Citrus Sinensis ID: 016826
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 382 | ||||||
| 449453179 | 477 | PREDICTED: SPX and EXS domain-containing | 1.0 | 0.800 | 0.853 | 0.0 | |
| 359485581 | 472 | PREDICTED: SPX and EXS domain-containing | 0.997 | 0.807 | 0.866 | 0.0 | |
| 224132622 | 465 | predicted small molecule transporter [Po | 0.981 | 0.806 | 0.848 | 0.0 | |
| 357453507 | 469 | Xenotropic and polytropic retrovirus rec | 1.0 | 0.814 | 0.819 | 0.0 | |
| 388514961 | 469 | unknown [Medicago truncatula] | 1.0 | 0.814 | 0.816 | 0.0 | |
| 356543746 | 472 | PREDICTED: SPX and EXS domain-containing | 1.0 | 0.809 | 0.816 | 0.0 | |
| 356550002 | 471 | PREDICTED: SPX and EXS domain-containing | 1.0 | 0.811 | 0.811 | 0.0 | |
| 388518701 | 469 | unknown [Lotus japonicus] | 0.986 | 0.803 | 0.816 | 0.0 | |
| 357507169 | 430 | SPX and EXS domain-containing protein [M | 0.992 | 0.881 | 0.801 | 1e-179 | |
| 356568338 | 420 | PREDICTED: SPX and EXS domain-containing | 0.992 | 0.902 | 0.801 | 1e-178 |
| >gi|449453179|ref|XP_004144336.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Cucumis sativus] gi|449480887|ref|XP_004156022.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/382 (85%), Positives = 356/382 (93%)
Query: 1 MRMSADLRDLFLYEAFLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQDHLTHR 60
MRMSADLRDLFLYEAFLYYNPLLLVTMMVWLWG+NLWVF+QSNVNY KIF+LDQ+HLTHR
Sbjct: 96 MRMSADLRDLFLYEAFLYYNPLLLVTMMVWLWGINLWVFSQSNVNYAKIFELDQNHLTHR 155
Query: 61 EVWKCATWMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYIAVAMILIFPFDIFYLSSRY 120
E+WKCATWMTI+VPTSMTAYLYLYSHGEVSLAASQPVLLY+AVAMILIFPF+IF+LSSR+
Sbjct: 156 EIWKCATWMTIVVPTSMTAYLYLYSHGEVSLAASQPVLLYVAVAMILIFPFEIFFLSSRF 215
Query: 121 YLLRTLWRIVLPLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQVATIAWFEADSV 180
+LLRTLWRIV PLQAI+F+DFFLADILTSM+KVFSDLERSVCRM+HRQVATIAWFEADSV
Sbjct: 216 FLLRTLWRIVFPLQAITFADFFLADILTSMSKVFSDLERSVCRMIHRQVATIAWFEADSV 275
Query: 181 CGSHSVAIPLVLVLPYLFRLFQCLRQYKDTREKTALFNALKYSTAVPVIFLSALKYHVLP 240
CGSHSVAIP+VLVLPYLFRLFQCLRQYKDT EK L NALKYSTAVPVIFLSALKYHV P
Sbjct: 276 CGSHSVAIPVVLVLPYLFRLFQCLRQYKDTGEKPTLLNALKYSTAVPVIFLSALKYHVFP 335
Query: 241 GSWTNFYRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYV 300
WT+FYRPLWLLSSVLNS YSFYWD+ RDWDLS FTRIFKFNRPH S+LF+G++WVYV
Sbjct: 336 DKWTSFYRPLWLLSSVLNSSYSFYWDVKRDWDLSTFTRIFKFNRPHFFSHLFYGQKWVYV 395
Query: 301 WVIGSNLILRCTWTYKLSAHLRHNYLTVFAITVLEMLRRFQWAFFRVENEWNKMNSKSNI 360
WV+GSNLILRCTWTYKLSAHLRHNYLTVF IT LE+ RRFQW FFRVENEWNKMNSKSNI
Sbjct: 396 WVLGSNLILRCTWTYKLSAHLRHNYLTVFTITALEIFRRFQWIFFRVENEWNKMNSKSNI 455
Query: 361 QLSEKDNTNEEAQSLISNDHNV 382
Q++ + EE + L S++HNV
Sbjct: 456 QITMSNLPTEEDKLLNSSNHNV 477
