Citrus Sinensis ID: 016829

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
MEPETQNHDHQSPETSPSPKCCAKCGGPTTFPPPPKSLYSDISPPPNYRPVRAPAINLPPNNHSQAIILAPVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccEEEEccHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEccccHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHHHHHHHEcEcccccccccccccHcHHHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHHHHccccHHHcccHHHHHcccccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccc
mepetqnhdhqspetspspkccakcggpttfppppkslysdispppnyrpvrapainlppnnhsqaiilapvpqsqkvptitapfefqtpskkiqspddirhfidsdtgkNFLGFVVALSEsirghkisdpchesqtINTIVSILNELLQWaeeipplqqsarygnlayRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPyfndsfgnssridygtghetnFASWLYCLARmgvikeedYHAVVSRVFAKYLELMRKLQLVYClepagshgvwglddyhflpfifgssqlidhkymkpksihnqDILDNFADEYMYLSCIAFVKKVKKGlfaehspllddisgvpnwnkvNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE
mepetqnhdhqspetspspkCCAKCGGPTTFPPPPKSLYSDISPPPNYRPVRAPAINLPPNNHSQAIILAPVPQSQKVPTitapfefqtpskkiqspdDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHspllddisgvpnWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE
MEPETQNHDHQSPETSPSPKCCAKCGGPTTFPPPPKSLYSDISPPPNYRPVRAPAINLPPNNHSQAIILAPVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE
******************************************************************IIL******************************IRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRW*
**************************************************************************************FQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKIS**CHESQTINTIVSILNELLQWAEEIPP******YGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE
**********************AKCGGPTTFPPPPKSLYSDISPPPNYRPVRAPAINLPPNNHSQAIILAPVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE
******************************************SPPPNYRPVRAPAI********************KVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEPETQNHDHQSPETSPSPKCCAKCGGPTTFPPPPKSLYSDISPPPNYRPVRAPAINLPPNNHSQAIILAPVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query382 2.2.26 [Sep-21-2011]
Q2KJ44324 Serine/threonine-protein yes no 0.806 0.950 0.474 3e-84
Q28717323 Serine/threonine-protein yes no 0.767 0.907 0.474 1e-82
P58389323 Serine/threonine-protein yes no 0.803 0.950 0.462 3e-82
Q15257358 Serine/threonine-protein no no 0.803 0.857 0.427 3e-80
Q54WH6 468 Probable serine/threonine yes no 0.806 0.658 0.464 1e-79
Q55CJ3325 Probable serine/threonine no no 0.774 0.910 0.468 3e-79
P0CQ02382 Serine/threonine-protein yes no 0.777 0.777 0.476 1e-77
P0CQ03382 Serine/threonine-protein N/A no 0.777 0.777 0.476 1e-77
Q4PCR0457 Serine/threonine-protein N/A no 0.767 0.641 0.432 2e-73
Q7SEF9449 Serine/threonine-protein N/A no 0.808 0.688 0.455 5e-73
>sp|Q2KJ44|PTPA_BOVIN Serine/threonine-protein phosphatase 2A activator OS=Bos taurus GN=PPP2R4 PE=2 SV=1 Back     alignment and function desciption
 Score =  312 bits (799), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/310 (47%), Positives = 214/310 (69%), Gaps = 2/310 (0%)

Query: 70  APVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKIS 129
            P   S+  P  T    F  P K+I +  D+  +  S    +++GF++ L+E ++G K+S
Sbjct: 8   TPSDSSEDAPPTTQ--NFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLS 65

Query: 130 DPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLP 189
                S+ I  +V++LN L +W +E PP+ Q +R+GN AYRTW+++L   +E+L+   +P
Sbjct: 66  FEYKVSEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDQEAENLVATVVP 125

Query: 190 NELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVF 249
             L AAV E+  Y  +S GNS+RIDYGTGHE  FA++L CL ++GV++ +D  A+V +VF
Sbjct: 126 TNLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVF 185

Query: 250 AKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILD 309
            +YLE+MRKLQ  Y +EPAGS GVWGLDD+ FLPFI+GSSQLIDH Y++P+   ++  ++
Sbjct: 186 NRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVN 245

