbs_A 82 MMIMGELEPSEGKIKHSG-----------------------RISFCSQNSWIMP-GTIKENII-GV-SY-----DEYRYR 130 (290)
T ss_dssp HHHTTSSCEEEEEEECCS-----------------------CEEEECSSCCCCS-SBHHHHHH-TT-CC-----CHHHHH
T ss_pred HHHhcCCCCCCcEEEECC-----------------------EEEEEeCCCccCc-ccHHHHhh-Cc-cc-----chHHHH
Confidence 99999999 899999986 4799999999888 59999996 21 10 011112
Q ss_pred ccCccccccccc----------cccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhh-ccCccccc
Q 016817 195 RSDDCALMKNDA----------EIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRL-FSAPGLRK 260 (382)
Q Consensus 195 ~~l~~~~L~~~~----------~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~-l~~l~~~~ 260 (382)
++++.+++.+.+ .++++.+|||||||||+|||||+.+|++||||| +||+.++..+++. ++++ .
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~---~ 207 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---M 207 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC---T
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh---h
Confidence 223333332211 114468999999999999999999999999999 9999999999996 4565 2
Q ss_pred cCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 261 CNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 261 ~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.|+|||+||||++. +. .||++++|++
T Consensus 208 -~~~tviivtHd~~~--~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 208 -ANKTRILVTSKMEH--LK-KADKILILHE 233 (290)
T ss_dssp -TTSEEEEECCCHHH--HH-HSSEEEEEET
T ss_pred -CCCEEEEEecCHHH--HH-cCCEEEEEEC
Confidence 48999999997654 65 5899988876
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=381.51 Aligned_cols=250 Identities=14% Similarity=0.056 Sum_probs=193.1
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh---------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL---------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
....|+.++......+..+..+.+|+.++++.++... ....+.|+++||+|+|+++... ++|+|+||+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~---~vL~~isl~ 412 (1284)
T 3g5u_A 336 IGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV---QILKGLNLK 412 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSC---CSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCC---cceecceEE
Confidence 3456788888888888888889999999887654210 1123579999999999754211 269999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||++||+||||||||||+++|+|+++ ++|+|.+||+++.+.+ ...+|+ +||||+|++.+|+ .|++
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~---------~~~~r~-~i~~v~Q~~~l~~-~ti~ 481 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN---------VRYLRE-IIGVVSQEPVLFA-TTIA 481 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC---------HHHHHH-HEEEECSSCCCCS-SCHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC---------HHHHHh-heEEEcCCCccCC-ccHH
Confidence 99999999999999999999999999999 8999999999875432 223565 8999999999998 5999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||+.+.. ....++++.++++.+++.+++. .....+|||||||||+|||||+.+|+|||||| +
T Consensus 482 eNi~~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~ 556 (1284)
T 3g5u_A 482 ENIRYGR-----EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556 (1284)
T ss_dssp HHHHHHC-----SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCS
T ss_pred HHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 9996542 2222334444444444332211 14556899999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
||+.++..+.+.++++. +|+|+|+||| +++++.. ||+|++|++ +..++.+++
T Consensus 557 LD~~~~~~i~~~l~~~~----~~~t~i~itH--~l~~i~~-~d~i~vl~~G~i~~~g~~~~l 611 (1284)
T 3g5u_A 557 LDTESEAVVQAALDKAR----EGRTTIVIAH--RLSTVRN-ADVIAGFDGGVIVEQGNHDEL 611 (1284)
T ss_dssp SCHHHHHHHHHHHHHHH----TTSEEEEECS--CHHHHTT-CSEEEECSSSCCCCEECHHHH
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEEEec--CHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence 99999999999998762 5899999999 5555765 889998887 445554444
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=373.55 Aligned_cols=252 Identities=13% Similarity=0.113 Sum_probs=194.0
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhhhh---------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL---------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
...|+..+..+...+..+..+.+|+.++++.++... ....+.|+++||+|+|+++... ++|+|+||+|
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~---~~l~~vsl~i 1056 (1284)
T 3g5u_A 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSI---PVLQGLSLEV 1056 (1284)
T ss_dssp HHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGC---CSBSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCC---eeecceeEEE
Confidence 345777778888888888889999999888754311 1123569999999999753211 2699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||++||+||||||||||+++|+|+++ ++|+|.+||+++...+. ..+|+ ++|||||++.+|+ .|++|
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~---------~~~r~-~i~~v~Q~~~l~~-~ti~e 1125 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV---------QWLRA-QLGIVSQEPILFD-CSIAE 1125 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCH---------HHHTT-SCEEEESSCCCCS-SBHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCH---------HHHHh-ceEEECCCCcccc-ccHHH
Confidence 9999999999999999999999999999 89999999998764321 22555 8999999999887 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+..... .....++.+.++++.+++.+.+. .....+|||||||||+|||||+++|+|||||| +|
T Consensus 1126 Ni~~~~~---~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~l 1202 (1284)
T 3g5u_A 1126 NIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202 (1284)
T ss_dssp HHTCCCS---SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSC
T ss_pred HHhccCC---CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9953210 11122334455555555544332 02345799999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+.++..+.+.|++. . .|+|+|+||||++. +.. ||+|++|++ +..+++++++
T Consensus 1203 D~~~~~~i~~~l~~~---~-~~~tvi~isH~l~~--i~~-~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1203 DTESEKVVQEALDKA---R-EGRTCIVIAHRLST--IQN-ADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp CHHHHHHHHHHHHHH---S-SSSCEEEECSCTTG--GGS-CSEEEEEETBEEEEEECHHHHH
T ss_pred CHHHHHHHHHHHHHh---C-CCCEEEEEecCHHH--HHc-CCEEEEEECCEEEEECCHHHHH
Confidence 999999999999886 2 58999999996554 764 899999987 4555555544
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=330.99 Aligned_cols=191 Identities=10% Similarity=0.028 Sum_probs=162.1
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
...++++|+++.|++- .|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.+++.
T Consensus 267 ~~~l~~~~l~~~~~~~-------~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------- 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-------QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ--------- 330 (538)
T ss_dssp CEEEEECCEEEEETTE-------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---------
T ss_pred cceEEEcceEEEECCE-------EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---------
Confidence 4578889999999542 3888899999999999999999999999999999999 8999997653
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.++|++|+.......||.+|+...... ........+.++++.+++.+..+ ++|.+|||||||||
T Consensus 331 -------------~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRv 394 (538)
T 3ozx_A 331 -------------ILSYKPQRIFPNYDGTVQQYLENASKD--ALSTSSWFFEEVTKRLNLHRLLE-SNVNDLSGGELQKL 394 (538)
T ss_dssp -------------CEEEECSSCCCCCSSBHHHHHHHHCSS--TTCTTSHHHHHTTTTTTGGGCTT-SBGGGCCHHHHHHH
T ss_pred -------------eeEeechhcccccCCCHHHHHHHhhhh--ccchhHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHH
Confidence 688999987665678999998653211 11122345678899999987654 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||+|++|++
T Consensus 395 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~--~~~g~tvi~vsHdl~~--~~~~aDri~vl~~ 461 (538)
T 3ozx_A 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT--RERKAVTFIIDHDLSI--HDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HHTTCEEEEECSCHHH--HHHHCSEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 99999999999999999 999999999999999983 4568999999997666 9999999999986
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=326.23 Aligned_cols=189 Identities=18% Similarity=0.112 Sum_probs=160.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|+++.|++- .|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~~-------~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~----------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-------RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD----------- 346 (538)
T ss_dssp CEEEEECCEEEEETTE-------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-----------
T ss_pred CeEEEEeeEEEEECCE-------EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-----------
Confidence 4578999999999532 3899999999999999999999999999999999999 89999861
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+||++|++..++.+||.+++...... .....+.+.++++.+++.+.. ++++.+|||||||||
T Consensus 347 ------------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv 410 (538)
T 1yqt_A 347 ------------LTVAYKPQYIKADYEGTVYELLSKIDAS---KLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRV 410 (538)
T ss_dssp ------------CCEEEECSSCCCCCSSBHHHHHHHHHHH---HHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHH
T ss_pred ------------ceEEEEecCCcCCCCCcHHHHHHhhhcc---CCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHH
Confidence 2689999998776778998877543111 111234567899999998655 499999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +..+||++++|++
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~--~~~g~tvi~vsHd~~~--~~~~~drv~vl~~ 477 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM--EKNEKTALVVEHDVLM--IDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HHHTCEEEEECSCHHH--HHHHCSEEEEEEE
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 99999999999999999 999999999999999983 3468999999997666 9999999999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=329.91 Aligned_cols=189 Identities=20% Similarity=0.120 Sum_probs=161.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|+++.|++- .|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~~-------~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----------- 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-------KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------- 416 (607)
T ss_dssp CEEEEECCEEEECSSC-------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-----------
T ss_pred ceEEEEeceEEEecce-------EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-----------
Confidence 3578999999999542 3899999999999999999999999999999999999 89999861
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+||+||++.+++.+||.+++....... ....+.+.++++.+++.+.. ++++.+|||||||||
T Consensus 417 ------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~QRv 480 (607)
T 3bk7_A 417 ------------LTVAYKPQYIKAEYEGTVYELLSKIDSSK---LNSNFYKTELLKPLGIIDLY-DRNVEDLSGGELQRV 480 (607)
T ss_dssp ------------CCEEEECSSCCCCCSSBHHHHHHHHHHHH---HHCHHHHHHTHHHHTCTTTT-TSBGGGCCHHHHHHH
T ss_pred ------------eEEEEEecCccCCCCCcHHHHHHhhhccC---CCHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHH
Confidence 26999999987777789988875431110 11234567889999998655 499999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+++|++||||| +||+.++..+.++|+++. ++.|.|||+||||++. +..+||++++|++
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tvi~vsHd~~~--~~~~adrv~vl~~ 547 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM--EKNEKTALVVEHDVLM--IDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HHTTCEEEEECSCHHH--HHHHCSEEEEEEE
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEcC
Confidence 99999999999999999 999999999999999983 4468999999997666 8999999999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=319.67 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=150.4
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cccee---------eeEeecCCCcc
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV---------LFAQTSSGNSS 139 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I---------~i~G~~i~~~~ 139 (382)
+|++++|+... . +|+++| +|++||++||+||||||||||+|+|+|+++ ++|++ .++|.++.
T Consensus 95 ~~ls~~yg~~~-~----~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~--- 165 (607)
T 3bk7_A 95 EDCVHRYGVNA-F----VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ--- 165 (607)
T ss_dssp GSEEEECSTTC-C----EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHH---
T ss_pred CCeEEEECCCC-e----eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehh---
Confidence 89999996432 1 599999 999999999999999999999999999998 89996 34443211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCCh---hhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNY---NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
.. ..... .+...+++++|....++. .|+.+|+.. ....+++.++++.+||.+.. ++++.+|||
T Consensus 166 ---~~-~~~~~-~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~--------~~~~~~~~~~L~~lgL~~~~-~~~~~~LSG 231 (607)
T 3bk7_A 166 ---NY-FERLK-NGEIRPVVKPQYVDLLPKAVKGKVRELLKK--------VDEVGKFEEVVKELELENVL-DRELHQLSG 231 (607)
T ss_dssp ---HH-HHHHH-HTSCCCEEECSCGGGGGGTCCSBHHHHHHH--------TCCSSCHHHHHHHTTCTTGG-GSBGGGCCH
T ss_pred ---hh-hhhhh-hhhcceEEeechhhhchhhccccHHHHhhh--------hHHHHHHHHHHHHcCCCchh-CCChhhCCH
Confidence 00 00100 111257788886433221 377777742 12235677889999998765 499999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.++|+++. +.|.|||+||||++. +..+||+|++|++
T Consensus 232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~---~~g~tvIivsHdl~~--~~~~adri~vl~~ 303 (607)
T 3bk7_A 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA---NEGKAVLVVEHDLAV--LDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH---HTTCEEEEECSCHHH--HHHHCSEEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH---hcCCEEEEEecChHH--HHhhCCEEEEECC
Confidence 99999999999999999999999 999999999999999983 359999999997665 8889999988865
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=314.53 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=150.3
Q ss_pred hHH-HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cccee---------eeEeecC
Q 016817 67 NEL-RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV---------LFAQTSS 135 (382)
Q Consensus 67 i~i-~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I---------~i~G~~i 135 (382)
.++ +||+|+|++.. . +|+++| +|++||++||+||||||||||+|+|+|+++ ++|++ .++|.++
T Consensus 21 ~~~~~~ls~~yg~~~-~----~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~ 94 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA-F----VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94 (538)
T ss_dssp ---CCCEEEECSTTC-C----EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTH
T ss_pred hhHhcCcEEEECCcc-c----cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccH
Confidence 455 58999996431 1 599999 999999999999999999999999999998 89996 3444321
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCCh---hhhhhhHHHHHhhhhcCccccccccccCccccccccccccccC
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY---NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
.. ...... .+...+++++|...+++. .++.+++.. ....+++.++++.+|+.+..+ +++.
T Consensus 95 ~~-------~~~~~~-~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~--------~~~~~~~~~~l~~lgl~~~~~-~~~~ 157 (538)
T 1yqt_A 95 QN-------YFEKLK-NGEIRPVVKPQYVDLIPKAVKGKVIELLKK--------ADETGKLEEVVKALELENVLE-REIQ 157 (538)
T ss_dssp HH-------HHHHHH-TTSCCCEEECSCGGGSGGGCCSBHHHHHHH--------HCSSSCHHHHHHHTTCTTTTT-SBGG
T ss_pred HH-------HHHHHH-HHhhhhhhhhhhhhhcchhhhccHHHHHhh--------hhHHHHHHHHHHHcCCChhhh-CChh
Confidence 10 000000 111257888887554442 266666631 112356778899999986654 9999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. +.|+|||+||||++. +..+||+|++|+
T Consensus 158 ~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~---~~g~tvi~vsHd~~~--~~~~~dri~vl~ 232 (538)
T 1yqt_A 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS---EEGKSVLVVEHDLAV--LDYLSDIIHVVY 232 (538)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---HTTCEEEEECSCHHH--HHHHCSEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH--HHHhCCEEEEEc
Confidence 999999999999999999999999999 999999999999999983 369999999997665 888999999886
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 233 ~ 233 (538)
T 1yqt_A 233 G 233 (538)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.1e-36 Score=315.51 Aligned_cols=196 Identities=14% Similarity=0.098 Sum_probs=156.3
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCce-----eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPV-----ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~G-----e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|+... . +++++||++.+| |++||+||||||||||+|+|+|+++ ++|+.. .
T Consensus 350 ~~~~~~y~~~~-~----~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~------~------- 411 (608)
T 3j16_B 350 ASRAFSYPSLK-K----TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI------P------- 411 (608)
T ss_dssp SSSCCEECCEE-E----ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC------C-------
T ss_pred cceeEEecCcc-c----ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc------c-------
Confidence 66778886432 1 599999999999 7799999999999999999999999 788631 0
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
...++|++|+...+...|+.+++... ........+.+.++++.+++.+..+ ++|.+|||||||||+
T Consensus 412 ----------~~~i~~~~q~~~~~~~~tv~e~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSGGqkQRv~ 477 (608)
T 3j16_B 412 ----------KLNVSMKPQKIAPKFPGTVRQLFFKK---IRGQFLNPQFQTDVVKPLRIDDIID-QEVQHLSGGELQRVA 477 (608)
T ss_dssp ----------SCCEEEECSSCCCCCCSBHHHHHHHH---CSSTTTSHHHHHHTHHHHTSTTTSS-SBSSSCCHHHHHHHH
T ss_pred ----------CCcEEEecccccccCCccHHHHHHHH---hhcccccHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHH
Confidence 02689999987655557888877421 1111122345667889999987654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-----ccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY-----LGVSE 295 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~-----~~~~~ 295 (382)
|||||+++|++||||| +||+.++..+.++|+++. ++.|+|||+||||++. +..+||+|++|++ +..+.
T Consensus 478 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~--~~~g~tviivtHdl~~--~~~~aDrvivl~~~~g~~~~~g~ 553 (608)
T 3j16_B 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI--LHNKKTAFIVEHDFIM--ATYLADKVIVFEGIPSKNAHARA 553 (608)
T ss_dssp HHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHH--HHHTCEEEEECSCHHH--HHHHCSEEEECEEETTTEEECCC
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEeCCCCeEEecCC
Confidence 9999999999999999 999999999999999983 4469999999997666 9999999999985 34455
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
|.++++
T Consensus 554 p~~~~~ 559 (608)
T 3j16_B 554 PESLLT 559 (608)
T ss_dssp CEEHHH
T ss_pred hHHHhh
Confidence 555554
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-34 Score=307.91 Aligned_cols=210 Identities=13% Similarity=0.049 Sum_probs=116.8
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHH---------------------HHHHHhhc-ccc
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLV---------------------NLMYSVLS-RSG 126 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl---------------------~~i~Gl~~-~~G 126 (382)
-+|+++.|..+.. ..+|+||||+|++||++||+||||||||||+ ++++|+.. +.|
T Consensus 18 ~~~~~~~~~~~~~---~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~ 94 (670)
T 3ux8_A 18 GSHMDKIIVKGAR---AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVD 94 (670)
T ss_dssp ----CEEEEEEEC---STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCS
T ss_pred CCCcceEEEcCCC---ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCcc
Confidence 3556665533321 1379999999999999999999999999998 88888877 544
Q ss_pred -------eeeeEeecCCCcccceeehhhh----hhhHhhhccceeeEe--CCCCChhhhhhhHHHHHhhhhcCcc---cc
Q 016817 127 -------LVLFAQTSSGNSSHTITMYMEE----HNVMRSLQSGFCVYD--SRGFNYNRVHEGLEELSSWMSEGVH---HN 190 (382)
Q Consensus 127 -------~I~i~G~~i~~~~~~~~~~~~~----~~~~r~~~ig~v~Q~--~~l~~~~tv~eni~~~~~~~~~~~~---~~ 190 (382)
.|.++|.+..........+..+ ...++. .+++++|. ...++.+|+.+|+.+.......... ..
T Consensus 95 ~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 173 (670)
T 3ux8_A 95 AIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFA-RIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIAR 173 (670)
T ss_dssp EEESCCCEEEESSCC-----CCBHHHHTTCC--------------------------CC---------------------
T ss_pred ceeccccceEecCchhhccchhceeeeechhhhHHHHHh-hhcccccccccccccCCcHHHHHHHhhccccchhhhHHHH
Confidence 4445544322111000000000 000111 33444432 2335668999998653211000000 00
Q ss_pred cccc------ccCccccccccccccccCCCccceeeecceeeeehhHHH--HHHHHh---cCCCCcchhhhhhccCcccc
Q 016817 191 QRCL------RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAE--IYKALK---AGDSKPLDATKRLFSAPGLR 259 (382)
Q Consensus 191 ~~~~------~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~--iLLLDE---~LD~~~~~~i~~~l~~l~~~ 259 (382)
.... .+++.+||.+...++++.+|||||||||+|||||+.+|+ +||||| +||+.++..++++|+++
T Consensus 174 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l--- 250 (670)
T 3ux8_A 174 LILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM--- 250 (670)
T ss_dssp -----CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHH---
Confidence 1111 136678887654459999999999999999999999998 999999 99999999999999998
Q ss_pred ccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 260 KCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 260 ~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
++.|.|||+||||++. +. .||++++|
T Consensus 251 ~~~g~tvi~vtHd~~~--~~-~~d~ii~l 276 (670)
T 3ux8_A 251 RDLGNTLIVVEHDEDT--ML-AADYLIDI 276 (670)
T ss_dssp HHTTCEEEEECCCHHH--HH-HCSEEEEE
T ss_pred HHcCCEEEEEeCCHHH--Hh-hCCEEEEe
Confidence 4469999999997765 65 58888888
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-35 Score=321.90 Aligned_cols=209 Identities=12% Similarity=0.035 Sum_probs=146.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|+++..+ +|+|+||+|++|+++||+||||||||||+|+|+|+++ ++|+|+++|.- ..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~----iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~------~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP----QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC------RI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC----SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTC------CE
T ss_pred CceEEEEeeEEEeCCCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCcc------ce
Confidence 4579999999999643222 6999999999999999999999999999999999999 89999997630 00
Q ss_pred eehhhhh---------------hhH-----------------------------------hhhccce--------eeEe-
Q 016817 143 TMYMEEH---------------NVM-----------------------------------RSLQSGF--------CVYD- 163 (382)
Q Consensus 143 ~~~~~~~---------------~~~-----------------------------------r~~~ig~--------v~Q~- 163 (382)
.+..+.. -.+ +++..++ .+|.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 0000000 000 0000011 1111
Q ss_pred -------CC-----CCChhhhhhhHHHHH-------------------hhhh-cCccccccccccCccccccccc-cccc
Q 016817 164 -------SR-----GFNYNRVHEGLEELS-------------------SWMS-EGVHHNQRCLRSDDCALMKNDA-EIDD 210 (382)
Q Consensus 164 -------~~-----l~~~~tv~eni~~~~-------------------~~~~-~~~~~~~~~~~~l~~~~L~~~~-~~~~ 210 (382)
+. .+..+++.+|+.... ...+ ......+++.++++.+||.+.. .+++
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~ 898 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR 898 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCC
Confidence 00 112234433321000 0000 0111234567788899997533 3488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ +.|||+||||++. +..+||++++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~--v~~l~DrViv 970 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEF--TKNLTEEVWA 970 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHH--HTTTCCEEEC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 99999999999999875 4699999997666 8889999999
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 971 L~~ 973 (986)
T 2iw3_A 971 VKD 973 (986)
T ss_dssp CBT
T ss_pred EEC
Confidence 976
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-34 Score=296.24 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=139.9
Q ss_pred HHhhhcccCCeeeecCCcccCCCCCC-ceeeeeeecccCCCchhHHHHHHHhhc-cccee-----------eeEeecCCC
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMDIP-PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-----------LFAQTSSGN 137 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~i~-~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I-----------~i~G~~i~~ 137 (382)
+.+.+|+.+. ++-..|.+. +||++||+||||||||||+|+|+|+++ ++|+| .++|+++..
T Consensus 4 ~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 4 EVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp CEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHH
Confidence 4567887665 444455554 899999999999999999999999998 89998 455543311
Q ss_pred cccceeehhhhhh----hHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCC
Q 016817 138 SSHTITMYMEEHN----VMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 138 ~~~~~~~~~~~~~----~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
..+... ... ..++++.+.+.++. .++.+++.. ....+++.++++.+++.+..+ +++.+
T Consensus 77 -------~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~~~l~~--------~~~~~~~~~~l~~l~l~~~~~-~~~~~ 138 (538)
T 3ozx_A 77 -------YFKELYSNELKIV-HKIQYVEYASKFLK-GTVNEILTK--------IDERGKKDEVKELLNMTNLWN-KDANI 138 (538)
T ss_dssp -------HHHHHHTTCCCEE-EECSCTTGGGTTCC-SBHHHHHHH--------HCCSSCHHHHHHHTTCGGGTT-SBGGG
T ss_pred -------HHHHHhhcccchh-hccchhhhhhhhcc-CcHHHHhhc--------chhHHHHHHHHHHcCCchhhc-CChhh
Confidence 000000 000 02333333333333 355554421 122346677889999986654 99999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ ++ |+|||+||||++. +..+||+|+++++
T Consensus 139 LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l---~~-g~tii~vsHdl~~--~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL---LK-NKYVIVVDHDLIV--LDYLTDLIHIIYG 212 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH---CT-TSEEEEECSCHHH--HHHHCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH---hC-CCEEEEEEeChHH--HHhhCCEEEEecC
Confidence 99999999999999999999999999 99999999999999998 33 8999999996655 9999999999875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-33 Score=292.77 Aligned_cols=203 Identities=14% Similarity=0.054 Sum_probs=139.2
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhh
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEE 148 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~ 148 (382)
+|++++|+.+.. .|++++ .+++||++||+||||||||||+|+|+|+++ ++|+|..................+.
T Consensus 81 ~~~~~~Y~~~~~-----~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 81 AHVTHRYSANSF-----KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TTEEEECSTTSC-----EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECCCce-----eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhh
Confidence 467888865431 377776 689999999999999999999999999999 8999831110000000000000000
Q ss_pred h-hhHhhhccceeeEeCCC--CC------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 149 H-NVMRSLQSGFCVYDSRG--FN------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 149 ~-~~~r~~~ig~v~Q~~~l--~~------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
. .......+..+++...+ ++ ..++.+++. . ......+++.++++.+|+.+..+ +++.+||||||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-----~-~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGe~ 227 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-----L-RMEKSPEDVKRYIKILQLENVLK-RDIEKLSGGEL 227 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH-----H-HCCSCHHHHHHHHHHHTCTGGGG-SCTTTCCHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHh-----h-hhhhHHHHHHHHHHHcCCcchhC-CChHHCCHHHH
Confidence 0 00111133333322111 11 012222221 1 11122356778899999987655 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.++|+++ .+.|+|||+||||++. +..+||+|++|++
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l---~~~g~tvi~vtHdl~~--~~~~~drv~vl~~ 296 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL---LAPTKYVICVEHDLSV--LDYLSDFVCIIYG 296 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG---GTTTCEEEEECSCHHH--HHHHCSEEEEEES
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 99999999999999999999 99999999999999998 4468999999996655 9999999999864
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-32 Score=279.20 Aligned_cols=184 Identities=9% Similarity=-0.039 Sum_probs=147.7
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-e-eeeEeecCCCcc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-L-VLFAQTSSGNSS 139 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~-I~i~G~~i~~~~ 139 (382)
..++++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+++ ++| + |+++|.
T Consensus 115 ~~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------ 176 (460)
T 2npi_A 115 NHTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------ 176 (460)
T ss_dssp CCTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------
T ss_pred Ccchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------
Confidence 357999999999984 4689999999999999999999999999999999 899 9 999983
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCC---ChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---NYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~---~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
.+ +.++|+||++.+| +.+++.+|+ +... ...+....+++.++++.+|+.+.. . +.+|||
T Consensus 177 ------------~~-~~i~~vpq~~~l~~~~~~~tv~eni-~~~~-~~~~~~~~~~~~~ll~~~gl~~~~--~-~~~LSg 238 (460)
T 2npi_A 177 ------------PQ-QPIFTVPGCISATPISDILDAQLPT-WGQS-LTSGATLLHNKQPMVKNFGLERIN--E-NKDLYL 238 (460)
T ss_dssp ------------TT-SCSSSCSSCCEEEECCSCCCTTCTT-CSCB-CBSSCCSSCCBCCEECCCCSSSGG--G-CHHHHH
T ss_pred ------------cc-CCeeeeccchhhcccccccchhhhh-cccc-cccCcchHHHHHHHHHHhCCCccc--c-hhhhhH
Confidence 12 3799999997543 346788887 3221 111222345677889999998653 2 899999
Q ss_pred ceeeecceeee--ehhHHHH----HHHHh----cCCCCcchhhhhhccCccccccCCCCeEEEecCCC--CC--hhhhhh
Q 016817 217 YVLRRVDFAMV--VSNIAEI----YKALK----AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM--LS--TEERLD 282 (382)
Q Consensus 217 GqkQRvaIAra--L~~~P~i----LLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~--l~--~~~~~~ 282 (382)
||||||+|||| |+.+|++ ||||| +||+. ...+.+++++ .+.|+|+||||.+ +. .+..+|
T Consensus 239 Gq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~------~~~tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 239 ECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK------LNVNIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH------TTCCEEEEECCSSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH------hCCCEEEEEccCchhhhHHHHHHhc
Confidence 99999999999 9999999 99999 89999 6666666654 3789999999877 32 477899
Q ss_pred hh-----hhhhh
Q 016817 283 AR-----LKICE 289 (382)
Q Consensus 283 d~-----v~ll~ 289 (382)
|+ |++|+
T Consensus 312 dr~~~~~vi~l~ 323 (460)
T 2npi_A 312 PELGNNNIFFIP 323 (460)
T ss_dssp HHHCGGGEEEEC
T ss_pred ccccCCEEEEEe
Confidence 99 88887
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-33 Score=302.52 Aligned_cols=182 Identities=12% Similarity=-0.000 Sum_probs=146.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
.+...|++++|++ .. +|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+.. .
T Consensus 435 ~L~~~~ls~~yg~--~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~---~----- 493 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQ---E----- 493 (986)
T ss_dssp EEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCT---T-----
T ss_pred eeEEeeEEEEECC--EE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCccc---c-----
Confidence 4555688999954 33 5999999999999999999999999999999996 655 343210 0
Q ss_pred hhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
+ ..++|++|++ .+++.+|+.+|+.. .. .+. .+++.++++.+|+.+...++++.+|||||||||+|
T Consensus 494 -------~-~~~~~v~q~~~~~~~~ltv~e~l~~---~~-~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaL 559 (986)
T 2iw3_A 494 -------E-CRTVYVEHDIDGTHSDTSVLDFVFE---SG-VGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559 (986)
T ss_dssp -------T-SCEEETTCCCCCCCTTSBHHHHHHT---TC-SSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHH
T ss_pred -------c-eeEEEEcccccccccCCcHHHHHHH---hh-cCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHH
Confidence 0 1467888875 66778999998853 11 111 45677889999995333359999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|++ .|.|||+||||++. +..+||++++|++
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~------~g~tvIivSHdl~~--l~~~adrii~L~~ 620 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT------CGITSITISHDSVF--LDNVCEYIINYEG 620 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH------SCSEEEEECSCHHH--HHHHCSEEEEEET
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh------CCCEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 9999999999999875 48899999996666 8899999998876
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-32 Score=292.52 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=130.3
Q ss_pred CCcccCCCCCCceeeeeeecccCCCchhHHHHHH----------------------HhhcccceeeeEeecCCCccccee
Q 016817 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY----------------------SVLSRSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 86 ~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~----------------------Gl~~~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+||||+|++||++||+||||||||||+++|. |+....|.|.++|.++........
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~ 415 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 415 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcch
Confidence 3699999999999999999999999999998764 222234677788776643221100
Q ss_pred e----hhhhhh---------hH---h---------------hhccceeeEeCCCCC------------------------
Q 016817 144 M----YMEEHN---------VM---R---------------SLQSGFCVYDSRGFN------------------------ 168 (382)
Q Consensus 144 ~----~~~~~~---------~~---r---------------~~~ig~v~Q~~~l~~------------------------ 168 (382)
. ..++.. .. + ....|+++|+..+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (670)
T 3ux8_A 416 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 495 (670)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBT
T ss_pred hhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeec
Confidence 0 000000 00 0 012355555544433
Q ss_pred --------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHH---HHHHH
Q 016817 169 --------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA---EIYKA 237 (382)
Q Consensus 169 --------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P---~iLLL 237 (382)
.+|+.+|+.+.. .....++..+.++.+++.....++++.+|||||||||+|||||+++| ++|||
T Consensus 496 ~~~~~~~~~ltv~e~l~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llll 570 (670)
T 3ux8_A 496 GKNIAEVLDMTVEDALDFFA-----SIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 570 (670)
T ss_dssp TBCHHHHHTSBHHHHHHHTT-----TCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEE
T ss_pred CCCHHHHhhCCHHHHHHHHH-----HhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 256666665432 11112334566777888654345899999999999999999999886 59999
Q ss_pred Hh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 238 LK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 238 DE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|| +||+.++..++++|+++ ++.|+|||+||||++. +. .||+|++|
T Consensus 571 DEPt~~LD~~~~~~i~~~l~~l---~~~g~tvi~vtHd~~~--~~-~~d~i~~l 618 (670)
T 3ux8_A 571 DEPTTGLHVDDIARLLDVLHRL---VDNGDTVLVIEHNLDV--IK-TADYIIDL 618 (670)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHH--HT-TCSEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HH-hCCEEEEe
Confidence 99 99999999999999998 3459999999997765 64 58999998
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-29 Score=275.67 Aligned_cols=104 Identities=8% Similarity=-0.019 Sum_probs=85.2
Q ss_pred ccccccCccccccccccccccCCCccceeeecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCC
Q 016817 191 QRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNEN 264 (382)
Q Consensus 191 ~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ 264 (382)
.+..++++.+||.....++++.+|||||||||+|||||+++| ++||||| +||+..+..++++|+++ .++|.
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L---~~~G~ 859 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL---VDRGN 859 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTC
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCC
Confidence 345567888999754345899999999999999999999865 7999999 99999999999999998 44699
Q ss_pred CeEEEecCCCCChhhhhhhhhhhh------hh---ccccccccee
Q 016817 265 PILILTHGDMLSTEERLDARLKIC------EY---LGVSEISGVY 300 (382)
Q Consensus 265 tiIiiTHd~~l~~~~~~~d~v~ll------~~---~~~~~~~~v~ 300 (382)
|||+||||++. +.. ||+|++| ++ +..+++++++
T Consensus 860 TVIvI~HdL~~--i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 860 TVIVIEHNLDV--IKN-ADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEEECCCHHH--HTT-CSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEEEEeCCHHH--HHh-CCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 99999997655 764 8999988 33 5556666655
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-29 Score=268.56 Aligned_cols=209 Identities=14% Similarity=0.080 Sum_probs=139.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHH-HHHhhc-------------------
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNL-MYSVLS------------------- 123 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~-i~Gl~~------------------- 123 (382)
...++++|+++. +|+||||+|++|+++||+|+||||||||+++ |+|++.
T Consensus 500 ~~~L~v~~l~~~-----------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTRN-----------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEET-----------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeeec-----------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 345777777541 4999999999999999999999999999997 887752
Q ss_pred -------ccc-------eeeeEeecCCCccccee----ehhhhhhhH-----hhhccceeeE------------------
Q 016817 124 -------RSG-------LVLFAQTSSGNSSHTIT----MYMEEHNVM-----RSLQSGFCVY------------------ 162 (382)
Q Consensus 124 -------~~G-------~I~i~G~~i~~~~~~~~----~~~~~~~~~-----r~~~ig~v~Q------------------ 162 (382)
.+| .|.++|.++...+.... ......+.. ..+..||.++
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 255 56778776643211100 000000000 0012233222
Q ss_pred ----eCCCCC------------------------hhhhhhhHHHHH---hhhhcCccccccccccCcccccccccccccc
Q 016817 163 ----DSRGFN------------------------YNRVHEGLEELS---SWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 163 ----~~~l~~------------------------~~tv~eni~~~~---~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
+..+++ ..++.+++.... ..+.......+++.++++.+||.....++++
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~ 728 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPA 728 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCG
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCc
Confidence 111111 133444331100 0011111112356678889999863334899
Q ss_pred CCCccceeeecceeeeehhH---HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNI---AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~---P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
.+|||||||||+|||+|+.+ |++||||| +||+..+..++++|+++ .+.|.|||+||||++. + ..||+|
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L---~~~G~tVIvisHdl~~--i-~~aDri 802 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL---VDAGNTVIAVEHKMQV--V-AASDWV 802 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHH--H-TTCSEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHH--H-HhCCEE
Confidence 99999999999999999996 79999999 99999999999999998 4469999999997665 7 679999
Q ss_pred hhhh
Q 016817 286 KICE 289 (382)
Q Consensus 286 ~ll~ 289 (382)
++|.
T Consensus 803 i~L~ 806 (842)
T 2vf7_A 803 LDIG 806 (842)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9993
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-28 Score=237.74 Aligned_cols=190 Identities=15% Similarity=0.081 Sum_probs=138.3
Q ss_pred ccchhhhhhhccCCCCccccchhHHHHHHhhhhhhcC------cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCcee
Q 016817 26 AAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALIA------PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge 99 (382)
..|+.+++.+...+..+..+..|+.++++.++..... ..++|+++||+|+|+ .. +|+++||+|++|+
T Consensus 55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~-~~------vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF-IN------ALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH-HH------HHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC-hh------hhccceEEecCCC
Confidence 5789999999999999999999999999887542111 123699999999996 22 6999999999999
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh-hHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE-GLEE 178 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e-ni~~ 178 (382)
+++|+||||||||||+++|+|++ +|+|.. |++|++.+|. .|+.+ |+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~----------------------------~v~q~~~lf~-~ti~~~ni~~ 176 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL--GGSVLS----------------------------FANHKSHFWL-ASLADTRAAL 176 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH--TCEEEC----------------------------GGGTTSGGGG-GGGTTCSCEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhc--CceEEE----------------------------EecCcccccc-ccHHHHhhcc
Confidence 99999999999999999999999 788743 3344554444 35554 5421
Q ss_pred HHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-cCCCCcchhhhhhccCcc
Q 016817 179 LSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-AGDSKPLDATKRLFSAPG 257 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-~LD~~~~~~i~~~l~~l~ 257 (382)
. .. . ...+.+.++.+ +.+.++ +.+|||||||| ||||+.+|+||| = +||+.++..+..
T Consensus 177 ~-----~~-~-~~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl--Ts~LD~~~~~~i~~------ 234 (305)
T 2v9p_A 177 V-----DD-A-THACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV--TSNIDVQAEDRYLY------ 234 (305)
T ss_dssp E-----EE-E-CHHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE--EESSCSTTCGGGGG------
T ss_pred C-----cc-c-cHHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE--ECCCCHHHHHHHHH------
Confidence 1 00 0 01122222221 222221 77999999999 999999999999 7 999999988752
Q ss_pred ccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 258 LRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 258 ~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||++.. + ..+|+| +|++
T Consensus 235 -----------ltH~~~~--~-~~aD~i-vl~~ 252 (305)
T 2v9p_A 235 -----------LHSRVQT--F-RFEQPC-TDES 252 (305)
T ss_dssp -----------GTTTEEE--E-ECCCCC-CCC-
T ss_pred -----------HhCCHHH--H-HhCCEE-EEeC
Confidence 1785443 4 468888 8876
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-27 Score=219.18 Aligned_cols=140 Identities=10% Similarity=-0.051 Sum_probs=92.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+++ ++|++++|+||||||||||+++|+|+ + ++|+|.. .++. ... ...+ +.+||+||++
T Consensus 15 ~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-------~~~---~~~~-~~ig~v~q~~- 75 (208)
T 3b85_A 15 YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-------RPA---VEAG-EKLGFLPGTL- 75 (208)
T ss_dssp HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-------ECS---CCTT-CCCCSSCC---
T ss_pred HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-------CCc---hhhh-cceEEecCCH-
Confidence 68885 89999999999999999999999999 8 8999953 2111 000 0123 3799999986
Q ss_pred CCChhhhhhhH-HHHHhhhh--cCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh--c
Q 016817 166 GFNYNRVHEGL-EELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--A 240 (382)
Q Consensus 166 l~~~~tv~eni-~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~ 240 (382)
.+|+ .+...... ......+.+.++++ + .| ||||||+|||||+.+|++||||| +
T Consensus 76 -------~enl~~~~~~~~~~~~~~~~~~~~~~~l~----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 76 -------NEKIDPYLRPLHDALRDMVEPEVIPKLME----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp -----------CTTTHHHHHHHTTTSCTTHHHHHHH----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred -------HHHHHHHHHHHHHHHHHhccHHHHHHHHH----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2232 11000000 01011111222211 1 22 99999999999999999999999 2
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
- ++..++++|+++ . .|+||| ||||++.
T Consensus 134 ~---~~~~l~~~l~~l---~-~g~tii-vtHd~~~ 160 (208)
T 3b85_A 134 T---TPAQMKMFLTRL---G-FGSKMV-VTGDITQ 160 (208)
T ss_dssp C---CHHHHHHHHTTB---C-TTCEEE-EEEC---
T ss_pred c---cHHHHHHHHHHh---c-CCCEEE-EECCHHH
Confidence 2 889999999987 2 488999 9997765
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-28 Score=266.22 Aligned_cols=202 Identities=15% Similarity=0.103 Sum_probs=137.8
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHH-Hhh----c----ccc---------
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVL----S----RSG--------- 126 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~-Gl~----~----~~G--------- 126 (382)
+.++++|++. . +|+||||+|++|+++||+|+||||||||+++|+ |.+ . ..|
T Consensus 628 ~~L~v~~l~~-----~------~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-----H------NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-----S------SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-----c------ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4566777642 1 499999999999999999999999999999864 332 1 223
Q ss_pred ----eeeeEeecCCCcccce--ee--hhhhhhhH-----hhhccceeeEeCCCCC-------------------------
Q 016817 127 ----LVLFAQTSSGNSSHTI--TM--YMEEHNVM-----RSLQSGFCVYDSRGFN------------------------- 168 (382)
Q Consensus 127 ----~I~i~G~~i~~~~~~~--~~--~~~~~~~~-----r~~~ig~v~Q~~~l~~------------------------- 168 (382)
.|.++|.++....... .+ .....+.+ ..+.+||++|.+.+.+
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 2667776654221100 00 00000100 0124677777532210
Q ss_pred -----------------------------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 169 -----------------------------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 169 -----------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+|+.+++.++. ......+..++++.+||.....++++.+||||||
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~-----~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-----SIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC-----SCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHH
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh-----cchhHHHHHHHHHHcCCCcccccCchhhCCHHHH
Confidence 123444443211 1111123456788999986233489999999999
Q ss_pred eecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 220 QRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||+|||+|+.+| ++||||| +||+..+..++++|+++ .+.|.|||+||||++. +. .||+|++|
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L---~~~G~TVIvisHdl~~--i~-~aDrIivL 920 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL---VDNGDTVLVIEHNLDV--IK-TADYIIDL 920 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHH--HT-TCSEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHH--HH-hCCEEEEE
Confidence 9999999999865 9999999 99999999999999998 4469999999997665 64 79999999
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-27 Score=217.37 Aligned_cols=171 Identities=10% Similarity=-0.074 Sum_probs=115.3
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+++| .+|++|++++|+||||||||||+|+|+|+++ ..+.+.+.+.+. .. ..+ +.++|+||++.