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485581|ref|XP_002274355.2| PREDICTED: SPX and EXS domain-containing protein 1-like [Vitis vinifera] gi|297739314|emb|CBI28965.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224132622|ref|XP_002327841.1| predicted small molecule transporter [Populus trichocarpa] gi|222837250|gb|EEE75629.1| predicted small molecule transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|357453507|ref|XP_003597031.1| Xenotropic and polytropic retrovirus receptor [Medicago truncatula] gi|355486079|gb|AES67282.1| Xenotropic and polytropic retrovirus receptor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|388514961|gb|AFK45542.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356543746|ref|XP_003540321.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356550002|ref|XP_003543379.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|388518701|gb|AFK47412.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
| >gi|357507169|ref|XP_003623873.1| SPX and EXS domain-containing protein [Medicago truncatula] gi|355498888|gb|AES80091.1| SPX and EXS domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356568338|ref|XP_003552368.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 382 | ||||||
| TAIR|locus:2177251 | 457 | AT5G35730 "AT5G35730" [Arabido | 0.937 | 0.783 | 0.805 | 1.5e-163 | |
| DICTYBASE|DDB_G0271664 | 923 | DDB_G0271664 "SPX/EXS domain-c | 0.816 | 0.338 | 0.348 | 1.8e-44 | |
| FB|FBgn0035649 | 671 | CG10483 [Drosophila melanogast | 0.850 | 0.484 | 0.320 | 2.5e-38 | |
| DICTYBASE|DDB_G0285957 | 919 | xpr1 "SPX/EXS domain-containin | 0.861 | 0.357 | 0.313 | 4.2e-38 | |
| FB|FBgn0030890 | 674 | CG7536 [Drosophila melanogaste | 0.882 | 0.5 | 0.320 | 1.2e-35 | |
| ZFIN|ZDB-GENE-060503-362 | 692 | xpr1 "xenotropic and polytropi | 0.850 | 0.469 | 0.320 | 6.8e-32 | |
| ZFIN|ZDB-GENE-060503-266 | 693 | si:dkey-60b12.7 "si:dkey-60b12 | 0.853 | 0.470 | 0.309 | 1.1e-31 | |
| WB|WBGene00012659 | 710 | Y39A1A.22 [Caenorhabditis eleg | 0.510 | 0.274 | 0.326 | 2.7e-31 | |
| UNIPROTKB|E1C6K2 | 665 | XPR1 "Uncharacterized protein" | 0.837 | 0.481 | 0.294 | 1.5e-30 | |
| DICTYBASE|DDB_G0290647 | 927 | DDB_G0290647 "SPX/EXS domain-c | 0.842 | 0.347 | 0.269 | 2.8e-30 |
| TAIR|locus:2177251 AT5G35730 "AT5G35730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
Identities = 289/359 (80%), Positives = 319/359 (88%)
Query: 1 MRMSADLRDLFLYEAFLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQDHLTHR 60
MRMS DLRDLFLYEAFLYYNPLLLVTMMVWLWGVNLWVF+Q +VNY K+FDLD +HLTHR
Sbjct: 79 MRMSIDLRDLFLYEAFLYYNPLLLVTMMVWLWGVNLWVFSQGSVNYSKVFDLDHNHLTHR 138
Query: 61 EVWKCATWMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYIAVAMILIFPFDIFXXXXXX 120
E+WKC+ WMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYIA A++LIFPFDIF
Sbjct: 139 EMWKCSMWMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYIAFALVLIFPFDIFYLSSRY 198
Query: 121 XXXXTLWRIVLPLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQVATIAWFEADSV 180
TLWRI PLQ I+F DFFLADILTSM KVFSDLERSVCRMVHRQVATIAWFEAD+V
Sbjct: 199 FLLRTLWRIAFPLQPITFPDFFLADILTSMVKVFSDLERSVCRMVHRQVATIAWFEADAV 258
Query: 181 CGSHSVAIPLVLVLPYLFRLFQCLRQYKDTREKTALFNALKYSTAVPVIFLSALKYHVLP 240
CGSH +AIPLVLV PY+ RL QCLRQYKDT+EK++L NALKYSTAVPVIFLSALKYHV+P