Query: 310 NFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPI 369
               +YM+L CI F+ ++K G FAEHS  L +IS VP+W+KVN GL++MYKAE LEK P+
Sbjct: 246 ENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPV 305

Query: 370 MQHFLFGSLI 379
           +QHF FGSL+
Sbjct: 306 IQHFKFGSLL 315
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Acts as a regulatory subunit for serine/threonine-protein phosphatase 2A (PP2A) modulating its activity or substrate specificity, probably by inducing a conformational change in the catalytic subunit, a proposed direct target of the PPIase. Can reactivate inactive phosphatase PP2A-phosphatase methylesterase complexes (PP2A(i)) in presence of ATP and Mg(2+) (By similarity). Reversibly stimulates the variable phosphotyrosyl phosphatase activity of PP2A core heterodimer PP2A(D) in presence of ATP and Mg(2+) (in vitro). The phosphotyrosyl phosphatase activity is dependent of an ATPase activty of the PP2A(D):PPP2R4 complex. Is involved in apoptosis; the function appears to be independent from PP2A.
Bos taurus (taxid: 9913)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q28717|PTPA_RABIT Serine/threonine-protein phosphatase 2A activator OS=Oryctolagus cuniculus GN=PPP2R4 PE=1 SV=1 Back     alignment and function description
>sp|P58389|PTPA_MOUSE Serine/threonine-protein phosphatase 2A activator OS=Mus musculus GN=Ppp2r4 PE=1 SV=1 Back     alignment and function description
>sp|Q15257|PTPA_HUMAN Serine/threonine-protein phosphatase 2A activator OS=Homo sapiens GN=PPP2R4 PE=1 SV=3 Back     alignment and function description
>sp|Q54WH6|PTPA2_DICDI Probable serine/threonine-protein phosphatase 2A activator 2 OS=Dictyostelium discoideum GN=ppp2r4B PE=3 SV=1 Back     alignment and function description
>sp|Q55CJ3|PTPA1_DICDI Probable serine/threonine-protein phosphatase 2A activator 1 OS=Dictyostelium discoideum GN=ppp2r4A PE=3 SV=1 Back     alignment and function description
>sp|P0CQ02|PTPA2_CRYNJ Serine/threonine-protein phosphatase 2A activator 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RRD2 PE=3 SV=1 Back     alignment and function description
>sp|P0CQ03|PTPA2_CRYNB Serine/threonine-protein phosphatase 2A activator 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RRD2 PE=3 SV=1 Back     alignment and function description
>sp|Q4PCR0|PTPA2_USTMA Serine/threonine-protein phosphatase 2A activator 2 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RRD2 PE=3 SV=1 Back     alignment and function description
>sp|Q7SEF9|PTPA2_NEUCR Serine/threonine-protein phosphatase 2A activator 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rrd-2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
224084628396 predicted protein [Populus trichocarpa] 0.994 0.959 0.778 1e-180
449469847399 PREDICTED: serine/threonine-protein phos 0.986 0.944 0.755 1e-175
449528849461 PREDICTED: serine/threonine-protein phos 0.984 0.815 0.755 1e-174
224063259390 predicted protein [Populus trichocarpa] 0.986 0.966 0.756 1e-173
359492453385 PREDICTED: serine/threonine-protein phos 1.0 0.992 0.748 1e-171
357471679401 Serine/threonine protein phosphatase 2A 0.963 0.917 0.768 1e-171
147787396392 hypothetical protein VITISV_035645 [Viti 0.997 0.971 0.75 1e-170
297813233391 hypothetical protein ARALYDRAFT_489715 [ 0.952 0.930 0.759 1e-168
18413175392 phosphotyrosyl phosphatase activator (PT 0.994 0.969 0.730 1e-168
21593155392 putative phosphotyrosyl phosphatase acti 0.994 0.969 0.727 1e-167
>gi|224084628|ref|XP_002307365.1| predicted protein [Populus trichocarpa] gi|222856814|gb|EEE94361.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/384 (77%), Positives = 340/384 (88%), Gaps = 4/384 (1%)

Query: 2   EPETQNHDHQSP---ETSPSPKCCAKCGGPTTFPPPP-KSLYSDISPPPNYRPVRAPAIN 57
           EP+  NH+HQ P    T+P    C KCGGP +FPPPP +S +S+ISPPP YRP+R+PAIN
Sbjct: 3   EPQEHNHNHQDPPKSSTAPLSPTCVKCGGPCSFPPPPTQSQWSEISPPPIYRPIRSPAIN 62

Query: 58  LPPNNHSQAIILAPVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVV 117
           LPPN +SQAIILAPVPQSQKVPTI+ P  FQ+PSKKIQSPDDIR FI+SD+ KNFLGFVV
Sbjct: 63  LPPNTNSQAIILAPVPQSQKVPTISLPHTFQSPSKKIQSPDDIRRFINSDSSKNFLGFVV 122

Query: 118 ALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLT 177
           ALSESIR HKISD CHES T+  IVS++  L+ W EEIPP+QQS RYGN++YRTWH+RL 
Sbjct: 123 ALSESIRAHKISDSCHESTTLKNIVSVIESLVHWIEEIPPVQQSYRYGNISYRTWHNRLV 182

Query: 178 DNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIK 237
           +NSE+LML+FLP+ L+++ +EIVPYF DSFGNSSRIDYGTGHETNFA+WLYCLARMG+I+
Sbjct: 183 ENSENLMLQFLPDNLKSSTVEIVPYFTDSFGNSSRIDYGTGHETNFAAWLYCLARMGIIE 242

Query: 238 EEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYM 297
           E DY AVVSRVF KY+ELMRKLQ VY LEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYM
Sbjct: 243 EVDYQAVVSRVFVKYIELMRKLQSVYNLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYM 302

Query: 298 KPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLK 357
           KPKSIHN+DIL+NF++EYMYLSCI  +KKVKKGLFAEHSPLLDDISGVPNW KVNSGLLK
Sbjct: 303 KPKSIHNEDILENFSNEYMYLSCILLIKKVKKGLFAEHSPLLDDISGVPNWKKVNSGLLK 362

Query: 358 MYKAEVLEKVPIMQHFLFGSLIRW 381
           MY+AEVLEKVPIMQHFLFGSLI+W
Sbjct: 363 MYRAEVLEKVPIMQHFLFGSLIQW 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449469847|ref|XP_004152630.1| PREDICTED: serine/threonine-protein phosphatase 2A activator-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449528849|ref|XP_004171415.1| PREDICTED: serine/threonine-protein phosphatase 2A activator-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224063259|ref|XP_002301065.1| predicted protein [Populus trichocarpa] gi|222842791|gb|EEE80338.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492453|ref|XP_002284086.2| PREDICTED: serine/threonine-protein phosphatase 2A activator-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357471679|ref|XP_003606124.1| Serine/threonine protein phosphatase 2A activator [Medicago truncatula] gi|355507179|gb|AES88321.1| Serine/threonine protein phosphatase 2A activator [Medicago truncatula] Back     alignment and taxonomy information
>gi|147787396|emb|CAN62341.1| hypothetical protein VITISV_035645 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297813233|ref|XP_002874500.1| hypothetical protein ARALYDRAFT_489715 [Arabidopsis lyrata subsp. lyrata] gi|297320337|gb|EFH50759.1| hypothetical protein ARALYDRAFT_489715 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18413175|ref|NP_567342.1| phosphotyrosyl phosphatase activator (PTPA) family protein [Arabidopsis thaliana] gi|13430442|gb|AAK25843.1|AF360133_1 putative phosphotyrosyl phosphatase activator protein [Arabidopsis thaliana] gi|14532730|gb|AAK64066.1| putative phosphotyrosyl phosphatase activator protein [Arabidopsis thaliana] gi|15010620|gb|AAK73969.1| AT4g08960/T3H13_2 [Arabidopsis thaliana] gi|332657301|gb|AEE82701.1| phosphotyrosyl phosphatase activator (PTPA) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593155|gb|AAM65104.1| putative phosphotyrosyl phosphatase activator protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
TAIR|locus:2138748392 AT4G08960 [Arabidopsis thalian 0.994 0.969 0.732 9.9e-158
UNIPROTKB|Q2KJ44324 PPP2R4 "Serine/threonine-prote 0.803 0.947 0.475 1.1e-78
UNIPROTKB|F1PD37323 PPP2R4 "Uncharacterized protei 0.806 0.953 0.470 1.1e-78
UNIPROTKB|Q15257358 PPP2R4 "Serine/threonine-prote 0.649 0.692 0.528 1.4e-78
ZFIN|ZDB-GENE-040801-11324 ppp2r4 "protein phosphatase 2A 0.787 0.929 0.468 1.6e-77
UNIPROTKB|Q28717323 PPP2R4 "Serine/threonine-prote 0.806 0.953 0.466 2.1e-77
MGI|MGI:1346006323 Ppp2r4 "protein phosphatase 2A 0.801 0.947 0.467 3.4e-77
UNIPROTKB|A6PVN5329 PPP2R4 "Serine/threonine-prote 0.803 0.933 0.466 4.3e-77
UNIPROTKB|F1RR44357 PPP2R4 "Uncharacterized protei 0.649 0.694 0.524 1.4e-76
UNIPROTKB|Q5ZM56321 LOC100859123 "Uncharacterized 0.767 0.912 0.467 1e-75
TAIR|locus:2138748 AT4G08960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1537 (546.1 bits), Expect = 9.9e-158, P = 9.9e-158
 Identities = 288/393 (73%), Positives = 330/393 (83%)