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~-----------~~--~~~-~~i~~~~q~~~ 74 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP-----------RP--GEV-DGVDYHFIDPT 74 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC-----------CT--TCC-BTTTBEECCHH
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCC-----------cc--ccc-CCCeeEecCHH
Confidence 5888 7999999999999999999999999999986 333322222110 00 012 37999999988
Q ss_pred CCChhhhhhhHHHHHhhhh----cCc---ccccccccc------CccccccccccccccCCCccceeeecceeeeehhHH
Q 016817 166 GFNYNRVHEGLEELSSWMS----EGV---HHNQRCLRS------DDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA 232 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~----~~~---~~~~~~~~~------l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P 232 (382)
+|+.+++.+++......+. .+. ..++++.+. ++.+|+.+.. ++++.+|| +|+.+|
T Consensus 75 ~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~lS-----------~l~~~p 142 (207)
T 1znw_A 75 RFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIK-KTMPEAVT-----------VFLAPP 142 (207)
T ss_dssp HHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHH-HHCTTSEE-----------EEEECS
T ss_pred HHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHH-HhcCCcEE-----------EEEECC
Confidence 8888888776632110000 011 111233333 7788887544 48899998 899999
Q ss_pred HHHHHHh---cC----CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 233 EIYKALK---AG----DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 233 ~iLLLDE---~L----D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
++++||| ++ |+..+..+.++++++. ++.|.|+|+||||++. +..+||+|++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~--~~~g~tvi~vtHdl~~--~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELA--AQGDFDKVVVNRRLES--ACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH--GGGGSSEEEECSSHHH--HHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--hhccCcEEEECCCHHH--HHHHHHHHHHhc
Confidence 9999999 66 5668899999999883 4468999999996555 999999999884
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-27 Score=237.75 Aligned_cols=70 Identities=16% Similarity=-0.011 Sum_probs=63.1
Q ss_pred CccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||||||||+||++|+.+| ++||||| +||+..+..+.+.|+++ . +|.|||+||||+.+ + ..||+++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l---~-~~~~vi~itH~~~~--~-~~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL---A-DTRQVLVVTHLAQI--A-ARAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH---T-TTSEEEEECSCHHH--H-TTCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---h-CCCEEEEEeCcHHH--H-hhcCeEEEE
Confidence 6999999999999999999 9999999 99999999999999998 3 58999999997654 5 468999888
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
.+
T Consensus 369 ~k 370 (415)
T 4aby_A 369 EK 370 (415)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-26 Score=232.90 Aligned_cols=169 Identities=10% Similarity=-0.063 Sum_probs=133.8
Q ss_pred CcccCCCCCCcee--------------------eeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 87 GIQKGGMDIPPVI--------------------TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 87 vL~~isl~i~~Ge--------------------~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
+|++|||+|++|+ ++||+||||||||||+|+|+|+++ ++|+|.++|.++.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t--------- 108 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------- 108 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---------
Confidence 6999999999999 999999999999999999999999 8999999987431
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccc--eeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKY--VLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG--qkQRva 223 (382)
+.++++|++ .++++++.|++.+. . ....+.++++.+++.+. . ..+. |||| |+||++
T Consensus 109 ----------~~~~v~q~~-~~~~ltv~D~~g~~-----~---~~~~~~~~L~~~~L~~~-~-~~~~-lS~G~~~kqrv~ 166 (413)
T 1tq4_A 109 ----------MERHPYKHP-NIPNVVFWDLPGIG-----S---TNFPPDTYLEKMKFYEY-D-FFII-ISATRFKKNDID 166 (413)
T ss_dssp ----------CCCEEEECS-SCTTEEEEECCCGG-----G---SSCCHHHHHHHTTGGGC-S-EEEE-EESSCCCHHHHH
T ss_pred ----------eeEEecccc-ccCCeeehHhhccc-----c---hHHHHHHHHHHcCCCcc-C-CeEE-eCCCCccHHHHH
Confidence 127899985 56778998877321 1 13456778888888754 3 4444 9999 999999
Q ss_pred eeeeehh----------HHHHHHHHh---cCCCCcchhhhhhccCcccc--ccC----CCCeEEEecCCCCChhhhhhhh
Q 016817 224 FAMVVSN----------IAEIYKALK---AGDSKPLDATKRLFSAPGLR--KCN----ENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 224 IAraL~~----------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~--~~~----g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
||+||+. +|++++||| +||+..+..+++.|+++... .+. ..+++++||++.-..+..++++
T Consensus 167 la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~ 246 (413)
T 1tq4_A 167 IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDK 246 (413)
T ss_dssp HHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHH
Confidence 9999999 999999999 99999999999999987300 012 3568889996554447888887
Q ss_pred hh
Q 016817 285 LK 286 (382)
Q Consensus 285 v~ 286 (382)
+.
T Consensus 247 I~ 248 (413)
T 1tq4_A 247 LI 248 (413)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-26 Score=214.39 Aligned_cols=179 Identities=9% Similarity=0.021 Sum_probs=115.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
.|+||||+|++|++++|+||||||||||+++|+|++ + |+|.+ |.++...... ...+ ..++|+||++.+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~--------~~~~-~~i~~~~~~~~~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKR--------EKEK-EGVDYYFIDKTI 79 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCC--------SSCC-BTTTBEECCHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCC--------cccc-cCCeEEECCHHH
Confidence 499999999999999999999999999999999999 4 99999 7754321110 0022 379999999877
Q ss_pred CChhh-hhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecce-----eeeehhHHHHHHHHh
Q 016817 167 FNYNR-VHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF-----AMVVSNIAEIYKALK 239 (382)
Q Consensus 167 ~~~~t-v~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI-----AraL~~~P~iLLLDE 239 (382)
|+.++ ..+++........ .+.. ...+.++++...+. +. ...|||||+||++| ||+|+.+|++++|||
T Consensus 80 ~~~~~~~~~~l~~~~~~~~~~g~~-~~~i~~~l~~~~~~--il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 80 FEDKLKNEDFLEYDNYANNFYGTL-KSEYDKAKEQNKIC--LF---EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEE-HHHHHHHHHTTCEE--EE---EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred HHHhhhccchhhhhhcccccCCCc-HHHHHHHHhCCCcE--EE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 77654 2223211100000 0111 12233333332221 11 25789999999999 999999999999999
Q ss_pred ---cCCCCcchhhhhhccCcccccc------CCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 240 ---AGDSKPLDATKRLFSAPGLRKC------NENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 240 ---~LD~~~~~~i~~~l~~l~~~~~------~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
++|..+...+.+.+.+.. .+ .+.+.|+++|| ++++....++++.
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~--~~~~~~h~~~~d~iiv~~~--~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLN--IELHEANLLNFNLSIINDD--LTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHH--HHHHHHTTSCCSEEEECSS--HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH--HHHHhhcccCCCEEEECCC--HHHHHHHHHHHHH
Confidence 999999999988887652 21 45789999994 5457777776664
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-26 Score=219.32 Aligned_cols=179 Identities=11% Similarity=-0.057 Sum_probs=127.1
Q ss_pred cCcCchhHHHHHhhhcccCCeeeecCCcccCCC-----------------------CCCceeeeeeecccCCCchhHHHH
Q 016817 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM-----------------------DIPPVITILLMGFSGSGKSSLVNL 117 (382)
Q Consensus 61 ~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl-----------------------~i~~Ge~~alvGpnGsGKSTLl~~ 117 (382)
...+..|+++||++.|.. +++++++ ++++|+++||+||||||||||+++
T Consensus 38 ~~~~~~i~~~~v~~~y~p--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 38 RGLGEQIDLLEVEEVYLP--------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCTTCCCCHHHHHHTHHH--------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCeEEeeehhhhhhh--------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHH
Confidence 345668999999999942 2444443 289999999999999999999999
Q ss_pred HHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccc
Q 016817 118 MYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLR 195 (382)
Q Consensus 118 i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~ 195 (382)
|+|+++ ..|. ..+++++|++.+++. |+.+|+.... ..+.. ..+.+.+.+
T Consensus 110 L~gll~~~~G~---------------------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~ 160 (312)
T 3aez_A 110 LQALLARWDHH---------------------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMR 160 (312)
T ss_dssp HHHHHHTSTTC---------------------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHH
T ss_pred HHhhccccCCC---------------------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHH
Confidence 999998 5553 168999999988887 9998874321 11111 112244566
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecC
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
.++.++ .... +.++.+|||||+|||++|||++.+|+|||+|| .+|+.. ..+.++ .+ .+|+|+|+
T Consensus 161 ~L~~l~-~~~~-~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~-----~D-~~I~V~a~ 227 (312)
T 3aez_A 161 FVTSVK-SGSD-YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDL-----FD-FSLYVDAR 227 (312)
T ss_dssp HHHHHH-TTCS-CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGG-----CS-EEEEEEEC
T ss_pred HHHHhC-CCcc-cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHh-----cC-cEEEEECC
Confidence 777777 4333 37788999999999999999999999999999 666532 123333 23 34777885
Q ss_pred CCCChhhhhhhhhhhhhh
Q 016817 273 DMLSTEERLDARLKICEY 290 (382)
Q Consensus 273 ~~l~~~~~~~d~v~ll~~ 290 (382)
.+. ...+..+|.+.+.+
T Consensus 228 ~~~-~~~R~i~R~~~~rd 244 (312)
T 3aez_A 228 IED-IEQWYVSRFLAMRT 244 (312)
T ss_dssp HHH-HHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHh
Confidence 544 13345666666655
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-25 Score=227.71 Aligned_cols=199 Identities=11% Similarity=-0.020 Sum_probs=144.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee---cCCCcc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT---SSGNSS 139 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~---~i~~~~ 139 (382)
.++++++++++.|+.+. . +|+++ |+|.+|++++|+||||||||||+++|+|+.+ ++|.|.++|+ ++.+..
T Consensus 129 ~~~l~~~~v~~~~~tg~-~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGV-R----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFI 202 (438)
T ss_dssp CCTTTSCCCCSBCCCSC-H----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHH
T ss_pred CCceEEeccceecCCCc-e----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHH
Confidence 46899999999996432 1 69999 9999999999999999999999999999999 8999999997 321100
Q ss_pred cceeehhhhhhhHhhhccceeeEe-CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYD-SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~-~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
. .......++ +.++|++|+ ..+++++++.+|+...+..+.. ..+.+..+ + ..+..||+||
T Consensus 203 ~----~~~~~~~l~-r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~---~~~~v~~~---------l--d~l~~lS~g~ 263 (438)
T 2dpy_A 203 E----NILGPDGRA-RSVVIAAPADVSPLLRMQGAAYATRIAEDFRD---RGQHVLLI---------M--DSLTRYAMAQ 263 (438)
T ss_dssp H----TTTHHHHHH-TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT---TTCEEEEE---------E--ECHHHHHHHH
T ss_pred H----hhccccccC-ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh---CCCCHHHH---------H--HhHHHHHHHH
Confidence 0 000012234 389999995 5567789999999776543321 11112111 1 1256789999
Q ss_pred eeecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccc---cCCC-----CeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 219 LRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRK---CNEN-----PILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~---~~g~-----tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|| +.+|++ -++||+..+..+.+++.++. + +.|. ||+++|||++ ..++|+++++.+
T Consensus 264 -qrvslA---l~~p~~---t~glD~~~~~~l~~ll~r~~--~~~~~~GsiT~~~tVlv~tHdl~----~~iad~v~~l~d 330 (438)
T 2dpy_A 264 -REIALA---IGEPPA---TKGYPPSVFAKLPALVERAG--NGIHGGGSITAFYTVLTEGDDQQ----DPIADSARAILD 330 (438)
T ss_dssp -HHHHHH---TTCCCC---SSSCCTTHHHHHHHHHTTCS--CCSTTSCEEEEEEEEECSSSCSC----CHHHHHHHHHSS
T ss_pred -HHHHHH---hCCCcc---cccCCHHHHHHHHHHHHHHH--hccCCCCcccceeEEEEeCCCcc----chhhceEEEEeC
Confidence 999999 788887 22999999999999999983 3 2364 9999999665 457888888876
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+.+.++.
T Consensus 331 G~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 331 GHIVLSRRLAEAG 343 (438)
T ss_dssp EEEEECHHHHHTT
T ss_pred cEEEEeCCHHHcc
Confidence 4444444433
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-26 Score=200.91 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=97.5
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC-CC
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG-FN 168 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l-~~ 168 (382)
|+||++++||+++|+||||||||||+|++.+ |...+.+. ...|+++|++.- +.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~~~d---------------------~~~g~~~~~~~~~~~ 54 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK-----PTEVISSD---------------------FCRGLMSDDENDQTV 54 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC-----GGGEEEHH---------------------HHHHHHCSSTTCGGG
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc-----CCeEEccH---------------------HHHHHhcCcccchhh
Confidence 5799999999999999999999999998542 22222211 022677777521 11
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCC-
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSK- 244 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~- 244 (382)
..++++++...... ....+.... . ......|||||||++||||++.+|++|+||| +||+.
T Consensus 55 ~~~~~~~~~~~~~~--------------~~~~g~~~~-~-~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 55 TGAAFDVLHYIVSK--------------RLQLGKLTV-V-DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN 118 (171)
T ss_dssp HHHHHHHHHHHHHH--------------HHHTTCCEE-E-ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHhCCCeEE-E-ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence 12223333211100 001122212 1 2345569999999999999999999999999 99999
Q ss_pred ---------------cchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 245 ---------------PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 245 ---------------~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
.+..+.+.|+++ +++|.|+|+||||++. +..
T Consensus 119 ~~R~~~~~~~~vi~~~~~~l~~~l~~l---~~~g~tvi~vtH~~~~--~~~ 164 (171)
T 4gp7_A 119 KNRTDRQVEEYVIRKHTQQMKKSIKGL---QREGFRYVYILNSPEE--VEE 164 (171)
T ss_dssp HTCSSCCCCHHHHHHHHHHHHHHSTTH---HHHTCSEEEEECSHHH--HHH
T ss_pred hcccCCCCCHHHHHHHHHHhhhhhhhH---HhcCCcEEEEeCCHHH--hhh
Confidence 558889999998 3359999999996554 654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-24 Score=207.78 Aligned_cols=188 Identities=12% Similarity=0.043 Sum_probs=134.9
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
.+.+...++... +++.+||++++|++++|+||||||||||++.|+|+++ ++|+|.++|.++..... ..
T Consensus 77 ~~~l~~~l~~~~------~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a-----~~ 145 (302)
T 3b9q_A 77 KESVLEMLAKKN------SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA-----SD 145 (302)
T ss_dssp HHHHHHHHCC--------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH-----HH
T ss_pred HHHHHHHhCCcc------cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhH-----HH
Confidence 445555554322 3568899999999999999999999999999999999 89999999987643211 11
Q ss_pred hhhhHh-hhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 148 EHNVMR-SLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 148 ~~~~~r-~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
++..++ +..++|++|++. +++..++++|+..... .. ....+++.+|+.+.. ++++.+|| |||++||
T Consensus 146 ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~---~~-----~d~~lldt~gl~~~~-~~~~~eLS---kqr~~ia 213 (302)
T 3b9q_A 146 QLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE---EG-----YDVVLCDTSGRLHTN-YSLMEELI---ACKKAVG 213 (302)
T ss_dssp HHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH---TT-----CSEEEECCCCCSSCC-HHHHHHHH---HHHHHHH
T ss_pred HHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHH---cC-----CcchHHhcCCCCcch-hHHHHHHH---HHHHHHH
Confidence 222221 237999999988 8999999999975421 11 112467788887554 48999999 9999999
Q ss_pred eeehhHHH--HHHHHh--cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAE--IYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~--iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|+ +|+||- ++|+..+ ++++. ++.|.|+|++||. +- ..+....+-+...
T Consensus 214 ral~~~P~e~lLvLDptsglD~~~~------~~~~~--~~~g~t~iiiThl-D~--~~~~g~~l~~~~~ 271 (302)
T 3b9q_A 214 KIVSGAPNEILLVLDGNTGLNMLPQ------AREFN--EVVGITGLILTKL-DG--SARGGCVVSVVEE 271 (302)
T ss_dssp TTSTTCCSEEEEEEEGGGGGGGHHH------HHHHH--HHTCCCEEEEECC-SS--CSCTHHHHHHHHH
T ss_pred HhhccCCCeeEEEEeCCCCcCHHHH------HHHHH--HhcCCCEEEEeCC-CC--CCccChheehHHH
Confidence 99999999 999998 8888654 23331 2358999999993 22 4455555555543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-24 Score=194.19 Aligned_cols=138 Identities=11% Similarity=0.022 Sum_probs=96.8
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL 179 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~ 179 (382)
.++|+||||||||||+++|+|++. |.++|.+..+.. .. ..+ +.+||++|++ ++.+++ .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~------~~---~~~-~~ig~~~~~~------~~~~~~--~ 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVR------DP---ETK-KRTGFRIITT------EGKKKI--F 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC----------------CCEEEEEET------TCCEEE--E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhc------cc---ccc-ceeEEEeecC------cHHHHH--H
Confidence 589999999999999999999985 667775321100 00 122 3799999986 222222 0
Q ss_pred HhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee-----ehhHHHHHHHHh-----cCCCCcchhh
Q 016817 180 SSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV-----VSNIAEIYKALK-----AGDSKPLDAT 249 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra-----L~~~P~iLLLDE-----~LD~~~~~~i 249 (382)
. .+ .. .-.+.. ++++.+||||||||++|||| |+.+|++|+||| +||+..+..+
T Consensus 60 ~-~~--~~-------------~~~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 60 S-SK--FF-------------TSKKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp E-ET--TC-------------CCSSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred H-hh--cC-------------Cccccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 0 00 00 000233 48899999999999999996 999999999999 7999999888
Q ss_pred hhhccCccccccCCCCeEEEec---CCCCChhhhhhhh
Q 016817 250 KRLFSAPGLRKCNENPILILTH---GDMLSTEERLDAR 284 (382)
Q Consensus 250 ~~~l~~l~~~~~~g~tiIiiTH---d~~l~~~~~~~d~ 284 (382)
.+.+.+ .+.|+|++|| |.++ +..++++
T Consensus 123 ~~~l~~------~~~~~i~~~H~~h~~~~--~~~i~~r 152 (178)
T 1ye8_A 123 RQIMHD------PNVNVVATIPIRDVHPL--VKEIRRL 152 (178)
T ss_dssp HHHHTC------TTSEEEEECCSSCCSHH--HHHHHTC
T ss_pred HHHHhc------CCCeEEEEEccCCCchH--HHHHHhc
Confidence 888876 3667899986 4444 6666665
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-24 Score=224.31 Aligned_cols=188 Identities=15% Similarity=0.027 Sum_probs=136.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCC-CCCceeeeeeecccCCCchhHHHH--HHHhhc-ccceeeeEeecCCCccc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGM-DIPPVITILLMGFSGSGKSSLVNL--MYSVLS-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl-~i~~Ge~~alvGpnGsGKSTLl~~--i~Gl~~-~~G~I~i~G~~i~~~~~ 140 (382)
.+++.+++.+ |+.+. ++|+++|| .|++|++++|+||||||||||+++ ++|+++ .+|.|+++|++.
T Consensus 11 ~~~~~~~~~~-~~~g~-----~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~----- 79 (525)
T 1tf7_A 11 NNSEHQAIAK-MRTMI-----EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET----- 79 (525)
T ss_dssp ---CCSSCCE-ECCCC-----TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-----
T ss_pred CCcccccccc-ccCCc-----hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-----
Confidence 3455555543 43332 27999999 999999999999999999999999 789999 899999999852
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.......+ +.+||+||++...+ |+. ..... ..+...++++.+++.+.+. +.+.+|||||+|
T Consensus 80 -----~~~~~~~~-~~~g~~~q~~~~~~------~l~----~~~~~--~~~~~~~~l~~~~l~~~~~-~~~~~LS~g~~~ 140 (525)
T 1tf7_A 80 -----PQDIIKNA-RSFGWDLAKLVDEG------KLF----ILDAS--PDPEGQEVVGGFDLSALIE-RINYAIQKYRAR 140 (525)
T ss_dssp -----HHHHHHHH-GGGTCCHHHHHHTT------SEE----EEECC--CCSSCCSCCSSHHHHHHHH-HHHHHHHHHTCS
T ss_pred -----HHHHHHHH-HHcCCChHHhhccC------cEE----EEecC--cccchhhhhcccCHHHHHH-HHHHHHHHcCCC
Confidence 11112223 37999999854211 110 00000 1123456788899987654 999999999999
Q ss_pred ecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCC------h-hhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLS------T-EERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~------~-~~~~~d~v~ll~~ 290 (382)
||.|+.+.+..|. + ++|+..+..++++++.+ ++.|+|||+|||+++.. . +..+||+|++|++
T Consensus 141 ~lilDe~t~~~~~---~--~lD~~~~~~l~~ll~~l---~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 141 RVSIDSVTSVFQQ---Y--DASSVVRRELFRLVARL---KQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEECSTTTSTT---T--CCHHHHHHHHHHHHHHH---HHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEECCHHHHHHh---c--CCHHHHHHHHHHHHHHH---HHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9999988887663 2 78999999999999998 34699999999976551 0 2445999999976
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-24 Score=203.72 Aligned_cols=145 Identities=13% Similarity=0.026 Sum_probs=91.3
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEE 178 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 178 (382)
.++|+||||||||||+|+|+|+.. ++|+|.++|+++.... .+ +.+||++|++.+++.+||.+|+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~------------~~-~~i~~v~q~~~~~~~ltv~d~~~~ 70 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV------------EI-KAIGHVIEEGGVKMKLTVIDTPGF 70 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCC------------SC-CEEEESCC----CCEEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce------------ee-eeeEEEeecCCCcCCceEEechhh
Confidence 489999999999999999999999 8999999998653211 11 379999999999999999999854
Q ss_pred HHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccC
Q 016817 179 LSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSA 255 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~ 255 (382)
.. .... ....+.+..+..... .++.+.+|||||||||+||||++. ++++|| +||+.. .+.++.
T Consensus 71 g~-----~~~~-~~~~~~i~~~~~~~~-~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~ 136 (270)
T 3sop_A 71 GD-----QINN-ENCWEPIEKYINEQY-EKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKH 136 (270)
T ss_dssp -C-----CSBC-TTCSHHHHHHHHHHH-HHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHH
T ss_pred hh-----hccc-HHHHHHHHHHHHHHH-HhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHH
Confidence 32 1111 111122222222333 347889999999999999999997 999998 788765 445555
Q ss_pred ccccccCCCCeEEEecCCCC
Q 016817 256 PGLRKCNENPILILTHGDML 275 (382)
Q Consensus 256 l~~~~~~g~tiIiiTHd~~l 275 (382)
+ ++. .++|+|.|..+.
T Consensus 137 L---~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 137 L---SKV-VNIIPVIAKADT 152 (270)
T ss_dssp H---HTT-SEEEEEETTGGG
T ss_pred H---Hhc-CcEEEEEecccc
Confidence 5 223 788888885443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-24 Score=208.50 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=63.1
Q ss_pred ccccCCCccceeeecceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
++++.+|||||||||+|||||+ .+|++||||| +||+..+..+.+.|+++ . .|.|+|+|||++. +..
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~---~-~~~~vi~~tH~~~---~~~ 286 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN---S-KHTQFIVITHNKI---VME 286 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH---T-TTSEEEEECCCTT---GGG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh---c-CCCeEEEEECCHH---HHh
Confidence 4678899999999999999997 5789999999 99999999999999987 2 4789999999753 345
Q ss_pred hhhhh--hhhh
Q 016817 281 LDARL--KICE 289 (382)
Q Consensus 281 ~~d~v--~ll~ 289 (382)
.||++ +++.
T Consensus 287 ~~d~~~~v~~~ 297 (322)
T 1e69_A 287 AADLLHGVTMV 297 (322)
T ss_dssp GCSEEEEEEES
T ss_pred hCceEEEEEEe
Confidence 67765 4444
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-24 Score=210.13 Aligned_cols=77 Identities=8% Similarity=-0.002 Sum_probs=68.0
Q ss_pred ccccCCCccceeeecceeeeeh------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVS------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE 278 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~ 278 (382)
++++.+|||||||||+|||||+ .+|++||||| +||+.++..+++.|+++ .+.|.|||+||||++. +
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l---~~~g~tvi~itH~~~~--~ 348 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL---ERLNKVIVFITHDREF--S 348 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGG---GGSSSEEEEEESCHHH--H
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhCCCEEEEEecchHH--H
Confidence 3789999999999999999999 6999999999 99999999999999998 4469999999997654 4
Q ss_pred hhhhhhhhhhhh
Q 016817 279 ERLDARLKICEY 290 (382)
Q Consensus 279 ~~~~d~v~ll~~ 290 (382)
..+|+++++++
T Consensus 349 -~~~d~~~~l~~ 359 (365)
T 3qf7_A 349 -EAFDRKLRITG 359 (365)
T ss_dssp -TTCSCEEEEET
T ss_pred -HhCCEEEEEEC
Confidence 45788888765
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-23 Score=203.94 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=129.5
Q ss_pred ccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhH-hhhccceeeEeCC-
Q 016817 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVM-RSLQSGFCVYDSR- 165 (382)
Q Consensus 89 ~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~-r~~~ig~v~Q~~~- 165 (382)
..+||++++|++++|+||||||||||++.|+|+++ ++|+|.++|.++..... ..++..+ ++..++|++|++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a-----~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA-----SDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH-----HHHHHHHHHHHTCEEECCSSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccch-----hHHHHHHHHhcCeEEEEecccc
Confidence 57899999999999999999999999999999999 89999999987643211 1122222 1237999999988
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHH--HHHHHh--cC
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAE--IYKALK--AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~--iLLLDE--~L 241 (382)
+++..++++|+..... .. . ...+++.+|+.+.. ++++.+|| +||++|||||+.+|+ +|+||- ++
T Consensus 223 ~~p~~tv~e~l~~~~~---~~--~---d~~lldt~Gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttgl 290 (359)
T 2og2_A 223 AKAATVLSKAVKRGKE---EG--Y---DVVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGL 290 (359)
T ss_dssp CCHHHHHHHHHHHHHH---TT--C---SEEEEECCCCSSCC-HHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGG
T ss_pred cChhhhHHHHHHHHHh---CC--C---HHHHHHhcCCChhh-hhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCC
Confidence 8899999999975421 11 1 12456778887554 48899999 999999999999999 999998 88
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|+.++. +++. ++.|.|+|++||. + ...+....+-+..
T Consensus 291 D~~~~~------~~~~--~~~g~t~iiiThl-D--~~~~gG~~lsi~~ 327 (359)
T 2og2_A 291 NMLPQA------REFN--EVVGITGLILTKL-D--GSARGGCVVSVVE 327 (359)
T ss_dssp GGHHHH------HHHH--HHTCCCEEEEESC-T--TCSCTHHHHHHHH
T ss_pred CHHHHH------HHHH--HhcCCeEEEEecC-c--ccccccHHHHHHH
Confidence 887542 2331 2358999999993 2 2445555555544
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-23 Score=192.27 Aligned_cols=150 Identities=10% Similarity=-0.065 Sum_probs=96.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ . .+ +.++|++|+. +
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~-~------------------~~-~~i~~v~~d~-~ 69 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE-Q------------------RQ-RKVVILSQDR-F 69 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC-G------------------GG-CSEEEEEGGG-G
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc-c------------------cC-CceEEEeCCc-C
Confidence 699999999999999999999999999999999987 666554 0 22 3799999995 5
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCcccc-ccccccccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCc
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-MKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKP 245 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~ 245 (382)
++.+++.+++......+....+.......+.+.++ +.+.. +.++.+||+||+||+++ ++++.+|+++|+|| +|+..
T Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg-~~~~~ 146 (245)
T 2jeo_A 70 YKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGK-TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEG-ILVFY 146 (245)
T ss_dssp BCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSS-CEEECCCSEEEEEC-TTTTT
T ss_pred ccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCC-CeecccccccccCccCc-eEEecCCCEEEEeC-ccccc
Confidence 66678888775432111101111111111222332 33333 37889999999999998 68899999999997 44443
Q ss_pred chhhhhhccCccccccCCCCeEEEecC
Q 016817 246 LDATKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 246 ~~~i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
...+ .++ .+.+|+++||+
T Consensus 147 ~~~l----~~~-----~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQEI----RDM-----FHLRLFVDTDS 164 (245)
T ss_dssp SHHH----HTT-----CSEEEEEECCH
T ss_pred cHHH----HHh-----cCeEEEEECCH
Confidence 3333 333 36799999994
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-23 Score=202.72 Aligned_cols=138 Identities=10% Similarity=0.014 Sum_probs=104.3
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
+++++| | .. +++++||.+++|++++|+||||||||||+++|+|+++ ++|.|+++|.+.....
T Consensus 151 ~~~v~f-y--~~------~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~-------- 213 (330)
T 2pt7_A 151 YNLLDN-K--EQ------AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK-------- 213 (330)
T ss_dssp TTTSTT-H--HH------HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--------
T ss_pred cCchhh-H--HH------HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--------
Confidence 677777 6 22 5999999999999999999999999999999999999 8999999986311000
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra 227 (382)
. .+ ..+++++ + |||+||++||||
T Consensus 214 ~---~~-~~i~~~~---------------------------------------------------g--gg~~~r~~la~a 236 (330)
T 2pt7_A 214 H---HK-NYTQLFF---------------------------------------------------G--GNITSADCLKSC 236 (330)
T ss_dssp S---CS-SEEEEEC---------------------------------------------------B--TTBCHHHHHHHH
T ss_pred c---ch-hEEEEEe---------------------------------------------------C--CChhHHHHHHHH
Confidence 0 00 0222211 0 999999999999
Q ss_pred ehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 228 VSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 228 L~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|.++|++|++||.-+ .++.+.|+.+ ...+.|+|++||+ .+ +...+|+++++.+
T Consensus 237 L~~~p~ilildE~~~----~e~~~~l~~~---~~g~~tvi~t~H~--~~-~~~~~dri~~l~~ 289 (330)
T 2pt7_A 237 LRMRPDRIILGELRS----SEAYDFYNVL---CSGHKGTLTTLHA--GS-SEEAFIRLANMSS 289 (330)
T ss_dssp TTSCCSEEEECCCCS----THHHHHHHHH---HTTCCCEEEEEEC--SS-HHHHHHHHHHHHH
T ss_pred hhhCCCEEEEcCCCh----HHHHHHHHHH---hcCCCEEEEEEcc--cH-HHHHhhhheehhc
Confidence 999999999999222 3466777776 2223589999995 44 5667899888875
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-22 Score=195.76 Aligned_cols=158 Identities=11% Similarity=-0.031 Sum_probs=120.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhH-hhhccceeeEeCCCCChhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVM-RSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~-r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
+|++++|+||||||||||+++|+|+++ ++|+|.++|.++..... ..++..+ ++..++|++|++.++|..++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a-----~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAG-----GTQLSEWGKRLSIPVIQGPEGTDSAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTT-----THHHHHHHHHHTCCEECCCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhH-----HHHHHHHHHhcCceEEEeCCCCCHHHHHHH
Confidence 699999999999999999999999999 89999999998653221 1222223 1237999999999999999999
Q ss_pred hHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhhcc
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFS 254 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~ 254 (382)
|+..... .+ . ...+++.+|+.+.. .+.+.+|| +||++||||++.+|+.++| .||+.+...+++.++
T Consensus 176 ~v~~~~~---~~--~---d~~llDt~G~~~~~-~~~~~eLs---~~r~~iaRal~~~P~~~lL--vLDa~t~~~~~~~~~ 241 (304)
T 1rj9_A 176 AVQAMKA---RG--Y---DLLFVDTAGRLHTK-HNLMEELK---KVKRAIAKADPEEPKEVWL--VLDAVTGQNGLEQAK 241 (304)
T ss_dssp HHHHHHH---HT--C---SEEEECCCCCCTTC-HHHHHHHH---HHHHHHHHHCTTCCSEEEE--EEETTBCTHHHHHHH
T ss_pred HHHHHHh---CC--C---CEEEecCCCCCCch-HHHHHHHH---HHHHHHHHhhcCCCCeEEE--EEcHHHHHHHHHHHH
Confidence 9865321 11 0 11245566665433 26677777 7999999999999996666 999999999999998
Q ss_pred CccccccCCCCeEEEecCCCC
Q 016817 255 APGLRKCNENPILILTHGDML 275 (382)
Q Consensus 255 ~l~~~~~~g~tiIiiTHd~~l 275 (382)
++. +..|.|+|++||+...
T Consensus 242 ~~~--~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 242 KFH--EAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHH--HHHCCSEEEEECTTSS
T ss_pred HHH--HHcCCcEEEEECCccc
Confidence 873 4458999999997443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-22 Score=200.17 Aligned_cols=200 Identities=10% Similarity=0.057 Sum_probs=132.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++++++.|+.+.+ +|+++ |+|.+|++++|+||||||||||+++|+|+.. +.|.|.+.|++..+.....
T Consensus 43 ~~~i~~~~l~~~~~tg~~-----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVR-----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFL 116 (347)
T ss_dssp SCSTTCCCCCSEECCSCH-----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHH
T ss_pred CCCeeecccceecCCCCE-----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHH
Confidence 358999999999974321 69999 9999999999999999999999999999999 8999999887421110000
Q ss_pred eehhhhhhhHhhhccceeeEeCCC-CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRG-FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.. ... ..++ +.+.+++|...- ..+.++..+....+..+.. .-.+++. +. ..+..||+|| ||
T Consensus 117 ~~-~~~-~~~~-~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~------~~~~vl~-------~l-d~~~~lS~g~-r~ 178 (347)
T 2obl_A 117 AL-LPQ-STLS-KCVLVVTTSDRPALERMKAAFTATTIAEYFRD------QGKNVLL-------MM-DSVTRYARAA-RD 178 (347)
T ss_dssp TT-SCH-HHHT-TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT------TTCEEEE-------EE-ETHHHHHHHH-HH
T ss_pred Hh-hhh-hhhh-ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh------ccccHHH-------HH-hhHHHHHHHH-HH
Confidence 00 000 1123 367787774311 1112222222111111100 0011111 12 4578999999 99
Q ss_pred cceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccc-cCCC-----CeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 222 VDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRK-CNEN-----PILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~-~~g~-----tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
|++| +.+|++ -+++||.....+.++++++. + +.|. ||+++|||++ ..+||+++++.+ +.
T Consensus 179 v~la---l~~p~~---t~Gldp~~~~~l~~ller~~--~~~~GsiT~~~tVl~~thdl~----~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 179 VGLA---SGEPDV---RGGFPPSVFSSLPKLLERAG--PAPKGSITAIYTVLLESDNVN----DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp HHHH---TTCCCC---BTTBCHHHHHHHHHHHTTCE--ECSSSEEEEEEEEECCSSCCC----CHHHHHHHHHCSEEEEB
T ss_pred HHHH---cCCCCc---ccCCCHHHHHHHHHHHHHHh--CCCCCCeeeEEEEEEeCCCCC----ChhhhheEEeeCcEEEE
Confidence 9999 577777 22999999999999999983 3 4577 9999999765 457888888876 44
Q ss_pred cccccce
Q 016817 293 VSEISGV 299 (382)
Q Consensus 293 ~~~~~~v 299 (382)
.+...+.
T Consensus 247 ~~~l~~~ 253 (347)
T 2obl_A 247 TRELAEE 253 (347)
T ss_dssp CHHHHTT
T ss_pred eCCHHHc
Confidence 4444333
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-21 Score=213.94 Aligned_cols=163 Identities=10% Similarity=-0.011 Sum_probs=116.6
Q ss_pred CchhHHHH-----HhhhcccCCeeeecCCcccCCCCCCc-------eeeeeeecccCCCchhHHHHHHHhhcccceeeeE
Q 016817 64 DGLNELRH-----KFLSYRSGDFWIPIGGIQKGGMDIPP-------VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFA 131 (382)
Q Consensus 64 ~~~i~i~n-----vs~~y~~~~~~v~~~vL~~isl~i~~-------Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~ 131 (382)
.++|+++| |++.|.++. . +++|++|++++ |++++|+||||||||||||+| |++..
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~-~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------- 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDD-F----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------- 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCC-C----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------
T ss_pred CceEEEEeccccEEEEEecCCc-e----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------
Confidence 35789999 999984332 1 69999999987 999999999999999999999 98741
Q ss_pred eecCCCcccceeehhhhhhhHhhhccc-eeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccc
Q 016817 132 QTSSGNSSHTITMYMEEHNVMRSLQSG-FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 132 G~~i~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
. .++| ||||++. .+++.+++ +..+|+.+.+. +.
T Consensus 815 ---------------------~-aqiG~~Vpq~~~---~l~v~d~I--------------------~~rig~~d~~~-~~ 848 (1022)
T 2o8b_B 815 ---------------------M-AQMGCYVPAEVC---RLTPIDRV--------------------FTRLGASDRIM-SG 848 (1022)
T ss_dssp ---------------------H-HTTTCCEESSEE---EECCCSBE--------------------EEECC---------
T ss_pred ---------------------H-hheeEEeccCcC---CCCHHHHH--------------------HHHcCCHHHHh-hc
Confidence 1 1566 9999752 35555444 22345554444 55
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcc-hhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPL-DATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~-~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
.+++|+++++ +++|++++.+|+++|||| |+|+... ..++.+|+.+. ++.|.++|++|||+++ +..+++++.
T Consensus 849 ~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~--~~~g~~vl~~TH~~el--~~~~~d~~~ 923 (1022)
T 2o8b_B 849 ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA--ETIKCRTLFSTHYHSL--VEDYSQNVA 923 (1022)
T ss_dssp -CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH--HTSCCEEEEECCCHHH--HHHTSSCSS
T ss_pred hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH--hcCCCEEEEEeCCHHH--HHHhCCcce
Confidence 6778888775 999999999999999999 8999874 55788888873 3348999999997766 888899888
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
++++
T Consensus 924 v~~g 927 (1022)
T 2o8b_B 924 VRLG 927 (1022)
T ss_dssp EEEE
T ss_pred eecC
Confidence 8765
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-20 Score=174.50 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=99.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecCCCcccce
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i~~~~~~~ 142 (382)
..++++++++. . +|+++| +++|++++|+||||||||||+++|+|+++ + +|+|.++|.++....
T Consensus 4 ~~~~l~~l~~~----~------vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~--- 68 (261)
T 2eyu_A 4 EIPEFKKLGLP----D------KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--- 68 (261)
T ss_dssp --CCGGGSSCC----T------HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC---
T ss_pred CCCChHHCCCH----H------HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec---
Confidence 35677787653 2 599999 89999999999999999999999999998 6 999999997432100
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
+ ..+++++|. .+|+.. ..| |+
T Consensus 69 ----------~-~~~~~v~q~-----------------------------------~~gl~~-------~~l------~~ 89 (261)
T 2eyu_A 69 ----------K-HKKSIVNQR-----------------------------------EVGEDT-------KSF------AD 89 (261)
T ss_dssp ----------C-CSSSEEEEE-----------------------------------EBTTTB-------SCH------HH
T ss_pred ----------C-CcceeeeHH-----------------------------------HhCCCH-------HHH------HH
Confidence 0 012222221 122221 112 89
Q ss_pred ceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+||+||..+|++|++||--|+.+...+ ++.. +.|.+|+++||+.+ +..++++++.|.