Sbjct: 259 CGSHQIAIPLVLVFPYICRLLQCLRQYKDTKEKSSLLNALKYSTAVPVIFLSALKYHVMP 318
Query: 241 GSWTNFYRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYV 300
SWT+FYRPLWL SSV+NSLYSFYWD+TRDWDLS FT+IFKF+RP S L +GR+WVY
Sbjct: 319 ESWTSFYRPLWLFSSVINSLYSFYWDVTRDWDLSGFTKIFKFSRPSTISNLLYGRQWVYF 378
Query: 301 WVIGSNLILRCTWTYKLSAHLRHNYLTVFAITVLEMLRRFQWAFFRVENEWNKMNSKSN 359
WVIGSNL+LRC WTYKLSAHLRHNY+TVF +T +EMLRRFQW FFRVENEWNK+ +KS+
Sbjct: 379 WVIGSNLVLRCAWTYKLSAHLRHNYITVFTMTAMEMLRRFQWVFFRVENEWNKI-TKSH 436
|
|
| DICTYBASE|DDB_G0271664 DDB_G0271664 "SPX/EXS domain-containing protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| FB|FBgn0035649 CG10483 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0285957 xpr1 "SPX/EXS domain-containing protein 3" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0030890 CG7536 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060503-362 xpr1 "xenotropic and polytropic retrovirus receptor 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060503-266 si:dkey-60b12.7 "si:dkey-60b12.7" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| WB|WBGene00012659 Y39A1A.22 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C6K2 XPR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0290647 DDB_G0290647 "SPX/EXS domain-containing protein 5" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00026065001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (472 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 382 | |||
| pfam03124 | 337 | pfam03124, EXS, EXS family | 3e-94 | |
| COG5409 | 384 | COG5409, COG5409, EXS domain-containing protein [S | 1e-36 |
| >gnl|CDD|217378 pfam03124, EXS, EXS family | Back alignment and domain information |
|---|
Score = 284 bits (730), Expect = 3e-94
Identities = 147/346 (42%), Positives = 206/346 (59%), Gaps = 21/346 (6%)
Query: 15 AFLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQ-DHLTHREVWKCATWMTIIV 73
F Y L+ + +WLWG+NL+V+ +S +NYV IF+ D L+HRE+ + A++ T++
Sbjct: 2 LFPLYRGFFLLILGLWLWGLNLYVWKRSGINYVFIFEFDPRTSLSHRELLELASFFTVLW 61
Query: 74 PTSMTAYLYLYSHGEVSLAASQ--PVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIVL 131
S YL L A+ P++L + V +IL PF+IFY S R++LLRTL+RI+L
Sbjct: 62 LLSFLLYLLLEHLELTKPASWVQVPLVLLLIVLLILFLPFNIFYRSGRFWLLRTLFRILL 121
Query: 132 -PLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQVATIAWFEADSVCGSHSVAI-P 189
P + F DFFLAD LTS+ KV +DLE +VC + +D+ CGS V + P
Sbjct: 122 APFYPVKFRDFFLADQLTSLVKVLADLEYTVCYYFNN------GDSSDNTCGSSKVYVLP 175
Query: 190 LVLVLPYLFRLFQCLRQYKDTREKTA-LFNALKYSTAVPVIFLSALKYHVLPGSWTNFYR 248
+V LPY R QCLR+Y+DT + L NALKYSTA+PV+ LS L YR
Sbjct: 176 IVACLPYWIRFLQCLRRYRDTGDAFPHLANALKYSTAIPVVVLSTLYRKYNTSDA---YR 232
Query: 249 PLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLI 308
LW++ S++NS+YSFYWD+ DW L F + NR L L + R+WVY + I +LI
Sbjct: 233 ILWIVFSIINSIYSFYWDVKMDWGL--FQKNSSKNRF-LRDKLLYPRKWVYYFAIVLDLI 289
Query: 309 LRCTWTYKLS---AHLRHNYLTVFAITVLEMLRRFQWAFFRVENEW 351
LR W +S ++H+ L VF + +LE++RRF W FFRVENE