Query:     1 MEP--ETQNHDHQSPETSPS-------PK-CCAKCGGPT-TFPPPPKSLYSDISPPPNYR 49
             MEP  E QN   +S   +P+       P  CC  CGGPT +  PPP + + ++SPPPNYR
Sbjct:     1 MEPPKEQQNTPEKSISDAPATISSAFPPSGCCTNCGGPTISEAPPPLASFPEMSPPPNYR 60

Query:    50 PVRAPAINLPPNNHSQAIILAPVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTG 109
             P+RAPAINLP N  SQAIIL+PVP +++VP ++ P+ FQ+P K+I SPDDIR F +S + 
Sbjct:    61 PIRAPAINLPHN--SQAIILSPVPHAEQVPVVSPPYHFQSPVKRIHSPDDIRRFHESASC 118

Query:   110 KNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAY 169
             KNFLGFVV+LSESIRG KISDPCH S T+  IVSIL  LLQW +EIPP QQSARYGN+++
Sbjct:   119 KNFLGFVVSLSESIRGFKISDPCHISPTVAAIVSILETLLQWIDEIPPAQQSARYGNVSF 178

Query:   170 RTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYC 229
             R+WH RL +  ESL+L FLP E + +VIEIVPYF DSFGNSSRIDYGTGHETNFA+WLYC
Sbjct:   179 RSWHERLRERGESLILEFLPEEFKESVIEIVPYFFDSFGNSSRIDYGTGHETNFAAWLYC 238

Query:   230 LARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSS 289
             LARMG++KEEDYH++V+RVF KYLELMRKLQ+VYCLEPAGSHGVWGLDDYHFLPFIFGSS
Sbjct:   239 LARMGIVKEEDYHSLVARVFVKYLELMRKLQMVYCLEPAGSHGVWGLDDYHFLPFIFGSS 298

Query:   290 QLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWN 349
             QLIDHKYMKPKSIHN DIL+NF+ EYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNW 
Sbjct:   299 QLIDHKYMKPKSIHNDDILENFSSEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWK 358

Query:   350 KVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382
             KVNSGLLKMY+ EVLEKVPIMQHFLFG LI+WE
Sbjct:   359 KVNSGLLKMYRVEVLEKVPIMQHFLFGWLIKWE 391
GO:0005737 "cytoplasm" evidence=ISM
GO:0019211 "phosphatase activator activity" evidence=IEA;ISS
UNIPROTKB|Q2KJ44 PPP2R4 "Serine/threonine-protein phosphatase 2A activator" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PD37 PPP2R4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15257 PPP2R4 "Serine/threonine-protein phosphatase 2A activator" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-11 ppp2r4 "protein phosphatase 2A activator, regulatory subunit 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q28717 PPP2R4 "Serine/threonine-protein phosphatase 2A activator" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
MGI|MGI:1346006 Ppp2r4 "protein phosphatase 2A, regulatory subunit B (PR 53)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6PVN5 PPP2R4 "Serine/threonine-protein phosphatase 2A activator" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR44 PPP2R4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZM56 LOC100859123 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P58389PTPA_MOUSE5, ., 2, ., 1, ., 80.46270.80360.9504yesno
Q2KJ44PTPA_BOVIN5, ., 2, ., 1, ., 80.47410.80620.9506yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.10.766
4th Layer5.2.1.80.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_V000808
hypothetical protein (396 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
pfam03095298 pfam03095, PTPA, Phosphotyrosyl phosphate activato 1e-170
cd04087266 cd04087, PTPA, Phosphotyrosyl phosphatase activato 1e-160
COG5057353 COG5057, LAG1, Phosphotyrosyl phosphatase activato 1e-119
>gnl|CDD|217364 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein Back     alignment and domain information 
 Score =  475 bits (1226), Expect = e-170
 Identities = 162/294 (55%), Positives = 215/294 (73%), Gaps = 1/294 (0%)