T Consensus 90 ~la~aL~~~p~illlDEp~D~~~~~~~---l~~~----~~g~~vl~t~H~~~---~~~~~dri~~l~ 146 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMRDLETVETA---LRAA----ETGHLVFGTLHTNT---AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHCCSEEEESCCCSHHHHHHH---HHHH----HTTCEEEEEECCSS---HHHHHHHHHHTS
T ss_pred HHHHHHhhCCCEEEeCCCCCHHHHHHH---HHHH----ccCCEEEEEeCcch---HHHHHHHHhhhc
Confidence 999999999999999993377665443 3332 25899999999644 456788888775
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-20 Score=170.16 Aligned_cols=141 Identities=16% Similarity=0.018 Sum_probs=106.2
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC--Chhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF--NYNRV 172 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~--~~~tv 172 (382)
.++|+++||+||||||||||+++|+|++.+ .++|++|++.++ ..+++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------------------~i~~v~~d~~~~~~~~~~~ 51 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------------------RVALLPMDHYYKDLGHLPL 51 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------------------GEEEEEGGGCBCCCTTSCH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------------------CeEEEecCccccCcccccH
Confidence 578999999999999999999999998642 256777776655 34566
Q ss_pred hhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCcccee----eecceeeeehhHHHHHHHHh---c----
Q 016817 173 HEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL----RRVDFAMVVSNIAEIYKALK---A---- 240 (382)
Q Consensus 173 ~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk----QRvaIAraL~~~P~iLLLDE---~---- 240 (382)
.++.... +. ......+.+.++++.+++.+.+. +++..+|+||+ ||+++|++++.+|+++++|| +
T Consensus 52 ~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~ 127 (211)
T 3asz_A 52 EERLRVN---YDHPDAFDLALYLEHAQALLRGLPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDL 127 (211)
T ss_dssp HHHHHSC---TTSGGGBCHHHHHHHHHHHHTTCCEE-ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSE
T ss_pred HHhcCCC---CCChhhhhHHHHHHHHHHHHcCCCcC-CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCE
Confidence 6654321 11 11122244556677788876665 77889999974 79999999999999999999 5
Q ss_pred ---CCCCcchhhhhhccCccccccCCCCeEEEecC
Q 016817 241 ---GDSKPLDATKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 241 ---LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
||+.....+.+.+.+.. ++.|.|+++++|+
T Consensus 128 ~i~ld~~~~~~~~r~l~r~~--~~~g~t~~~~~~~ 160 (211)
T 3asz_A 128 KVFVDADADERFIRRLKRDV--LERGRSLEGVVAQ 160 (211)
T ss_dssp EEEEECCHHHHHHHHHHHHH--HHSCCCHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH--HHhCCCHHHHHHH
Confidence 89999999999888752 3468999999993
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-21 Score=182.12 Aligned_cols=178 Identities=16% Similarity=0.068 Sum_probs=114.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+|+++++.+++|++++|+||||||||||++.|+|... .+| .|.+.+.+.. ..+ ++. ++..++++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~---------~~~---~~~-r~~~~~~~~ 90 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES---------VEE---TAE-DLIGLHNRV 90 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC---------HHH---HHH-HHHHHHTTC
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC---------HHH---HHH-HHHHHHcCC
Confidence 6999999999999999999999999999999999998 668 7876654321 111 222 333333332
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce-eeecceeeeehhHHHHHHHHh--c-
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV-LRRVDFAMVVSNIAEIYKALK--A- 240 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq-kQRvaIAraL~~~P~iLLLDE--~- 240 (382)
. .+..+++.... +. .....+.+.++++..++. +. ..+..+|.+| +||+. |+++..+|++||+|| .
T Consensus 91 ~----~~~~~~l~~~~--~~-~~~~~~~~~~~l~~~~l~--i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 91 R----LRQSDSLKREI--IE-NGKFDQWFDELFGNDTFH--LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp C----GGGCHHHHHHH--HH-HTHHHHHHHHHHSSSCEE--EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred C----hhhccccccCC--CC-HHHHHHHHHHHhccCCEE--EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 1 12222332111 00 000111222333332332 22 3456788888 77777 999999999999999 3
Q ss_pred ------CCC-CcchhhhhhccCccccccCCCCeEEEecCCCCC--------------------hhhhhhhhhhhhhh
Q 016817 241 ------GDS-KPLDATKRLFSAPGLRKCNENPILILTHGDMLS--------------------TEERLDARLKICEY 290 (382)
Q Consensus 241 ------LD~-~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~--------------------~~~~~~d~v~ll~~ 290 (382)
+|. .....+.+.|++++ ++.|+|||++||+.+.+ .+..+||+|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la--~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~ 234 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFA--KSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (296)
T ss_dssp ---------CHHHHHHHHHHHHHH--HHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--HHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec
Confidence 344 44567888888884 45699999999985322 47788999999975
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-21 Score=183.03 Aligned_cols=161 Identities=11% Similarity=-0.045 Sum_probs=84.9
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh-hc-ccceeeeEeecCCCcccceeehhh
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl-~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
+||++.|+... ++++++|+| +|+||||||||||+++|+|. .. ++| |.++|.++... .
T Consensus 2 ~~l~~~~~~~~------~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t--------~ 60 (301)
T 2qnr_A 2 SNLPNQVHRKS------VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT--------V 60 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECCEE------EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc--------c
Confidence 57889996543 699999987 99999999999999999997 55 788 88888754210 0
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra 227 (382)
-+ ..+++++|...++..++++++..+.... ...+....+.+. +.+.. ++++.++|||||||+.+|||
T Consensus 61 ----~~-~~~~~~~q~~~~~~~ltv~Dt~g~~~~~-----~~~e~~~~l~~~--l~~~~-~~~~~~~sgg~rqrv~~ara 127 (301)
T 2qnr_A 61 ----QI-EASTVEIEERGVKLRLTVVDTPGYGDAI-----NCRDCFKTIISY--IDEQF-ERYLHDESGLNRRHIIDNRV 127 (301)
T ss_dssp ---------CEEEEC---CCEEEEEEEEC----------------CTTHHHH--HHHHH-HHHHHHHTSSCCTTCCCCCC
T ss_pred ----eE-eeEEEEecCCCcccCcchhhhhhhhhhc-----CcHHHHHHHHHH--HHHHH-HHHHHHhCHHhhhhhhhhhh
Confidence 01 2688999987777788999887543211 011111111121 23333 37889999999999999999
Q ss_pred ehhHHHHHHHHh----cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 228 VSNIAEIYKALK----AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 228 L~~~P~iLLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
++ +|++|| +||+... +.++++. .+.+.++|+.+||+.
T Consensus 128 ~~----ll~ldePt~~~Ld~~~~----~~l~~l~--~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 128 HC----CFYFISPFGHGLKPLDV----AFMKAIH--NKVNIVPVIAKADTL 168 (301)
T ss_dssp CE----EEEEECSSSSSCCHHHH----HHHHHHT--TTSCEEEEECCGGGS
T ss_pred hh----eeeeecCcccCCCHHHH----HHHHHHH--hcCCEEEEEEeCCCC
Confidence 97 889999 4998763 4555542 234789999999764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-19 Score=191.46 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=107.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccC----------CCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEe
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKG----------GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQ 132 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~i----------sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G 132 (382)
..++++|+++.|+.+.+++ |+.+ +|+++. +||+||||||||||+++|+|+.. ++|.|+++|
T Consensus 9 ~~i~~~~l~~~~~~~~r~l----l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g 81 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPC----IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP 81 (608)
T ss_dssp -----------CHHHHHHH----HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSC
T ss_pred chhhhhhhhHHHHHHHHHH----HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcC
Confidence 3577888888886432221 3322 466664 99999999999999999999974 599999999
Q ss_pred ecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccC
Q 016817 133 TSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
.++.... ......++. .+||+||++.+++..+|.+|+......... .
T Consensus 82 ~~i~~~~------~~~~~~~~~-~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~-----------------~--------- 128 (608)
T 3szr_A 82 LVLKLKK------LVNEDKWRG-KVSYQDYEIEISDASEVEKEINKAQNAIAG-----------------E--------- 128 (608)
T ss_dssp EEEEEEE------CSSSSCCEE-EESCC---CCCCCHHHHHTTHHHHHHHHHC-----------------S---------
T ss_pred EEEEEec------CCcccccee-EEeeecccccCCCHHHHHHHHHHHHHHhcC-----------------C---------
Confidence 8642110 011112343 899999999999999999999764322110 0
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---------cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---------AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---------~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
-.+..++++.++.+....|+++|+|| +||+..+..+.++++++. .+..+.+++++|||++.
T Consensus 129 -~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l-~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 129 -GMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYI-QRQETISLVVVPSNVDI 198 (608)
T ss_dssp -SSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHT-TSSSCCEEEEEESSSCT
T ss_pred -ccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHH-hcCCCCceEEEeccchh
Confidence 01223467788888888999999999 689999999999999863 24457889999998776
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-19 Score=174.53 Aligned_cols=78 Identities=5% Similarity=-0.040 Sum_probs=66.9
Q ss_pred cccccCCCccceee------ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCCh
Q 016817 207 EIDDLKSSPKYVLR------RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLST 277 (382)
Q Consensus 207 ~~~~~~~LSGGqkQ------RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~ 277 (382)
.++++.+||||||| |+++|++|+.+|++||||| +||+..+..+.+.|+++ .+.|.|||+||||.+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~---~~~~~~vi~~sH~~~--- 315 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY---LKKIPQVILVSHDEE--- 315 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHT---GGGSSEEEEEESCGG---
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEEChHH---
Confidence 34889999999999 6788888889999999999 99999999999999987 335789999999744
Q ss_pred hhhhhhhhhhhhh
Q 016817 278 EERLDARLKICEY 290 (382)
Q Consensus 278 ~~~~~d~v~ll~~ 290 (382)
+..+||+++.++.
T Consensus 316 ~~~~~d~~~~l~~ 328 (339)
T 3qkt_A 316 LKDAADHVIRISL 328 (339)
T ss_dssp GGGGCSEEEEEEE
T ss_pred HHHhCCEEEEEEe
Confidence 4567888888763
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-20 Score=188.69 Aligned_cols=168 Identities=13% Similarity=-0.015 Sum_probs=118.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccC-CCCCCceeeeeeecccCCCchhHHHHHHHhhcccce--eeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKG-GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGL--VLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~--I~i~G~~i~~~~~~~ 142 (382)
.+++++++..|+. |+.+ +..+++|++++|+||||||||||+++++|+....|+ +++.+++
T Consensus 257 ~~~~~~l~~g~~~---------ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee-------- 319 (525)
T 1tf7_A 257 RSSNVRVSSGVVR---------LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE-------- 319 (525)
T ss_dssp CCCCCEECCSCHH---------HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS--------
T ss_pred ccccceeecChHH---------HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC--------
Confidence 3456666665532 3332 559999999999999999999999999999885464 3444432
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
+ ...+..+.. .+ +.. ..+ +...|+.... +.+|.+|||||+||+
T Consensus 320 ---------------------~----~~~l~~~~~----~~--g~~----~~~-~~~~g~~~~~-~~~p~~LS~g~~q~~ 362 (525)
T 1tf7_A 320 ---------------------S----RAQLLRNAY----SW--GMD----FEE-MERQNLLKIV-CAYPESAGLEDHLQI 362 (525)
T ss_dssp ---------------------C----HHHHHHHHH----TT--SCC----HHH-HHHTTSEEEC-CCCGGGSCHHHHHHH
T ss_pred ---------------------C----HHHHHHHHH----Hc--CCC----HHH-HHhCCCEEEE-EeccccCCHHHHHHH
Confidence 1 001111110 00 000 000 1112333333 378899999999999
Q ss_pred ceeeeehhHHHHHHHHh--cCCCC-----cchhhhhhccCccccccCCCCeEEEecCCCC--------Chhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK--AGDSK-----PLDATKRLFSAPGLRKCNENPILILTHGDML--------STEERLDARLKI 287 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE--~LD~~-----~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l--------~~~~~~~d~v~l 287 (382)
++|+++..+|++||+|- +||+. .+..+.++++.+ ++.|.|+|+|||+... ..+..+||+|++
T Consensus 363 ~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l---~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 363 IKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYA---KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHH---HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHH---HhCCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999 899999999987 4579999999998710 236778999998
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|+.
T Consensus 440 L~~ 442 (525)
T 1tf7_A 440 LQY 442 (525)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-19 Score=157.46 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=106.5
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|++++|+||||||||||+++|++ +.+|.+.++|.++.. ....|+++|....++..++++++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINH----------------MVVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHT----------------TCCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhh----------------hhccccccCccchhHHHHHHHHHH
Confidence 78999999999999999999987 467889999864311 014677777654445568888886
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccCCC--ccceeeecceee------eehhHHHHHHHHhcCCCCcchhh
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSS--PKYVLRRVDFAM------VVSNIAEIYKALKAGDSKPLDAT 249 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L--SGGqkQRvaIAr------aL~~~P~iLLLDE~LD~~~~~~i 249 (382)
.....+... ... .+++.+... ... +...++ |+|++|++.++. +++.+|+...+|+++|+.....
T Consensus 64 ~~~~~~~~~--~~~---~ild~~~~~-~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~- 135 (189)
T 2bdt_A 64 DLTVNFLLA--QND---VVLDYIAFP-DEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL- 135 (189)
T ss_dssp HHHHHHHHT--TCE---EEEESCCCH-HHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-
T ss_pred HHHHHHHhc--CCc---EEEeeccCH-HHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-
Confidence 654322111 111 122222111 111 222345 999999999998 7778887777788999988888
Q ss_pred hhhccCccccccCCCCeEEEecCCC-CChhhhhhhhhh
Q 016817 250 KRLFSAPGLRKCNENPILILTHGDM-LSTEERLDARLK 286 (382)
Q Consensus 250 ~~~l~~l~~~~~~g~tiIiiTHd~~-l~~~~~~~d~v~ 286 (382)
++.+..+ .+.+.++|.+|| . ++++.++|++|+
T Consensus 136 ~~~~~~~---~~~~~~ii~tsh--~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 136 VEEFESK---GIDERYFYNTSH--LQPTNLNDIVKNLK 168 (189)
T ss_dssp HHHHHHT---TCCTTSEEECSS--SCGGGHHHHHHHHH
T ss_pred HHHHhhc---CCCccEEEeCCC--CChhhHHHHHHHHh
Confidence 8888776 345789999999 4 455999999998
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-18 Score=152.25 Aligned_cols=116 Identities=16% Similarity=0.035 Sum_probs=84.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
++.+++++.|+... +++++||+|++|++++|+||||||||||+|+|+|+++++|+|.++|.++... +
T Consensus 8 ~~~~~~~~~~g~~~------~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~------~- 74 (158)
T 1htw_A 8 IPDEFSMLRFGKKF------AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEE------Y- 74 (158)
T ss_dssp ECSHHHHHHHHHHH------HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEE------E-
T ss_pred cCCHHHHHHHHHHH------HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeee------c-
Confidence 44578889996432 6999999999999999999999999999999999997789999999865310 0
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccc
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN 204 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 204 (382)
. .-.+++|++.+| .+|+.+|+.+....-.........++.+++..++.+
T Consensus 75 ------~--~~~~~~q~~~l~-~ltv~e~l~~~g~~~~~~~~~~~~ve~~~~~~~l~~ 123 (158)
T 1htw_A 75 ------N--IAGKMIYHFDLY-RLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILP 123 (158)
T ss_dssp ------E--ETTEEEEEEECT-TCSCTTHHHHSTHHHHHSSSCEEEEESGGGGTTTSC
T ss_pred ------c--CCCcceeccccc-cCCcHHHHHHcChHhhcCCCCEEEEECcccccCCCC
Confidence 0 113799999888 799999996543211111122344555566666654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-19 Score=158.72 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=93.8
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|++++|+||||||||||+++|+|+++++| |.++|.++... ..++ +.+||++|+. ... .+++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~-----------~~~~-~~ig~~~~~~--~g~---~~~l~ 62 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEV-----------RQGG-RRIGFDVVTL--SGT---RGPLS 62 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEE-----------ETTS-SEEEEEEEET--TSC---EEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchh-----------Hhhh-ceEEEEEEec--ccc---eehhh
Confidence 78999999999999999999999998779 99999865211 1133 3899999985 221 12221
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccCCCccceeeec-ceee---eehhHHHHHHHHh--cCCCCcchhhhh
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV-DFAM---VVSNIAEIYKALK--AGDSKPLDATKR 251 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv-aIAr---aL~~~P~iLLLDE--~LD~~~~~~i~~ 251 (382)
. +...... ........ ++...+|+|||+++ ++++ |++.+|++||+|| .++.... .+++
T Consensus 63 ~----~~~~~~~----------~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~-~~~~ 126 (189)
T 2i3b_A 63 R----VGLEPPP----------GKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ-LFIQ 126 (189)
T ss_dssp E----CCCCCCS----------SSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCS-HHHH
T ss_pred c----ccccCCc----------cccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccH-HHHH
Confidence 0 0000000 00011222 55667999999998 5565 7899999999999 4432221 2445
Q ss_pred hccCccccccCCCCeEE--Ee--cCCCCChhhhhhhhhhhhhh
Q 016817 252 LFSAPGLRKCNENPILI--LT--HGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 252 ~l~~l~~~~~~g~tiIi--iT--Hd~~l~~~~~~~d~v~ll~~ 290 (382)
.|.++. . ...++|+ ++ ||... .+.++|..+++
T Consensus 127 ~l~~~l--~-~~~~~ilgti~vsh~~~~----~~vd~i~~~~~ 162 (189)
T 2i3b_A 127 AVRQTL--S-TPGTIILGTIPVPKGKPL----ALVEEIRNRKD 162 (189)
T ss_dssp HHHHHH--H-CSSCCEEEECCCCCSSCC----TTHHHHHTTCC
T ss_pred HHHHHH--h-CCCcEEEEEeecCCCCch----HHHHHHeecCC
Confidence 555542 1 2345554 33 95432 45666766654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-19 Score=158.53 Aligned_cols=157 Identities=11% Similarity=-0.001 Sum_probs=103.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
.+++|++++|+||||||||||+++|+|. ...|.|.++|.++..... .+ ..++|++|+.. +..++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~-----------~~-~~~~~~~~~~~--~~~~v~ 69 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIK-----------HG-RIDPWLPQSHQ--QNRMIM 69 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCC-----------SS-CCCTTSSSHHH--HHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhh-----------cc-cccCCccchhh--hhHHHH
Confidence 5789999999999999999999999997 568999998864321100 01 24688888653 457888
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccc-ccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhh
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE-IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRL 252 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~ 252 (382)
+|+.......... .....+..++..+++..... +..+..+|+|++||+++||++..+|+++ +|+.....+.+.
T Consensus 70 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l-----ld~~~~~~~~~~ 143 (191)
T 1zp6_A 70 QIAADVAGRYAKE-GYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL-----SDPLVVADLHSQ 143 (191)
T ss_dssp HHHHHHHHHHHHT-SCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc-----CCHHHHHHHHHH
Confidence 8886543222111 11122333444444442211 2456789999999999999999998766 466667778888
Q ss_pred ccCccccccCCCCeEEEecCCCC
Q 016817 253 FSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 253 l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+..+. ..+ .+++.|++...
T Consensus 144 ~~~l~---~~~-~~~i~t~~~~~ 162 (191)
T 1zp6_A 144 FADLG---AFE-HHVLPVSGKDT 162 (191)
T ss_dssp TTCCG---GGG-GGEEECTTCCT
T ss_pred HhccC---ccc-ccEEECCCCCH
Confidence 88762 223 45566664343
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-19 Score=179.07 Aligned_cols=168 Identities=17% Similarity=0.100 Sum_probs=117.5
Q ss_pred cccCCCCCCc--eeeeeeecccCCCchhHHHHHHHhhc-cc----ceeeeEe----ecCCCcccceeehhhhhhhHhhhc
Q 016817 88 IQKGGMDIPP--VITILLMGFSGSGKSSLVNLMYSVLS-RS----GLVLFAQ----TSSGNSSHTITMYMEEHNVMRSLQ 156 (382)
Q Consensus 88 L~~isl~i~~--Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~----G~I~i~G----~~i~~~~~~~~~~~~~~~~~r~~~ 156 (382)
.+.|+++|.+ |+.++|+||||||||||+++|+|+++ ++ |+|++++ .++ . ....+ + . .
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~------~~~~~---~-~-~ 225 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-A------MQYSD---Y-P-Q 225 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-S------SCTTT---H-H-H
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-c------CChhH---H-H-H
Confidence 6789999999 99999999999999999999999999 78 9998753 221 0 01111 2 2 4
Q ss_pred cceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh-hHHHHH
Q 016817 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS-NIAEIY 235 (382)
Q Consensus 157 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~-~~P~iL 235 (382)
|++++|++.+|. .++.+|+.+ ++ .+.. +..+..+|+|++||..+++++. .+|+++
T Consensus 226 I~~~~q~~~~~~-~t~~~nl~~---------------------~~-~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 226 MALGHQRYIDYA-VRHSHKIAF---------------------ID-TDFI-TTQAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHHHHHHHHHH-HHHCSSEEE---------------------ES-SCHH-HHHHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHHHHHHHHHH-HhccCCEEE---------------------Ee-CCch-HHHHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 777777654332 444444310 00 1111 2345567788888988887764 589999
Q ss_pred HHHh------------cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-cccccc
Q 016817 236 KALK------------AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY-LGVSEI 296 (382)
Q Consensus 236 LLDE------------~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~-~~~~~~ 296 (382)
+||| ++|+..+..+.+.|+++. ++.|.++|+++|. .+..++++++.+++. +..+..
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~--~~~~~~ililde~---~~~~r~~~~i~~i~~~l~~~~~ 350 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLL--DKYKVPYIEIESP---SYLDRYNQVKAVIEKVLNEEEI 350 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHH--HGGGCCCEEEECS---SHHHHHHHHHHHHHHHTSCCCC
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHH--HHcCCCEEEeCCC---CHHHHHHHHHHHHHHHhcccch
Confidence 9985 589999999999998873 3458999999983 347789999999988 544443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.4e-19 Score=189.50 Aligned_cols=87 Identities=10% Similarity=-0.068 Sum_probs=75.2
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEe
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILT 270 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT 270 (382)
.+..+||.....++++.+|||||+|||+||++|+.+| .+||||| +||+.....++++|+++ ++.|.|||+|+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L---~~~G~TVIvVe 438 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL---KRGGNSLFVVE 438 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH---HTTTCEEEEEC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH---HHcCCEEEEEc
Confidence 4567788744235999999999999999999999999 5999999 99999999999999998 55799999999
Q ss_pred cCCCCChhhhhhhhhhhh
Q 016817 271 HGDMLSTEERLDARLKIC 288 (382)
Q Consensus 271 Hd~~l~~~~~~~d~v~ll 288 (382)
||+++ +. .||+|++|
T Consensus 439 Hdl~~--l~-~aD~ii~l 453 (842)
T 2vf7_A 439 HDLDV--IR-RADWLVDV 453 (842)
T ss_dssp CCHHH--HT-TCSEEEEE
T ss_pred CCHHH--HH-hCCEEEEe
Confidence 97654 54 68999888
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-19 Score=191.24 Aligned_cols=138 Identities=8% Similarity=-0.052 Sum_probs=96.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+++|+||++++|++++|+||||||||||||+|+++.- . .| .+++++.
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g-------------------------------~~vpa~~ 710 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG-------------------------------SYVPAEE 710 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT-------------------------------CCBSSSE
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC-------------------------------ccccchh
Confidence 6899999999999999999999999999999987642 1 11 1222111
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
.. . ..+.+++..+|+.+.+. +.++++|+||+|++.|+++ +.+|+++|||| |+
T Consensus 711 ~~---i--------------------~~~d~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~Gl 765 (918)
T 3thx_B 711 AT---I--------------------GIVDGIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGT 765 (918)
T ss_dssp EE---E--------------------ECCSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTS
T ss_pred hh---h--------------------hHHHHHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCC
Confidence 00 0 01123445566665555 7788999999999999998 89999999999 99
Q ss_pred CCCcchhhh-hhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 242 DSKPLDATK-RLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 242 D~~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
|+.....+. .+++.+. ++.|.|+|++|||+++ + .++++.
T Consensus 766 D~~~~~~i~~~il~~L~--~~~g~tvl~vTH~~el--~-~l~~~~ 805 (918)
T 3thx_B 766 STHDGIAIAYATLEYFI--RDVKSLTLFVTHYPPV--C-ELEKNY 805 (918)
T ss_dssp CHHHHHHHHHHHHHHHH--HTTCCEEEEECSCGGG--G-GHHHHT
T ss_pred CHHHHHHHHHHHHHHHH--HhcCCeEEEEeCcHHH--H-HHHhhc
Confidence 999988887 6677662 3468999999998766 4 356654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-18 Score=185.87 Aligned_cols=141 Identities=10% Similarity=-0.012 Sum_probs=98.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+++|++|++++|++++|+||||||||||+|+++++.- ..| +|+|++.
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G-------------------------------~~vpa~~ 699 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG-------------------------------CFVPCES 699 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT-------------------------------CCBSEEE
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC-------------------------------Ccccccc
Confidence 6889999999999999999999999999999976532 122 2333331
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee--hhHHHHHHHHh---
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV--SNIAEIYKALK--- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL--~~~P~iLLLDE--- 239 (382)
..+ ..+.+++..+|+.+. ....+|+|+++++.+|+++ +.+|+++||||
T Consensus 700 ~~~-----------------------~~~d~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~ 752 (934)
T 3thx_A 700 AEV-----------------------SIVDCILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDELGR 752 (934)
T ss_dssp EEE-----------------------ECCSEEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSC
T ss_pred ccc-----------------------hHHHHHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCC
Confidence 100 011234455565533 3456777777777778777 89999999999
Q ss_pred cCCCCcchhh-hhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 AGDSKPLDAT-KRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~~~~~i-~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|+.....+ +.+++.+. ++.|.|+|++|||.++ + .+++++..+++
T Consensus 753 GlD~~~~~~i~~~il~~l~--~~~g~~vl~aTH~~el--~-~lad~~~~v~n 799 (934)
T 3thx_A 753 GTSTYDGFGLAWAISEYIA--TKIGAFCMFATHFHEL--T-ALANQIPTVNN 799 (934)
T ss_dssp SSCHHHHHHHHHHHHHHHH--HTTCCEEEEEESCGGG--G-GGGGTCTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHH--hcCCCEEEEEcCcHHH--H-HHhcccceeEe
Confidence 9999988887 66667662 3358999999997665 4 47888877776
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-18 Score=156.55 Aligned_cols=166 Identities=9% Similarity=-0.148 Sum_probs=110.8
Q ss_pred CcccCCC-CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGM-DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl-~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
.|+++.. .+++|++++|+||||||||||++.|++... ..|.|.+.+.+.. ..+..... ..+++.+|+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---------~~~~~~~~-~~~~~~~~~~ 80 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---------RDSIIRQA-KQFNWDFEEY 80 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---------HHHHHHHH-HHTTCCCGGG
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---------HHHHHHHH-HHhcchHHHH
Confidence 4888888 899999999999999999999999999887 7889988776321 11111111 1355544432
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHH--HHHHHh---
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAE--IYKALK--- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~--iLLLDE--- 239 (382)
... .+. .+.......+ .... ....|.++.++...+.+...+|+ +|++||
T Consensus 81 ~~~-~~~--------------------~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 81 IEK-KLI--------------------IIDALMKEKE-DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp BTT-TEE--------------------EEECCC-----CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred hhC-CEE--------------------EEeccccccC-ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 110 010 0111111111 1111 12348888888877777777899 999999
Q ss_pred cC--CCCcchhhhhhccCccccccCCCCeEEEecCCCC------Chhhhhhhhhhhhhh
Q 016817 240 AG--DSKPLDATKRLFSAPGLRKCNENPILILTHGDML------STEERLDARLKICEY 290 (382)
Q Consensus 240 ~L--D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l------~~~~~~~d~v~ll~~ 290 (382)
.+ |+.....+++.|++++ ++.|.|||++||+.+. ..+..+||++++++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~--~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVL--NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHH--HHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHH--HhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 45 9888899999999884 4568999999997732 337788999999976
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-19 Score=160.55 Aligned_cols=145 Identities=10% Similarity=0.000 Sum_probs=88.3
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-c--cc-----eeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--SG-----LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~--~G-----~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
-|++|++++|+||||||||||+++|+|+.. + +| .|++++.+.. +...+++++|+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~----------------~~~~i~~~~~~~~ 84 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----------------RPERIREIAQNRG 84 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC----------------CHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC----------------CHHHHHHHHHHcC
Confidence 688999999999999999999999999764 3 23 6666665310 0125667778776
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee-------hhHHHHHHHH
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV-------SNIAEIYKAL 238 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL-------~~~P~iLLLD 238 (382)
+++. ++.+|+.+.. .... +.+++.+..++++ ..+|+++++|
T Consensus 85 ~~~~-~~~~~~~~~~-----~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~llilD 132 (231)
T 4a74_A 85 LDPD-EVLKHIYVAR-----AFNS--------------------------NHQMLLVQQAEDKIKELLNTDRPVKLLIVD 132 (231)
T ss_dssp SCHH-HHHHTEEEEE-----CCSH--------------------------HHHHHHHHHHHHHHHHHTTSSSCEEEEEEE
T ss_pred CCHH-HHhhcEEEEe-----cCCh--------------------------HHHHHHHHHHHHHHHHhcccCCceeEEEEC
Confidence 6664 6666652110 0000 0011111111222 2478899999
Q ss_pred h---cCCCCc------------chhhhhhccCccccccCCCCeEEEec----CCCCChhhhhhhhhhhhhh
Q 016817 239 K---AGDSKP------------LDATKRLFSAPGLRKCNENPILILTH----GDMLSTEERLDARLKICEY 290 (382)
Q Consensus 239 E---~LD~~~------------~~~i~~~l~~l~~~~~~g~tiIiiTH----d~~l~~~~~~~d~v~ll~~ 290 (382)
| .+|+.. ...+++.|.+++ ++.|+|||+||| +... +..++|+++++++
T Consensus 133 e~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~--~~~g~tvi~vtH~~~~~g~~--~~~~~d~~l~l~~ 199 (231)
T 4a74_A 133 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA--NLYDIAVFVTNQVQANGGHI--LAHSATLRVYLRK 199 (231)
T ss_dssp TSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHH--HHHTCEEEEEEECC-----------CCSEEEEEEE
T ss_pred ChHHHhccccCCCcchhHHHHHHHHHHHHHHHHH--HHCCCeEEEEeecccCcchh--hHhhceEEEEEEe
Confidence 9 566632 226777777763 456999999999 3333 6677888888865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-17 Score=168.16 Aligned_cols=178 Identities=10% Similarity=0.066 Sum_probs=118.3
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhH-hhhccceeeEeCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVM-RSLQSGFCVYDSR 165 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~-r~~~ig~v~Q~~~ 165 (382)
-+++||++++|++++|+||||||||||+++|+|++. .+|+|.++|.++.... ...++..+ +++.++|++|++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~a-----a~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA-----AVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHH-----HHHHHHHHHHHHTCCEECCSTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchh-----hHHHHHHHHHhcCceEEecccC
Confidence 568999999999999999999999999999999999 8999999987653211 11122222 2248999999988
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh-hHHHHHHHHhcCCCC
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS-NIAEIYKALKAGDSK 244 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~-~~P~iLLLDE~LD~~ 244 (382)
+++..++++|+.+... .+. . .-+++.+|...... .++.+|| |++.++|++. ..|.-.+| -||+.
T Consensus 358 ~~p~~tV~e~l~~a~~---~~~---D--vVLIDTaGrl~~~~-~lm~EL~----kiv~iar~l~~~~P~evLL--vLDat 422 (503)
T 2yhs_A 358 ADSASVIFDAIQAAKA---RNI---D--VLIADTAGRLQNKS-HLMEELK----KIVRVMKKLDVEAPHEVML--TIDAS 422 (503)
T ss_dssp CCHHHHHHHHHHHHHH---TTC---S--EEEECCCCSCCCHH-HHHHHHH----HHHHHHHTTCTTCSSEEEE--EEEGG
T ss_pred cCHHHHHHHHHHHHHh---cCC---C--EEEEeCCCccchhh-hHHHHHH----HHHHHHHHhccCCCCeeEE--EecCc
Confidence 8888999999975431 111 1 11356666543222 3445665 7888888653 34531111 45555
Q ss_pred cchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 245 PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 245 ~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+....++.++.+. ...+.|.+++|| ++...+....+-++..
T Consensus 423 tGq~al~~ak~f~--~~~~itgvIlTK---LD~takgG~~lsi~~~ 463 (503)
T 2yhs_A 423 TGQNAVSQAKLFH--EAVGLTGITLTK---LDGTAKGGVIFSVADQ 463 (503)
T ss_dssp GTHHHHHHHHHHH--HHTCCSEEEEEC---GGGCSCCTHHHHHHHH
T ss_pred ccHHHHHHHHHHH--hhcCCCEEEEEc---CCCcccccHHHHHHHH
Confidence 5555566666652 345899999999 2234455566656543
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-18 Score=162.99 Aligned_cols=161 Identities=16% Similarity=0.072 Sum_probs=108.7
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh--------c-ccceeeeEeecCCCcccce-eehh-----hhhhhHhhhcccee--
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL--------S-RSGLVLFAQTSSGNSSHTI-TMYM-----EEHNVMRSLQSGFC-- 160 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~--------~-~~G~I~i~G~~i~~~~~~~-~~~~-----~~~~~~r~~~ig~v-- 160 (382)
=++++|+|+||||||||+|.|.|+. . +.|+|.+||.++....... .+.. .....++. .++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~-~l~~l~~ 82 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELED-ALLDLLD 82 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHH-HHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHH-HHHHHHh
Confidence 4689999999999999999999996 5 7999999999775432110 0000 00112333 57777
Q ss_pred -eEeCCCCChhhhhhhHHHHH-----hhh-h-cCccccccccccCccccccccccccccCCCccceeeecceeeeehhHH
Q 016817 161 -VYDSRGFNYNRVHEGLEELS-----SWM-S-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA 232 (382)
Q Consensus 161 -~Q~~~l~~~~tv~eni~~~~-----~~~-~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P 232 (382)
+|++.+++..++.||..... ..+ . ........+..++..+++.+... +. .+||+||+||+..+++++.+|
T Consensus 83 ~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~-~~-~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE-QM-NQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHH-HH-HHCHHHHHHHHTCSEEEEECT
T ss_pred HHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHH-HH-hhchHHHHHHHhCCEEEEECc
Confidence 67766655677777664210 011 0 01111234556677777765433 33 489999999999999999999
Q ss_pred HHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCC
Q 016817 233 EIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGD 273 (382)
Q Consensus 233 ~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~ 273 (382)
+++ ||. ..+.+.|+++ . .+.||+++||+.
T Consensus 161 dl~--de~------~~l~~~l~~l---~-~~~~ii~~sh~~ 189 (318)
T 1nij_A 161 DVA--GEA------EKLHERLARI---N-ARAPVYTVTHGD 189 (318)
T ss_dssp TTC--SCT------HHHHHHHHHH---C-SSSCEEECCSSC
T ss_pred ccC--CHH------HHHHHHHHHh---C-CCCeEEEecccC
Confidence 876 653 7888888887 2 578999999963
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-18 Score=169.88 Aligned_cols=71 Identities=11% Similarity=-0.145 Sum_probs=61.3
Q ss_pred ccccC-CCccceeeecceeeeeh---------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 208 IDDLK-SSPKYVLRRVDFAMVVS---------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 208 ~~~~~-~LSGGqkQRvaIAraL~---------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
++++. .||||||||++||++|+ .+|+|||||| +||+..+..+++.|.++ . .|+|++||+ +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~-----~-qt~i~~th~-~ 331 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-----P-QAIVTGTEL-A 331 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS-----S-EEEEEESSC-C
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc-----C-cEEEEEEec-c
Confidence 46676 79999999999999999 7999999999 99999999999999886 2 699999992 2
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
. .+++++++++
T Consensus 332 ~-----~~~~i~~l~~ 342 (359)
T 2o5v_A 332 P-----GAALTLRAQA 342 (359)
T ss_dssp T-----TCSEEEEEET
T ss_pred c-----cCCEEEEEEC
Confidence 1 6788887765
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-17 Score=143.70 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=66.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccc----eeeEeCCCCChh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG----FCVYDSRGFNYN 170 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig----~v~Q~~~l~~~~ 170 (382)
++++|+||||||||||+++|+|+++ + .|.|.++|.++.+... .....+|.+.+| ++.|++.+|-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~------~~~d~~r~~~ig~~~~~~~~~~~~~i~~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK------EGKDSWKIYNSGADVVIASPVKLAFIRR 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------------CHHHHHHHHTCEEEEECSSEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCc------cchhHHHHHhcCCceEEECCCcEEEEec
Confidence 5799999999999999999999998 6 8999999987543321 011224423577 677776554100
Q ss_pred hhhhhHHHHHhhhhcCccccccccccCcc-c-cccccccccccCCCccceeeecceeeeehhHHHHH
Q 016817 171 RVHEGLEELSSWMSEGVHHNQRCLRSDDC-A-LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIY 235 (382)
Q Consensus 171 tv~eni~~~~~~~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iL 235 (382)
. .+.. ...+.+.++. + +++. .....|||||+||++||||++.+|++.
T Consensus 77 ~-~~~~-------------~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 V-SEEE-------------GNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp C-CHHH-------------HTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred C-Chhh-------------hhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccC
Confidence 0 0000 0011111111 1 2221 222359999999999999999999874
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-17 Score=165.55 Aligned_cols=151 Identities=11% Similarity=0.017 Sum_probs=100.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.++++++++.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ ++|+|.+.|.++.......
T Consensus 143 ~~~l~~Lg~~~~~~~------~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~-- 212 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD------NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGI-- 212 (418)
T ss_dssp CCCGGGSCCCHHHHH------HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSS--
T ss_pred CCCHHHcCCCHHHHH------HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCc--
Confidence 567888888775432 58888 54 7899999999999999999999999998 8999999998763211000
Q ss_pred hhhhhhhHhhhccceee---------EeCCCC--C----hhhhhhhHHHHHhhhh--cC--ccccccccccCcccccccc
Q 016817 145 YMEEHNVMRSLQSGFCV---------YDSRGF--N----YNRVHEGLEELSSWMS--EG--VHHNQRCLRSDDCALMKND 205 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~---------Q~~~l~--~----~~tv~eni~~~~~~~~--~~--~~~~~~~~~~l~~~~L~~~ 205 (382)
.+ ..++. .+|+.| |++..+ + ..|+.+++........ .. ......+...+..+++...
T Consensus 213 --~q-~~v~~-~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 213 --GQ-TQVNP-RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp --EE-EECBG-GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred --ce-EEEcc-ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 00 00122 455555 877542 3 2678887765321100 00 0111122223556677643
Q ss_pred ccccccCCCccceeeecceeeeehhHHHHH
Q 016817 206 AEIDDLKSSPKYVLRRVDFAMVVSNIAEIY 235 (382)
Q Consensus 206 ~~~~~~~~LSGGqkQRvaIAraL~~~P~iL 235 (382)
..+.+|||||+|| |||+|+.+|++.
T Consensus 289 ---~~~~~LSgg~~QR--LaraL~~~p~~~ 313 (418)
T 1p9r_A 289 ---LISSSLLGVLAQR--LVRTLCPDCKEP 313 (418)
T ss_dssp ---HHHHHEEEEEEEE--EEEEECTTTCEE
T ss_pred ---HHHHHHHHHHHHH--hhhhhcCCCCcc
Confidence 4678999999999 999999999875
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-19 Score=159.35 Aligned_cols=175 Identities=9% Similarity=-0.015 Sum_probs=93.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh-----c-ccceeeeEee------
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-----S-RSGLVLFAQT------ 133 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~-----~-~~G~I~i~G~------ 133 (382)
+++++|++|.|+. . ++++ |.+++|..++|+|+||||||||+|.|+|.. . +.|.+.+.+.
T Consensus 3 ~l~~~~~~~~~~~-~------~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHFVMSA-P------DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG 73 (210)
T ss_dssp --------CEEEE-S------SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT
T ss_pred chhhhhhhheeec-C------CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC
Confidence 5899999999962 2 5888 999999999999999999999999999987 5 5787765432
Q ss_pred -cCCCcccce--eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccc
Q 016817 134 -SSGNSSHTI--TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 134 -~i~~~~~~~--~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
.+.+.+... .........+++ .+++++|....++...+..++.. .....++.+.++++..++...+-..+
T Consensus 74 ~~l~Dt~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 74 KRLVDLPGYGYAEVPEEMKRKWQR-ALGEYLEKRQSLQGLVVLMDIRH------PLKDLDQQMIEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp EEEEECCCCC------CCHHHHHH-HHHHHHHHCTTEEEEEEEEETTS------CCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEECcCCcccccCHHHHHHHHH-HHHHHHHhhhcccEEEEEEECCC------CCchhHHHHHHHHHHcCCCeEEEEec
Confidence 110000000 000000011111 22333332111111111111100 00000011222233334433221256
Q ss_pred cCCCccceeee-cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCc
Q 016817 211 LKSSPKYVLRR-VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAP 256 (382)
Q Consensus 211 ~~~LSGGqkQR-vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l 256 (382)
+..+|+||+|| +..|++++.+|+++++|| ++|+.+...+++.|.++
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 78899999999 899999999999888999 99999999999999887
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-17 Score=159.33 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=87.5
Q ss_pred CcccCCC-------CCCceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecCCCcccceeehhhhhhhHhhhcc
Q 016817 87 GIQKGGM-------DIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157 (382)
Q Consensus 87 vL~~isl-------~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~i 157 (382)
.|+++.+ .+.+|++++|+||||||||||+++|+|+++ + .|.|...+.++ +.. .+ ...