Sbjct: 290 LRFAWLLTVSPLQHSIQHSELGVFLLALLEIIRRFIWNFFRVENEH 335
|
We have named this region the EXS family after (ERD1, XPR1, and SYG1). This family includes C-terminus portions from the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be murine leukaemia virus (MLV) receptors (XPR1). N-terminus portions from these proteins are aligned in the SPX pfam03105 family. The previously noted similarity between SYG1 and MLV receptors over their whole sequences is thus borne out in pfam03105 and this family. While the N-termini aligned in pfam03105 are thought to be involved in signal transduction, the role of the C-terminus sequences aligned in this family is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) yeast proteins. ERD1 proteins are involved in the localisation of endogenous endoplasmic reticulum (ER) proteins. erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localisation label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles. Length = 337 |
| >gnl|CDD|227696 COG5409, COG5409, EXS domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 382 | |||
| PF03124 | 345 | EXS: EXS family; InterPro: IPR004342 The EXS domai | 100.0 | |
| KOG1162 | 617 | consensus Predicted small molecule transporter [In | 100.0 | |
| COG5409 | 384 | EXS domain-containing protein [Signal transduction | 100.0 |
| >PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-84 Score=646.92 Aligned_cols=331 Identities=41% Similarity=0.745 Sum_probs=290.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCCCeeEEEecCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc----
Q 016826 16 FLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQ-DHLTHREVWKCATWMTIIVPTSMTAYLYLYSHGEVS---- 90 (382)
Q Consensus 16 ~~~y~~~~l~~l~~~l~~~nl~vw~~~~INy~~IFe~~~-~~l~~~~~~~~a~~lt~i~~~s~~~~l~~~~~g~~~---- 90 (382)
+++||+++++++++|+||+|+++|+++||||++|||+|| ++++++++++.++.+++++++++..++.....+...
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 578999999999999999999999999999999999997 689999999999999988888877766544332221
Q ss_pred -hhhhhhHHHHHHHHHHHhhchhhhhhhHHHHHHHHHhHhh-cCcceeecchhhhhHhhhhHHHHhhccceeEEEeeccc
Q 016826 91 -LAASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIV-LPLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQ 168 (382)
Q Consensus 91 -~~~~~Pl~l~~~~~~~l~~P~~i~~~~~R~~~~~~l~ril-~pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~~~~~~ 168 (382)
..+..|+++++++++++++|++++++++|+|++++++|++ +|+++|+|+|||+||||||++++++|+++++|++.++.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 1236899999999999999999999999999999999998 58999999999999999999999999999999998643
Q ss_pred ccccccccCCCCcCCccch-hhhHhhhhHHHHHHHHHHHhhcCCCc-chhhhHHHHHhhHHHHHHHHHhhhccCCCCccc
Q 016826 169 VATIAWFEADSVCGSHSVA-IPLVLVLPYLFRLFQCLRQYKDTREK-TALFNALKYSTAVPVIFLSALKYHVLPGSWTNF 246 (382)
Q Consensus 169 ~~~~~~~~~~~~c~~~~~~-~p~~~~lP~~iR~~QClrry~dt~~~-~hL~Na~KY~ss~~vi~~s~~~~~~~~~~~~~~ 246 (382)
. .++++.|++++.. .|+++++|++||++||+|||+||+++ +||.||+||++++++++++++.....++.+...