Query: 90  PSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELL 149
           P K+I SP D+  F+ S    + L F+  LS+S++G  ISD    S  +  ++ IL++L 
Sbjct: 1   PVKRILSPSDLELFLRSQAYYDILAFIQKLSDSVQGKPISDTFPISPAVRKLLEILDKLD 60

Query: 150 QWAEEIPPLQQSA-RYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFG 208
              +E PPL Q+  R+GN A+R WH +L + + SL+   LP+    A+ E+  Y  +SFG
Sbjct: 61  ALIDETPPLDQNPSRFGNKAFRDWHDKLEERAPSLLSELLPSSKDEAINELSYYLLNSFG 120

Query: 209 NSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPA 268
           N +RIDYGTGHE NF ++L CL ++G++ EED  A+V RVFA+YLELMR+LQL Y LEPA
Sbjct: 121 NRTRIDYGTGHELNFLAFLLCLFKLGILTEEDEGALVLRVFARYLELMRRLQLTYWLEPA 180

Query: 269 GSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVK 328
           GSHGVWGLDDY FLPFIFG++QL+ H  +KPKSIHN++I++ + DEY+YL CIAF+ KVK
Sbjct: 181 GSHGVWGLDDYQFLPFIFGAAQLLGHPPIKPKSIHNEEIVEEYRDEYLYLGCIAFINKVK 240

Query: 329 KGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382
            G F EHSP+LDDISGV +W+KVN GL+KMYKAEVL K P++QHFLFGSL+ W 
Sbjct: 241 TGPFREHSPMLDDISGVKSWSKVNQGLIKMYKAEVLGKFPVVQHFLFGSLLPWP 294

Phosphotyrosyl phosphatase activator (PTPA) proteins stimulate the phosphotyrosyl phosphatase (PTPase) activity of the dimeric form of protein phosphatase 2A (PP2A). PTPase activity in PP2A (in vitro) is relatively low when compared to the better recognised phosphoserine/ threonine protein phosphorylase activity. The specific biological role of PTPA is unknown, Basal expression of PTPA depends on the activity of a ubiquitous transcription factor, Yin Yang 1 (YY1). The tumour suppressor protein p53 can inhibit PTPA expression through an unknown mechanism that negatively controls YY1. Length = 298
>gnl|CDD|239754 cd04087, PTPA, Phosphotyrosyl phosphatase activator (PTPA) is also known as protein phosphatase 2A (PP2A) phosphatase activator Back     alignment and domain information
>gnl|CDD|227390 COG5057, LAG1, Phosphotyrosyl phosphatase activator [Cell division and chromosome partitioning / Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 382
PF03095299 PTPA: Phosphotyrosyl phosphate activator (PTPA) pr 100.0
KOG2867367 consensus Phosphotyrosyl phosphatase activator [Ce 100.0
cd04087266 PTPA Phosphotyrosyl phosphatase activator (PTPA) i 100.0
COG5057353 LAG1 Phosphotyrosyl phosphatase activator [Cell di 100.0
>PF03095 PTPA: Phosphotyrosyl phosphate activator (PTPA) protein; InterPro: IPR004327 Phosphotyrosyl phosphatase activator (PTPA) proteins stimulate the phosphotyrosyl phosphatase (PTPase) activity of the dimeric form of protein phosphatase 2A (PP2A) Back     alignment and domain information 
Probab=100.00  E-value=8.8e-133  Score=972.53  Aligned_cols=293  Identities=56%  Similarity=1.039  Sum_probs=275.7