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~------------~~-~~~ 170 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV------------HE-SKK 170 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC------------CC-CSS
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh------------hh-ccc
Confidence 4777776 567888999999999999999999999998 5 56665444322 111 01 134
Q ss_pred ceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHH
Q 016817 158 GFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 158 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
+++.|........+ +. . +||+||.++|++|++
T Consensus 171 ~~v~q~~~~~~~~~----------------------------------~~-~-------------~La~aL~~~Pdvill 202 (356)
T 3jvv_A 171 CLVNQREVHRDTLG----------------------------------FS-E-------------ALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEEBTTTBSC----------------------------------HH-H-------------HHHHHTTSCCSEEEE
T ss_pred cceeeeeeccccCC----------------------------------HH-H-------------HHHHHhhhCcCEEec
Confidence 55555432111000 00 0 999999999999999
Q ss_pred HhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 238 LKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 238 DE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
||--|+++ .+.+.++ .+.|.|||+++|+.+. + .+++|++.|
T Consensus 203 DEp~d~e~----~~~~~~~---~~~G~~vl~t~H~~~~--~-~~~dRli~l 243 (356)
T 3jvv_A 203 GEMRDLET----IRLALTA---AETGHLVFGTLHTTSA--A-KTIDRVVDV 243 (356)
T ss_dssp SCCCSHHH----HHHHHHH---HHTTCEEEEEESCSSH--H-HHHHHHHHT
T ss_pred CCCCCHHH----HHHHHHH---HhcCCEEEEEEccChH--H-HHHHHHhhh
Confidence 99435433 3333333 2369999999996554 6 678888877
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-18 Score=181.72 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=91.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+++|+||+ |++++|+||||||||||+|+|+|+.. ..|.+.-. .+ ..+|+++|
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa--------------------~~-~~i~~v~~-- 621 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA--------------------EE-AHLPLFDG-- 621 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS--------------------SE-EEECCCSE--
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh--------------------hc-cceeeHHH--
Confidence 68899999 99999999999999999999999974 57765310 01 26788776
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee--hhHHHHHHHHh---
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV--SNIAEIYKALK--- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL--~~~P~iLLLDE--- 239 (382)
+|+.+++.+|+. ..+|+|++|++.+|+++ +.+|+++||||
T Consensus 622 -i~~~~~~~d~l~----------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 622 -IYTRIGASDDLA----------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp -EEEECCC----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred -hhccCCHHHHHH----------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 345455554441 23588999999999999 99999999999
Q ss_pred ---cCCCCcc-hhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 240 ---AGDSKPL-DATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 240 ---~LD~~~~-~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+||+... ..+.+.|.+ .|.|+|++|||.++
T Consensus 667 GTs~lD~~~~~~~i~~~L~~------~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE------RRAYTLFATHYFEL 700 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH------HTCEEEEECCCHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh------CCCEEEEEeCCHHH
Confidence 4787664 456666653 47899999997655
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-17 Score=153.14 Aligned_cols=130 Identities=13% Similarity=0.019 Sum_probs=83.0
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
++.-.-..++|++++|+||||||||||+++|+|+++ .+|.|.+.+++.... .+ ..++|+||++
T Consensus 6 ~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-------------e~-~gi~y~fq~~ 71 (219)
T 1s96_A 6 IHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-------------EV-HGEHYFFVNH 71 (219)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-------------CC-BTTTBEECCH
T ss_pred cccccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-------------cc-cCceEEECCH
Confidence 334455788999999999999999999999999987 379999888643210 12 3799999987
Q ss_pred CCCChhhh----hhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHhc
Q 016817 165 RGFNYNRV----HEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240 (382)
Q Consensus 165 ~l~~~~tv----~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~ 240 (382)
.+|+.+++ .|++.+. + .+.|-.+++ ++.++..++++|||
T Consensus 72 ~~f~~~~~~~~f~E~~~~~---------------------~-----------~~yg~~~~~---v~~~l~~G~illLD-- 114 (219)
T 1s96_A 72 DEFKEMISRDAFLEHAEVF---------------------G-----------NYYGTSREA---IEQVLATGVDVFLD-- 114 (219)
T ss_dssp HHHHHHHHTTCEEEEEEET---------------------T-----------EEEEEEHHH---HHHHHTTTCEEEEE--
T ss_pred HHHHHHHhcCHHHHHHHHH---------------------h-----------ccCCCCHHH---HHHHHhcCCeEEEE--
Confidence 66665554 2222100 0 000000111 12233346888998
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
||+.+...+.+.+. .+.||+++|||++.
T Consensus 115 LD~~~~~~i~~~l~-------~~~tI~i~th~~~~ 142 (219)
T 1s96_A 115 IDWQGAQQIRQKMP-------HARSIFILPPSKIE 142 (219)
T ss_dssp CCHHHHHHHHHHCT-------TCEEEEEECSSHHH
T ss_pred ECHHHHHHHHHHcc-------CCEEEEEECCCHHH
Confidence 99999999998875 36899999996544
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.1e-16 Score=149.82 Aligned_cols=149 Identities=15% Similarity=0.086 Sum_probs=103.1
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhh-hccceeeEeCCCCChhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRS-LQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~-~~ig~v~Q~~~l~~~~t 171 (382)
..++|++++|+||||||||||++.|+|+++ .+|+|.+.|.++..... ..+...++. ..+.+++|.+.++|..+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a-----~eql~~~~~~~gv~~v~q~~~~~p~~~ 199 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGA-----IEQLEEHAKRIGVKVIKHSYGADPAAV 199 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTH-----HHHHHHHHHHTTCEEECCCTTCCHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccch-----HHHHHHHHHHcCceEEeccccCCHHHH
Confidence 457899999999999999999999999999 89999999998754321 122332332 13448899999999999
Q ss_pred hhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchh
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDA 248 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~ 248 (382)
+++|+...... . ... -.++..|+.+.. ...+.+||+ ++|++. .|| .||+.+...
T Consensus 200 v~e~l~~~~~~---~---~d~--vliDtaG~~~~~-~~l~~eL~~-------i~ral~-------~de~llvLDa~t~~~ 256 (328)
T 3e70_C 200 AYDAIQHAKAR---G---IDV--VLIDTAGRSETN-RNLMDEMKK-------IARVTK-------PNLVIFVGDALAGNA 256 (328)
T ss_dssp HHHHHHHHHHH---T---CSE--EEEEECCSCCTT-TCHHHHHHH-------HHHHHC-------CSEEEEEEEGGGTTH
T ss_pred HHHHHHHHHhc---c---chh--hHHhhccchhHH-HHHHHHHHH-------HHHHhc-------CCCCEEEEecHHHHH
Confidence 99999654210 0 011 124445554322 255566664 444444 566 677777778
Q ss_pred hhhhccCccccccCCCCeEEEecC
Q 016817 249 TKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 249 i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
+.+.++.+. +..+.|+|++||.
T Consensus 257 ~~~~~~~~~--~~~~it~iilTKl 278 (328)
T 3e70_C 257 IVEQARQFN--EAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHH--HHSCCCEEEEECG
T ss_pred HHHHHHHHH--HhcCCCEEEEeCc
Confidence 888888772 4568999999993
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-18 Score=185.14 Aligned_cols=89 Identities=8% Similarity=-0.007 Sum_probs=77.3
Q ss_pred cccCccccccccccccccCCCccceeeecceeeeehhHHH--HHHHHh---cCCCCcchhhhhhccCccccccCCCCeEE
Q 016817 194 LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAE--IYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILI 268 (382)
Q Consensus 194 ~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~--iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIi 268 (382)
.+.+..+||.....++++.+|||||||||+|||||+++|+ +||||| +||+.....++++|+++ ++.|.|||+
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L---~~~G~Tviv 521 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL---RDLGNTVIV 521 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT---TTTTCEEEE
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH---HhcCCEEEE
Confidence 3467788987543459999999999999999999999887 999999 99999999999999998 456999999
Q ss_pred EecCCCCChhhhhhhhhhhh
Q 016817 269 LTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 269 iTHd~~l~~~~~~~d~v~ll 288 (382)
||||++. +.. ||+|++|
T Consensus 522 VtHd~~~--~~~-aD~ii~l 538 (916)
T 3pih_A 522 VEHDEEV--IRN-ADHIIDI 538 (916)
T ss_dssp ECCCHHH--HHT-CSEEEEE
T ss_pred EeCCHHH--HHh-CCEEEEE
Confidence 9997665 654 8888888
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-16 Score=151.98 Aligned_cols=150 Identities=11% Similarity=0.000 Sum_probs=97.3
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
.+++|++++|+||||||||||++.+++... .|.+.+ |.+... ...+.|+..+.. ...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~-g~~~~~----------------~~~v~~~~~e~~---~~~~~ 84 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLL-EVGELP----------------TGPVIYLPAEDP---PTAIH 84 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTT-CCCCCC----------------CCCEEEEESSSC---HHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcC-CCccCC----------------CccEEEEECCCC---HHHHH
Confidence 578999999999999999999999999654 566644 442210 013455443321 11111
Q ss_pred hhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-----cCCCCcc--
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-----AGDSKPL-- 246 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-----~LD~~~~-- 246 (382)
..+. .++.. .......++++.+++.+.. ++.+..||+||+|++ ++++.+|+++++|| ++|+...
T Consensus 85 ~r~~----~~g~~-~~~~~~~~~~~~l~l~~~~-~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~ 155 (279)
T 1nlf_A 85 HRLH----ALGAH-LSAEERQAVADGLLIQPLI-GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGP 155 (279)
T ss_dssp HHHH----HHHTT-SCHHHHHHHHHHEEECCCT-TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHH
T ss_pred HHHH----HHHhh-cChhhhhhccCceEEeecC-CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHH
Confidence 1111 11111 1112233445666776554 478999999998865 58888999999999 5787665
Q ss_pred -hhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 247 -DATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 247 -~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
..+++.|++++ ++.|+|||+++|+...
T Consensus 156 ~~~~~~~L~~l~--~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 156 MAQVIGRMEAIA--ADTGCSIVFLHHASKG 183 (279)
T ss_dssp HHHHHHHHHHHH--HHHCCEEEEEEEC---
T ss_pred HHHHHHHHHHHH--HHcCCEEEEEecCCCc
Confidence 77778888773 4569999999997654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-17 Score=167.13 Aligned_cols=163 Identities=9% Similarity=-0.013 Sum_probs=94.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|.++|+++.|+... +++++||+| +|+||||||||||+++|+|+.. +.|. +|.++.....
T Consensus 9 ~~~l~~~~l~~~y~~~~------vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t-- 71 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKS------VKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKT-- 71 (418)
T ss_dssp ------CCCCCCTTTTT------CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----C--
T ss_pred cCcEEEEecceeECCEE------EecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccc--
Confidence 46899999999996543 699999997 9999999999999999999976 4441 2221110000
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.+...+++++|+..+++.+|+.+++.+.... ........ +.+.+. .+++.+++||+
T Consensus 72 ---------~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~-----~~~~~~~~------i~~~i~----~~~~~~l~qr~ 127 (418)
T 2qag_C 72 ---------VQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV-----DNSNCWQP------VIDYID----SKFEDYLNAES 127 (418)
T ss_dssp ---------CEEEEEECC------CEEEEEEECC----------------CHH------HHHHHH----HHHHHHTTTSC
T ss_pred ---------eeeeeEEEEEecCCcccceeeeechhhhhhc-----cchhhHHH------HHHHHH----HHHHHHHHHHH
Confidence 0113689999998888889999988543210 00000011 111222 24567889999
Q ss_pred ceeeeehhHHH---HHHHHh----cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 223 DFAMVVSNIAE---IYKALK----AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 223 aIAraL~~~P~---iLLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+|||+++.+|+ +|++|| +||+... +.++.+ . .+.++|+|.|-.+.
T Consensus 128 ~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L---~-~~v~iIlVinK~Dl 179 (418)
T 2qag_C 128 RVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRL---H-EKVNIIPLIAKADT 179 (418)
T ss_dssp C-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHH---T-TTSEEEEEEESTTS
T ss_pred HHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHH---h-ccCcEEEEEEcccC
Confidence 99999999999 899999 4776542 444555 2 36788888885555
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-17 Score=173.73 Aligned_cols=142 Identities=10% Similarity=-0.041 Sum_probs=95.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+++|++|+ ++|++++|+||||||||||+|+|+|+.. ..|... . .. + ..+++++|
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v------p---a~-----------~-~~i~~~~~-- 652 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV------P---AQ-----------K-VEIGPIDR-- 652 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB------S---SS-----------E-EEECCCCE--
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc------c---hh-----------c-ccceeHHH--
Confidence 68999999 9999999999999999999999999864 334211 0 00 0 25666665
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+|+.+++.+++. ...+++|+|+++. +.+...+.+|+++|||| |+
T Consensus 653 -i~~~~~~~d~l~-------------------------------~~~stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gt 699 (800)
T 1wb9_A 653 -IFTRVGAADDLA-------------------------------SGRSTFMVEMTET-ANILHNATEYSLVLMDEIGRGT 699 (800)
T ss_dssp -EEEEEC------------------------------------------CHHHHHHH-HHHHHHCCTTEEEEEESCCCCS
T ss_pred -HHhhCCHHHHHH-------------------------------hhhhhhhHHHHHH-HHHHHhccCCCEEEEECCCCCC
Confidence 344444444432 1123456666543 33334588999999999 89
Q ss_pred CCCcchhh-hhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDAT-KRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i-~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.....+ ..+++.+. ++.|.++|++|||.++ +. +++++..+.+
T Consensus 700 d~~d~~~i~~~ll~~l~--~~~g~~vl~~TH~~el--~~-l~d~~~~v~n 744 (800)
T 1wb9_A 700 STYDGLSLAWACAENLA--NKIKALTLFATHYFEL--TQ-LPEKMEGVAN 744 (800)
T ss_dssp SSSHHHHHHHHHHHHHH--HTTCCEEEEECSCGGG--GG-HHHHSTTEEE
T ss_pred ChhHHHHHHHHHHHHHH--hccCCeEEEEeCCHHH--HH-HhhhhhceEE
Confidence 99988775 67777772 3258999999998765 43 7787766666
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-17 Score=165.58 Aligned_cols=75 Identities=7% Similarity=-0.025 Sum_probs=62.9
Q ss_pred ccCCCccceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
++..||||||||++||++|+. +|++||||| +||+..+..+.+.|+++ .+.+.++|+|||+.. ....|
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~---~~~~~~~ii~th~~~---~~~~~ 403 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH---RNPDLQFIVISLKNT---MFEKS 403 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH---CBTTBEEEEECSCHH---HHTTC
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHH---hcCCCEEEEEECCHH---HHHhC
Confidence 345699999999999999995 699999999 99999999999999987 334789999999643 34568
Q ss_pred hhhhhhhh
Q 016817 283 ARLKICEY 290 (382)
Q Consensus 283 d~v~ll~~ 290 (382)
|+++.+..
T Consensus 404 d~~~~~~~ 411 (430)
T 1w1w_A 404 DALVGVYR 411 (430)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEE
Confidence 88887754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-17 Score=163.26 Aligned_cols=177 Identities=15% Similarity=0.075 Sum_probs=111.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++++++.|+... +|+++||++++|++++|+||||||||||+++|+|++. ++|+|.+.|.++......
T Consensus 29 ~ie~~~~~~~~~~~~------~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~--- 99 (337)
T 2qm8_A 29 LAESRRADHRAAVRD------LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG--- 99 (337)
T ss_dssp HHTCSSHHHHHHHHH------HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC---
T ss_pred HHeeCCcccccChHH------HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccc---
Confidence 689999999996433 6999999999999999999999999999999999999 899999999875321110
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChh---------h---hhhhHHHHH-----------------------------hhh
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYN---------R---VHEGLEELS-----------------------------SWM 183 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~---------t---v~eni~~~~-----------------------------~~~ 183 (382)
......+ ..+++++|++.+|... + +.+.+.... ...
T Consensus 100 --~~~~~~~-~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~ 176 (337)
T 2qm8_A 100 --GSILGDK-TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM 176 (337)
T ss_dssp --CCSSCCG-GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE
T ss_pred --cchHHHh-hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEE
Confidence 0001123 3789999998777531 1 122111000 000
Q ss_pred hcCcccc-ccc----cccCccccccccccccccCCCccceeeecceeeeehh------HHHHHHHHhcCCCCcchhhhhh
Q 016817 184 SEGVHHN-QRC----LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN------IAEIYKALKAGDSKPLDATKRL 252 (382)
Q Consensus 184 ~~~~~~~-~~~----~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~------~P~iLLLDE~LD~~~~~~i~~~ 252 (382)
.....+. +.+ .+....+.+. ..+......+|+|++|++..|++++. .|+++. =-++|..+...+++.
T Consensus 177 d~~~~~~~~~i~~~i~~~~~ivvlN-K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~-~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 177 LPGAGDELQGIKKGIFELADMIAVN-KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT-ISGLHGKGLDSLWSR 254 (337)
T ss_dssp CSCC------CCTTHHHHCSEEEEE-CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE-EBTTTTBSHHHHHHH
T ss_pred cCCCcccHHHHHHHHhccccEEEEE-chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE-EeCCCCCCHHHHHHH
Confidence 0000000 001 1112223332 22101234578999999988887776 455442 118899888888888
Q ss_pred ccCc
Q 016817 253 FSAP 256 (382)
Q Consensus 253 l~~l 256 (382)
|.++
T Consensus 255 I~~~ 258 (337)
T 2qm8_A 255 IEDH 258 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-16 Score=152.90 Aligned_cols=164 Identities=14% Similarity=0.022 Sum_probs=98.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE--
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY-- 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q-- 162 (382)
+|++++ +++|++++|+||||||||||+++|+|+++ + +|+|.+.|.++. .. ++ ..+++++|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~~------------~~-~~~~~v~Q~~ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-YV------------FK-HKKSIVNQRE 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-SC------------CC-CSSSEEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-hh------------hc-cCceEEEeee
Confidence 466655 78999999999999999999999999998 6 899988876442 10 22 27889998
Q ss_pred ---eCCCCChhhhhhhHHHHHhhhhcCcc-ccccccccCcccc-----------------------c-------------
Q 016817 163 ---DSRGFNYNRVHEGLEELSSWMSEGVH-HNQRCLRSDDCAL-----------------------M------------- 202 (382)
Q Consensus 163 ---~~~l~~~~tv~eni~~~~~~~~~~~~-~~~~~~~~l~~~~-----------------------L------------- 202 (382)
++..|. .++..++..-.....-+.. +.+.+..+++.++ +
T Consensus 191 ~g~~~~~~~-~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l 269 (372)
T 2ewv_A 191 VGEDTKSFA-DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVL 269 (372)
T ss_dssp BTTTBSCSH-HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHH
Confidence 444442 3444443210000000000 0111111111100 0
Q ss_pred ccccc---ccccCCCccceeeecceeeeehhHHHH--HHHHh---cCCCC----c-----chhhhhhccCccccccCCCC
Q 016817 203 KNDAE---IDDLKSSPKYVLRRVDFAMVVSNIAEI--YKALK---AGDSK----P-----LDATKRLFSAPGLRKCNENP 265 (382)
Q Consensus 203 ~~~~~---~~~~~~LSGGqkQRvaIAraL~~~P~i--LLLDE---~LD~~----~-----~~~i~~~l~~l~~~~~~g~t 265 (382)
...+. .+..-.+|+| ||++||++|..+|++ +|+|| +||.. . +....+.+..+ ..|.|
T Consensus 270 ~~~l~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~----~~g~t 343 (372)
T 2ewv_A 270 SFILQGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY----KQGLI 343 (372)
T ss_dssp HHSCCEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT----TTSSS
T ss_pred HHhhhEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH----HCCCC
Confidence 00000 0111235888 899999999999999 99999 66632 2 34455555554 26889
Q ss_pred eEEEecCCCC
Q 016817 266 ILILTHGDML 275 (382)
Q Consensus 266 iIiiTHd~~l 275 (382)
.+.+.| ++
T Consensus 344 ~~~~a~--r~ 351 (372)
T 2ewv_A 344 TLEDAM--EA 351 (372)
T ss_dssp CTTTTT--SS
T ss_pred CHHHHH--HH
Confidence 888888 55
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-16 Score=158.30 Aligned_cols=181 Identities=11% Similarity=-0.037 Sum_probs=107.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc--eeehhhh-h----hhHhhhccc
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT--ITMYMEE-H----NVMRSLQSG 158 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~--~~~~~~~-~----~~~r~~~ig 158 (382)
+++++++.+++|+.++|+||||||||||+++|+|+++ ++|.|+++|.+-...... .....+. . ..++...-+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~ 328 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRA 328 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHH
Confidence 5788999999999999999999999999999999999 899999998742111100 0000000 0 000000011
Q ss_pred eeeEeC--CCCChhhhhhhHHHHHhhh-hcCc---cccccccccCcccc-----cccccc---c---cccCCCccceeee
Q 016817 159 FCVYDS--RGFNYNRVHEGLEELSSWM-SEGV---HHNQRCLRSDDCAL-----MKNDAE---I---DDLKSSPKYVLRR 221 (382)
Q Consensus 159 ~v~Q~~--~l~~~~tv~eni~~~~~~~-~~~~---~~~~~~~~~l~~~~-----L~~~~~---~---~~~~~LSGGqkQR 221 (382)
.+.|+| .+++..+..|+...+.... +... .+...+.++++++. +...+. + .....+||||+||
T Consensus 329 ~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R 408 (511)
T 2oap_1 329 ALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLR 408 (511)
T ss_dssp TGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEE
T ss_pred hhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceE
Confidence 233443 2334455566554332221 1100 01122223333322 211111 1 2344689999999
Q ss_pred cceeeeehhHHHHHHHHh--cCCCCcchhhhhhccCccccccCCCCeEE--EecCCCCChhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILI--LTHGDMLSTEERLDA 283 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIi--iTHd~~l~~~~~~~d 283 (382)
+++|.+ | +||+.....+++.+.++ ...+.|+++ +|| .++++...|.
T Consensus 409 ~~~ai~-----------E~~GlDp~~~~~~~~~l~~~---~~~~~tii~~~~sH--~l~ei~~~~g 458 (511)
T 2oap_1 409 RTKEVN-----------EILGIDPVDKNLLVNQFVKW---DPKEDKHIEVSMPK--KLEKMADFLG 458 (511)
T ss_dssp EEEEEE-----------EEEECCSSSSCCEEEEEEEE---ETTTTEEEECSCCT--HHHHHHHHHT
T ss_pred EEEEEE-----------EEcCcccCCCeEEEEEeEEE---cccCCEEEEcccHH--HHHHHHHHcC
Confidence 999854 8 99999999999999987 345888875 899 4444665553
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-16 Score=138.16 Aligned_cols=92 Identities=4% Similarity=-0.073 Sum_probs=73.6
Q ss_pred ccccCcccccccc--ccccccCCCccceeeeccee------eeehhHHHHHHHHh---cCCCCcchhhhhhccCcccccc
Q 016817 193 CLRSDDCALMKND--AEIDDLKSSPKYVLRRVDFA------MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKC 261 (382)
Q Consensus 193 ~~~~l~~~~L~~~--~~~~~~~~LSGGqkQRvaIA------raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~ 261 (382)
..+.++.+++... ..++++.+||||||||++|| |||+.+|++||||| +||+.++..+.+.|.++ .+
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~ 111 (148)
T 1f2t_B 35 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY---LK 111 (148)
T ss_dssp EEETTSSEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHT---GG
T ss_pred hhhhcCceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHH---Hc
Confidence 3444444554421 12488999999999999876 89999999999999 99999999999999997 33
Q ss_pred CCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 262 NENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 262 ~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.|.|||+||||++ +..+||++++++.
T Consensus 112 ~~~tiiivsH~~~---~~~~~d~ii~l~~ 137 (148)
T 1f2t_B 112 KIPQVILVSHDEE---LKDAADHVIRISL 137 (148)
T ss_dssp GSSEEEEEESCGG---GGGGCSEEEEEEE
T ss_pred cCCEEEEEEChHH---HHHhCCEEEEEEc
Confidence 5899999999763 5568899888853
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-16 Score=149.61 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=82.1
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee---EeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC--
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-- 167 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~-- 167 (382)
++.+|++++|+||||||||||+|+|+ +.+ .+|+|.+ +|+++...... .+...+||++|+|.+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~----------~~~~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL----------IPFGKGSFVGDTPGFSKV 229 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE----------EEETTTEEEESSCCCSSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE----------EEcCCCcEEEECcCcCcC
Confidence 45679999999999999999999999 888 8999999 88866432211 1112689999998543
Q ss_pred ---ChhhhhhhHHH-HHh------hhhc---CccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 168 ---NYNRVHEGLEE-LSS------WMSE---GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 168 ---~~~tv~eni~~-~~~------~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
+.+|+ +|+.. +.. .+.. .......+.++++.++|.+...++++..|||.+++++.|||
T Consensus 230 ~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 230 EATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred cccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788 77621 110 0111 11223567889999999863345999999999999999987
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-17 Score=158.62 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=97.1
Q ss_pred CcccC-CCCCCceeeeeeecccCCCchhHHHHHHHhh--c-cc----ce-eeeEeecCCCcccceeehhhhhhhHhhhcc
Q 016817 87 GIQKG-GMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RS----GL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157 (382)
Q Consensus 87 vL~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~----G~-I~i~G~~i~~~~~~~~~~~~~~~~~r~~~i 157 (382)
.|+.+ ++.|++|++++|+||||||||||++.+++.. + ++ |+ |++++.+.. .+ .++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---------------~~-~~i 182 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---------------RP-ERI 182 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---------------CH-HHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---------------CH-HHH
Confidence 36666 7899999999999999999999999999998 4 34 68 889887431 01 367
Q ss_pred ceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHH
Q 016817 158 GFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 158 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
++++|.+.+++. ++.+|+.+. ..... ....+.+ +.+. ..+.+||||| .+|++||+
T Consensus 183 ~~i~q~~~~~~~-~v~~ni~~~-----~~~~~-~~~~~~l------~~~~-~~~~~lS~G~-----------~~~~llIl 237 (349)
T 1pzn_A 183 REIAQNRGLDPD-EVLKHIYVA-----RAFNS-NHQMLLV------QQAE-DKIKELLNTD-----------RPVKLLIV 237 (349)
T ss_dssp HHHHHTTTCCHH-HHGGGEEEE-----ECCSH-HHHHHHH------HHHH-HHHHHSSSSS-----------SCEEEEEE
T ss_pred HHHHHHcCCCHH-HHhhCEEEE-----ecCCh-HHHHHHH------HHHH-HHHHHhcccc-----------CCCCEEEE
Confidence 888888777653 777776321 00000 0000111 1122 4556678877 67999999
Q ss_pred Hh---cCCCCc------------chhhhhhccCccccccCCCCeEEEecCCC
Q 016817 238 LK---AGDSKP------------LDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 238 DE---~LD~~~------------~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
|| .+|+.. ...++..|++++ ++.|+|||+++|...
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la--~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA--NLYDIAVFVTNQVQA 287 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH--HHTTCEEEEEEECC-
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH--HHcCcEEEEEccccc
Confidence 99 677642 245555666653 456899999999543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-15 Score=150.13 Aligned_cols=126 Identities=14% Similarity=0.010 Sum_probs=87.0
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeE-eecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFA-QTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~-G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
++++++.+ +|++++|+||||||||||+|+|+|+.. .+|+|.++ |++.. . -+...+++++|+.
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-----t---------t~~~~i~~v~q~~ 270 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-----T---------TTAARLYHFPHGG 270 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------------------CCCEEEECTTSC
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-----c---------eEEEEEEEECCCC
Confidence 56666654 699999999999999999999999986 58999987 65321 0 0113789999988
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHH
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEI 234 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~i 234 (382)
.+++..++.++.. +........+.+.++++.+++.++.+ ..+.+|| ||+||++||++++...++
T Consensus 271 ~l~dtpgv~e~~l----~~l~~~e~~~~~~e~l~~~gl~~f~~-~~~~~lS-G~~~r~ala~gli~~~R~ 334 (358)
T 2rcn_A 271 DVIDSPGVREFGL----WHLEPEQITQGFVEFHDYLGHCKYRD-CKHDADP-GCAIREAVENGAIAETRF 334 (358)
T ss_dssp EEEECHHHHTCCC----CCCCHHHHHHTSGGGGGGTTCSSSTT-CCSSSCT-TCHHHHHHHHTSSCHHHH
T ss_pred EecCcccHHHhhh----cCCCHHHHHHHHHHHHHHcCCchhcC-CCcccCC-HHHHHHHHHhcCCCHHHH
Confidence 8888788877421 10001111245677888999987654 9999999 999999999999887664
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-16 Score=156.33 Aligned_cols=153 Identities=10% Similarity=-0.015 Sum_probs=94.5
Q ss_pred HHHHHhhh---cccCCeee-----ecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc
Q 016817 68 ELRHKFLS---YRSGDFWI-----PIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 68 ~i~nvs~~---y~~~~~~v-----~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~ 138 (382)
++++++|+ |+.....+ ...+++++||.|++|++++|+||||||||||+++|+|+++ ++|.|+++|.. +.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 78888888 75321111 0002399999999999999999999999999999999999 89999999752 11
Q ss_pred ccceeehhhhhhhHhhhccceee-EeCCC--CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCc
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCV-YDSRG--FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~-Q~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
.. . ..+ ..++|++ |++.+ ++..|+++|+
T Consensus 215 ~~------~---~~~-~~v~~v~~q~~~~~~~~~~t~~~~i--------------------------------------- 245 (361)
T 2gza_A 215 FL------P---DHP-NHVHLFYPSEAKEEENAPVTAATLL--------------------------------------- 245 (361)
T ss_dssp CC------T---TCS-SEEEEECC----------CCHHHHH---------------------------------------
T ss_pred Cc------c---ccC-CEEEEeecCccccccccccCHHHHH---------------------------------------
Confidence 10 0 022 2688888 76532 2334444444
Q ss_pred cceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.++..+|+.+++||.-+ ..+.+.++.+. ....|++.++|+ .+ +..+++|+..+..
T Consensus 246 ---------~~~l~~~pd~~l~~e~r~----~~~~~~l~~l~---~g~~~~l~t~H~--~~-~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 246 ---------RSCLRMKPTRILLAELRG----GEAYDFINVAA---SGHGGSITSCHA--GS-CELTFERLALMVL 301 (361)
T ss_dssp ---------HHHTTSCCSEEEESCCCS----THHHHHHHHHH---TTCCSCEEEEEC--SS-HHHHHHHHHHHHT
T ss_pred ---------HHHHhcCCCEEEEcCchH----HHHHHHHHHHh---cCCCeEEEEECC--CC-HHHHHHHHHHHHh
Confidence 333333444444455111 23445555552 123478999995 32 6778888888765
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.4e-16 Score=147.09 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=88.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC-C
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS-R 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~-~ 165 (382)
+++++++++++| ++|+||||||||||+++|+|.... |.|.++|.++.... ... .+ +.++++||.. .
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~------~~~---~~-~~i~~vf~~a~~ 101 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMY------VGE---SE-RAVRQVFQRAKN 101 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSST------THH---HH-HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhh------hhH---HH-HHHHHHHHHHHh
Confidence 599999999999 999999999999999999998764 68999998654221 111 12 3678888875 4
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE 239 (382)
.++..++.+++..+... .. .... . ..... .++.+.+|||||+||+.|++|+.++|++| |+
T Consensus 102 ~~p~i~~~Deid~~~~~--r~---~~~~-~-----~~~~~-~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~ 161 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPR--RS---DRET-G-----ASVRV-VNQLLTEMDGLEARQQVFIMAATNRPDII--DP 161 (274)
T ss_dssp TCSEEEEEETCTTTCC--------------------CTTH-HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CH
T ss_pred cCCCeEeeehhhhhhcc--cC---CCcc-h-----HHHHH-HHHHHHhhhcccccCCEEEEeecCChhhC--CH
Confidence 56667777777532110 00 0000 0 01222 24778899999999999999999999875 77
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-16 Score=143.49 Aligned_cols=138 Identities=11% Similarity=0.027 Sum_probs=96.3
Q ss_pred ceeeeeeecccCCCchhHHHHHH---Hhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMY---SVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRV 172 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~---Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv 172 (382)
++++++|+||||||||||+++|+ |+.. ++|+|.++|.+.. .. .. ..+++++|+..+++..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----------~~---~~-~~i~~~~~~~~~~~~~~v 91 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----------TE---VG-EMAKQYIEKSLLVPDHVI 91 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----------CH---HH-HHHHHHHHTTCCCCHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----------Ch---HH-HHHHHHHHcCCCCCHHHH
Confidence 47899999999999999999999 9888 8999998876321 00 11 245667788778888899
Q ss_pred hhhHHHHHhh------hhcCccc-ccccccc--Ccccc------------ccccccccccCCCccceeeecceeeee-hh
Q 016817 173 HEGLEELSSW------MSEGVHH-NQRCLRS--DDCAL------------MKNDAEIDDLKSSPKYVLRRVDFAMVV-SN 230 (382)
Q Consensus 173 ~eni~~~~~~------~~~~~~~-~~~~~~~--l~~~~------------L~~~~~~~~~~~LSGGqkQRvaIAraL-~~ 230 (382)
.+++...... ...+... ..++..+ +..++ +.. +.++++.+||| || +|+ +.
T Consensus 92 ~~~l~~~l~~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r-~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 92 TRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDR-LSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp HHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHH-HHTEEEETTTT----EE---EETTTS
T ss_pred HHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHH-HHcCCCcCCCC----Cc---cccccC
Confidence 8888653210 0011111 1111111 12233 222 23478899999 66 788 99
Q ss_pred HHHHHHHH----h---cCCCCcchhhhhhccCc
Q 016817 231 IAEIYKAL----K---AGDSKPLDATKRLFSAP 256 (382)
Q Consensus 231 ~P~iLLLD----E---~LD~~~~~~i~~~l~~l 256 (382)
+|++++|| | ++|+.++..+.+.++++
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 99999999 9 89999999999998876
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.9e-17 Score=161.32 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=101.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceee--eeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~--~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++ ++.|++. + |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++......
T Consensus 16 ~l~~~~-~~~y~~~------~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-------l~g~~~~~~~~~-- 78 (427)
T 2qag_B 16 TVPLAG-HVGFDSL------P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-------FEGEPATHTQPG-- 78 (427)
T ss_dssp -CCCCC-CC-CC--------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-------C-------CCSS--
T ss_pred eEEEee-EEEECCe------e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-------ccCCcCCCCCcc--
Confidence 566667 7888532 2 9999999999999 9999999999999999999973 344433211110
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--Ccc----ccccccccCccc-cccc---cccccc---
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVH----HNQRCLRSDDCA-LMKN---DAEIDD--- 210 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~----~~~~~~~~l~~~-~L~~---~~~~~~--- 210 (382)
..+ +.++|++|++.+++.+|+.+|+.+....... ... ......++++.. ++.. ...+..
T Consensus 79 -------~~~-~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~ 150 (427)
T 2qag_B 79 -------VQL-QSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHV 150 (427)
T ss_dssp -------CEE-EEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCE
T ss_pred -------ceE-eeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccE
Confidence 012 3799999998888888998887432100000 000 001111111111 1110 000011
Q ss_pred --------cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccC-ccccccCCCCeEEEecCC
Q 016817 211 --------LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSA-PGLRKCNENPILILTHGD 273 (382)
Q Consensus 211 --------~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~-l~~~~~~g~tiIiiTHd~ 273 (382)
-+.|+-.+ +.|+++|..+++++++|+ .|.+.....+.+.+++ + ...|.+|+.++.|.
T Consensus 151 ~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L---~~~gi~I~~is~~d 219 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSEL---VSNGVQIYQFPTDD 219 (427)
T ss_dssp EEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHH---BTTBCCCCCCC---
T ss_pred EEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHH---HHcCCcEEecCCCc
Confidence 12344444 678888888889999999 6777777777777776 5 45799999999753
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-15 Score=148.00 Aligned_cols=160 Identities=15% Similarity=0.001 Sum_probs=106.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCce-------eeeeeecccCCCchhHHHHHHHhh----c-ccceeeeEe
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV-------ITILLMGFSGSGKSSLVNLMYSVL----S-RSGLVLFAQ 132 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G-------e~~alvGpnGsGKSTLl~~i~Gl~----~-~~G~I~i~G 132 (382)
.+++.++++..|+... +++++++.+.+| +.++|+||||+|||||+++|+|.+ . .+|.+..++
T Consensus 17 ~~lr~~~l~~~~g~~~------~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 17 QFLRPKSLDEFIGQEN------VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp CTTSCSSGGGCCSCHH------HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred HHcCCccHHHccCcHH------HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 3567778888885433 588999998877 899999999999999999999998 5 578877665
Q ss_pred ecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-----CccccccccccCcccccccccc
Q 016817 133 TSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-----GVHHNQRCLRSDDCALMKNDAE 207 (382)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-----~~~~~~~~~~~l~~~~L~~~~~ 207 (382)
.++.. ....++...+.|+.|...+++ ++.+++......... .....+.+...+..+++.. ..
T Consensus 91 ~~l~~----------~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 91 GDMAA----------ILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp HHHHH----------HHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EE
T ss_pred HHHHH----------HHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ec
Confidence 53210 001122236888888766654 667766332111100 0111233445566777764 44
Q ss_pred ccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCcc
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPG 257 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~ 257 (382)
..+..||+|++||++++ -+||+.+...+.++|++.+
T Consensus 158 -~~~~~Ls~~l~sR~~l~-------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 158 -TRSGLLSSPLRSRFGII-------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp -SCGGGSCHHHHTTCSEE-------------EECCCCCHHHHHHHHHHHH
T ss_pred -CCcccCCHHHHHhcCce-------------eeCCCCCHHHHHHHHHHHH
Confidence 78899999999999877 3899999999999998873
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-15 Score=144.31 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=75.7
Q ss_pred CCcccCC----CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee---EeecCCCcccceeehhhhhhhHhhhcc
Q 016817 86 GGIQKGG----MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNSSHTITMYMEEHNVMRSLQS 157 (382)
Q Consensus 86 ~vL~~is----l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~r~~~i 157 (382)
.+.++.+ |++.+|++++|+||||||||||+|+|+|+.+ ++|+|.+ +|+++...... .+.+.+
T Consensus 153 SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~----------~~~~~~ 222 (301)
T 1u0l_A 153 SAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL----------LKFDFG 222 (301)
T ss_dssp CTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE----------EECTTS
T ss_pred ECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE----------EEcCCC
Confidence 3555554 4466899999999999999999999999999 8999999 89876532211 111258
Q ss_pred ceeeEeCC----------------CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 158 GFCVYDSR----------------GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 158 g~v~Q~~~----------------l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
||++|+|. +|+.+++ +|+.+.. .........++.++++.++|.....+++|.+||+
T Consensus 223 g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~--~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 223 GYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSD--CNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp CEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTT--CCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCC--CcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 89999864 5788888 8875421 1112233456788999999953334599999996
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-15 Score=166.20 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=76.4
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEe
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILT 270 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT 270 (382)
.++.+||.....++.+.+|||||+|||+||++|+.+| ++||||| +||+.....++++|+++ ++.|.|||+|+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L---r~~G~TVIvVe 563 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM---RDLGNTLIVVE 563 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH---HTTTCEEEEEC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH---HhCCCEEEEEe
Confidence 4788899754335999999999999999999999984 9999999 99999999999999999 56799999999
Q ss_pred cCCCCChhhhhhhhhhhh
Q 016817 271 HGDMLSTEERLDARLKIC 288 (382)
Q Consensus 271 Hd~~l~~~~~~~d~v~ll 288 (382)
||++. +. .||+|++|
T Consensus 564 Hdl~~--i~-~ADrIi~L 578 (972)
T 2r6f_A 564 HDEDT--ML-AADYLIDI 578 (972)
T ss_dssp CCHHH--HH-SCSEEEEE
T ss_pred cCHHH--HH-hCCEEEEe
Confidence 96654 65 68999988
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-14 Score=136.01 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=97.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
..+++++.+.|.... +++++++++++| ++|+||||||||||+++|++... .|.|.++|.++....