T Consensus 162 ~-----~~~~~~c~~~~~~~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~ 236 (345)
T PF03124_consen 162 F-----TSPSNQCGSSSWYIDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIW 236 (345)
T ss_pred c-----cCCCCcCccccHhHHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 2 1456789876654 49999999999999999999999999 999999999999999999988665443333334
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhccCCCCccccccccCCCCcccccccCCcchhhhhhhhhhhhhhhhhhhcccc----cc
Q 016826 247 YRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKLSAH----LR 322 (382)
Q Consensus 247 ~~~~wi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~~~~Yy~aiv~n~ilRf~W~~~l~~~----~~ 322 (382)
.+.+|++++++||+||++|||+|||||++.+ .+.+++.||++++||+|++||+||+.|+++||+|++++++. ..
T Consensus 237 ~~~~w~~~~~i~s~Ys~~WDv~~DWgL~~~~--~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~ 314 (345)
T PF03124_consen 237 LFILWIIFALINSLYSFYWDVKMDWGLFQPK--KKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHID 314 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCc--cccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 6889999999999999999999999998755 22467889999999999999999999999999999998873 23
Q ss_pred hhhHHHHHHHHHHHHhhhceeeeeeecchhh
Q 016826 323 HNYLTVFAITVLEMLRRFQWAFFRVENEWNK 353 (382)
Q Consensus 323 ~~~~~~~~l~~lEi~RR~iWnffRlEnEh~k 353 (382)
+++...++++++||+||++||+|||||||+|
T Consensus 315 ~~~~~~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 315 NSEIFIFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred hHHHHHHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 4577889999999999999999999999975
|
The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane |
| >KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5409 EXS domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 382 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 6e-04
Identities = 68/411 (16%), Positives = 119/411 (28%), Gaps = 136/411 (33%)
Query: 11 FLYEAFLYYN--PLLLVTMMVW----LWGVNLWVFAQSNVNYVKIFDLDQDHLTHREVWK 64
FL P ++ M + L+ N VFA+ NV+ ++ K
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQ------------PYLK 139
Query: 65 CATWMTIIVPTSMTAYLYLYS---HGEVSLAASQPVLLYIAVAMILIFPFDIFYLSSRYY 121
+ + P + + G+ +A V L V F IF+L+ +
Sbjct: 140 LRQALLELRPAK---NVLIDGVLGSGKTWVALD--VCLSYKV--QCKMDFKIFWLNLKNC 192
Query: 122 -----LLRTLWRIVLPLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQVATIAWFE 176
+L L ++ L I + +D +++ ++ + R++ +
Sbjct: 193 NSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--- 246
Query: 177 ADSVCGSHSVAIPLVLVL-----PYLFRLF--QCLRQYKDTREKTALFNALKYSTAVPVI 229
+LVL + F C + TR K + + L +T +
Sbjct: 247 --------------LLVLLNVQNAKAWNAFNLSC-KILLTTRFK-QVTDFLSAATTTHIS 290
Query: 230 FLSALKYHVLPGSWTNFYRP--LWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHL 287
H LL L+ R DL + N P
Sbjct: 291 LD-----HHSMT----LTPDEVKSLLLKYLD---------CRPQDLP--REVLTTN-PRR 329
Query: 288 CSYLFHGRRWVYVWVIGSNLI-LRCTWTY-------KLS------------AHLRHNY-- 325
S +I ++ TW KL+ A R +
Sbjct: 330 LS------------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 326 LTVF----AIT--VLEMLRRFQWA---FFRVENEWNKMNSKSNIQLSEKDN 367
L+VF I +L ++ W V NK++ S L EK
Sbjct: 378 LSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYS---LVEKQP 421
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00