Q ss_pred             cccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCC-CCCCCcHHHHHHHHHHHHHHHHHHhCCCCCC-CCCccc
Q 016829           89 TPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKIS-DPCHESQTINTIVSILNELLQWAEEIPPLQQ-SARYGN  166 (382)
Q Consensus        89 ~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~-~~~~~S~~v~~ll~iL~~L~~~ide~PP~~~-p~RFGN  166 (382)
                      .|+|||.+++||++|++|+||++|++||++||+||+|++++ +..+.|++|++|+++|++|++||+|+||+++ |+||||
T Consensus         1 ~P~KrI~~~~D~~~f~~S~Ay~~i~~FI~~l~~sV~g~~~~~~~~~~S~~v~~ll~iL~~l~~~i~e~PP~~~~p~RFGN   80 (299)
T PF03095_consen    1 TPVKRILSPEDMEKFKRSQAYADIIGFIQNLNESVKGKKLSTDDYPVSENVQKLLDILDTLEQWIDEIPPVDQGPSRFGN   80 (299)
T ss_dssp             --EE---SCCHHHHHHTSHHHHHHHHHHHHHHHHHTT-STTTSTSSSSHHHHHHHHHHHHHHHHHHTS---SS-STTSS-
T ss_pred             CCcceECCHhHHHHHcCCHHHHHHHHHHHHHHHHccCCCCCCcccccChHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence            49999999999999999999999999999999999999999 8899999999999999999999999999998 999999


Q ss_pred             hHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccccchhh
Q 016829          167 LAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVS  246 (382)
Q Consensus       167 ~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~~a~vL  246 (382)
                      +|||+|++||++++++|+++++|++.+++++||..||.+||||+|||||||||||||+||||||+|+|+++++|..++||
T Consensus        81 ~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~~L~~lg~l~~~d~~a~vL  160 (299)
T PF03095_consen   81 KAFRTWHDKLEEEAPSLLEDILPSSLCGAIIELSYYLLNSFGNSTRIDYGTGHELSFLAFLCCLFKLGILTEEDYPALVL  160 (299)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHSTGGGGGGHHHHHHHHHTSSSBTTTTEEEHHHHHHHHHHHHHHHHTTSSTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHhCcCCCeeeecCcHHHHHHHHHHHHHHHcCCCCccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHHHHHHH
Q 016829          247 RVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKK  326 (382)
Q Consensus       247 ~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~fI~~  326 (382)
                      +||.|||++||+||++|+|||||||||||||||||||||||||| ++|+.++|++|+|+++|++|+++||||+||+||++
T Consensus       161 ~vF~~Yl~l~R~Lq~~Y~LEPAGSHGVWGLDDy~fLPfi~GsaQ-~~~~~~~P~~i~~~~~v~~~~~~yly~~~I~fI~~  239 (299)
T PF03095_consen  161 RVFNRYLELVRRLQSTYRLEPAGSHGVWGLDDYQFLPFIFGSAQ-LDHPPIKPKSILDPDIVEEYRDDYLYLDCIDFINK  239 (299)
T ss_dssp             THHHHHHHHHHHHHHHCT-EECSCCCCCSSSSS-SHHHHHHHHH-TTTSSGGGGGGGSHHHHHHHTTT-HHHHHHHHHHH
T ss_pred             eeHHHHHHHHHHHHHheeeccCCCCCCCccccceeecccccccc-ccCCCCChHHhcCHHHHHHhcccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999 89999999999999999999999999999999999


Q ss_pred             hccccccccChhhhhccCCCChhhhhHHHHHHHHHHhcCCCcccccccccccccCC
Q 016829          327 VKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE  382 (382)
Q Consensus       327 vK~GpF~EHSpmL~dIS~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~~  382 (382)
                      +|+|||+||||||||||+|++|+|||+||||||+||||+||||||||+||+||+|+
T Consensus       240 ~K~gpf~ehSp~L~~Is~v~~W~KV~~GliKMY~~EVL~KfpVvQHf~FG~ll~~~  295 (299)
T PF03095_consen  240 VKTGPFREHSPMLWDISGVPSWSKVNSGLIKMYKAEVLGKFPVVQHFWFGSLLPFD  295 (299)
T ss_dssp             HTTS-HHHHSHHHHHHTTSSSHHHHHHHHHHHHHHHTTT-HHHHTTSEBBSSSBSS
T ss_pred             hCCCcHHHHhHHHHhhhcCCCCcchhhHHHHHHHHHHhhcchhhhhhhhhccccCC
Confidence            99999999999999999999999999999999999999999999999999999995