T Consensus 25 ~~~l~~l~~~~~~~~------~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~------ 89 (254)
T 1ixz_A 25 KEELKEIVEFLKNPS------RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMF------ 89 (254)
T ss_dssp HHHHHHHHHHHHCHH------HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSC------
T ss_pred HHHHHHHHHHHHCHH------HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHH------
Confidence 567889988885433 599999999999 88999999999999999999875 788888886532110
Q ss_pred hhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.. ..+ +.++++||... .++..++.+++..+........ ...+.. ...+ ++...+|||||+||+.
T Consensus 90 ~~---~~~-~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~---------~~~~-~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 90 VG---VGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDER---------EQTL-NQLLVEMDGFEKDTAI 155 (254)
T ss_dssp TT---HHH-HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHH---------HHHH-HHHHHHHHTCCTTCCE
T ss_pred hh---HHH-HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHH---------HHHH-HHHHHHHhCCCCCCCE
Confidence 00 112 25778888753 4566778888865431110000 000000 0112 2556789999999999
Q ss_pred eeeeehhHHHHHHHHh
Q 016817 224 FAMVVSNIAEIYKALK 239 (382)
Q Consensus 224 IAraL~~~P~iLLLDE 239 (382)
||+|+.++|++ +|+
T Consensus 156 i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 156 VVMAATNRPDI--LDP 169 (254)
T ss_dssp EEEEEESCGGG--SCG
T ss_pred EEEEccCCchh--CCH
Confidence 99999999976 455
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-15 Score=138.92 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=97.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
..+++++.+.|.... +++++++++++| ++|+||||||||||+++|++... .|.|.+++.++....
T Consensus 49 ~~~l~~l~~~~~~~~------~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~------ 113 (278)
T 1iy2_A 49 KEELKEIVEFLKNPS------RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMF------ 113 (278)
T ss_dssp HHHHHHHHHHHHCHH------HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHST------
T ss_pred HHHHHHHHHHHHCHH------HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHH------
Confidence 567888988885433 599999999999 88999999999999999999875 788999887532110
Q ss_pred hhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCcc-ccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGVH-HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~-~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
. ...+ ..++++||... .++..++.|++..+......... ..+. ....+. +.+.+|||||+||+.
T Consensus 114 ~---~~~~-~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~---------~~~~~~-~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 114 V---GVGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE---------REQTLN-QLLVEMDGFEKDTAI 179 (278)
T ss_dssp T---THHH-HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHH---------HHHHHH-HHHHHHTTCCTTCCE
T ss_pred h---hHHH-HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchH---------HHHHHH-HHHHHHhCCCCCCCE
Confidence 0 0112 25778888753 55667888888654311100000 0000 011122 556789999999999
Q ss_pred eeeeehhHHHHHHHHh
Q 016817 224 FAMVVSNIAEIYKALK 239 (382)
Q Consensus 224 IAraL~~~P~iLLLDE 239 (382)
||+|+.++|++ +|+
T Consensus 180 i~~a~t~~p~~--ld~ 193 (278)
T 1iy2_A 180 VVMAATNRPDI--LDP 193 (278)
T ss_dssp EEEEEESCTTS--SCH
T ss_pred EEEEecCCchh--CCH
Confidence 99999999976 455
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.7e-15 Score=132.88 Aligned_cols=150 Identities=9% Similarity=-0.028 Sum_probs=93.4
Q ss_pred CcccCCC-CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGM-DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl-~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
.|+.+.. .+++|++++|+||||||||||++.+++ . ..+.++++..+- ........... ..++.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~--------~~~~~~~~~~~-~~~~~~--- 73 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGG--------FSPERLVQMAE-TRGLNP--- 73 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCC--------CCHHHHHHHHH-TTTCCH---
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCC--------CCHHHHHHHHH-hcCCCh---
Confidence 4777765 799999999999999999999999999 5 445555554310 00011110000 111000
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce--eeecceeeeehhH-HHHHHHHh--
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV--LRRVDFAMVVSNI-AEIYKALK-- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq--kQRvaIAraL~~~-P~iLLLDE-- 239 (382)
.+++ .+-.+..+|+++ +|+++.+++++.+ |+++++||
T Consensus 74 -----------------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 74 -----------------------------EEAL---------SRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp -----------------------------HHHH---------HHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred -----------------------------HHHh---------hcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 0000 011233445665 4678888888876 99999999
Q ss_pred -cCCCCcc--------hhhhhhccCccccccCCCCeEEEecCCCCC-----------hhhhhhhhhhhhhh
Q 016817 240 -AGDSKPL--------DATKRLFSAPGLRKCNENPILILTHGDMLS-----------TEERLDARLKICEY 290 (382)
Q Consensus 240 -~LD~~~~--------~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~-----------~~~~~~d~v~ll~~ 290 (382)
.+|+... ..+.+.|++++ ++.|.|||+++|..... .+..+||.+++++.
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~--~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIA--RKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHH--HHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHH--HHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 6676432 23445567663 44589999999965421 35667888888876
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-14 Score=129.71 Aligned_cols=115 Identities=16% Similarity=0.051 Sum_probs=69.1
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYN 170 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~ 170 (382)
.++|++++|+||||||||||+++|+|+++ . .|.|.++|..+... .......+..+.+++++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~------ 86 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR------LLEPRGLLPRKGAPETFDFE------ 86 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH------HHGGGTCGGGTTSGGGBCHH------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH------HHHHhcccccCCCCchhhHH------
Confidence 57899999999999999999999999998 3 67888887643210 00000001111233333321
Q ss_pred hhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee-eeehhHHHHHHHHh
Q 016817 171 RVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA-MVVSNIAEIYKALK 239 (382)
Q Consensus 171 tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA-raL~~~P~iLLLDE 239 (382)
...+.+.. +..+ +.+... . . .....+|+||+||+++| ++++.++.++++||
T Consensus 87 ~~~~~l~~----l~~~-----------~~i~~p-~-~-d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de 138 (208)
T 3c8u_A 87 GFQRLCHA----LKHQ-----------ERVIYP-L-F-DRARDIAIAGAAEVGPECRVAIIEGNYLLFDA 138 (208)
T ss_dssp HHHHHHHH----HHHC-----------SCEEEE-E-E-ETTTTEEEEEEEEECTTCCEEEEEESSTTBCS
T ss_pred HHHHHHHH----HhcC-----------Cceecc-c-C-CccccCCCCCceEEcCCCcEEEECCceeccCC
Confidence 11111111 1011 111111 1 1 12234799999999998 99999999988988
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-14 Score=135.90 Aligned_cols=124 Identities=15% Similarity=0.032 Sum_probs=79.3
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
-+++.+++|+||||||||||++.|.+++...| .+ + +.+.+|+||..+++ .+..+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g------~~------------------~-~~~~iv~~D~f~~~-~~~~~ 81 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY------GG------------------E-KSIGYASIDDFYLT-HEDQL 81 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH------GG------------------G-SCEEEEEGGGGBCC-HHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcC------CC------------------C-ceEEEeccccccCC-hHHHH
Confidence 35688999999999999999999999987433 10 0 13455599988777 47777
Q ss_pred hHHHHHh---hhh-cCcc---ccccccccCcccccc------c--cccccccCCCccceeeecceeeeehhHHHHHHHHh
Q 016817 175 GLEELSS---WMS-EGVH---HNQRCLRSDDCALMK------N--DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239 (382)
Q Consensus 175 ni~~~~~---~~~-~~~~---~~~~~~~~l~~~~L~------~--~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE 239 (382)
|+.+... .+. .+.+ +.+...+.++.+.-. + .+. .+...+||||+||+++|++.+.+|+|||+||
T Consensus 82 ~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG 160 (290)
T 1odf_A 82 KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 160 (290)
T ss_dssp HHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEE
T ss_pred HHhccccccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeC
Confidence 7754210 010 0111 112222233322111 1 122 5667899999999999844333899999999
Q ss_pred ---cCCCCc
Q 016817 240 ---AGDSKP 245 (382)
Q Consensus 240 ---~LD~~~ 245 (382)
++|+..
T Consensus 161 ~~~~ld~~~ 169 (290)
T 1odf_A 161 WFLGFNPIL 169 (290)
T ss_dssp SSTTCCCCC
T ss_pred ccccCCccc
Confidence 799875
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-14 Score=135.33 Aligned_cols=140 Identities=15% Similarity=0.044 Sum_probs=76.9
Q ss_pred HHHHhhhccc-CCeeeecCCcccC--C--CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee---EeecCCCcc
Q 016817 69 LRHKFLSYRS-GDFWIPIGGIQKG--G--MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNSS 139 (382)
Q Consensus 69 i~nvs~~y~~-~~~~v~~~vL~~i--s--l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i---~G~~i~~~~ 139 (382)
++++...|.. +-..+...+.++. + +++.+|++++|+||||||||||+|+|+|+.+ .+|+|.+ +|+.+....
T Consensus 139 ~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~ 218 (307)
T 1t9h_A 139 IQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV 218 (307)
T ss_dssp HHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC
T ss_pred HHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH
Confidence 6778888743 2222211233433 3 6788999999999999999999999999998 8999998 887654221
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCC----hhhhhhhHHH-HH-hh-h------hc---CccccccccccCcccccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFN----YNRVHEGLEE-LS-SW-M------SE---GVHHNQRCLRSDDCALMK 203 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~----~~tv~eni~~-~~-~~-~------~~---~~~~~~~~~~~l~~~~L~ 203 (382)
.. ++ ..+||++|+|.+.. .+++ +++.. +. .. + .. .......+.++++.++|.
T Consensus 219 ~~----------~~-~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~ 286 (307)
T 1t9h_A 219 EL----------IH-TSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELK 286 (307)
T ss_dssp CE----------EE-ETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSC
T ss_pred HH----------hh-cCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCCh
Confidence 10 11 13799999987654 5677 77731 11 10 1 11 112234577888999997
Q ss_pred ccccccccCCCccceeee
Q 016817 204 NDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 204 ~~~~~~~~~~LSGGqkQR 221 (382)
+... +...+|+.|++||
T Consensus 287 ~~r~-~~y~~lls~~~~~ 303 (307)
T 1t9h_A 287 QYRY-DHYVEFMTEIKDR 303 (307)
T ss_dssp HHHH-HHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHhhc
Confidence 5444 3444566677663
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-13 Score=129.85 Aligned_cols=134 Identities=13% Similarity=-0.022 Sum_probs=93.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCC-------------------CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI-------------------PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i-------------------~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
...+|+++||++.|. . ++++++|.+ ++|+++||+||||||||||+++|+|++.
T Consensus 34 ~~~~i~~~~v~~~y~--~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL--P------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HCTTCCHHHHHHTHH--H------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CccccchHhHHHHHH--H------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999993 2 589999988 8999999999999999999999999875
Q ss_pred ---ccceeee---EeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccC
Q 016817 124 ---RSGLVLF---AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSD 197 (382)
Q Consensus 124 ---~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l 197 (382)
++|+|.+ ||.... . ..+. .+|++ |++.+++.+++.+++..+.... .+..
T Consensus 106 ~~~~~G~i~vi~~d~~~~~----------~---~~~~-~~~~v-q~~~~~~~~~~~~~~~~~~~l~-~~~~--------- 160 (308)
T 1sq5_A 106 RWPEHRRVELITTDGFLHP----------N---QVLK-ERGLM-KKKGFPESYDMHRLVKFVSDLK-SGVP--------- 160 (308)
T ss_dssp TSTTCCCEEEEEGGGGBCC----------H---HHHH-HHTCT-TCTTSGGGBCHHHHHHHHHHHT-TTCS---------
T ss_pred hCCCCCeEEEEecCCccCc----------H---HHHH-hCCEe-ecCCCCCCccHHHHHHHHHHHh-CCCC---------
Confidence 5899999 765321 0 1232 68888 8777777889988887654221 1100
Q ss_pred ccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh
Q 016817 198 DCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239 (382)
Q Consensus 198 ~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE 239 (382)
. .. .+....+. .+|+..+.+.+.+|+++|+|.
T Consensus 161 -~------i~-~P~~~~~~--~~~~~~~~~~~~~~~ivIlEG 192 (308)
T 1sq5_A 161 -N------VT-APVYSHLI--YDVIPDGDKTVVQPDILILEG 192 (308)
T ss_dssp -C------EE-ECCEETTT--TEECTTCCEEEC-CCEEEEEC
T ss_pred -c------ee-cccccccc--cCcccccceecCCCCEEEECc
Confidence 0 01 11111222 356665556667788999988
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-14 Score=143.11 Aligned_cols=164 Identities=13% Similarity=0.028 Sum_probs=98.8
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE-----
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY----- 162 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q----- 162 (382)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+...... .+|++++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftTl~p---------------~~G~V~~~~~~~ 206 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTTLSP---------------NLGVVEVSEEER 206 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCSSCC---------------EEEEEECSSSCE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----cccCcccceecc---------------eeeEEEecCcce
Confidence 578999999999999999999999999999998743 122222111111 2222222
Q ss_pred -----eCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHH
Q 016817 163 -----DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 163 -----~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
.+.+.........+. ...+ ...+++..++..+++. +.++.+||+|++|++++|++|+..|.+|++
T Consensus 207 ~~l~DtpGli~~a~~~~~L~--~~fl----~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLG--LEFL----RHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSC--HHHH----HHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred EEEEeccccccchhhhhhhh--HHHH----HHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 222221111000000 0000 0112344455666664 367789999999999999999999999988
Q ss_pred HhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 238 LKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 238 DE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
-.+|+... ...+.+.+.. ++.+.++++||.- .-..+..+.+.+.
T Consensus 277 -NKlDl~~~-~~~~~l~~~l--~~~g~~vi~iSA~-~g~gi~eL~~~i~ 320 (416)
T 1udx_A 277 -NKVDLLEE-EAVKALADAL--AREGLAVLPVSAL-TGAGLPALKEALH 320 (416)
T ss_dssp -ECCTTSCH-HHHHHHHHHH--HTTTSCEEECCTT-TCTTHHHHHHHHH
T ss_pred -ECCChhhH-HHHHHHHHHH--HhcCCeEEEEECC-CccCHHHHHHHHH
Confidence 56888877 4444444432 3457788877742 2223555555443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-13 Score=117.02 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G 126 (382)
+|++++|+.++|+||||+|||||+++|++.+. .+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 56778899999999999999999999999987 665
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-12 Score=113.69 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=32.5
Q ss_pred hhHHHHHHHHh--cCCCCcchhhhhhccCccccccCCCC-eEEEec
Q 016817 229 SNIAEIYKALK--AGDSKPLDATKRLFSAPGLRKCNENP-ILILTH 271 (382)
Q Consensus 229 ~~~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~t-iIiiTH 271 (382)
+.+|++|++|| .+++..+..+++++.++ .+.|++ +|++||
T Consensus 81 ~~~~~lLilDE~~~~~~~~~~~l~~li~~~---~~~g~~~iiits~ 123 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEEQALLFSIFNRF---RNSGKGFLLLGSE 123 (149)
T ss_dssp GGGCSEEEEESTTCCCSHHHHHHHHHHHHH---HHHTCCEEEEEES
T ss_pred HhCCCEEEEeCccccChHHHHHHHHHHHHH---HHcCCcEEEEECC
Confidence 45789999999 88887788899999887 446788 777777
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-13 Score=123.74 Aligned_cols=33 Identities=3% Similarity=0.073 Sum_probs=29.1
Q ss_pred eee-eehhHHHHHHHHh---cCCCCcchhhhhhccCc
Q 016817 224 FAM-VVSNIAEIYKALK---AGDSKPLDATKRLFSAP 256 (382)
Q Consensus 224 IAr-aL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l 256 (382)
.|| +++.+|++++||| ++|..+...|.+.|.+.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~ 152 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAA 152 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 567 8999999999999 99999999998888765
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-13 Score=141.86 Aligned_cols=75 Identities=16% Similarity=-0.023 Sum_probs=66.7
Q ss_pred cccCCC-ccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 209 DDLKSS-PKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 209 ~~~~~L-SGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
+++.+| ||||+|||+|||||+.+| ++||||| +||+.++..+.+.|+++ .+ |.|||+||||+++ +. .|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~---~~-~~~vi~itH~~~~--~~-~~ 464 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL---AD-TRQVLVVTHLAQI--AA-RA 464 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH---HH-HSEEEEECCCHHH--HH-HS
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH---hC-CCEEEEEecCHHH--HH-hC
Confidence 456778 999999999999999999 9999999 99999999999999998 33 8999999997665 65 58
Q ss_pred hhhhhhhh
Q 016817 283 ARLKICEY 290 (382)
Q Consensus 283 d~v~ll~~ 290 (382)
|+++++++
T Consensus 465 d~~~~~~~ 472 (517)
T 4ad8_A 465 HHHYKVEK 472 (517)
T ss_dssp SEEEEEEC
T ss_pred CEEEEEec
Confidence 89888866
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-13 Score=124.40 Aligned_cols=181 Identities=10% Similarity=0.096 Sum_probs=71.3
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHH-HhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~-Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
..+++||++++|++++|+||||||||||+++|+ |+++. ..++.++...... . . .+ ..++|.|+++.
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~~~~~~~~~~~~~------~-g-~~-~g~~~~~~~~~ 82 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----IVKSVSVTTRAAR------K-G-EK-EGKDYYFVDRE 82 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----C----EEECCCEESSCCC------T-T-CC-BTTTBEECCHH
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----cccccccCCCCCC------c-c-cc-CCCeEEEecHH
Confidence 488999999999999999999999999999999 99852 1222211100000 0 0 00 14557777655
Q ss_pred CCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCCCccceeeec-c-eeeeehhHHHHHHHHh--
Q 016817 166 GFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV-D-FAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv-a-IAraL~~~P~iLLLDE-- 239 (382)
.|..++..+++........ .+. ..+.+.++++.-..- .+. -.+.. ...-++++ . ...+++..|+..+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v-ild-~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl 158 (231)
T 3lnc_A 83 EFLRLCSNGEIIEHAEVFGNFYGV-PRKNLEDNVDKGVST-LLV-IDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRL 158 (231)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEE-ECTTHHHHHHHTCEE-EEE-CCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC-
T ss_pred HhhhhhhcCceehhhhhccccCCC-CHHHHHHHHHcCCeE-EEE-cCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHH
Confidence 5544444433311000000 000 011111111110000 000 00000 11124555 2 3446677888889999
Q ss_pred -cCCCCcchhhhhhccCccc--cccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 240 -AGDSKPLDATKRLFSAPGL--RKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~--~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
+.|..+...+.+.|.+... .......+++++| +++++..-...++
T Consensus 159 ~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~--~~e~~~~~l~~~i 206 (231)
T 3lnc_A 159 CGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNE--DIEETADRISNIL 206 (231)
T ss_dssp -------------CHHHHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECc--CHHHHHHHHHHHH
Confidence 6666666555555543210 1123468889998 4544555444443
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-12 Score=114.22 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=49.7
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|+++++|++++|+||||||||||+++|+|+++ .+.+++..+...... ..+ ..++|+||++.+|+.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~ 67 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRP---------GDQ-EGVDYFFIDETRFQAMV 67 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCT---------TCC-BTTTBEECCHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCch---------hHh-cCceEEeccHHHHHHHH
Confidence 57788999999999999999999999999975 455655543221110 012 37899999987777777
Q ss_pred hhhhH
Q 016817 172 VHEGL 176 (382)
Q Consensus 172 v~eni 176 (382)
+.+++
T Consensus 68 ~~~~~ 72 (205)
T 3tr0_A 68 KEGAF 72 (205)
T ss_dssp HHTCE
T ss_pred hcCcE
Confidence 65554
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-12 Score=127.41 Aligned_cols=134 Identities=8% Similarity=-0.005 Sum_probs=70.9
Q ss_pred eeeeeecccCCCchhHHHHHHH-hhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS-VLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G-l~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
..+.|.||||+|||||+++|+| ++. ..|.+.++|.+...... .+ ..+++++|.+.+.-..+ + .
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~--~-~ 101 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-----------RK-LELNVVSSPYHLEITPS--D-M 101 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------------------CCEECSSEEEECCC-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-----------cc-ceeeeecccceEEecHh--h-c
Confidence 3489999999999999999999 667 79999999875431110 12 36888888653211000 0 0
Q ss_pred HHHHhhhhcCc--cccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh--cCCCCcchhhhhh
Q 016817 177 EELSSWMSEGV--HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPLDATKRL 252 (382)
Q Consensus 177 ~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~ 252 (382)
+... ..++.+.++.+..++.+. . +||| +..+|+++++|| .||+..+..+++.
T Consensus 102 -------~~~~~~~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 102 -------GNNDRIVIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp ---------CCHHHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred -------CCcchHHHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccccCHHHHHHHHHH
Confidence 0000 000111122222222211 1 5676 778899999999 9999999999999
Q ss_pred ccCccccccCCCCeEEEecCCCC
Q 016817 253 FSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 253 l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
|.+.. .+.++|++||++..
T Consensus 158 le~~~----~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 158 MEKYS----KNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHST----TTEEEEEEESCSCS
T ss_pred HHhhc----CCCEEEEEeCCHHH
Confidence 98862 46899999997643
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-13 Score=120.38 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=62.9
Q ss_pred cccCCCccceeeecceeeeehhHH----HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIA----EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL 281 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P----~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~ 281 (382)
+.+..||||||||++|||+|+.+| +++|||| +||+.++..+.+.|+++. .+.++|+|||+.. ....
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~----~~~~~ivith~~~---~~~~ 132 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS----KESQFIVITLRDV---MMAN 132 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHH---HHTT
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc----cCCEEEEEEecHH---HHHh
Confidence 678899999999999999999875 8999999 999999999999999873 3568999999543 3457
Q ss_pred hhhhhhhh
Q 016817 282 DARLKICE 289 (382)
Q Consensus 282 ~d~v~ll~ 289 (382)
||+++.+.
T Consensus 133 ad~i~~v~ 140 (173)
T 3kta_B 133 ADKIIGVS 140 (173)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 88877553
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-11 Score=126.22 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=48.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~ 138 (382)
+|+++||+|++ ++++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGS 70 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccC
Confidence 69999999999 9999999999999999999999999 899999999987643
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-12 Score=119.51 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh--hc------ccceeeeEeec
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV--LS------RSGLVLFAQTS 134 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl--~~------~~G~I~i~G~~ 134 (382)
-+++|++++|+||||||||||++.|++. .+ ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4789999999999999999999999994 43 25778888764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-11 Score=122.09 Aligned_cols=159 Identities=9% Similarity=-0.035 Sum_probs=98.4
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHH------------hhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccc--
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYS------------VLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG-- 158 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~G------------l~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig-- 158 (382)
++++|..++|+|+||||||||+|+|+| ... .+|.|.+.|..+... ......+ +.++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l--------~~~~~~~-~~v~~~ 86 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL--------CEAYKPK-SRVPAF 86 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH--------HHHHCCS-EEECEE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh--------hhhcccc-cccCcc
Confidence 677899999999999999999999999 334 578888876421100 0000001 1232
Q ss_pred -eeeEeCCCCChhhhhhhH--HHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHH--H
Q 016817 159 -FCVYDSRGFNYNRVHEGL--EELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--E 233 (382)
Q Consensus 159 -~v~Q~~~l~~~~tv~eni--~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~ 233 (382)
.+.+.+.++...+..+++ .+.. .+ . .+..++..+...+ +..+..+||+. +| +
T Consensus 87 i~lvD~pGl~~~~s~~e~L~~~fl~-~i-r------~~d~il~Vvd~~~---d~~i~~v~~~~------------dP~~d 143 (392)
T 1ni3_A 87 LTVFDIAGLTKGASTGVGLGNAFLS-HV-R------AVDAIYQVVRAFD---DAEIIHVEGDV------------DPIRD 143 (392)
T ss_dssp EEEECTGGGCCCCCSSSSSCHHHHH-HH-T------TCSEEEEEEECCC---TTCSSCCSSSS------------CHHHH
T ss_pred eEEEeccccccCCcHHHHHHHHHHH-HH-H------HHHHHHHHHhccc---cceeeeecccc------------Ccchh
Confidence 444545555555555544 1111 11 1 1122233333322 24455577763 89 9
Q ss_pred HHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh-hhhh
Q 016817 234 IYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK-ICEY 290 (382)
Q Consensus 234 iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~-ll~~ 290 (382)
++++|| .+|+......++.+..+. ...|.|++ +| ....+..+|+++. +|++
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~--~~~g~ti~--sh--~~~~~~~l~~~i~~~L~~ 198 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKIT--SRGANTLE--MK--AKKEEQAIIEKVYQYLTE 198 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSSCSSS--HH--HHHHHHHHHHHHHHHHHT
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHH--HhcCCccc--cc--cHHHHHHHHHHHHHHhcc
Confidence 999999 899999888888887761 23477764 99 5555888999988 6653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-12 Score=134.48 Aligned_cols=162 Identities=13% Similarity=0.018 Sum_probs=94.1
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHH--hhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYS--VLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~G--l~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~ 167 (382)
+++++.++..+.|.|++||||||++++|.. ++. +.|++.+.+.|.+... ++.+..+
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e---------------------l~~~~~l 218 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE---------------------LSVYEGI 218 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG---------------------GGGGTTC
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh---------------------hhhhccC
Confidence 567788899999999999999999999875 445 6789998887654210 0111111
Q ss_pred Chh--hhhhhHHHHHhhhhcCccccccccccCccccccccc--cccccCCCccceeeec----------ceeeeehhHHH
Q 016817 168 NYN--RVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA--EIDDLKSSPKYVLRRV----------DFAMVVSNIAE 233 (382)
Q Consensus 168 ~~~--tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~--~~~~~~~LSGGqkQRv----------aIAraL~~~P~ 233 (382)
|+. +|.++.......+.......++..+.+..+|+.+.. ..+....+||||+|+. ++|+++...|.
T Consensus 219 Phl~~~Vvtd~~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 219 PHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp TTBSSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred CcccceeecCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence 111 122222221111110001111223456666665321 1123457899999985 46888888898
Q ss_pred -HHHHHh---cCCCCcchhhhhhccCccc-cccCCCCeEEEecCCC
Q 016817 234 -IYKALK---AGDSKPLDATKRLFSAPGL-RKCNENPILILTHGDM 274 (382)
Q Consensus 234 -iLLLDE---~LD~~~~~~i~~~l~~l~~-~~~~g~tiIiiTHd~~ 274 (382)
++++|| .++ .....+.+.|.+++. .+..|.++|++||.+.
T Consensus 299 ivlvIDE~~~ll~-~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMM-TVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHH-HHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHh-hhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788999 344 222344444444321 1345899999999766
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-11 Score=118.66 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=79.3
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
.++++.++|++++|+|||||||||+++.|++++. ..|+|.+.+.|.. +.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~-------------------r~~a--------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF-------------------RAAA--------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT-------------------CHHH---------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc-------------------cHHH---------
Confidence 4567778999999999999999999999999998 7889999887532 1111
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec---ceeeeehhHHHHHHHHhcCCCCc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV---DFAMVVSNIAEIYKALKAGDSKP 245 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv---aIAraL~~~P~iLLLDE~LD~~~ 245 (382)
.+++... ++.+++. . ..++|||+.|++ +|++++..+|+++|+|++-+...
T Consensus 148 ----~eqL~~~-----------------~~~~gl~-~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~ 200 (306)
T 1vma_A 148 ----IEQLKIW-----------------GERVGAT-V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHT 200 (306)
T ss_dssp ----HHHHHHH-----------------HHHHTCE-E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred ----HHHHHHH-----------------HHHcCCc-E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhh
Confidence 1112111 1122332 1 235689999999 89999999999999999223566
Q ss_pred chhhhhhccCc
Q 016817 246 LDATKRLFSAP 256 (382)
Q Consensus 246 ~~~i~~~l~~l 256 (382)
...+++.++++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-12 Score=133.88 Aligned_cols=163 Identities=10% Similarity=-0.056 Sum_probs=97.0
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc-ceeeeEeecCCCcccceeehhh
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~-G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
++++.-|+... +++++++.+..|+.++|+||||+|||||+++|+++++ .. |.+.+++.+......
T Consensus 38 ~~l~~i~G~~~------~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p------- 104 (604)
T 3k1j_A 38 KLIDQVIGQEH------AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMP------- 104 (604)
T ss_dssp SHHHHCCSCHH------HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSC-------
T ss_pred cccceEECchh------hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCC-------
Confidence 34455564333 6899999999999999999999999999999999998 54 888888875543222
Q ss_pred hhhhHhhhccceeeEeC----------------------CCCChhhhhhhHHHHHhhhhcCccc-cccccccCccccccc
Q 016817 148 EHNVMRSLQSGFCVYDS----------------------RGFNYNRVHEGLEELSSWMSEGVHH-NQRCLRSDDCALMKN 204 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~----------------------~l~~~~tv~eni~~~~~~~~~~~~~-~~~~~~~l~~~~L~~ 204 (382)
.++++++.. ..+..+++.+|+....... .+.+. .+......+.+|..+
T Consensus 105 --------~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~-~~~~~v~~~~~~~~~L~G~~~ 175 (604)
T 3k1j_A 105 --------RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGR-TKAPFIDATGAHAGALLGDVR 175 (604)
T ss_dssp --------EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTC-SSCCEEECTTCCHHHHHCEEC
T ss_pred --------cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccC-CCCCEEEcCCCCHHhcCceEE
Confidence 223332211 1122233333331000000 00000 000001112223221
Q ss_pred cccccccCCCccceeeecceeeeehhHHHHHHHHh--cCCCCcchhhhhhccC
Q 016817 205 DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPLDATKRLFSA 255 (382)
Q Consensus 205 ~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~l~~ 255 (382)
... .....+|+|++|++..++....++.+|++|| .|++..+..+++.|.+
T Consensus 176 ~~~-~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 176 HDP-FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCC-C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred ech-hhcCCccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHc
Confidence 111 2336799999999999988888999999999 8998888888888863
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-10 Score=113.47 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=77.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|+++++.+++|++++|+||||||||||+++|+|.. +|.+.... .... . ++ ..+|++||.+.+
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~--~~~~---------~---~~-~~lg~~~q~~~~ 220 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNVN--LPLD---------R---LN-FELGVAIDQFLV 220 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECCS--SCTT---------T---HH-HHHGGGTTCSCE
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEEe--ccch---------h---HH-HHHHHhcchhHH
Confidence 599999999999999999999999999999999864 56665411 1100 0 11 135666665421
Q ss_pred -CChhhhhhh----------H---HHHHhhhhc------CccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 167 -FNYNRVHEG----------L---EELSSWMSE------GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 167 -~~~~tv~en----------i---~~~~~~~~~------~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
+...+.... + ..+...+.. .....+.+...+....+ +.....+++|++||++.+.
T Consensus 221 l~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~l-----d~~~~~l~~~~~~rl~~~~ 295 (377)
T 1svm_A 221 VFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV-----TMNEYSVPKTLQARFVKQI 295 (377)
T ss_dssp EETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEE-----EECSCCCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCccc-----ChhHHhhcHHHHHHHhhhh
Confidence 121111110 0 000101100 00011111111222222 2455678999999999999
Q ss_pred eehhHHHHHH-HHh
Q 016817 227 VVSNIAEIYK-ALK 239 (382)
Q Consensus 227 aL~~~P~iLL-LDE 239 (382)
+++..|++++ ||+
T Consensus 296 ~l~~~pDLliyLd~ 309 (377)
T 1svm_A 296 DFRPKDYLKHCLER 309 (377)
T ss_dssp ECCCCHHHHHHHHT
T ss_pred ccCCCCCeEEEEeC
Confidence 9999999988 887
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.89 E-value=6.5e-11 Score=109.62 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=40.4
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc-eeehhhhhhhHhhhccceeeEe
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT-ITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~-~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
+|++.+ ++++|+||||||||||+++|+|++. ++|+|.++|.++...... .... .....+ ..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~--~~~~~~-~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKG--LHGKLK-AGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------------------CGGGBC-SSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccc--hhhHhh-cCcEEEEEe
Confidence 345555 8999999999999999999999999 899999999876332211 0000 011123 378999984
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-10 Score=114.52 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=33.5
Q ss_pred CCCceeeeeeecccCCCchhHHHHH--HHhhc-ccc-----eeeeEeec
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLM--YSVLS-RSG-----LVLFAQTS 134 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i--~Gl~~-~~G-----~I~i~G~~ 134 (382)
-|++|++++|+||||||||||++.+ +++.+ +.| .++|++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5789999999999999999999954 56665 444 78888874
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-10 Score=116.51 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=92.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
..+++++...|.... +++++++++++| +.|+||||+|||||+++|++... .|.|.++|.++.+...
T Consensus 40 k~~l~~lv~~l~~~~------~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~----- 105 (499)
T 2dhr_A 40 KEELKEIVEFLKNPS------RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFV----- 105 (499)
T ss_dssp HHHHHHHHHHHHCGG------GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCT-----
T ss_pred HHHHHHHHHHhhchh------hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhh-----
Confidence 567778877775433 599999999999 88999999999999999999765 6788888876542110
Q ss_pred hhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCcc-ccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGVH-HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~-~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.. .. ..+..+||... ..+...+.+++..+......... ..+. ....+ ++...+||||++|+..
T Consensus 106 -g~---~~-~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e---------~~~~l-~~LL~~Ldg~~~~~~v 170 (499)
T 2dhr_A 106 -GV---GA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE---------REQTL-NQLLVEMDGFEKDTAI 170 (499)
T ss_dssp -TH---HH-HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHH---------HHHHH-HHHHHHGGGCCSSCCC
T ss_pred -hh---HH-HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHH---------HHHHH-HHHHHHhcccccCccE
Confidence 00 11 24566777643 34445555666432100000000 0000 00111 2445679999999999
Q ss_pred eeeeehhHHHHHHHHh
Q 016817 224 FAMVVSNIAEIYKALK 239 (382)
Q Consensus 224 IAraL~~~P~iLLLDE 239 (382)
|++|..++|++ ||+
T Consensus 171 iviAatn~p~~--LD~ 184 (499)
T 2dhr_A 171 VVMAATNRPDI--LDP 184 (499)
T ss_dssp EEEECCSCGGG--SCT
T ss_pred EEEEecCChhh--cCc
Confidence 99999999987 787
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-11 Score=111.32 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=33.7
Q ss_pred CcccC-CCCCCceeeeeeecccCCCchhHHHHH-HHhhccccee-eeEe
Q 016817 87 GIQKG-GMDIPPVITILLMGFSGSGKSSLVNLM-YSVLSRSGLV-LFAQ 132 (382)
Q Consensus 87 vL~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i-~Gl~~~~G~I-~i~G 132 (382)
.|+.+ .--+++|++++|+||||||||||+..+ .+..+..+.+ ++++
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46666 667899999999999999999996555 4554544444 4444
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.5e-10 Score=100.95 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=51.4
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCCh
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~ 169 (382)
+-.++.++|++++|+||||||||||+++|++.+ |.+.++|.++... .. .+...+|+++|+..+++.
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~--------~~---~~~~~~g~~~~~~~~~~~ 86 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSP--------EN---IATMQRGIPLTDEDRWPW 86 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCH--------HH---HHHHHTTCCCCHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccH--------HH---HHHHhcCCCCCCcccccH
Confidence 334667789999999999999999999999987 8999998754311 00 112357999998766666
Q ss_pred hhhhhhHH
Q 016817 170 NRVHEGLE 177 (382)
Q Consensus 170 ~tv~eni~ 177 (382)
+++.+++.
T Consensus 87 ~~~~~~~~ 94 (200)
T 4eun_A 87 LRSLAEWM 94 (200)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766664
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-10 Score=105.93 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=35.0
Q ss_pred CchhHHHHH-hhhcccCCeeeecCCcccCCCCCCc---eeeeeeecccCCCchhHHHHHHHhh
Q 016817 64 DGLNELRHK-FLSYRSGDFWIPIGGIQKGGMDIPP---VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 64 ~~~i~i~nv-s~~y~~~~~~v~~~vL~~isl~i~~---Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++++++|+ +++|.++. . +|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~~~-~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQ-Q----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------C-H----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecCcc-h----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 99993222 2 69999999999 9999999999999999999999865
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-09 Score=108.06 Aligned_cols=135 Identities=12% Similarity=0.061 Sum_probs=81.0
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-cccee-eeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I-~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
-+++|+++.|.||+|||||||+..+++... ..|.+ ++++....+ + .|.+++|+.+|+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---------~----~ra~rlgv~~~~l~i~~~~~ 123 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---------P----VYAKNLGVDLKSLLISQPDH 123 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---------H----HHHHHHTCCGGGCEEECCSS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---------h----HHHHHcCCchhhhhhhhccC
Confidence 367899999999999999999999999988 67776 555542211 1 12236788777654444455
Q ss_pred hhhhHHHHHhhhhcCccccccccccCcccccccccccccc-CCCcc--ceeeecceeeeehhHHHHHHHHhcCCCCcchh
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-KSSPK--YVLRRVDFAMVVSNIAEIYKALKAGDSKPLDA 248 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-~~LSG--GqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~ 248 (382)
+.+.+........... .+.+-++. +...++ .+++| |++|++..||++. .
T Consensus 124 ~e~~l~~~~~l~~~~~---------~dlvVIDS-i~~l~~~~el~g~~G~~q~~~qar~la------------------~ 175 (356)
T 3hr8_A 124 GEQALEIVDELVRSGV---------VDLIVVDS-VAALVPRAEIEGAMGDMQVGLQARLMS------------------Q 175 (356)
T ss_dssp HHHHHHHHHHHHHTSC---------CSEEEEEC-TTTCCCHHHHTTCCCSSCSSHHHHHHH------------------H
T ss_pred HHHHHHHHHHHhhhcC---------CCeEEehH-hhhhcChhhhcccchhhHHHHHHHHHH------------------H
Confidence 5555543321111111 11112221 111222 33444 8899998888765 3
Q ss_pred hhhhccCccccccCCCCeEEEec
Q 016817 249 TKRLFSAPGLRKCNENPILILTH 271 (382)
Q Consensus 249 i~~~l~~l~~~~~~g~tiIiiTH 271 (382)
++..|..++ ++.+.|||+|.|
T Consensus 176 ~L~~L~~la--k~~~~tVI~inq 196 (356)
T 3hr8_A 176 ALRKIAGSV--NKSKAVVIFTNQ 196 (356)
T ss_dssp HHHHHHHHH--HTSSCEEEEEEE
T ss_pred HHHHHHHHH--HhcCCEEEEEee
Confidence 344455553 456899999988
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.2e-10 Score=100.10 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=76.1
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc------------ccceeeeEeecCC----CcccceeehhhhhhhHhhhccceeeE
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS------------RSGLVLFAQTSSG----NSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~------------~~G~I~i~G~~i~----~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
-.++|+|+||||||||++.++|... .+|+|.++|+++. +..............++.....++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 109 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVY 109 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEE
Confidence 4689999999999999999999864 2678888876432 00000000000000011100111111
Q ss_pred eCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-cC
Q 016817 163 DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-AG 241 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-~L 241 (382)
|.. . ....+++................+..++.++++.+. ..+.+.+|++|+.+|+++++|= ++
T Consensus 110 d~~--~-~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~~~~ld~Sal 174 (191)
T 1oix_A 110 DIA--K-HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNGLSFIETSAL 174 (191)
T ss_dssp ETT--C-HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred ECc--C-HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcCCEEEEEeCC
Confidence 210 1 111233322111111101112234445555555422 1234678999999999998988 99
Q ss_pred CCCcchhhhhhccC
Q 016817 242 DSKPLDATKRLFSA 255 (382)
Q Consensus 242 D~~~~~~i~~~l~~ 255 (382)
|..+...+++.|.+
T Consensus 175 d~~~v~~l~~~l~~ 188 (191)
T 1oix_A 175 DSTNVEAAFQTILT 188 (191)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.5e-11 Score=117.52 Aligned_cols=75 Identities=13% Similarity=0.003 Sum_probs=63.4
Q ss_pred cccCCCccceeeec------ceeeeehhH-HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChh
Q 016817 209 DDLKSSPKYVLRRV------DFAMVVSNI-AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE 278 (382)
Q Consensus 209 ~~~~~LSGGqkQRv------aIAraL~~~-P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~ 278 (382)
+++..|||||+||+ ++|++|+.+ |++||||| +||+..+..+.+.|.++ . .+.+||+||||+. +
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~---~-~~~~vi~~th~~~---~ 348 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV---K-SIPQMIIITHHRE---L 348 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC---C-SCSEEEEEESCGG---G
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh---c-cCCeEEEEEChHH---H
Confidence 45678999999988 567899999 99999999 99999999999999987 2 3468999999764 3
Q ss_pred hhhhhhhhhhhh
Q 016817 279 ERLDARLKICEY 290 (382)
Q Consensus 279 ~~~~d~v~ll~~ 290 (382)
..+||+++++++
T Consensus 349 ~~~~d~~~~l~k 360 (371)
T 3auy_A 349 EDVADVIINVKK 360 (371)
T ss_dssp GGGCSEEEEEEE
T ss_pred HhhCCEEEEEEe
Confidence 467888888864
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-09 Score=96.64 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=44.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhccccee--eeEeecC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLV--LFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I--~i~G~~i 135 (382)
+.+..++..++|++++|+||||||||||+++|++.+...|.+ +++|.++
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 477888888999999999999999999999999998877888 8898754
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-08 Score=98.63 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=63.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHh----hhcccee-e
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMR----SLQSGFC-V 161 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r----~~~ig~v-~ 161 (382)
+++++|++++|++++|+||||+||||++..|++.+. ..|+|.+.+.|+..... ..+...+. +..++++ +
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a-----~~ql~~~~~~~~~~~l~vip~ 169 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA-----TQQLEEWIKTRLNNKVDLVKA 169 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHH-----HHHHHHHHTTTSCTTEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH-----HHHHHHHHhccccCCceEEeC
Confidence 378999999999999999999999999999999999 89999999987643211 11112221 1368888 7
Q ss_pred EeCCCCChhhhhhhHHH
Q 016817 162 YDSRGFNYNRVHEGLEE 178 (382)
Q Consensus 162 Q~~~l~~~~tv~eni~~ 178 (382)
|.....+..++.+++..
T Consensus 170 ~~~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 170 NKLNADPASVVFDAIKK 186 (320)
T ss_dssp SSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 77666666666676643
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.1e-09 Score=97.30 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=47.8
Q ss_pred CceeeeeeecccCCCchhHHHHHH---Hhhc-ccceee--------eEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMY---SVLS-RSGLVL--------FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~---Gl~~-~~G~I~--------i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
++|++++|+|||||||||++++|+ |+.. ++|.|+ .+|.++.+.. ....++. .++++||+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~--------~~~~~~~-~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEE--------ALVPLAA-HLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSST--------THHHHHH-TCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHH--------HHHHHHH-cCCEEEec
Confidence 789999999999999999999999 9888 899999 8887653211 1223454 89999986
Q ss_pred C
Q 016817 164 S 164 (382)
Q Consensus 164 ~ 164 (382)
.
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-09 Score=96.17 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=73.9
Q ss_pred eeeeecccCCCchhHHHHHHHhh-----------c-ccceeeeEeecCC----CcccceeehhhhhhhHhhhccceeeEe
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL-----------S-RSGLVLFAQTSSG----NSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~-----------~-~~G~I~i~G~~i~----~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
.++|+|+||||||||++.++|.. + .+|+|.++|+++. +.+............++.....++..+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 58999999999999999999974 1 2578888876431 110000000000000111011111112
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-cCC
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-AGD 242 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-~LD 242 (382)
. ....+ .+++................+..++.++++.+... .....|++|+.+|+++++|= ++|
T Consensus 87 ~--~~~~s-~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~------------~~~~~a~~l~~~~~~~~~d~Sal~ 151 (199)
T 2f9l_A 87 I--AKHLT-YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA------------VPTDEARAFAEKNNLSFIETSALD 151 (199)
T ss_dssp T--TCHHH-HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC------------SCHHHHHHHHHHTTCEEEECCTTT
T ss_pred C--cCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC------------cCHHHHHHHHHHcCCeEEEEeCCC
Confidence 1 12122 23332211111110111223444555555543211 12345889999999988888 999
Q ss_pred CCcchhhhhhccCc
Q 016817 243 SKPLDATKRLFSAP 256 (382)
Q Consensus 243 ~~~~~~i~~~l~~l 256 (382)
+.+...+++.|.+.
T Consensus 152 ~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 152 STNVEEAFKNILTE 165 (199)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998888664
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-09 Score=99.87 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=38.5
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i 135 (382)
+.+-+.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+.+.
T Consensus 10 ~~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~ 54 (230)
T 2vp4_A 10 KGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPV 54 (230)
T ss_dssp --CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTH
T ss_pred hCCccCCCCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCH
Confidence 3444678899999999999999999999999998 78999998754
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-10 Score=114.23 Aligned_cols=174 Identities=10% Similarity=-0.018 Sum_probs=101.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeEeecCCCcccceeehhhhhh-hHhhhccceeeEe
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGNSSHTITMYMEEHN-VMRSLQSGFCVYD 163 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~G~~i~~~~~~~~~~~~~~~-~~r~~~ig~v~Q~ 163 (382)
.|+++..-+++|+++.|.|++|+|||||+..+++... ..| .|.+.+.+.. ..+.. .+.....++-++.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s---------~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS---------AQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC---------HHHHHHHHHHHHHTCCHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC---------HHHHHHHHHHHHcCCCHHH
Confidence 4888888899999999999999999999999999877 556 6777665321 11111 0101122332221
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh--hHHHHHHHHh--
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS--NIAEIYKALK-- 239 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~--~~P~iLLLDE-- 239 (382)
.. ...++- ...+++.++++.++..+... ..+..+|.++.+ +.||.++ .+|+++++|+
T Consensus 263 l~-~g~l~~---------------~~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 263 LR-TGKLTP---------------EDWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp HH-TSCCCH---------------HHHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGG
T ss_pred Hh-cCCCCH---------------HHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHH
Confidence 10 000000 00011222222222222222 335678999876 5566665 5799999999
Q ss_pred cCCCC-----cc----hhhhhhccCccccccCCCCeEEEec---------C--CCCC------hhhhhhhhhhhhhh
Q 016817 240 AGDSK-----PL----DATKRLFSAPGLRKCNENPILILTH---------G--DMLS------TEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~-----~~----~~i~~~l~~l~~~~~~g~tiIiiTH---------d--~~l~------~~~~~~d~v~ll~~ 290 (382)
.+... ++ ..+.+.|+.++ ++.|++||+++| | +.++ .+...+|.|+++..
T Consensus 324 ~~~~~~~~~~~~~~~i~~i~~~Lk~lA--ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 324 LIQGSGRSKENRQQEVSEISRSLKALA--RELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp GSCCSCC----CHHHHHHHHHHHHHHH--HHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHH--HHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 33321 12 45666677774 567999999999 3 3221 35667888888765
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-09 Score=104.33 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=32.7
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeEee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQT 133 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~G~ 133 (382)
.+|++++|+|||||||||+++.|++.+. .+| +|.+-+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4799999999999999999999999998 688 5655544
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-09 Score=105.70 Aligned_cols=187 Identities=13% Similarity=-0.012 Sum_probs=92.8
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHH--hhc-ccceeeeEeecCCCcccceee
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS--VLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G--l~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++...|+..... .+|++++++++ .++|+|++|||||||++.|.| +++ .+|.++-....+.-.... .
T Consensus 10 ~l~~~~~~~~~~~~~---~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~--~ 81 (360)
T 3t34_A 10 KIQRACTALGDHGDS---SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID--D 81 (360)
T ss_dssp HTTTTTTSCSSCCSS---CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS--S
T ss_pred HHHHHHHhhCccccc---cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC--C
Confidence 567788888643211 16999999999 899999999999999999999 556 567665333211100000 0
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccc----------cccCccccccccccccccCCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRC----------LRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~----------~~~l~~~~L~~~~~~~~~~~L 214 (382)
.......+.. ..+..++++.........++..... ...+....... ..+.+.-|+... ....+.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~v~~~i~~~~~~~~g--~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~---~~~~q~ 155 (360)
T 3t34_A 82 GTREYAEFLH-LPRKKFTDFAAVRKEIQDETDRETG--RSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKV---AVDGQS 155 (360)
T ss_dssp CSCCEEEETT-STTCCBSCHHHHHHHHHHHHHHTSC--TTCCCCCSCEEEEEEETTSCSEEEEECCCBCSS---CCTTCC
T ss_pred cccceeeeec-CCCcccCCHHHHHHHHHHHHHHhcC--CCCCcccceEEEEEeCCCCCCeEEEECCCCCcC---CcCCCc
Confidence 0000000111 2344555432222111111111000 00111111000 112223333221 223456
Q ss_pred ccceeeecceeeeehhHHHHHHHHh--cCCCCcchhhhhhccCccccccCC-CCeEEEec
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPLDATKRLFSAPGLRKCNE-NPILILTH 271 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g-~tiIiiTH 271 (382)
++.++|+..+++..+.+|+++|+.- +-+.......+++++.+ ...| .+++++|.
T Consensus 156 ~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~---~~~~~~~i~V~nK 212 (360)
T 3t34_A 156 DSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV---DPSGDRTFGVLTK 212 (360)
T ss_dssp SSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS---CTTCTTEEEEEEC
T ss_pred hhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh---cccCCCEEEEEeC
Confidence 7888899999999999999777644 22222234445566665 2234 57777777
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-08 Score=88.93 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=28.5
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G 126 (382)
++|++|++++|+||||||||||+++|++++. +.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 4688999999999999999999999999985 445
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.5e-08 Score=88.41 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=25.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|+||++++|++++|+||+||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 699999999999999999999999999999999876
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=90.77 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=51.6
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+.++++++.|+.. -++++|+ +|++++++|+||+||||++..|++++. ..|+|.+.+.++
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 6788999999532 3678888 899999999999999999999999999 789999998865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-08 Score=86.63 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=45.0
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
.+|++++|+|||||||||++++|++.+ |.+.+++.++... . .++...+|+.+|+...++.++..++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~~--------~---~~~~~~~g~~~~~~~~~~~~~~~~~ 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPR--------R---NIEKMASGEPLNDDDRKPWLQALND 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCCH--------H---HHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccch--------H---HHHHhhcCcCCCccccccHHHHHHH
Confidence 569999999999999999999999975 8888888654210 0 1111246777776433344444443
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-08 Score=85.70 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=34.9
Q ss_pred ccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 89 ~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
+++++++.+| +++|+||||||||||+++|.+++. ..|...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~ 58 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAM 58 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 6778888899 999999999999999999999987 666543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-08 Score=89.40 Aligned_cols=71 Identities=14% Similarity=-0.007 Sum_probs=47.0
Q ss_pred ccceeeecceeeeehhHHHHHHHHh-cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK-AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE-~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.|+.+|..+++.+..+|+.+..++ .++|..+..+.+.+... .+.++|+.+|.+........++.+++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l~~~~~p~v~~~~~~~~~~~-----~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQ-----TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTC-----CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 6788999999999999998877777 77787777777777654 34578888895443222456677776653
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-07 Score=83.73 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=37.9
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
..++|++++|+||||||||||+++|+++++ ..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 467899999999999999999999999998 789998887754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-08 Score=95.64 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=45.3
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCcee------eeeeecccCCCchhHHHHHHHhhc---ccceeeeEeec
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI------TILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTS 134 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge------~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~ 134 (382)
.+.+++.|+... +|++++..+.+++ ++||+||||||||||+++|++++. ..|.+.+-+.|
T Consensus 63 ~rll~~~~~~~~------~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 63 SRLLSFYVTARQ------TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred HHHHHHhhcchH------HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 345566665443 5777777776665 999999999999999999999987 36776655553
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.8e-08 Score=93.83 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=56.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+++.+++.+.|.... +++++++.+.+|.+++|+|++|+|||||++.|++.+. ..|+|.+-+.+..
T Consensus 30 ~ie~~~~~~~~~~~~------~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 30 LVESRHPRHQALSTQ------LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHCCCHHHHHHHHH------HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HhhcCCchhhhHHHH------HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 677788888886443 5899999999999999999999999999999999998 7888888777653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-07 Score=82.93 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEe
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQ 132 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G 132 (382)
+|++++|+||||||||||+++|+++++ ..|.|....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt 41 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 41 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence 589999999999999999999999986 367776543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.3e-08 Score=101.78 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=37.1
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eee-eEeecC
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVL-FAQTSS 135 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~-i~G~~i 135 (382)
..+++|++++|+|+||||||||+++|+|++. .+| +|. ++|.++
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3678999999999999999999999999998 665 785 787643
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-08 Score=97.64 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
-+++|+++.|.||+|||||||+..++.... ..|.+.+-.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 467999999999999999999888887666 656655543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.5e-07 Score=82.86 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=42.6
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh---c-ccceeee--------EeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL---S-RSGLVLF--------AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~---~-~~G~I~i--------~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+.+++|+|||||||||+.++|++.+ . ++|.+.. +|.++.+ ......++. .+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~--------~~~~~~~~~-~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVAS--------EDALVPLAS-HLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTC--------HHHHHHHHH-TCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccC--------HHHHHHHHH-hCceeeecc
Confidence 4689999999999999999999987 4 6898887 4543321 112233454 799999875
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.11 E-value=9e-07 Score=79.87 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=26.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999886
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.05 E-value=5e-06 Score=79.63 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=51.4
Q ss_pred hHHHHHhhhcccCCeeeecCCccc-CCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQK-GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~-isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+-.+++.+.|+.. .++ ++|+.+ |++++++|+||+||||++..|++.+. ..|+|.+.+.+..
T Consensus 75 ~~~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 75 IVYDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4567888888543 346 888887 99999999999999999999999999 7889999888754
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8.1e-07 Score=87.97 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=49.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcc--------------cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQ--------------KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~--------------~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.+.|+|+++.|+.... .|+ |+++.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 131 ~~ri~Fe~ltp~yP~er~-----~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANSRL-----RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCSBC-----CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCcc-----ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 457899999999986542 488 8999999999999999999999999999999886
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-06 Score=77.85 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34556899999999999999999999999875
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1e-06 Score=91.33 Aligned_cols=60 Identities=18% Similarity=0.091 Sum_probs=49.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
+-++++.+.|.... ++.++++++ +|++++|+||||+|||||+++|++... +.|+|.+.|.
T Consensus 84 ~G~~~vk~~i~~~~------~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERILEYL------AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHHHHHH------HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred ccHHHHHHHHHHHH------HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34567777774322 588999999 799999999999999999999999998 8899988774
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.6e-06 Score=73.72 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEe
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G 132 (382)
.|++++|+||||||||||+++|++.+. -+.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEec
Confidence 367899999999999999999999864 345554
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.95 E-value=8.8e-06 Score=81.73 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=50.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+-.+++++.|+.. -++++|+ +|++++++|+|||||||++..|++.+. ..|+|.+.+.|+.
T Consensus 77 ~v~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 4466788888532 2577887 899999999999999999999999999 7899999888764
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.8e-06 Score=73.42 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=32.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc--eeeeEeec
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG--LVLFAQTS 134 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G--~I~i~G~~ 134 (382)
.+|++++|+|++||||||++++|++.++..| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4689999999999999999999999886556 66677653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.1e-06 Score=88.25 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+++++|++.+| +.+|+|+||||||||+.+|..+.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 478889999999 99999999999999999998873
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.5e-06 Score=80.04 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=36.3
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+++.+++|+|++|||||||+|.|.|.+. ..|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 4588999999999999999999999988 7899999887654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-07 Score=90.23 Aligned_cols=62 Identities=8% Similarity=-0.120 Sum_probs=42.6
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHH-h---cCCCCcchhhhhhccCccccccCCCCeEEEe--cCCCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKAL-K---AGDSKPLDATKRLFSAPGLRKCNENPILILT--HGDML 275 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLD-E---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT--Hd~~l 275 (382)
..+..+|+|++|++. +.+...++-++++| + ++|......+++.+.+.. .+.++|+|. ||+.-
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVAD 294 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCC
Confidence 456778999988776 54444566677888 5 567666666666666541 278899999 86543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.9e-06 Score=74.44 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=28.7
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++-=++++|.+++|+|++|||||||++.|++.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334578899999999999999999999999875
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=8.9e-06 Score=69.79 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=25.5
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 334455565 89999999999999999998554
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.73 E-value=2e-05 Score=69.23 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee-eEee
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-FAQT 133 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~-i~G~ 133 (382)
.+...+|.+++|+|++||||||+.+.|++.+. ..|.+. +++.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 45667899999999999999999999999988 677764 4543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.3e-05 Score=72.03 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=36.7
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc--eeeeEeec
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTS 134 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G--~I~i~G~~ 134 (382)
+.+++|.+++|+|++||||||+.+.|++.+. ..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 4567899999999999999999999999988 788 77787654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.70 E-value=1.6e-05 Score=73.06 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=29.7
Q ss_pred cccCCCCCC---ceeeeeeecccCCCchhHHHHHHHhhcccceee
Q 016817 88 IQKGGMDIP---PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVL 129 (382)
Q Consensus 88 L~~isl~i~---~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~ 129 (382)
|.++||.+. +|.+++|.||+||||||+++.|+..+...+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 777787776 899999999999999999999999876523443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.70 E-value=2.5e-06 Score=83.01 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=31.6
Q ss_pred HHHHHHHHh--cCCCCcchhhhhhccCcccccc---CCCCeEEEecCCC
Q 016817 231 IAEIYKALK--AGDSKPLDATKRLFSAPGLRKC---NENPILILTHGDM 274 (382)
Q Consensus 231 ~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~---~g~tiIiiTHd~~ 274 (382)
+|.+|++|| .+|+.....+...+.++ .. .+.++|++||++.
T Consensus 125 ~~~vlilDE~~~l~~~~~~~L~~~~~~~---~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 125 LYMFLVLDDAFNLAPDILSTFIRLGQEA---DKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp CCEEEEEETGGGSCHHHHHHHHHHTTCH---HHHSSCCEEEEEEESSTH
T ss_pred CeEEEEEECccccchHHHHHHHHHHHhC---CCCCcCCEEEEEEECCch
Confidence 367999999 88887778888888775 22 4678999999664
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=5.4e-07 Score=97.10 Aligned_cols=62 Identities=11% Similarity=-0.100 Sum_probs=43.4
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh----cCCCCcchhhhhhccCccccccCCCCeEE-EecCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK----AGDSKPLDATKRLFSAPGLRKCNENPILI-LTHGD 273 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIi-iTHd~ 273 (382)
..+.-+|+|+.+|..++++++.+++++|+|| +||......+++.+... .....+|++ .|||.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~---~~~~~iIl~SAT~~~ 252 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR---RPDLKIIIMSATLDA 252 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH---CTTCEEEEEESCSCC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh---CCCceEEEEeccccH
Confidence 4556689999999999999999999999999 36654444444444433 223456666 48853
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=2.6e-05 Score=82.57 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~ 167 (382)
|+++++|..++|+|++|+|||||++.|++... ..|+| .+|..+.+... .+ .+ +.+++.+|...++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~------~e---~~-~giti~~~~~~~~ 70 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTP------EA---KL-HRTTVRTGVAPLL 70 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSH------HH---HH-TTSCCSCEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCH------HH---Hh-cCCeEEecceEEe
Confidence 56788999999999999999999999998765 47888 56654433211 11 22 3788888875443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=3.4e-05 Score=67.85 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=26.6
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999999999999875
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.52 E-value=3.3e-05 Score=69.01 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=26.1
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999988663
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.7e-05 Score=70.63 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=35.3
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeec
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS 134 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~ 134 (382)
+.+.. ..+++.++.|+|++||||||+.+.|+..+. .|.+.+++..
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~ 67 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDS 67 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHH
Confidence 55554 677889999999999999999999998653 3456667653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.51 E-value=7.1e-06 Score=79.33 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=40.3
Q ss_pred CcccCCCCCCceee--eeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 87 GIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i~~Ge~--~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+++.++..++.|++ +.+.||+|+||||+++++++.+. ..+.+.+.+.+.
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 47777777888887 99999999999999999999987 667666665543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=8.8e-06 Score=79.93 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=35.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
.+.+.+.|++..|.... ++++++|+| +|+|+||+|||||++.|.|... ..|.+.
T Consensus 15 ~~~v~~~~l~~~~~~k~------~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKS------VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp ------CCHHHHHHTHH------HHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred CceEEeccchHHhCCee------ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 45789999999996543 588888876 8999999999999999988655 455443
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=4.6e-05 Score=68.57 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=25.9
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.++++.+| +.+|+|||||||||++.+|.-.+.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 334555565 899999999999999999975543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.43 E-value=4.9e-05 Score=67.47 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.37 E-value=7e-05 Score=66.54 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=27.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCC
Confidence 4589999999999999999999876 55566654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=3.7e-05 Score=75.34 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.7
Q ss_pred CcccCCCCCCceee--eeeecccCCCchhHHHHHHHhhc
Q 016817 87 GIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 87 vL~~isl~i~~Ge~--~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++.+++.+++|++ ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 57888889999988 99999999999999999999865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.33 E-value=7.4e-05 Score=64.61 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.1
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999853
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.32 E-value=8.7e-05 Score=70.83 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+-.++.+++|+|++|+|||||++.|.|.
T Consensus 4 ~~~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CCCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3345668999999999999999999986
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=5.5e-05 Score=67.01 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=29.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+++++|+..++++ ++|+|++|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 5899999999886 67999999999999999875
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.28 E-value=9.6e-05 Score=64.89 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=20.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 589999998877 568999999999999999987
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=64.40 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=28.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEee
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQT 133 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~ 133 (382)
.+++|+|+||||||||++.|.+.+. . -|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999999876 3 355555543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=9.6e-05 Score=74.19 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=29.6
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-------------ccceeeeEeec
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-------------RSGLVLFAQTS 134 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-------------~~G~I~i~G~~ 134 (382)
-.++|+|+||+|||||+|.|+|... .+|.+.++|++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3799999999999999999999742 25777777764
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.26 E-value=4.9e-06 Score=81.18 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=34.1
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i 130 (382)
|+.+.--+.+|+++.|.|++|+|||||+.-++.... ..+.|.+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 666666789999999999999999999999987655 3344433
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=63.18 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00015 Score=66.76 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=30.5
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
++++++.+++| +.|+||+|+|||||+++|++... + -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 66677788877 88999999999999999999875 3 35555543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=72.87 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=38.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+++++...|.... .++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 26 ~~l~e~v~~l~~~~------~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 26 EELKEVVEFLKDPS------KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHHHCTH------HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhChH------HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 34555555554332 488889999999 77999999999999999999764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00015 Score=61.97 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00014 Score=64.65 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-cccee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLV 128 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I 128 (382)
+++|.|++||||||+++.|+..+. ....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999999887 43344
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0002 Score=61.14 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++|+||+||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0002 Score=65.36 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+-++|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999854
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=9.6e-05 Score=68.31 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0002 Score=71.14 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=24.9
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.+..|..++|+|+||+|||||+|.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5667888999999999999999999987
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00036 Score=70.11 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=35.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
++.+++++||+||||||++..|++.+. ..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 588999999999999999999999998 7889988777654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00032 Score=69.07 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=30.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
.+..++|+||||||||||++.|++... ..+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 566789999999999999999998877 677777654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0003 Score=60.77 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.9
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00021 Score=70.09 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=26.7
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 45556677776 889999999999999999974
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0002 Score=70.36 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=21.2
Q ss_pred ceee-eeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVIT-ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~-~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.|-. ++|+|++|||||||+|.|+|...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3444 99999999999999999998753
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00027 Score=61.09 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|++|+|||||++.++|-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00034 Score=60.78 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.++.++.|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34567889999999999999999998544
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00039 Score=60.63 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00049 Score=60.47 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=26.4
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
..+++|+|++||||||+.+.|+.. |-..++.-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----CCEEEccc
Confidence 458999999999999999999975 66666543
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00037 Score=60.51 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=24.4
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
|.+++|.|++||||||+.+.|+..+...|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999997654333
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00029 Score=61.25 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00047 Score=61.81 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.0
Q ss_pred ceeeeeeecccCCCchhHHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00045 Score=60.65 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00039 Score=59.06 Aligned_cols=19 Identities=47% Similarity=0.868 Sum_probs=18.2
Q ss_pred eeeeecccCCCchhHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLM 118 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i 118 (382)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00049 Score=63.84 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+++|+||||||||||.+.|++-+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998653
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00048 Score=60.43 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++|+|++|||||||+..|.+.+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH
Confidence 789999999999999999999876
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00047 Score=59.62 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+||+||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999765
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00035 Score=63.69 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHH
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
.+.+|+.++++||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 345789999999999999999887754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00063 Score=59.10 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+..+.|+||+||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00058 Score=60.80 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=19.6
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|+||||||||||++.|..-.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999998875543
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00065 Score=59.83 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00062 Score=62.00 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=22.8
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G 126 (382)
.++|+|++|+|||||++.|.|... .+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 589999999999999999998755 444
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00074 Score=58.00 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00088 Score=59.13 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=27.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceee
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVL 129 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~ 129 (382)
+|.+++|.|+.||||||+.+.|+..+...|.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~ 35 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVY 35 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEE
Confidence 477899999999999999999998776445443
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00081 Score=63.70 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=28.9
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEe
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G 132 (382)
.-..|.++.|.|||||||||+.+.|+.-++ .|.+.+++
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 345678999999999999999999986432 35555554
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00082 Score=58.68 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00084 Score=59.19 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.5
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999865
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=58.97 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999997654
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00091 Score=59.30 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=25.2
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|.+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997665
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00096 Score=57.95 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998643
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00078 Score=63.90 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
+.+.++..+.|.||+|+|||||+++|++... .+-+.+++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~~ 83 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGP 83 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEhH
Confidence 3456677799999999999999999998754 344555543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.001 Score=57.65 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.8
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998665
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00087 Score=62.47 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|+|++|||||||++.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998743
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=61.03 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=27.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
...+.|.||+|+||||++++|++... ..|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 45789999999999999999999987 566544
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00092 Score=57.77 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=18.3
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0013 Score=57.00 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.8
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.+.+-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999753
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0013 Score=57.61 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.+.+++|+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0017 Score=56.33 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=24.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLF 130 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i 130 (382)
+++|.|+.||||||+.+.|+..+...|-..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5899999999999999999987653344333
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0021 Score=55.70 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0014 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0015 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0015 Score=62.00 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=20.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999998654
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0016 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0016 Score=54.26 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++++|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0017 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=56.56 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-....+++|.|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999998543
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0016 Score=58.79 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=22.2
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998643
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0017 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0018 Score=55.38 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0017 Score=54.54 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0018 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0018 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=56.78 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.0
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999999998765
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.002 Score=57.75 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999998754
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0019 Score=58.07 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0019 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0019 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0017 Score=54.60 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.5
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999987
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0019 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.002 Score=54.79 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0019 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999875
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0016 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4889999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.002 Score=55.89 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=56.29 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0029 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.5
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999998765
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0021 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0021 Score=54.71 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.002 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.002 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998754
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0027 Score=58.87 Aligned_cols=31 Identities=29% Similarity=0.619 Sum_probs=25.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccce
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGL 127 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~ 127 (382)
++.++.|+|++||||||+.+.|+..+...|.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~ 33 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNI 33 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999987553343
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0013 Score=55.20 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=19.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3789999999999999998764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0018 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.6
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0023 Score=53.62 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0019 Score=60.62 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0023 Score=54.69 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=21.6
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0023 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0023 Score=55.17 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999985
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0026 Score=58.58 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+++|.|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987543
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0024 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.-.++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999863
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0021 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0025 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0024 Score=55.35 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0025 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=19.8
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
-.++|+|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999976
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0025 Score=53.99 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0027 Score=64.36 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=34.6
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeE
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~ 131 (382)
++.+ +.+-+|+..+|+||+|+|||||++.|++-.. ..|.|.+.
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~ 185 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVF 185 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEE
Confidence 4444 5666899999999999999999999998877 56666543
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0014 Score=63.03 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=29.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
.+++..+.+ .|.-++|+|+||+|||||...+.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 488888888 588899999999999999999987
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0027 Score=53.20 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.2
Q ss_pred eeeecccCCCchhHHHHHHHh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl 121 (382)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0026 Score=56.63 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
..-+++|+|+.||||||+.+.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999875
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0018 Score=56.07 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.4
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998864
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0027 Score=62.29 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred eeeeeeecccCCCchhHHHHHHH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
|-.++|+|.+|+|||||++.|.|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34689999999999999999998
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0027 Score=60.92 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=25.4
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999876
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0038 Score=62.68 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=33.9
Q ss_pred CCCCce--eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 93 MDIPPV--ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 93 l~i~~G--e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
|.+.++ .+++|+|++|+||||++..|++.+. ...+|.+-..|.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 555534 5999999999999999999999888 556677665554
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0027 Score=54.74 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998665
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0018 Score=55.10 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999763
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.003 Score=61.26 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=26.7
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-+++|+++.|.||+|||||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999999863
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0032 Score=57.85 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++-+++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998544
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0029 Score=60.70 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=26.9
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+++|+++.|.||+|||||||+..++....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 578999999999999999999999987643
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0029 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5889999999999999999874
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0029 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998743
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0029 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0028 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0029 Score=54.61 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0016 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=20.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999988863
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0031 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.5
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|+.|+|||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.004 Score=56.35 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=26.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
.+|.+++|.|+.||||||+++.|...+...|
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999998776444
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0032 Score=53.61 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0035 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0033 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0031 Score=61.94 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0034 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=18.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999876653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0034 Score=54.41 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0034 Score=56.72 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0053 Score=60.01 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=30.1
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-cccee-eeEe
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-LFAQ 132 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I-~i~G 132 (382)
+++|+++.|.||+|+|||||...++.... ..+.+ +++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 77999999999999999999988887655 43344 4444
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0038 Score=58.76 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
..-+++|.|++||||||+.+.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0032 Score=60.01 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.| +++|+|++|+|||||++.+.|-
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 345 6999999999999999999975
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0035 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0035 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0036 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0036 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.5
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0038 Score=58.39 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++..+.|.||+|+|||||++.+++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 355688999999999999999998653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0037 Score=54.09 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0024 Score=59.62 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987643
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0026 Score=58.66 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=26.8
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.+.++..+.| +.|.||+|+|||||++.|+...
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 44555666666 7799999999999999999854
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0034 Score=58.27 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999863
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0038 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0039 Score=53.22 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998863
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0041 Score=55.31 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|+|+.|+|||||++.+++-..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999988654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0036 Score=57.50 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0043 Score=56.83 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=22.8
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+|.++.|.|++||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999998776
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0039 Score=54.63 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34468999999999999999999743
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0049 Score=58.61 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+..+.|.||+|+|||||++.|++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345688999999999999999998876
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0043 Score=57.21 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=25.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSR 124 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~ 124 (382)
+|.+++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999988763
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0042 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0049 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.5
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998764
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0042 Score=55.50 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998744
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0042 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0045 Score=59.00 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.1
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-+++|+|+.|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999984
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0042 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0045 Score=60.15 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997653
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0046 Score=56.03 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=26.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
+|.++.|-|++||||||+++.|...+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999998877445
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0043 Score=55.30 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0044 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0066 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999863
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0045 Score=52.72 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.2
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999885
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0045 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0045 Score=54.33 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0051 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
|-++.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0048 Score=54.39 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=24.4
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
..++.|.-..--.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4455555444557899999999999999999873
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0046 Score=54.80 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0052 Score=55.41 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=26.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
.++..-+.+. |..+.|+||+|||||||...|+.
T Consensus 24 ~lHa~~v~~~-g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 24 SMHGVLVDIY-GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CEESEEEEET-TEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeeEEEEEEC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 3566555654 77899999999999999988875
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0052 Score=59.65 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++.++.|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56789999999999999999998644
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.005 Score=57.74 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0049 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0037 Score=53.77 Aligned_cols=25 Identities=16% Similarity=0.502 Sum_probs=21.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999998863
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.005 Score=53.09 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=20.6
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0044 Score=53.29 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999863
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.005 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3446899999999999999999864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0049 Score=54.08 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=20.5
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0046 Score=58.36 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.3
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.005 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.5
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999874
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0045 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0047 Score=57.79 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.9
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|..|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999863
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0051 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.0
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.=.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0023 Score=56.88 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-.++|+|++|+|||||++.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0028 Score=55.72 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0047 Score=53.28 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=19.8
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
-.++|+|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999985
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0051 Score=57.09 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0046 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.4
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0056 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0061 Score=58.68 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.8
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.+++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998644
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0063 Score=55.18 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0075 Score=54.84 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+-..++..++.|+||.||||||..+.|+--+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45567788999999999999999999997654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0061 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5889999999999999988864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0073 Score=56.02 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=22.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++.-+.|.||+|+|||||++.++....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 344488999999999999999998653
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0065 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||.|+|||||++.++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44578999999999999999998764
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0049 Score=55.37 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.5
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0041 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=9.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0063 Score=53.38 Aligned_cols=22 Identities=18% Similarity=0.384 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0068 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0067 Score=60.35 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.-....++.|+|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3345789999999999999999998753
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0041 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.3
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0036 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0073 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+|.+++|.|+.||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998765
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0085 Score=54.74 Aligned_cols=31 Identities=35% Similarity=0.552 Sum_probs=27.2
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcc-cc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR-SG 126 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~-~G 126 (382)
.+|.+++|.|++||||||+.+.|...+.. .|
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g 50 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG 50 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccC
Confidence 46899999999999999999999987764 55
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0082 Score=54.52 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.8
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR 124 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~ 124 (382)
.+|.++.+-|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987664
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0069 Score=52.49 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0063 Score=56.51 Aligned_cols=23 Identities=52% Similarity=0.609 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999743
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0064 Score=56.74 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|..|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0072 Score=58.32 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.6
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
..+.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0059 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.4
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999985
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0066 Score=56.17 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=20.7
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999743
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0061 Score=53.26 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=19.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999988763
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.006 Score=53.97 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.006 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.=.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999853
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0077 Score=53.68 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|+|++|+|||||++-+++-..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999987654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0051 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.563 Sum_probs=20.6
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998763
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0083 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.|.||+|+|||||++.++....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999998765
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.23 E-value=0.004 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=4.7
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36889999999999999998865
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.014 Score=58.80 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=31.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
++.+++++|++|+||||++..|+..+. ...+|.+-..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467999999999999999999999888 555676655443
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0073 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=22.4
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-.++++|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998654
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+.|.||+|+|||||++.++....
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 377999999999999999998653
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0042 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.|.||+|+|||||++.+++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999875
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.009 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0061 Score=53.23 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.01 Score=56.92 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=21.9
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
..+++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0094 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.1
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36889999999999999988853
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0097 Score=53.13 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.01 Score=59.49 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||+|+|||||+++|++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999775
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.016 Score=51.02 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=20.5
Q ss_pred ceeeeeeecccCCCchhHH-HHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLV-NLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl-~~i~Gl 121 (382)
+|.++.+.||.||||||++ +++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 555444
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.0094 Score=56.95 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=31.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3777776789999999999999999999988886544
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.017 Score=48.33 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.-+.|.||+|+|||++.+.|.....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 34588999999999999999987654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.87 E-value=0.006 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.4
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999988654
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=51.84 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=25.4
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
++..-+.+. |.-+.|.|+||+|||||...+..
T Consensus 7 lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 555555554 77799999999999999887765
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.011 Score=52.61 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999998864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.0094 Score=53.58 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998863
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.0072 Score=60.72 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0039 Score=55.24 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998853
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.0092 Score=56.86 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-+++|+++.|.||+|+|||||+..++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988864
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.009 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=19.7
Q ss_pred ceeeeeeecccCCCchhHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
+.=.++|+|+.|+|||||++.+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34468999999999999999885
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.021 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.6
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998853
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.023 Score=55.07 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=27.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
+.-+++|+|+.|+|||||++.|++.+. ..-+|.+-.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 345899999999999999999998876 333444433
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.014 Score=57.95 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.6
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999986543
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=59.95 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=30.0
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc---eeeeEee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG---LVLFAQT 133 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G---~I~i~G~ 133 (382)
..|-++.|.|++||||||+.+.|+..+...| .+.+++.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 4577899999999999999999998766434 3556653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=55.34 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=24.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566799999999999999999998765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.016 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+-.++++|.+|+|||||+|.|.|-.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 4468999999999999999999864
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.025 Score=50.70 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.5
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999998765
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.018 Score=53.87 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++..+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.0071 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3588999999999999988864
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.0046 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
=.++|+|++|+|||||++.+.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999988764
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.018 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.8
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|.||.|+|||||++.++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999997654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=51.48 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999997654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.29 E-value=0.012 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHH-HHHhh
Q 016817 100 TILLMGFSGSGKSSLVNL-MYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~-i~Gl~ 122 (382)
.++|+|+.|+|||||++. +.|-.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 588999999999999998 66653
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.019 Score=60.16 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccc--eeeeEeec
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG--LVLFAQTS 134 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G--~I~i~G~~ 134 (382)
+|.++.|+|.+||||||+.+.|+..+...| .+.++|..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 477899999999999999999998764223 44555543
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.022 Score=54.07 Aligned_cols=25 Identities=48% Similarity=0.647 Sum_probs=21.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.+-.++|+|+.|+|||||++.+.+-
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.036 Score=53.01 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=27.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecC
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i 135 (382)
+..-+.|.||.|+|||||++.++.......-+.+++.++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 344588999999999999999998763222344555443
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.017 Score=56.45 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..++++|++|+|||||+|.|.|-..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~ 187 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEAT 187 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhcc
Confidence 45799999999999999999999854
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.015 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.3
Q ss_pred CCceeeeeeecccCCCchhHHHHHH
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
+++|+++.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999976554
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.028 Score=53.96 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=28.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
+|..+.|.||.|+|||||++.++.... ....+.+.+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999999999999998876 4444455443
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.028 Score=56.22 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=34.2
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeE
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFA 131 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~ 131 (382)
|+.+.--+++|+++.|.|++|+|||||+.-++.-.. ..| .+.+.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 555554588999999999999999999999988765 434 44443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.027 Score=51.98 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+...+.|.||+|+|||||++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344568899999999999999999764
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.019 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++..++++|.+|+|||||+|.|.|-..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~ 185 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFS 185 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhc
Confidence 356789999999999999999999753
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.024 Score=54.82 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=22.6
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||+|+||||+.+.|+....
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 44688999999999999999998763
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.026 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.9
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.-+.|.||+|+|||||++.++....
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577999999999999999998763
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.025 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.|-.++|+|+.|+|||||+|.+.|-.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34459999999999999999999864
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.037 Score=54.82 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=24.6
Q ss_pred cccCCCCCC-ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 88 IQKGGMDIP-PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 88 L~~isl~i~-~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.++.+... ....+.|+|++||||||+++.+.--.
T Consensus 42 ~g~~~~~~~~~~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 42 VAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp ETTEECCGGGGGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred ECcEEcccccCcceEEEECCCCCCHHHHHHHHHHHH
Confidence 444444332 35578999999999999987665443
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.021 Score=56.55 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.6
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|.+|+|||||+|.|.|-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3789999999999999999875
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.033 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.|.||.|+|||+|.+.|+...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999999876
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.016 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|..|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.018 Score=57.48 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.3
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.026 Score=58.28 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|..|+|||||+|.|.|-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.03 Score=57.26 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=26.3
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcc-cc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR-SG 126 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~-~G 126 (382)
+.|-++.|+|.+||||||+-+.|+..+.. .|
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g 424 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGG 424 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCS
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhc
Confidence 45678999999999999999999988763 44
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.029 Score=54.94 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
-+++|+++.|.||.|+|||||...++.-.. ..+.+.+-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 367899999999999999999987776554 445555443
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.031 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+||+||.||||||+.+.|+.-+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=93.46 E-value=0.056 Score=55.21 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=26.3
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc-eeee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG-LVLF 130 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G-~I~i 130 (382)
.+..+++|+|++||||||+++.|+..+...| ++.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVll 134 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCL 134 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 4567899999999999999999997766323 3444
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.038 Score=53.09 Aligned_cols=26 Identities=19% Similarity=0.574 Sum_probs=23.0
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||.|+|||||++.++....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 44789999999999999999998764
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.037 Score=52.65 Aligned_cols=26 Identities=38% Similarity=0.360 Sum_probs=22.9
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999997654
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.032 Score=55.80 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=27.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.+..++| +.|.||.|+|||+|.++|++...
T Consensus 198 ~~~~g~~~prG--iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 198 YEQIGIDPPRG--VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp HHHHCCCCCCE--EEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 44455666777 78999999999999999998764
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.039 Score=49.91 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++...+.|.||.|+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6665568899999999999999999875
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.039 Score=53.45 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=22.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+...+.|.||+|+|||||++.|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 344588999999999999999998653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.035 Score=55.71 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=27.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+....+..++| +.|.||.|+|||+|.++|++...
T Consensus 207 f~~~g~~~prG--vLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 207 FQRVGIKPPKG--VLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HHHHCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCe--EEEECCCCCcHHHHHHHHHHHhC
Confidence 45555666777 77999999999999999999764
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.038 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=22.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.|.||+|+|||||++.|+....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 478999999999999999999876
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.17 E-value=0.04 Score=52.42 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..-+.|.||.|+|||||++.++....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 34588999999999999999998754
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.034 Score=57.95 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+--+++|+|+.|+|||||+|.|.|-.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 44678999999999999999999853
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.058 Score=49.11 Aligned_cols=28 Identities=14% Similarity=-0.038 Sum_probs=21.8
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+|.++.+.||.|+||||++.-++.-+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999997765554444
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.037 Score=55.44 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.7
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+....+..++| +.|.||.|+|||+|.++|++...
T Consensus 207 f~~~g~~~prG--vLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 207 FKDMGIRAPKG--ALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HHHHCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCe--eEEECcCCCCHHHHHHHHHHHhC
Confidence 45555666667 77999999999999999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 382 | ||||
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 3e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.003 |
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 14/136 (10%), Positives = 38/136 (27%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
TI L G+ SGK ++ + L++ G + H ++ + R
Sbjct: 7 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQ 66
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218
+ + ++ + ++ L+ ++ + S K
Sbjct: 67 RIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG 126
Query: 219 LRRVDFAMVVSNIAEI 234
+ + +
Sbjct: 127 IYAAARRGEIKGFTGV 142
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 36.2 bits (82), Expect = 0.003
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 15/124 (12%)
Query: 101 ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160
+LMG SGSGKS++ + + L + L N+ +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGD-------------FLHPRRNIEKMASGEPL 55
Query: 161 VYDSRGFNYNRVHEGLEELSSWMSEGVHHN--QRCLRSDDCALMKNDAEIDDLKSSPKYV 218
D R +++ + + + D + LK +
Sbjct: 56 NDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVI 115
Query: 219 LRRV 222
R+
Sbjct: 116 ESRL 119
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.69 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.62 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.58 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.73 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.72 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.71 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.64 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.58 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.51 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.43 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.42 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.39 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.39 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.37 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.32 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.23 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.21 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.2 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.18 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.17 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.15 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.13 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.13 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.11 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.1 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.03 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.01 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.01 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.92 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.87 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.85 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.83 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.82 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.82 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.81 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.77 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.73 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.72 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.7 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.7 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.66 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.65 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.63 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.63 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.62 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.56 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.55 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.55 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.52 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.5 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.49 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.49 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.47 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.46 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.43 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.42 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.4 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.4 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.4 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.4 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.38 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.36 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.34 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.3 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.27 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.23 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.22 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.21 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.2 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.19 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.17 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.16 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.16 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.15 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.14 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.13 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.08 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.07 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.03 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.03 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.03 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.0 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.97 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.95 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.94 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.94 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.93 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.88 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.87 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.8 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.77 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.74 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.72 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.7 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.69 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.69 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.68 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.66 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.66 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.65 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.65 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.6 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.59 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.56 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.56 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.56 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.49 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.49 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.48 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.46 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.45 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.43 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.39 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.34 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.29 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.28 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.28 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.21 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.21 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.2 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.2 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.19 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.15 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.15 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.13 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.12 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.11 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.11 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.1 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.09 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.07 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.05 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.02 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.02 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.02 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.01 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.0 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.99 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.96 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.94 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.94 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.88 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.87 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.85 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.76 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.74 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.74 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.7 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.7 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.65 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.63 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.59 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.51 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.49 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.49 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.48 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.38 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.37 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.36 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.3 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.29 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.28 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.15 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.15 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.13 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.12 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.06 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.03 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.91 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.86 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.82 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.8 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.69 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.68 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.65 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.56 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.5 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.41 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.41 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.31 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.25 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.15 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.14 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.08 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.9 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.64 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.62 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.61 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 92.51 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.99 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.82 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.53 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.46 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 91.38 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.3 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.11 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 91.06 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.97 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.96 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.86 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.84 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.0 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.68 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.19 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.98 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.53 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 88.08 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 88.04 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 87.86 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 87.37 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.96 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.89 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 86.63 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.62 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.24 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 85.23 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 84.97 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 84.89 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.69 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 84.46 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.11 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.41 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 83.1 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.26 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.13 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.06 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 81.83 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 81.06 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 80.63 |
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-57 Score=422.40 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=192.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||+|+|+.+...++ ||+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 mi~v~nlsk~y~~~~~~~~--al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~----- 73 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS----- 73 (240)
T ss_dssp CEEEEEEEEEEECSSCEEE--EEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTC-----
T ss_pred CEEEEeEEEEeCCCCeeEE--EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCC-----
Confidence 5789999999987654432 7999999999999999999999999999999999999 8999999999876433
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+...+|+ ++|||||++.+|+.+||.||+.+.....+. ....++++.++++.+||.+.. +++|++|||||||||+
T Consensus 74 -~~~~~~~rr-~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 74 -ESELTKARR-QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp -HHHHHHHHH-HEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-SSCBSCCCHHHHHHHH
T ss_pred -hhhhhhhhc-cccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHH
Confidence 344555775 899999999999999999999876543332 222345678899999999775 4999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+|||+++|++ +..++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~--~~~g~tvi~vTHdl~~--~~~~~dri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDIN--RRLGLTILLITHEMDV--VKRICDCVAVISNGELIEQDTVS 226 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHH--HHHCCEEEEEBSCHHH--HHHHCSEEEEEETTEEEEEEETT
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHH--hccCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999 999999999999999993 5569999999996666 9999999999987 7788888
Q ss_pred ceeeEE
Q 016817 298 GVYDIV 303 (382)
Q Consensus 298 ~v~~~~ 303 (382)
++|+.|
T Consensus 227 ei~~~P 232 (240)
T d3dhwc1 227 EVFSHP 232 (240)
T ss_dssp TTTCSS
T ss_pred HHHhCC
Confidence 888543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-57 Score=417.97 Aligned_cols=213 Identities=14% Similarity=0.101 Sum_probs=150.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++||+|+|+.. . +|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+.
T Consensus 1 Iev~nv~k~yg~~--~----~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~----- 69 (232)
T d2awna2 1 VQLQNVTKAWGEV--V----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP----- 69 (232)
T ss_dssp EEEEEEEEEETTE--E----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG-----
T ss_pred CEEEEEEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch-----
Confidence 5789999999543 2 6999999999999999999999999999999999999 89999999998764432
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.| +.||||||++.+|+++||+||+.+.....+ .....++++.++++.++|.+..+ ++|++|||||||||+|
T Consensus 70 ------~~-r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-~~~~~LSGGqkQRvai 141 (232)
T d2awna2 70 ------AE-RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAI 141 (232)
T ss_dssp ------GG-TCEEEECSSCCC---------------------CHHHHHHHHHHHHC----------------------CH
T ss_pred ------hh-ceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhh-CChhhCCHHHHHHHHH
Confidence 22 489999999999999999999987654333 22233466888999999997654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+++|++||||| +|||.++..+++.|+++. ++.|+|||+||||++. +..+|||+++|++ +..+++.+
T Consensus 142 AraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~--~~~g~tii~vTHd~~~--a~~~~dri~vm~~G~iv~~G~~~e 217 (232)
T d2awna2 142 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH--KRLGRTMIYVTHDQVE--AMTLADKIVVLDAGRVAQVGKPLE 217 (232)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHSCCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999 999999999999999983 6679999999996655 9999999999987 66778888
Q ss_pred eeeE
Q 016817 299 VYDI 302 (382)
Q Consensus 299 v~~~ 302 (382)
+|+.
T Consensus 218 l~~~ 221 (232)
T d2awna2 218 LYHY 221 (232)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 8743
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.7e-57 Score=418.70 Aligned_cols=221 Identities=11% Similarity=0.074 Sum_probs=186.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+++||+|+|+.+... ||+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++...+.
T Consensus 3 ~i~v~nlsk~y~~g~~~----aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~---- 74 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVV----ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK---- 74 (242)
T ss_dssp CEEEEEEEEEEGGGTEE----EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTE----
T ss_pred EEEEEeEEEEECCCCEE----EEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCch----
Confidence 47889999999766543 5999999999999999999999999999999999999 89999999997753221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
......| ++||||||++.+||++||+||+.+.....+. ....++++.++++.+||.+.. +++|++|||||||||+
T Consensus 75 --~~~~~~r-r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 75 --LIVPPED-RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVA 150 (242)
T ss_dssp --ESSCGGG-SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHH
T ss_pred --hhcchhh-ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhh-hCChhhCCHHHHhHHH
Confidence 1112233 4899999999999999999999876533221 122346688899999998765 4999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+++|++||||| +|||.++..++++|+++. ++.|+|+|+||||++. +.++||++++|++ +..++++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~--~~~g~tvi~vTHd~~~--~~~~~dri~vm~~G~iv~~g~~~ 226 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVSHDPAD--IFAIADRVGVLVKGKLVQVGKPE 226 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH--HHHCCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHH--hccCCEEEEEECCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 5569999999996665 9999999999987 6777888
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
++|+.
T Consensus 227 el~~~ 231 (242)
T d1oxxk2 227 DLYDN 231 (242)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 88753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1e-56 Score=417.78 Aligned_cols=214 Identities=12% Similarity=0.059 Sum_probs=177.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+++||+|+|++.. ||+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 6 ~I~v~nlsk~yg~~~------al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~---- 75 (239)
T d1v43a3 6 EVKLENLTKRFGNFT------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---- 75 (239)
T ss_dssp CEEEEEEEEEETTEE------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG----
T ss_pred eEEEEEEEEEECCEE------EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc----
Confidence 478999999996432 6999999999999999999999999999999999999 89999999998865432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ ++||||||++.+|+++||+||+.+.....+. ....++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 76 -------~~-r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRva 146 (239)
T d1v43a3 76 -------KD-RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVA 146 (239)
T ss_dssp -------GG-GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHH
T ss_pred -------cc-ceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHH
Confidence 12 3799999999999999999999765433221 1123456778999999997655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +|||.++..++++|+++. ++.|+|+|+||||++. +.++||+|++|++ +..++++
T Consensus 147 iAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~--~~~g~tii~vTHd~~~--a~~~~dri~vm~~G~iv~~G~~~ 222 (239)
T d1v43a3 147 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ--QKLKVTTIYVTHDQVE--AMTMGDRIAVMNRGQLLQIGSPT 222 (239)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHH--HhcCCeEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 5569999999996665 9999999999987 7778888
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
++|+.
T Consensus 223 el~~~ 227 (239)
T d1v43a3 223 EVYLR 227 (239)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 88854
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.8e-56 Score=410.96 Aligned_cols=212 Identities=19% Similarity=0.200 Sum_probs=179.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||+|+|+.+...+. ||+||||+|++||++||+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 1 mI~i~nlsk~y~~~~~~~~--al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~----- 73 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIY--ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD----- 73 (230)
T ss_dssp CEEEEEEEEEEEETTEEEE--EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC-----
T ss_pred CEEEEeEEEEeCCCCeeEE--EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCC-----
Confidence 5789999999987665442 7999999999999999999999999999999999999 8999999999876433
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Ccc---ccccccccCccccccccccccccCCCccceee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVH---HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+...+|+++||||||++.+|+.+||.||+.+....... ... ..+++.++++.++|.+...+++|++|||||||
T Consensus 74 -~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQ 152 (230)
T d1l2ta_ 74 -DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ 152 (230)
T ss_dssp -HHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH
T ss_pred -hhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHH
Confidence 3445556666899999999999999999999875432211 112 12446667888999765556999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+++|++||||| +||+.++..++++|+++. ++.|+|||+||||++. + ++||||++|++
T Consensus 153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~--~~~g~tii~vTHd~~~--a-~~~drv~~m~~ 220 (230)
T d1l2ta_ 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN--EEDGKTVVVVTHDINV--A-RFGERIIYLKD 220 (230)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCCEEEEECSCHHH--H-TTSSEEEEEET
T ss_pred HHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHH--HhhCCEEEEECCCHHH--H-HhCCEEEEEEC
Confidence 9999999999999999999 999999999999999983 5679999999997654 6 58999999987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7e-56 Score=409.70 Aligned_cols=211 Identities=15% Similarity=0.174 Sum_probs=184.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||||+|++ . +|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+.+.
T Consensus 1 mi~v~nlsk~y~~-~------aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~---- 69 (229)
T d3d31a2 1 MIEIESLSRKWKN-F------SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP---- 69 (229)
T ss_dssp CEEEEEEEEECSS-C------EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH----
T ss_pred CEEEEEEEEEeCC-E------EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch----
Confidence 5789999999954 2 5999999999999999999999999999999999999 89999999998864331
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.| +.+|||||++.+|+++||+||+.+..... +....+++.++++.+++.+..+ ++|.+|||||||||+|
T Consensus 70 -------~~-r~ig~v~Q~~~l~~~~tV~enl~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGG~~QRvai 138 (229)
T d3d31a2 70 -------EK-HDIAFVYQNYSLFPHMNVKKNLEFGMRMK--KIKDPKRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVAL 138 (229)
T ss_dssp -------HH-HTCEEECTTCCCCTTSCHHHHHHHHHHHH--CCCCHHHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHH
T ss_pred -------hH-hcceeeccccccCccccHHHHHHHHHhhc--cccHHHHHHHHHHHhcchhhHh-CChhhCCHHHhcchhh
Confidence 23 38999999999999999999998765332 3344567888999999987765 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+++|++||||| +|||.++..++++|+++. ++.|.|||+||||++. +.++||||++|++ +..+++++
T Consensus 139 AraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~--~~~g~tii~vtHd~~~--~~~~~drv~vm~~G~iv~~g~~~e 214 (229)
T d3d31a2 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH--KKNKLTVLHITHDQTE--ARIMADRIAVVMDGKLIQVGKPEE 214 (229)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH--HHTTCEEEEEESCHHH--HHHHCSEEEEESSSCEEEEECHHH
T ss_pred hhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHH--hcCCcEEEEEcCCHHH--HHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999 999999999999999983 5679999999996555 9999999999987 67778888
Q ss_pred eeeE
Q 016817 299 VYDI 302 (382)
Q Consensus 299 v~~~ 302 (382)
++..
T Consensus 215 l~~~ 218 (229)
T d3d31a2 215 IFEK 218 (229)
T ss_dssp HHSS
T ss_pred HHhC
Confidence 8743
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.5e-56 Score=414.67 Aligned_cols=220 Identities=10% Similarity=0.069 Sum_probs=186.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+++||+|+|++. . ||+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 3 ~i~v~nl~k~yg~~--~----al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~---- 72 (240)
T d1g2912 3 GVRLVDVWKVFGEV--T----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK---- 72 (240)
T ss_dssp EEEEEEEEEEETTE--E----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG----
T ss_pred cEEEEeEEEEECCE--E----EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccch----
Confidence 47899999999643 2 6999999999999999999999999999999999999 89999999997643322
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
......++++||||||++.+|+.+||.||+.+.....+. ....++++.++++.+++.+.. +++|++|||||||||+
T Consensus 73 --~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~-~~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 73 --GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVA 149 (240)
T ss_dssp --TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHHH
T ss_pred --hhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHH
Confidence 111113335899999999999999999999887644431 222345688899999998765 4999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+++|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +.++||+|++|++ +..++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~--~~~g~tvi~vTHd~~~--~~~~~drv~vm~~G~iv~~G~~~ 225 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ--RQLGVTTIYVTHDQVE--AMTMGDRIAVMNRGVLQQVGSPD 225 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHH--hccCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 5569999999996655 9999999999987 6677888
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
++++.
T Consensus 226 el~~~ 230 (240)
T d1g2912 226 EVYDK 230 (240)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 88743
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.1e-54 Score=407.60 Aligned_cols=225 Identities=12% Similarity=0.068 Sum_probs=186.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce--
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI-- 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~-- 142 (382)
.|+++||+|+|++.. ||+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++...+...
T Consensus 2 ~Lev~nl~k~yg~~~------al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHE------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEETTEE------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred eEEEEEEEEEECCEE------EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchh
Confidence 478999999996432 6999999999999999999999999999999999999 8999999999886433211
Q ss_pred --eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCccce
Q 016817 143 --TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 143 --~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
..........|+ ++|||||++.+|+.+||.+|+.+....... .....+++.++++.+++.+...+++|.+|||||
T Consensus 76 ~~~~~~~~~~~~r~-~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~ 154 (258)
T d1b0ua_ 76 LKVADKNQLRLLRT-RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 154 (258)
T ss_dssp EEESCHHHHHHHHH-HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred cccccHhHHHHHhc-ceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHH
Confidence 111222333444 899999999999999999999876433221 112235677889999998765568999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
||||+|||||+.+|++||||| +||+.++..++++|+++ +++|+|||+||||++. +.++||||++|++ +.
T Consensus 155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l---~~~g~til~vtHdl~~--~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL---AEEGKTMVVVTHEMGF--ARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH---HHTTCCEEEECSCHHH--HHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhh---cccCCceEEEeCCHHH--HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999 99999999999999998 3469999999996666 9999999999987 77
Q ss_pred cccccceeeE
Q 016817 293 VSEISGVYDI 302 (382)
Q Consensus 293 ~~~~~~v~~~ 302 (382)
.++++++|..
T Consensus 230 ~g~~~ev~~~ 239 (258)
T d1b0ua_ 230 EGDPEQVFGN 239 (258)
T ss_dssp EECHHHHHHS
T ss_pred EcCHHHHHhC
Confidence 7888888843
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.3e-53 Score=398.56 Aligned_cols=223 Identities=11% Similarity=0.055 Sum_probs=181.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+.+|+++||+|+|++.. ||+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 4 d~~Lev~~l~k~yg~~~------al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~-- 75 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIH------AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA-- 75 (240)
T ss_dssp SEEEEEEEEEEEETTEE------EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH--
T ss_pred ceEEEEeeEEEEECCEE------EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccH--
Confidence 56899999999996432 6999999999999999999999999999999999999 89999999998764331
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-cccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~LSGGqkQR 221 (382)
.. .++..++|+||++.+|+.+||+||+.............++.+.++++.+ ++.+..+ +++++||||||||
T Consensus 76 ----~~---~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~LSGG~~Qr 147 (240)
T d1ji0a_ 76 ----HV---INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQM 147 (240)
T ss_dssp ----HH---HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHH
T ss_pred ----HH---HHHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHh-CchhhCCHHHHHH
Confidence 11 1123689999999999999999999654322211111223344455555 6776654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+++|++||||| +|||.++..++++|+++ +++|+|||+||||++. +.++||||++|++ +..++
T Consensus 148 v~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l---~~~g~til~~tH~l~~--~~~~~drv~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI---NQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCCEEEEESCHHH--HHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999 99999999999999998 4469999999996555 9999999999987 67778
Q ss_pred ccceeeEEEecc
Q 016817 296 ISGVYDIVCLTE 307 (382)
Q Consensus 296 ~~~v~~~~~l~~ 307 (382)
++++++.+.+.+
T Consensus 223 ~~el~~~~~v~~ 234 (240)
T d1ji0a_ 223 ASELLDNEMVRK 234 (240)
T ss_dssp HHHHHTCHHHHH
T ss_pred HHHHhcCHHHHH
Confidence 888876554433
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.3e-52 Score=389.46 Aligned_cols=214 Identities=11% Similarity=0.033 Sum_probs=177.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++||+++|++.. ||+||||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++...+.
T Consensus 3 ~iL~v~nlsk~yg~~~------aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~--- 73 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFK------ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP--- 73 (254)
T ss_dssp EEEEEEEEEEEETTEE------EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH---
T ss_pred ceEEEEEEEEEECCeE------EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhH---
Confidence 3789999999996433 6999999999999999999999999999999999999 89999999998764332
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh---------hh-cCccc----cccccccCcccccccccccc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW---------MS-EGVHH----NQRCLRSDDCALMKNDAEID 209 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~---------~~-~~~~~----~~~~~~~l~~~~L~~~~~~~ 209 (382)
.+ .++..|+|+||++.+|+.+||.||+...... +. ..... .+++.++++.+++.+.. ++
T Consensus 74 ---~~---~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~ 146 (254)
T d1g6ha_ 74 ---AE---LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-DR 146 (254)
T ss_dssp ---HH---HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-TS
T ss_pred ---HH---HHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-cC
Confidence 12 2223799999999999999999999754211 11 11111 13455678888998665 49
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
++.+|||||||||+|||||+.+|++||||| +||+..+..++++|+++ +++|+|||+||||++. +.++||||+
T Consensus 147 ~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l---~~~g~til~vsHdl~~--~~~~~Drv~ 221 (254)
T d1g6ha_ 147 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL---KAKGITFLIIEHRLDI--VLNYIDHLY 221 (254)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECSCCST--TGGGCSEEE
T ss_pred chhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCcHHH--HHHhCCEEE
Confidence 999999999999999999999999999999 99999999999999998 4579999999996666 999999999
Q ss_pred hhhh---cccccccce
Q 016817 287 ICEY---LGVSEISGV 299 (382)
Q Consensus 287 ll~~---~~~~~~~~v 299 (382)
+|++ +..++++++
T Consensus 222 vm~~G~iv~~g~~~e~ 237 (254)
T d1g6ha_ 222 VMFNGQIIAEGRGEEE 237 (254)
T ss_dssp EEETTEEEEEEESHHH
T ss_pred EEeCCEEEEEecHHHH
Confidence 9987 556665553
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.5e-51 Score=381.39 Aligned_cols=212 Identities=12% Similarity=0.129 Sum_probs=181.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+++||+|+|+... ||+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+
T Consensus 2 aI~v~nl~k~yg~~~------vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~----- 70 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKE------ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP----- 70 (238)
T ss_dssp CEEEEEEEEEETTEE------EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-----
T ss_pred CEEEEeEEEEECCEE------EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccCh-----
Confidence 478999999996433 6999999999999999999999999999999999999 8999999999865322
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+|+ .+||+||++.+|+++|+.||+.+....+... ....+.++++++.+++.+... +++.+|||||||||+
T Consensus 71 -----~~~~~-~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lSgG~~qrv~ 143 (238)
T d1vpla_ 71 -----HEVRK-LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLL 143 (238)
T ss_dssp -----HHHHT-TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHH
T ss_pred -----HHHHh-hEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHh-hhhhhCCHHHHHHHH
Confidence 12454 8999999999999999999998776444321 222345677888999987765 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+++|++||||| +|||.++..++++|+++ ++.|+|||++|||++. +..+||+|++|++ +..++++
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~---~~~g~tii~~tH~l~~--~~~~~drv~vl~~G~iv~~g~~~ 218 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA---SQEGLTILVSSHNMLE--VEFLCDRIALIHNGTIVETGTVE 218 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEEECCHHH--HTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 99999999999999998 4569999999995555 9999999999988 6667776
Q ss_pred cee
Q 016817 298 GVY 300 (382)
Q Consensus 298 ~v~ 300 (382)
+++
T Consensus 219 el~ 221 (238)
T d1vpla_ 219 ELK 221 (238)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.5e-51 Score=379.28 Aligned_cols=193 Identities=16% Similarity=0.109 Sum_probs=166.0
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
||||+++ +|+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+.+. .| +.||||||++.+||
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~-----------~~-r~ig~v~Q~~~l~~ 83 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP-----------ER-RGIGFVPQDYALFP 83 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT-----------TT-SCCBCCCSSCCCCT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH-----------HH-cCceeeccchhhcc
Confidence 7999996 68999999999999999999999999 89999999998865432 23 48999999999999
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKP 245 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~ 245 (382)
++||+||+.+..... .....++++.++++.+||.+..+ ++|.+|||||||||+|||||+.+|++||||| +|||.+
T Consensus 84 ~ltV~enl~~~l~~~-~~~~~~~~v~~~l~~~gl~~~~~-~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~ 161 (240)
T d2onka1 84 HLSVYRNIAYGLRNV-ERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp TSCHHHHHHTTCTTS-CHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred cchhhHhhhhhhccc-CHHHHHHHHHHHHHhcCcHhhhh-CChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHH
Confidence 999999997643211 11223456888999999997655 9999999999999999999999999999999 999999
Q ss_pred chhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 246 LDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 246 ~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
+..+++.|+++. ++.|+|||+||||++. +.++||++++|++ +..|.++++++
T Consensus 162 ~~~i~~~i~~l~--~~~g~tvi~vtHd~~~--~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 162 KGVLMEELRFVQ--REFDVPILHVTHDLIE--AAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHHH--HHHTCCEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHH--HhcCCeEEEEeCCHHH--HHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 999999999983 5569999999995555 9999999999987 66777777774
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.1e-50 Score=375.95 Aligned_cols=207 Identities=18% Similarity=0.170 Sum_probs=164.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||||+|+++. ++|+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.+.+..
T Consensus 1 mle~knvsf~Y~~~~-----~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~--- 72 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSE-----QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE--- 72 (242)
T ss_dssp CEEEEEEEECSSSSS-----CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCS---
T ss_pred CEEEEEEEEECCCCC-----ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHH---
Confidence 578999999997643 26999999999999999999999999999999999999 899999999988755432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccc-----------ccccccccccCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-----------MKNDAEIDDLKS 213 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~~ 213 (382)
.+|+ +||||||++.+|+ .|+++|+.+.. ......+...++++.++ +...+. ..+.+
T Consensus 73 ------~~r~-~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~g~~ 139 (242)
T d1mv5a_ 73 ------NWRS-QIGFVSQDSAIMA-GTIRENLTYGL----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVK 139 (242)
T ss_dssp ------CCTT-TCCEECCSSCCCC-EEHHHHTTSCT----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBC
T ss_pred ------HHHh-heEEEccccccCC-cchhhheeccc----ccccchhhHHHHHHHHHhhhhhccCccccccccc-CCCCC
Confidence 1454 8999999999998 59999985321 11111222222222222 222222 45667
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+++|+|||||| +||+.++..+++.|+++. +|+|+|+||||++. +. .||+|++|++
T Consensus 140 LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~--~~-~~D~i~vl~~ 212 (242)
T d1mv5a_ 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLST--IV-DADKIYFIEK 212 (242)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHH--HH-HCSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc----CCCEEEEEECCHHH--HH-hCCEEEEEEC
Confidence 99999999999999999999999999 999999999999999983 58999999996554 75 5899999987
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..|++++++
T Consensus 213 G~iv~~G~~~eLl 225 (242)
T d1mv5a_ 213 GQITGSGKHNELV 225 (242)
T ss_dssp TEECCCSCHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 6677777776
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-50 Score=373.30 Aligned_cols=207 Identities=16% Similarity=0.135 Sum_probs=167.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+|+||||+|+.+..+ +|+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 2 I~~~nvsf~Y~~~~~~----vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~----- 72 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP----- 72 (241)
T ss_dssp EEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-----
T ss_pred eEEEEEEEEeCCCCcc----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccch-----
Confidence 6789999999766544 4999999999999999999999999999999999999 89999999998865432
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-----------cccccccccccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-----------LMKNDAEIDDLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~~L 214 (382)
..+|+ +||||||++.+|+ .|+++|+.+.. .....+.+.++++.. ++...+. ..+.+|
T Consensus 73 ----~~lr~-~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~-~~g~~L 140 (241)
T d2pmka1 73 ----NWLRR-QVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGL 140 (241)
T ss_dssp ----HHHHH-HEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCS-TTTTCC
T ss_pred ----hhhhc-eEEEEecccccCC-ccccccccccC-----ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcC-CCCCcc
Confidence 23565 8999999999987 79999995421 111222233332322 2332333 667899
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
||||||||+|||||+++|+|||||| +||+.++..+++.|+++. +|+|+|+|||+++. +. .||+|++|++
T Consensus 141 SGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~--~~-~~D~i~vl~~G 213 (241)
T d2pmka1 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLST--VK-NADRIIVMEKG 213 (241)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGG--GT-TSSEEEEEETT
T ss_pred CHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh----CCCEEEEEECCHHH--HH-hCCEEEEEECC
Confidence 9999999999999999999999999 999999999999999983 58999999996654 64 6899999987
Q ss_pred --cccccccceee
Q 016817 291 --LGVSEISGVYD 301 (382)
Q Consensus 291 --~~~~~~~~v~~ 301 (382)
+..|++++++.
T Consensus 214 ~Iv~~G~~~ell~ 226 (241)
T d2pmka1 214 KIVEQGKHKELLS 226 (241)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 66777777763
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.4e-50 Score=374.57 Aligned_cols=213 Identities=14% Similarity=0.087 Sum_probs=169.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
++.|+++||+|+|++.... .+|+||||+|++||++||+||||||||||+++|+|+++ ++|+|++||+++.+.+
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~--- 82 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDV---LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE--- 82 (251)
T ss_dssp CCCEEEEEEEECCTTSTTC---CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC---
T ss_pred cceEEEEEEEEECCCCCCC---EeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhh---
Confidence 4579999999999764322 26999999999999999999999999999999999999 8999999999875332
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcccccc---------ccccCccc--ccccccccccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQR---------CLRSDDCA--LMKNDAEIDDL 211 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~---------~~~~l~~~--~L~~~~~~~~~ 211 (382)
...+|+ +++||||++.+|+ .|+++|+.+... ....... ..+.++.+ ++...+. +.+
T Consensus 83 ------~~~~r~-~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~-~~~ 149 (251)
T d1jj7a_ 83 ------HRYLHR-QVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD-EAG 149 (251)
T ss_dssp ------HHHHHH-HEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCC-SSC
T ss_pred ------hHHHHH-HhhhccccccccC-cchhhhhhhhhc----ccchHHHHHHHHHHHHHHHHHHhccccchhhHh-ccC
Confidence 123554 8999999999997 799999964311 1111111 11122222 4554444 788
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+++|+|||||| +||+.++..+++.|+++. ++.|+|+|+||||++. +. .||+|++|
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~--~~~~~Tvi~itH~l~~--~~-~aDrI~vl 224 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESP--ERYSRSVLLITQHLSL--VE-QADHILFL 224 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCG--GGGGCEEEEECSCHHH--HH-TCSEEEEE
T ss_pred ccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHh--hhcCCEEEEEeCCHHH--HH-hCCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 4568999999996554 65 58999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..|++++++
T Consensus 225 ~~G~iv~~Gt~~eLl 239 (251)
T d1jj7a_ 225 EGGAIREGGTHQQLM 239 (251)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 87 6667777766
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.8e-49 Score=369.59 Aligned_cols=211 Identities=17% Similarity=0.163 Sum_probs=170.7
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..+.|+++||+|+|+.+..+ +|+||||+|++||++||+||||||||||+++|+|+++ ++|+|+++|+++.+.+.
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~----~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~- 84 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVP----ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL- 84 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCC----SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH-
T ss_pred CceEEEEEEEEEEeCCCCCc----eeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhh-
Confidence 44579999999999865533 6999999999999999999999999999999999999 89999999998764432
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-----------cccccccccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-----------LMKNDAEIDD 210 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~ 210 (382)
..+|+ .++|++|++.+|+ .|+.+|+.+.. ......+++.++++.+ |++..+. ++
T Consensus 85 --------~~~r~-~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~-~~ 149 (253)
T d3b60a1 85 --------ASLRN-QVALVSQNVHLFN-DTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG-EN 149 (253)
T ss_dssp --------HHHHH-TEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCC-TT
T ss_pred --------hhhhh-eEEEEeeccccCC-cchhhhhhhcC----cccCCHHHHHHHHHHHhHHHHHHhccccchhhhc-CC
Confidence 23565 8999999999997 78999985431 1112233344443333 3333343 66
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+++|+|||||| +||+.++..|++.|+++. +++|+|+||||++. +. .||+|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~--~~-~~D~v~v 222 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLST--IE-QADEIVV 222 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH----TTSEEEEECSCGGG--TT-TCSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHH--HH-hCCEEEE
Confidence 78899999999999999999999999999 999999999999999983 48999999996654 65 6899999
Q ss_pred hhh---ccccccccee
Q 016817 288 CEY---LGVSEISGVY 300 (382)
Q Consensus 288 l~~---~~~~~~~~v~ 300 (382)
|++ +..|++++++
T Consensus 223 l~~G~Iv~~G~~~eLl 238 (253)
T d3b60a1 223 VEDGIIVERGTHSELL 238 (253)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 987 6677777776
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.1e-49 Score=372.67 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=172.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..+.|+++||+|+|+++..+ +|+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.+.+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~----vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~-- 86 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAP----ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-- 86 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC--
T ss_pred CCCEEEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCC--
Confidence 45679999999999876543 6999999999999999999999999999999999999 8999999999875332
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc----------cccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDL 211 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~ 211 (382)
...+|+ .|+||+|++.+|+ .||++|+.+. .....++++.++++.+++.+++. ...+
T Consensus 87 -------~~~lr~-~i~~v~Q~~~lf~-~Ti~eNi~~g-----~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g 152 (255)
T d2hyda1 87 -------TGSLRN-QIGLVQQDNILFS-DTVKENILLG-----RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 152 (255)
T ss_dssp -------HHHHHH-TEEEECSSCCCCS-SBHHHHHGGG-----CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred -------HHHhhh-eeeeeeccccCCC-CCHHHHHhcc-----CcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCC
Confidence 223665 8999999999997 7999999532 22333445556666655543221 1455
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+++|+|||||| +||+.++..+++.|+++. +++|+|+|||+++. +. .||+|++|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~----~~~TvI~itH~~~~--~~-~~D~ii~l 225 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLST--IT-HADKIVVI 225 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGG--TT-TCSEEEEE
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHH--HH-hCCEEEEE
Confidence 6799999999999999999999999999 999999999999999873 47899999996654 65 68999999
Q ss_pred hh---cccccccceee
Q 016817 289 EY---LGVSEISGVYD 301 (382)
Q Consensus 289 ~~---~~~~~~~~v~~ 301 (382)
++ +..|++++++.
T Consensus 226 ~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 226 ENGHIVETGTHRELIA 241 (255)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 87 56777777663
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.4e-47 Score=351.79 Aligned_cols=215 Identities=17% Similarity=0.105 Sum_probs=175.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
+++++||+++| +|++|||+|++||++||+||||||||||+++|+|+.+++|+|.++|+++...+
T Consensus 3 il~~~dv~~~~----------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~------ 66 (231)
T d1l7vc_ 3 VMQLQDVAEST----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWS------ 66 (231)
T ss_dssp EEEEEEECCTT----------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSC------
T ss_pred EEEEECcccCc----------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCC------
Confidence 46788887766 49999999999999999999999999999999998778999999999764322
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..+ ++ ...+|++|+.......++++++.... ......+.+.++++.+++.+.+. +++.+|||||||||+||
T Consensus 67 ~~~---~~-~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~-~~~~~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 67 ATK---LA-LHRAYLSQQQTPPFATPVWHYLTLHQ----HDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLA 137 (231)
T ss_dssp HHH---HH-HHEEEECSCCCCCSSCBHHHHHHHHC----SCTTCHHHHHHHHHHTTCTTTTT-SBGGGCCHHHHHHHHHH
T ss_pred HHH---HH-hhceeeeccccCCccccHHHHhhhcc----chhhHHHHHHHHHHhcCCHhHhC-cChhhcCHHHHHHHHHH
Confidence 111 22 26789999866544467777774321 22233455677888899987765 99999999999999999
Q ss_pred eeehh-------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 226 MVVSN-------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 226 raL~~-------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
|||++ +|+|||||| +||+.++..+.++|+++ ++.|+|||+||||++. +.++||++++|++ +.
T Consensus 138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l---~~~g~tii~vtHdl~~--~~~~~dri~vl~~G~iv~ 212 (231)
T d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL---CQQGLAIVMSSHDLNH--TLRHAHRAWLLKGGKMLA 212 (231)
T ss_dssp HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHH---HHTTCEEEECCCCHHH--HHHHCSBCCBEETTEECC
T ss_pred HHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHHCCEEEEEECCEEEE
Confidence 99997 678999999 99999999999999998 4569999999996655 9999999999987 77
Q ss_pred cccccceeeEEEecc-ccC
Q 016817 293 VSEISGVYDIVCLTE-YGF 310 (382)
Q Consensus 293 ~~~~~~v~~~~~l~~-~~~ 310 (382)
.++++++++.+.+.+ ||+
T Consensus 213 ~G~~~ev~~~~~l~~~ygi 231 (231)
T d1l7vc_ 213 SGRREEVLTPPNLAQAYGM 231 (231)
T ss_dssp CSBHHHHSCHHHHHHHHCC
T ss_pred ECCHHHHhCChHHHHhhCc
Confidence 888899998776655 653
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-42 Score=330.96 Aligned_cols=193 Identities=15% Similarity=0.066 Sum_probs=145.3
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
....|+++|+++.+ .+ +|+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|
T Consensus 35 ~~~~i~~~~~~~~g----~p----vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--------- 97 (281)
T d1r0wa_ 35 DENNVSFSHLCLVG----NP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--------- 97 (281)
T ss_dssp -----CHHHHHHTT----CE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---------
T ss_pred CCCcEEEEEcCCCC----Ce----EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---------
Confidence 34567788877643 22 5999999999999999999999999999999999999 899999887
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-----------cccccccccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-----------LMKNDAEIDD 210 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~ 210 (382)
+++|++|++.+|+ .|+++|+.+... ........+++.+ +....+. +.
T Consensus 98 --------------~i~~v~Q~~~l~~-~tv~eni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~~ 155 (281)
T d1r0wa_ 98 --------------RVSFCSQFSWIMP-GTIKENIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLG-EG 155 (281)
T ss_dssp --------------CEEEECSSCCCCS-EEHHHHHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC-TT
T ss_pred --------------EEEEEeccccccC-ceeecccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhh-hh
Confidence 4789999999998 699999954311 0111111111111 1111222 56
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+++|+|||||| +||+.++..+++.+... ...++|+|+|||+++ .+ +.||+|++
T Consensus 156 ~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~---~~~~~tvi~itH~~~--~l-~~aDrI~v 229 (281)
T d1r0wa_ 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK---LMANKTRILVTSKME--HL-RKADKILI 229 (281)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCC---CTTTSEEEEECSCHH--HH-HTCSEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHH---hhCCCEEEEEechHH--HH-HhCCEEEE
Confidence 67899999999999999999999999999 99999999998764443 235899999999553 35 57899999
Q ss_pred hhh---ccccccccee
Q 016817 288 CEY---LGVSEISGVY 300 (382)
Q Consensus 288 l~~---~~~~~~~~v~ 300 (382)
|++ +..|++.+++
T Consensus 230 l~~G~i~~~Gt~~eL~ 245 (281)
T d1r0wa_ 230 LHQGSSYFYGTFSELQ 245 (281)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHh
Confidence 987 5667766665
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.2e-43 Score=317.62 Aligned_cols=192 Identities=16% Similarity=0.089 Sum_probs=155.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+++|||++|+ . + +|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 2 ~lev~~ls~~y~--~-~----vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~------- 67 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK------- 67 (200)
T ss_dssp EEEEEEEEEESS--S-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-------
T ss_pred eEEEEEEEEEeC--C-e----EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-------
Confidence 478899999994 2 2 5999999999999999999999999999999999999 89999999986531
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
++. +++|++|+..++..+|+.+++......++. ...++++.++++.+++.+ +. +++.+|||||||||+|
T Consensus 68 -------~~~-~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~-~~~~~LSgG~~qrv~i 136 (200)
T d1sgwa_ 68 -------VKG-KIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVLD-LK-KKLGELSQGTIRRVQL 136 (200)
T ss_dssp -------GGG-GEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCC-TT-SBGGGSCHHHHHHHHH
T ss_pred -------hcC-cEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCHHHHHHHHHHcCCcc-cc-cccCcCCCcHHHHHHH
Confidence 233 799999999888889999999776543322 223345566777777754 34 6789999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+++.|.++. ++.+.+||+++| ++ .+||++..++.
T Consensus 137 a~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~--~~~~~~ii~~~~--~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL--KEKGIVIISSRE--EL----SYCDVNENLHK 197 (200)
T ss_dssp HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--HHHSEEEEEESS--CC----TTSSEEEEGGG
T ss_pred HHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHH--hCCCEEEEEEec--hh----hhcchhhheee
Confidence 999999999999999 999999999999999984 444555555545 33 36888777754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=6.3e-18 Score=146.41 Aligned_cols=150 Identities=9% Similarity=-0.013 Sum_probs=96.2
Q ss_pred eeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL 179 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~ 179 (382)
++|+||||||||||+++|+|.++ +.|.+.+.+.+..... ++.++..+...........
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~------ 61 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK---------------KRTGFRIITTEGKKKIFSS------ 61 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC---------------------CCEEEEEETTCCEEEEEE------
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHH---------------HhhhhhhhhhhHHHHHHhh------
Confidence 78999999999999999999999 8999999887432111 1334433321100000000
Q ss_pred HhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-cCCCCcchhhhhhccCccc
Q 016817 180 SSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-AGDSKPLDATKRLFSAPGL 258 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-~LD~~~~~~i~~~l~~l~~ 258 (382)
..... .......+. +....++|+|+++|.++++++..+|++|++|| +.+......+.+.+.++.
T Consensus 62 -----~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l- 126 (178)
T d1ye8a1 62 -----KFFTS----KKLVGSYGV-----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM- 126 (178)
T ss_dssp -----TTCCC----SSEETTEEE-----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH-
T ss_pred -----hhhhh----hhhhhhhhc-----CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHh-
Confidence 00000 000111122 13445689999999999999999999999999 655555566666666653
Q ss_pred cccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 259 RKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 259 ~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++.+.|+|+++|+... ...++++..+.+
T Consensus 127 -~~~~~~il~~~h~~~~---~~~~~~i~~~~~ 154 (178)
T d1ye8a1 127 -HDPNVNVVATIPIRDV---HPLVKEIRRLPG 154 (178)
T ss_dssp -TCTTSEEEEECCSSCC---SHHHHHHHTCTT
T ss_pred -ccCCCEEEEEEccHHH---HHhhceEEEEeC
Confidence 4457899999996544 446777777655
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.72 E-value=8.7e-08 Score=91.80 Aligned_cols=70 Identities=7% Similarity=0.056 Sum_probs=53.4
Q ss_pred cCCCccceeeecceeeee----hhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVV----SNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDA 283 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL----~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d 283 (382)
...||||||.++++|-.+ ..++++++||| +||+.++..+.+.|.++ ...+.-+|+|||++.+ +.. +|
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~---~~~~~Q~I~iTH~~~~--~~~-ad 403 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH---RNPDLQFIVISLKNTM--FEK-SD 403 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH---CBTTBEEEEECSCHHH--HTT-CS
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---hCCCCEEEEEeCCHHH--HHh-cc
Confidence 356899999998877544 34567999999 99999999999999887 2344569999997765 444 45
Q ss_pred hhh
Q 016817 284 RLK 286 (382)
Q Consensus 284 ~v~ 286 (382)
+++
T Consensus 404 ~~~ 406 (427)
T d1w1wa_ 404 ALV 406 (427)
T ss_dssp EEE
T ss_pred cEE
Confidence 443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=9.9e-06 Score=67.12 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=25.7
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccc-eeeeE
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSG-LVLFA 131 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G-~I~i~ 131 (382)
+++|+|++|||||||++.|...+...| ++.+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~ 36 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 789999999999999999998877333 34443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=9.6e-07 Score=74.72 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=29.6
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++.+|++.+| +++|+|||||||||++.+|.-++.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 66677788776 899999999999999999986553
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=1.1e-05 Score=68.75 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.7
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987665
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=1.6e-05 Score=66.09 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=28.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
.+.|.||+|+|||||++.++..+. ..+.+.+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~ 37 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 478999999999999999999998 6666655554
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.51 E-value=1e-05 Score=72.21 Aligned_cols=33 Identities=36% Similarity=0.368 Sum_probs=25.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
+|++++++|+||+|||||+|.|.|-.. ..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 589999999999999999999998766 677775
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.43 E-value=2.3e-05 Score=65.19 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.3
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.|+++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998643
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.42 E-value=3.3e-05 Score=64.58 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.5
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+++|+|++|||||||++-|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999998888776
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=3.4e-05 Score=63.95 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=25.0
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.+.++.|+||+||||||+.+.|+.-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998763
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.37 E-value=3.8e-05 Score=63.65 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=25.7
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+|-++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999998775
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.34 E-value=3.4e-05 Score=70.48 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=54.5
Q ss_pred ccCCCccceeeecceeeee----hhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVV----SNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL----~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
....+|+|||+...++..+ ...|.+++.|| +|+|..+..+.+.|++.. .+.-+|++||.+.+ +..+
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~----~~~QviitTHsp~~--~~~~- 288 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS----KHTQFIVITHNKIV--MEAA- 288 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT----TTSEEEEECCCTTG--GGGC-
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHH--HHhc-
Confidence 4567999999988776543 34567899999 999999999999999873 45789999998777 5443
Q ss_pred hhhh
Q 016817 283 ARLK 286 (382)
Q Consensus 283 d~v~ 286 (382)
|+++
T Consensus 289 d~~~ 292 (308)
T d1e69a_ 289 DLLH 292 (308)
T ss_dssp SEEE
T ss_pred ccEE
Confidence 4443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.32 E-value=1.1e-05 Score=72.21 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=22.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
+|.+++++|+||+|||||+|.|.|-.. ..|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 578889999999999999999999776 678876
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.23 E-value=4.5e-05 Score=63.32 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=22.1
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..++|+||+|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999997653
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.21 E-value=6.2e-05 Score=62.20 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=23.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..++.|.||+||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998765
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.20 E-value=7.7e-05 Score=62.06 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=25.7
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
.+++|.|++||||||+++.|+-.+. ....+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~ 33 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 5899999999999999999998776 444443
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.18 E-value=7e-05 Score=63.21 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.7
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
=++||-||+|||||||.+.|.-.+.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3799999999999999999998776
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.17 E-value=6.9e-05 Score=62.09 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=23.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++|-.++|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 567789999999999999999998654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=6.8e-05 Score=65.62 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998876654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.13 E-value=8.9e-05 Score=60.27 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=23.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhcccceeeeEe
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G 132 (382)
+++.|.||+|||||||.+.|..- ..|.+.++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~--~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK--NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh--CCCCEEech
Confidence 47889999999999999976431 334444443
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.13 E-value=9.1e-05 Score=60.79 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=25.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhcccceeeeEe
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G 132 (382)
.++.|.||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~--~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CCEEEeh
Confidence 4788999999999999999987653 3344444
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.11 E-value=7.1e-05 Score=63.95 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||+|.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=8e-05 Score=60.38 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999997653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.03 E-value=7.8e-05 Score=70.51 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCceeeeeeecccCCCchhHHHHHH
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
+..+.+++|+|||||||||++.+|.
T Consensus 22 f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 22 FGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445589999999999999999995
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=7.9e-05 Score=62.93 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+|-++.|+|++||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998765
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.01 E-value=0.00011 Score=60.57 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.6
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.|+||+||||||+.+.|+--+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.92 E-value=0.00019 Score=59.81 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.9
Q ss_pred eeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
.++.|.|++||||||+.+.|+..+...|
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~~~ 29 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDNQG 29 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4678899999999999999999887434
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.87 E-value=0.00029 Score=61.49 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.3
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++|+||.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999987554
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00017 Score=61.49 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=20.0
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|+||||||||||++.|+.-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876544
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.83 E-value=0.00023 Score=60.56 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+..++.|+||.||||||+.+.|+--+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00023 Score=61.61 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.7
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++||-||+|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.82 E-value=0.00019 Score=60.12 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||+|.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.00022 Score=60.68 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.8
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999887644
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.00031 Score=59.89 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.7
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++-.++.|+||.||||||+.+.|+.-+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999998765
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=0.00023 Score=59.24 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.72 E-value=0.00028 Score=60.39 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=19.9
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++|+||||||||||++.|.-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.0003 Score=60.03 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|||||||++.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00028 Score=58.78 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+++|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.66 E-value=0.00032 Score=56.65 Aligned_cols=22 Identities=23% Similarity=0.661 Sum_probs=19.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999999873
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.65 E-value=0.00031 Score=58.96 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+++|+|.+|+|||||++.|.|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999975
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.63 E-value=0.00034 Score=56.94 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999998764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.63 E-value=0.00037 Score=56.37 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.5
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.|+|++|||||||++.+.+-.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999988643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.62 E-value=0.00016 Score=61.05 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.2
Q ss_pred eeeecccCCCchhHHHHHHHh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl 121 (382)
+||+|++++|||||+|.|.|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999998764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00041 Score=56.72 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.1
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
=.++|+|+.|+|||||++.|.|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999753
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.55 E-value=0.00037 Score=58.20 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999998654
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.55 E-value=0.00044 Score=57.43 Aligned_cols=22 Identities=45% Similarity=0.754 Sum_probs=20.0
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.52 E-value=0.00055 Score=57.45 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.0
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+=.+||+|+.|+|||||++.|.|-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 335899999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.50 E-value=0.00049 Score=58.26 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=22.8
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
|+|=.+.|+||.||||||+.+.|+--+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 456678899999999999999999443
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.50 E-value=0.00037 Score=57.72 Aligned_cols=22 Identities=18% Similarity=0.622 Sum_probs=19.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|||++|||||||++.+.+-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5779999999999999998763
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.49 E-value=0.00027 Score=59.33 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.7
Q ss_pred eeeecccCCCchhHHHHHHHh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl 121 (382)
+||+|++|+|||||+|.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.49 E-value=0.00069 Score=59.89 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+.|.||+|||||||.+.|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3488999999999999999998764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.47 E-value=0.00045 Score=58.53 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998655
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.46 E-value=0.00033 Score=59.79 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++.++.|+||.||||||+.+.|+--+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.43 E-value=0.00049 Score=60.00 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=32.7
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-c--cceeeeEeecCC
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R--SGLVLFAQTSSG 136 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~--~G~I~i~G~~i~ 136 (382)
=++|-++-|.|.+|||||||.+.|.--+. . .-.+.+||..++
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 36788999999999999999999986554 3 235678886543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.00055 Score=57.97 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.7
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.00055 Score=56.81 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.1
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|+|++||||||+.+.|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999997653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.40 E-value=0.00031 Score=57.50 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.4
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++|+|++|+|||||+|.|.|-.
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.40 E-value=0.00066 Score=57.69 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.9
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++.++|.+|||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.40 E-value=0.00043 Score=59.78 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=24.3
Q ss_pred eeeeecccCCCchhHHHHHHHhhc----ccceee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS----RSGLVL 129 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~ 129 (382)
+++|-||+||||||+.+.|+--+. ++|.++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~ 38 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 38 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence 578889999999999999998764 356553
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.00043 Score=58.12 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=25.3
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++|+++.|.||+|||||||+.-++.-..
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988876543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.36 E-value=0.00071 Score=57.03 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=27.5
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
+.-++-+++.++|++||||||+.+-++ ...|.+.++.-
T Consensus 9 ~~~~~p~liil~G~pGsGKST~a~~l~---~~~~~~~i~~D 46 (172)
T d1yj5a2 9 LLSPNPEVVVAVGFPGAGKSTFIQEHL---VSAGYVHVNRD 46 (172)
T ss_dssp SSCSSCCEEEEECCTTSSHHHHHHHHT---GGGTCEEEEHH
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHH---HhcCCEEEchH
Confidence 344667899999999999999998664 23455555543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.34 E-value=0.00067 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.7
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997655
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.30 E-value=0.00066 Score=57.47 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.0
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998853
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.27 E-value=0.0011 Score=57.93 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=27.3
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
++.+++++||+|+||||.+-=|+..+. ..-+|.+-..|
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~D 43 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 43 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 567999999999999988776776665 43445444333
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.00081 Score=57.61 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=25.3
Q ss_pred eeeeecccCCCchhHHHHHHHhhc----ccceee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS----RSGLVL 129 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~ 129 (382)
+++|.||.||||||+.+.|+--+. ++|.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence 899999999999999999997664 357663
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.22 E-value=0.00048 Score=64.28 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=23.7
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSR 124 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~ 124 (382)
|.-+.|.||.|||||||++.|.+.+++
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEeeccccchHHHHHHhhhccc
Confidence 345789999999999999999998873
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0011 Score=61.85 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=27.7
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc-eeee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG-LVLF 130 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G-~I~i 130 (382)
.+.-++||.||.|||||||++.+...+...| +|-+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav 87 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 87 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceee
Confidence 3456899999999999999999998877333 4443
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.00092 Score=57.56 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=26.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
+|.+++|-|+-||||||+++.|...+...|
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g 30 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 30 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 588999999999999999999998776444
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.19 E-value=0.0008 Score=60.44 Aligned_cols=23 Identities=52% Similarity=0.609 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|.+|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999854
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.00033 Score=58.21 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.6
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|++++|||||+|.|.|-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.16 E-value=0.00094 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999765
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.001 Score=57.76 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=26.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
++|-+++|-|+-||||||+++.|..-+...|
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g 31 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAG 31 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 4688999999999999999999998776334
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.15 E-value=0.0007 Score=55.66 Aligned_cols=22 Identities=18% Similarity=0.570 Sum_probs=19.4
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|||||||++.+.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999998764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.14 E-value=0.002 Score=56.35 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=28.9
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
++.=.+..+++++||+|+||||.+-=|+-.+. ..-+|.+-..|.
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt 49 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 49 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc
Confidence 33334567899999999999987655565445 444555544443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0019 Score=56.55 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=28.5
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
++=++-.+++++||+|+||||.+-=|+-.+. ..-+|.+-..|
T Consensus 4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D 46 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 46 (211)
T ss_dssp CCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc
Confidence 3333346899999999999987766676665 43455554443
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0012 Score=61.23 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=23.3
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
=++||.|++||||||+.+.|..++.
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence 4899999999999999999999886
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.07 E-value=0.001 Score=60.91 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++||.|+|||||||+.+.|.-++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999998887
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.03 E-value=0.001 Score=56.37 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.1
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.-+++|-|+.||||||+++.|...+
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 345589999999999999999998654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0012 Score=55.23 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999998654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.03 E-value=0.0016 Score=56.60 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=26.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccce
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGL 127 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~ 127 (382)
+|.+++|=|+-||||||+++.|+-.+...|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTTSEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHhCCE
Confidence 6999999999999999999999876654444
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.00 E-value=0.0011 Score=54.75 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.97 E-value=0.0013 Score=56.15 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999873
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.95 E-value=0.0014 Score=54.01 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.6
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 367999999999999998865
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.00076 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998764
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.94 E-value=4e-05 Score=69.97 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+++.++ +.+|+|||||||||+|.+|.-+
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~ 47 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred EeCCCC-eEEEECCCCCcHHHHHHHHHHH
Confidence 334444 8899999999999999999654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.93 E-value=0.0014 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.88 E-value=0.0014 Score=56.46 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=18.4
Q ss_pred eeeeecccCCCchhHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~ 119 (382)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998775
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.87 E-value=0.0013 Score=55.18 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-+||+|+..||||||+|.|.|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 3999999999999999999874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.81 E-value=0.0028 Score=55.20 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=26.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
...++.++||+|+||||.+--|+..+. ..-+|.+-..|
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~D 47 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 47 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc
Confidence 356889999999999988877777666 43344443333
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.80 E-value=0.0012 Score=58.28 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++++.|.|||.+||||+||.++=..
T Consensus 35 ~~~~iiTGpN~~GKSt~lk~i~l~~ 59 (224)
T d1ewqa2 35 HELVLITGPNMAGKSTFLRQTALIA 59 (224)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCccccchhhhhhHHHH
Confidence 3588999999999999999987543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0018 Score=53.65 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=18.4
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|++|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0018 Score=57.41 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=25.4
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
=+|++++= .+.++.|.|||.|||||+||.++=..
T Consensus 32 pNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 32 ANPLNLSP-QRRMLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp CEEEEECS-SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECC-CceEEEEeccCchhhHHHHHHHHHHH
Confidence 34455542 34678899999999999999996543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.72 E-value=0.002 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.7
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|.||+|+||||++++|+..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999998653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.70 E-value=0.002 Score=53.34 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=18.8
Q ss_pred eeeecccCCCchhHHHHHHHh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl 121 (382)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.69 E-value=0.0016 Score=62.33 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=22.9
Q ss_pred eeeecccCCCchhHHHHHHHhhc-ccce
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~-~~G~ 127 (382)
+||+|.+|+|||||+|.|.|.-. ..|.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCcc
Confidence 89999999999999999999654 3443
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.69 E-value=0.0026 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.8
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+.|.||+|+||||++++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.002 Score=53.05 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.6
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|++|+|||||++.+.+
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.66 E-value=0.0031 Score=55.07 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=23.8
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+...+++++||+|+||||.+-=|+-.+. ...+|.+-..|
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D 49 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGAD 49 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEee
Confidence 3456899999999999988766666555 44456554444
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.66 E-value=0.0024 Score=55.66 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.2
Q ss_pred eeeecccCCCchhHHHHHHHhhc-cc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS-RS 125 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~-~~ 125 (382)
+.+.||.|+||||+.++|+..+. ..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCc
Confidence 67999999999999999998776 43
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.0021 Score=53.83 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.6
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.|+||.||||||+.+.|+--+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0027 Score=56.96 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=24.4
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++++..+.++| +.+.||+|||||+|++.|+..+.
T Consensus 37 ~~~~g~~~~~~--iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEeeCCCCCCccHHHHHHHHHcC
Confidence 45555555655 67999999999999999998764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.60 E-value=0.0023 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.59 E-value=0.0023 Score=58.82 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=25.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
+++ -+.++||+|+|||+|.|+|+.... .--+.+++.
T Consensus 48 ~~~-~iLl~GPpG~GKT~lAkalA~~~~-~~~~~i~~s 83 (309)
T d1ofha_ 48 TPK-NILMIGPTGVGKTEIARRLAKLAN-APFIKVEAT 83 (309)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHHT-CCEEEEEGG
T ss_pred CCc-eEEEECCCCCCHHHHHHHHhhccc-cchhccccc
Confidence 444 456999999999999999998764 113445543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.0024 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.6
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|.||+|+|||||+++++..+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHc
Confidence 67999999999999999998653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.56 E-value=0.0022 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.0
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.++.|.||.|+|||||++.++.-.
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 4578899999999999999876543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0024 Score=53.13 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=18.3
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.49 E-value=0.0028 Score=53.87 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.3
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
+++|-|+-||||||+++.|...+...|
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~~g 28 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 578999999999999999998776444
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.49 E-value=0.0026 Score=52.18 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.8
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0027 Score=54.72 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.0
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
++||+|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999998753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.46 E-value=0.0016 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.2
Q ss_pred CCceeeeeeecccCCCchhHHHHHHH
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+++|+++-|.||+|||||||..-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999999877653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.45 E-value=0.0017 Score=53.72 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=18.8
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998854
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0029 Score=54.82 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=+++|.++.|.||+|||||||...++..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999998887753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.003 Score=51.89 Aligned_cols=20 Identities=50% Similarity=0.644 Sum_probs=18.3
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++++|++|+|||||++.+.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998775
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.34 E-value=0.0032 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.9
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.+.||.|+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0042 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
-.++|+|+.|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3588999999999999998765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.0033 Score=51.90 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.6
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|+.|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.0033 Score=51.89 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.8
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998765
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.0033 Score=52.05 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=17.9
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|++|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 67999999999999998764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.21 E-value=0.0054 Score=53.41 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.8
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999887
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.21 E-value=0.0036 Score=52.31 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=18.2
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0033 Score=51.80 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.4
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999997765
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.20 E-value=0.0045 Score=55.13 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=24.7
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.....++| +.+.||.|+|||||++.|+....
T Consensus 37 ~g~~~~~g--iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 37 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCce--EEEecCCCCChhHHHHHHHHHcC
Confidence 33445555 67999999999999999998654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.0037 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0032 Score=52.70 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.2
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|+.|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.15 E-value=0.0027 Score=56.63 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=28.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.|+++..=+.+|+++.|.|++|+|||||+.-++--
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 36665545789999999999999999998888753
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.15 E-value=0.0031 Score=54.77 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCceeeeeeecccCCCchhHHHHHH
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
+++|+++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999999977554
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.13 E-value=0.0041 Score=54.32 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++||+|..+||||||++.|.+-.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 59999999999999999998764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.12 E-value=0.0065 Score=50.52 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=26.7
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..++|.+++|-|+=|||||||.|.++.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 456899999999999999999999997664
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0036 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=19.2
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++|+|+.|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999987753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.11 E-value=0.0054 Score=58.45 Aligned_cols=31 Identities=32% Similarity=0.323 Sum_probs=25.3
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccce
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~ 127 (382)
++..+.|.||.||||||++..+...+. +..+
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence 345788999999999999999998776 4344
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.004 Score=50.83 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=18.4
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|..|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.10 E-value=0.0041 Score=57.68 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=23.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.-++||.||-|||||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 356799999999999999999987654
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.09 E-value=0.0032 Score=54.02 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|+++.|.|++|+|||||.--++--.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988776443
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.07 E-value=0.0042 Score=50.68 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=18.2
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 77999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0047 Score=51.09 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=18.0
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.02 E-value=0.0047 Score=53.58 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=27.3
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
+++|.++.|.||+|||||||+.-++--.. ..+.+.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~ 58 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAI 58 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccc
Confidence 77899999999999999999877765543 333343
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.02 E-value=0.0057 Score=54.88 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
....++| +.|.||+|+|||+|++.+++.+.
T Consensus 37 g~~~~~g--iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKG--VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCE--EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCe--EEEECCCCCcchhHHHHHHHHhC
Confidence 3444445 77999999999999999999764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0045 Score=50.79 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred eeeecccCCCchhHHHHHHHh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl 121 (382)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887753
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0044 Score=51.40 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=18.3
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.+.|+|++|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367999999999999988765
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.00 E-value=0.0032 Score=53.83 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCceeeeeeecccCCCchhHHHHHH-Hhhc-ccceeeeEe
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMY-SVLS-RSGLVLFAQ 132 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~-Gl~~-~~G~I~i~G 132 (382)
+++|+++.|.|++|+|||||+.-++ .... ....+.+..
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s 62 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 62 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccc
Confidence 7899999999999999999985443 3222 344555543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.99 E-value=0.0045 Score=59.90 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=28.2
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
++.+- =+.+|||+|||||-|.|.|++++. + -+..+..
T Consensus 46 ei~ks-NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT 83 (443)
T d1g41a_ 46 EVTPK-NILMIGPTGVGKTEIARRLAKLANAP--FIKVEAT 83 (443)
T ss_dssp TCCCC-CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGG
T ss_pred ccccc-cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecc
Confidence 45544 367999999999999999999987 6 3444444
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.0048 Score=50.69 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.3
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.94 E-value=0.0035 Score=52.25 Aligned_cols=21 Identities=29% Similarity=0.760 Sum_probs=18.2
Q ss_pred eeeeeecccCCCchhHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~ 119 (382)
=.++++|++|+|||||++.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 357799999999999999774
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.0055 Score=54.66 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=26.8
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++...+..++| +.|.||.|+|||+|++.++....
T Consensus 30 ~~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 30 FKAIGVKPPRG--ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp HHHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCCCCCce--eEEecCCCCCchHHHHHHHHHhC
Confidence 44445566677 67999999999999999998653
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.0055 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
=++||-|+.|||||||.+.|.-.+.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L~ 52 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHLM 52 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999998865543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0052 Score=51.03 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=18.6
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.0051 Score=52.01 Aligned_cols=20 Identities=45% Similarity=0.625 Sum_probs=18.4
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998875
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.0054 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.3
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|.||+|+||||++++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 66999999999999999997653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0053 Score=50.39 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.1
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.76 E-value=0.0069 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+.|.||.|||||+|.+.|+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 467999999999999999998654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0058 Score=50.43 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=18.3
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0058 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.4
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.0069 Score=55.23 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=28.6
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|.+|+..+|+|++|+|||||+..|+.-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999998766
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0061 Score=50.19 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.2
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.0052 Score=50.88 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=19.5
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.|+|..|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7799999999999999988643
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.0065 Score=49.91 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=18.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999977653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.0067 Score=49.89 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=18.6
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998874
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.51 E-value=0.0072 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.5
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.+.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367999999999999998775
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0056 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+=-+++|+||-++|||||+|.|.|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 34589999999999999999999864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.49 E-value=0.0041 Score=51.41 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=18.2
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.+.++|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999998763
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.0076 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.0
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+-|.||.|+||||++++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 5699999999999999999864
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.0079 Score=49.44 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=18.0
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999997654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.38 E-value=0.0084 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.-++.|.||.|+||||+++.++..+.
T Consensus 46 ~~~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 46 NMIYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHH
Confidence 33567789999999999999998875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0061 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.7
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|.||.|+||||+++.++.-+.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 67999999999999999998654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.36 E-value=0.0052 Score=50.82 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=8.5
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.30 E-value=0.0089 Score=50.59 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=24.0
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHH
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
++..-+.+. |.-+.|.||||+|||||...+.
T Consensus 6 ~H~~~v~~~-g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEVF-GVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEET-TEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHH
Confidence 555556664 6678899999999999986654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.29 E-value=0.0085 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.5
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 477999999999999998764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.28 E-value=0.0087 Score=50.62 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=23.0
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHH
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
|+..-+.+. |.-+.|.|+||+|||||.-.+.
T Consensus 5 lH~~~v~~~-g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 5 MHGVLVDIY-GLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEET-TEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence 454455554 6668899999999999886544
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.011 Score=49.07 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.8
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|.+|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999988765
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.0093 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.7
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++++|+.|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999997765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.0094 Score=49.85 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=17.8
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999987653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.0094 Score=53.55 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.4
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccce-eeeEee
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL-VLFAQT 133 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~-I~i~G~ 133 (382)
++.|.++-|.||+|||||||+-.++.... ..|. +++|.+
T Consensus 51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 56789999999999999999888887766 5555 555655
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.0097 Score=48.69 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.0
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++|+|.+|+|||||++-+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.008 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=17.4
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++++|++|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999986643
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.03 E-value=0.0091 Score=49.87 Aligned_cols=20 Identities=45% Similarity=0.667 Sum_probs=17.9
Q ss_pred eeeeecccCCCchhHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~ 119 (382)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999999984
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.00 E-value=0.011 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.011 Score=49.67 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.1
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|++|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987664
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.91 E-value=0.011 Score=49.21 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=17.3
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
+.++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.86 E-value=0.016 Score=52.18 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=31.8
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccce-eeeEee
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL-VLFAQT 133 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~-I~i~G~ 133 (382)
-++.|.++-|.||+|||||||+-.++.... ..|. |+||.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 478899999999999999999877776655 5666 555665
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.82 E-value=0.011 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=22.4
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+.|+||.|+|||||+|.++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999999986
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.016 Score=54.64 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=25.1
Q ss_pred eeeeeecccCCCchhHHHH-HHHhhc-ccceeeeEee
Q 016817 99 ITILLMGFSGSGKSSLVNL-MYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~-i~Gl~~-~~G~I~i~G~ 133 (382)
..+.|+|++|||||++++. |..++. ..+-|.+|.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k 87 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 87 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4589999999999999864 445555 4455555654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.69 E-value=0.011 Score=53.23 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=25.2
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccce
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~ 127 (382)
+.++ .++++|.-.||||||+|.|.|.-- ++|.
T Consensus 24 ~~~P---~ivvvG~~SsGKSsliNaLlg~~~lP~~~ 56 (299)
T d2akab1 24 LDLP---QIAVVGGQSAGKSSVLENFVGRDFLPRGS 56 (299)
T ss_dssp CCCC---EEEEEEBTTSCHHHHHHHHHTSCCSCCCS
T ss_pred CCCC---eEEEEcCCCCCHHHHHHHHhCCCcCCCCC
Confidence 4555 378999999999999999999653 4443
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.68 E-value=0.011 Score=53.58 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=25.3
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G 126 (382)
+++++ .++++|.-.||||||+|.|.|.-- +.|
T Consensus 21 ~~~lP---~ivVvG~~ssGKSSliNaLlG~~~lP~~ 53 (306)
T d1jwyb_ 21 PLDLP---QIVVVGSQSSGKSSVLENIVGRDFLPRG 53 (306)
T ss_dssp TTCCC---EEEEEECSSSSHHHHHHHHHTSCCCCC-
T ss_pred CCCCC---eEEEEeCCCCCHHHHHHHHhCCCCCCCC
Confidence 45555 478999999999999999999754 444
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.65 E-value=0.016 Score=53.27 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=26.7
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
...+.++||+|+|||.|.+.|+..+. + -|.+|..
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~~~--~i~~d~s 86 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALGIE--LLRFDMS 86 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTCE--EEEEEGG
T ss_pred ceEEEEECCCcchhHHHHHHHHhhccCC--eeEeccc
Confidence 33677999999999999999999875 3 4555543
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.56 E-value=0.013 Score=50.68 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=18.2
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.+.|+|++|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999998753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.50 E-value=0.015 Score=48.77 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=23.0
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHH
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
++..-+.+. |.-+.|.|+||+|||||.-.+.
T Consensus 6 ~H~~~v~~~-g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHGVLVDVY-GVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EESEEEEET-TEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence 555555554 6678899999999999875544
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.41 E-value=0.015 Score=52.33 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=31.5
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccce-eeeEee
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL-VLFAQT 133 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~-I~i~G~ 133 (382)
++.|.++-|-||+|||||||+-.++.... ..|. ++||.+
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 56789999999999999999998888777 5554 455554
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.41 E-value=0.019 Score=53.92 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=27.0
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++++..+.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 557888999999999999999999999864
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.014 Score=51.37 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=23.1
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+|+++.|.|++|+|||||+--|+--+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 359999999999999999998877543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.018 Score=49.80 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.1
Q ss_pred eeeeeecccCCCchhHHHHHHHhhccc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLSRS 125 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~~~ 125 (382)
.+++|=|+=||||||+++.|.--+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~~ 29 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence 478999999999999999999765533
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.15 E-value=0.021 Score=53.59 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++++.+ .++||+|+|||-|.|.|+.+..
T Consensus 65 ~~p~~ni-LfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 65 ELSKSNI-LLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp TCCCCCE-EEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCcce-eeeCCCCccHHHHHHHHHhhcc
Confidence 5566654 4889999999999999998764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.14 E-value=0.013 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.3
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-+||+|+.|||||||+..|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 3799999999999999999544
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.08 E-value=0.029 Score=46.13 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G 126 (382)
.+.|+|..|+|||||++-+..-.. +.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence 368999999999999998765433 455
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.90 E-value=0.018 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.6
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+||+|.-++|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999988543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.64 E-value=0.018 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.4
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+||||..-+|||||+|.|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999998863
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.62 E-value=0.037 Score=50.98 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=29.8
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
..++| ++.+.||.|+|||.|.+.|++.+. ...-+.++|.++
T Consensus 120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~ 161 (321)
T d1w44a_ 120 RYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP 161 (321)
T ss_dssp EEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCS
T ss_pred ccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHh
Confidence 34455 455689999999999999999865 344566666543
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.61 E-value=0.023 Score=46.95 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=18.4
Q ss_pred eeeecccCCCchhHHHHHHHh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.|+|..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999988644
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=92.51 E-value=0.039 Score=42.59 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=21.2
Q ss_pred CCceeeeeeecccCCCchhHH-HHHHHhhc
Q 016817 95 IPPVITILLMGFSGSGKSSLV-NLMYSVLS 123 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl-~~i~Gl~~ 123 (382)
+++|+.+.|.+|.|||||+.+ ..+.....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~ 33 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECA 33 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhh
Confidence 467999999999999999654 34433333
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.37 E-value=0.03 Score=48.58 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
++.|.|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999887653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.99 E-value=0.035 Score=50.13 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.+||||...||||||++.|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999985
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.82 E-value=0.037 Score=49.84 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhh-c-ccceeeeEee
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVL-S-RSGLVLFAQT 133 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~-~-~~G~I~i~G~ 133 (382)
+.+.+|+..+|+|++|+|||||+..|+.-. . ..+-+.+-+.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~i 105 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 105 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEE
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 577899999999999999999987777553 3 3444444443
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.53 E-value=0.04 Score=49.25 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
..+++|.|.-|.|||||.+.+..-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.46 E-value=0.038 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+||+|.-+||||||++.|.+..
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHh
Confidence 8999999999999999997654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=91.38 E-value=0.049 Score=48.22 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCceeeeeeecccCCCchhH--HHHHHHhh
Q 016817 95 IPPVITILLMGFSGSGKSSL--VNLMYSVL 122 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTL--l~~i~Gl~ 122 (382)
+.+|+.+.|.+|+|||||+. ..++....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~ 35 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI 35 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999973 34444333
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.30 E-value=0.043 Score=46.87 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=28.9
Q ss_pred HHHHHh--cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 234 IYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 234 iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
++++|| .+....+..+++.|.+.. .+..+|++|+++.
T Consensus 111 viIide~d~l~~~a~n~Llk~lEep~----~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 111 VVWVTDAALLTDAAANALLKTLEEPP----AETWFFLATREPE 149 (207)
T ss_dssp EEEESCGGGBCHHHHHHHHHHHTSCC----TTEEEEEEESCGG
T ss_pred eEEechhhhhhhhhhHHHHHHHHhhc----ccceeeeeecChh
Confidence 778999 888888899999999862 4556788898543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.11 E-value=0.041 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.0
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|.||+|+|||-|+++++--..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 56999999999999999986543
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=91.06 E-value=0.062 Score=48.34 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=30.6
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
=+.+-+|+..+|+|++|+|||||+..+.--.. +...+.+-+
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~ 102 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA 102 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeee
Confidence 36788999999999999999999987654444 444444444
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.97 E-value=0.048 Score=47.38 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=28.5
Q ss_pred HHHHHh--cCCCCcchhhhhhccCccccccCCCCeEEEecCC
Q 016817 234 IYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILILTHGD 273 (382)
Q Consensus 234 iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~ 273 (382)
++++|| .|....+..++..|.+.. .+..+|++|+++
T Consensus 118 viiIde~d~l~~~~q~~Llk~lE~~~----~~~~~il~tn~~ 155 (239)
T d1njfa_ 118 VYLIDEVHMLSRHSFNALLKTLEEPP----EHVKFLLATTDP 155 (239)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHSCC----TTEEEEEEESCG
T ss_pred EEEEECcccCCHHHHHHHHHHHhcCC----CCeEEEEEcCCc
Confidence 888999 888888888888888752 456889999854
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.96 E-value=0.041 Score=49.53 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=18.4
Q ss_pred eeeeecccCCCchhHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~ 119 (382)
-+||+|..|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.86 E-value=0.046 Score=48.82 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.+||||-.-+|||||++.|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.84 E-value=0.055 Score=49.46 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=26.5
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEe
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQ 132 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G 132 (382)
.-.+.++||+|+|||.|.+.|+..+. . ..-+.++.
T Consensus 53 ~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~ 89 (315)
T d1qvra3 53 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 89 (315)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred ceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence 33677999999999999999999875 3 33444544
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.00 E-value=0.053 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+||+|.=.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999987544
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.68 E-value=0.071 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.4
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.||||+|+|||+++.-++..+.
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEECCCCCcHHHHHHHHHHHHH
Confidence 56999999999999999997654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.19 E-value=0.084 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.||||.|.|||+++.-++..+.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHHH
Confidence 57999999999999999997653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=88.98 E-value=0.095 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.2
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+||+|.-++|||||++.|.+...
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHHH
Confidence 79999999999999999988765
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.53 E-value=0.12 Score=47.70 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=25.3
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeeeE
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFA 131 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~ 131 (382)
.+.|=|+=||||||+++.|..-+...+.+.+-
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 46788999999999999999877744455443
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.08 E-value=0.088 Score=47.50 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=24.7
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
=+.+-+|+..+|+|++|+|||||+.-+..
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence 36888999999999999999999765543
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=88.04 E-value=0.14 Score=46.98 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=27.4
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
-.++|=|+=||||||+++.|.-.+. ....+.+-.++
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP 42 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP 42 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence 3588999999999999999998777 43455554443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=87.86 E-value=0.14 Score=39.86 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=16.1
Q ss_pred ceeeeeeecccCCCchhHHH
Q 016817 97 PVITILLMGFSGSGKSSLVN 116 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~ 116 (382)
.-+...|.+|.|||||+++-
T Consensus 7 ~~~~~ll~apTGsGKT~~~~ 26 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVP 26 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 34667789999999999763
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.37 E-value=0.13 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=17.8
Q ss_pred ceeeeeeecccCCCchhHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
.|+-+.|++|+|+|||+..-+.+
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHHH
Confidence 46778899999999997654443
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.96 E-value=0.098 Score=47.71 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.5
Q ss_pred CceeeeeeecccCCCchhHH
Q 016817 96 PPVITILLMGFSGSGKSSLV 115 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl 115 (382)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 45889999999999999964
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.89 E-value=0.1 Score=47.76 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.1
Q ss_pred ceeeeeeecccCCCchhHH
Q 016817 97 PVITILLMGFSGSGKSSLV 115 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl 115 (382)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5889999999999999964
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=86.63 E-value=0.18 Score=44.89 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..++--++.|.||-++|||||+++|..++.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 446666889999999999999999999874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.62 E-value=0.15 Score=46.84 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.-.++|=|+=||||||+++.|...+.
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence 34588999999999999999986554
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.24 E-value=0.3 Score=38.96 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=24.1
Q ss_pred eeeeeeecccCCCchh-HHHHHHHhhcccceeee
Q 016817 98 VITILLMGFSGSGKSS-LVNLMYSVLSRSGLVLF 130 (382)
Q Consensus 98 Ge~~alvGpnGsGKST-Ll~~i~Gl~~~~G~I~i 130 (382)
|.+..|+||=.||||| |++.+.......-++.+
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ 35 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV 35 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEE
Confidence 7788999999999999 77777665433334443
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=85.23 E-value=0.17 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=17.4
Q ss_pred eeeecccCCCchh-HHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSS-LVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKST-Ll~~i~Gl~~ 123 (382)
+.|+|+-|||||| |+..++-++.
T Consensus 17 ~lI~g~aGTGKTt~l~~rv~~ll~ 40 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKIAHLIR 40 (306)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHHHHHHHH
Confidence 5699999999996 4566666554
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=84.97 E-value=0.21 Score=42.65 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=26.0
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+++--.+.|.||.++|||++...|+.++.
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 357777899999999999999999998863
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.89 E-value=0.26 Score=38.58 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=27.3
Q ss_pred CceeeeeeecccCCCchhHHHHHH-Hhhccc-c-eee-eEee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMY-SVLSRS-G-LVL-FAQT 133 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~-Gl~~~~-G-~I~-i~G~ 133 (382)
++|=.+.+.|-+|||||||.+.|. .|.... | .|+ ++|.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ 45 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN 45 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence 357788899999999999999984 554533 3 344 4554
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.69 E-value=0.15 Score=46.57 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.5
Q ss_pred ceeeeeeecccCCCchhHH
Q 016817 97 PVITILLMGFSGSGKSSLV 115 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl 115 (382)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5888999999999999987
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=84.46 E-value=0.22 Score=44.07 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.0
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+-.++|+|-.-+|||||+|.|.|-..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 345699999999999999999998543
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.11 E-value=0.2 Score=42.90 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=18.0
Q ss_pred eeeecccCCCchhHHHHHHH
Q 016817 101 ILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~G 120 (382)
++++|.-++|||||+..|..
T Consensus 6 i~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHH
Confidence 89999999999999988753
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.41 E-value=0.17 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=16.6
Q ss_pred eeeeecccCCCchhH-HHHHHHhh
Q 016817 100 TILLMGFSGSGKSSL-VNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTL-l~~i~Gl~ 122 (382)
.+.|.|+-||||||. +..++.++
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHHH
Confidence 366999999999964 45455554
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| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.26 E-value=0.26 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.6
Q ss_pred eeeecccCCCchhHHHHHHHhh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
..||||+|.|||+++.-++..+
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999998777644
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| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.13 E-value=0.29 Score=42.12 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.8
Q ss_pred eeeecccCCCchhHHHHHHHh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl 121 (382)
++++|.-.+|||||+..|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999654
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| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.06 E-value=0.31 Score=41.07 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=30.2
Q ss_pred HHHHHHh--cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 233 EIYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 233 ~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
+|+++|| .|....+..+++.|.+.. .+...|++|+++.
T Consensus 81 KviIId~ad~l~~~aqNaLLK~LEEPp----~~t~fiLit~~~~ 120 (198)
T d2gnoa2 81 KYVIVHDCERMTQQAANAFLKALEEPP----EYAVIVLNTRRWH 120 (198)
T ss_dssp EEEEETTGGGBCHHHHHHTHHHHHSCC----TTEEEEEEESCGG
T ss_pred EEEEEeCccccchhhhhHHHHHHhCCC----CCceeeeccCChh
Confidence 5667899 888888999999999872 4677888998543
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| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=81.83 E-value=0.37 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.5
Q ss_pred eeeeeeecccCCCchhHHHHH-HHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLM-YSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i-~Gl~ 122 (382)
+.++.|.||-|+||||++..+ ..+.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l~~l~ 188 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLLAALI 188 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHHHHHHH
Confidence 568999999999999887543 3443
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| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.06 E-value=0.21 Score=41.72 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.2
Q ss_pred ceeeeeeecccCCCchhHH
Q 016817 97 PVITILLMGFSGSGKSSLV 115 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl 115 (382)
.|.-+.|.+|+|||||+..
T Consensus 39 ~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 39 SGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TCSCEEEECSSHHHHHHHH
T ss_pred cCCCEEEEcCCCCchhHHH
Confidence 3556779999999998764
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| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.63 E-value=0.48 Score=38.88 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=19.0
Q ss_pred eeeecccCCCchhHHHHHHHhhc--ccceeee
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS--RSGLVLF 130 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i 130 (382)
+-|++|+|||||...-+++...- ..|.+.+
T Consensus 26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~ 57 (200)
T d1wp9a1 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLM 57 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEE
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEE
Confidence 34789999999976555544332 3455543
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