PTPase activity in PP2A (in vitro) is relatively low when compared to the better recognised phosphoserine/ threonine protein phosphorylase activity. The specific biological role of PTPA is unknown, Basal expression of PTPA depends on the activity of a ubiquitous transcription factor, Yin Yang 1 (YY1). The tumour suppressor protein p53 can inhibit PTPA expression through an unknown mechanism that negatively controls YY1 [].; GO: 0019211 phosphatase activator activity; PDB: 2HV7_H 2HV6_A 2IXM_A 2G62_A 2IXN_B 2IXO_B 2IXP_B.
>KOG2867 consensus Phosphotyrosyl phosphatase activator [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] Back     alignment and domain information
>cd04087 PTPA Phosphotyrosyl phosphatase activator (PTPA) is also known as protein phosphatase 2A (PP2A) phosphatase activator Back     alignment and domain information
>COG5057 LAG1 Phosphotyrosyl phosphatase activator [Cell division and chromosome partitioning / Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
2hv6_A323 Crystal Structure Of The Phosphotyrosyl Phosphatase 3e-85
2g62_A325 Crystal Structure Of Human Ptpa Length = 325 9e-85
2ixm_A303 Structure Of Human Ptpa Length = 303 2e-84
2ixn_A310 Crystal Structure Of The Pp2a Phosphatase Activator 5e-70
2ixp_A323 Crystal Structure Of The Pp2a Phosphatase Activator 2e-52
2ixo_A323 Crystal Structure Of The Pp2a Phosphatase Activator 8e-52
>pdb|2HV6|A Chain A, Crystal Structure Of The Phosphotyrosyl Phosphatase Activator Length = 323 Back     alignment and structure 
Iteration: 1

 Score =  311 bits (798), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 146/309 (47%), Positives = 216/309 (69%), Gaps = 2/309 (0%)
Query: 71  PVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISD 130
           P   S++ P  T    F  P K+I +  D+  +  S    +++GF++ L+E ++G K++ 
Sbjct: 9   PPDSSEEAPPATQ--NFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTF 66
Query: 131 PCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPN 190
               S+ I  +V++LN L +W +E PP+ Q +R+GN AYRTW+++L + +E+L+   +P 
Sbjct: 67  EYRVSEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPT 126
Query: 191 ELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFA 250
            L AAV E+  Y  +S GNS+RIDYGTGHE  FA++L CL ++GV++ +D  A+V +VF 
Sbjct: 127 HLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFN 186
Query: 251 KYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDN 310
           +YLE+MRKLQ  Y +EPAGS GVWGLDD+ FLPFI+GSSQLIDH Y++P+   ++  ++ 
Sbjct: 187 RYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNE 246
Query: 311 FADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIM 370
              +YM+L CI F+ ++K G FAEHS  L +IS VP+W+KVN GL++MYKAE LEK P++
Sbjct: 247 NHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVI 306
Query: 371 QHFLFGSLI 379
           QHF FGSL+
Sbjct: 307 QHFKFGSLL 315
>pdb|2G62|A Chain A, Crystal Structure Of Human Ptpa Length = 325 Back     alignment and structure
>pdb|2IXM|A Chain A, Structure Of Human Ptpa Length = 303 Back     alignment and structure
>pdb|2IXN|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2 Ptpa2 Length = 310 Back     alignment and structure
>pdb|2IXP|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1 Ptpa1 In Complex With Model Substrate Length = 323 Back     alignment and structure
>pdb|2IXO|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1 Ptpa1 Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
2ixm_A303 Serine/threonine-protein phosphatase 2A regulatory 1e-149
2ixn_A310 Serine/threonine-protein phosphatase 2A activator; 1e-144
2ixo_A323 Serine/threonine-protein phosphatase 2A activator 1e-136
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A Length = 303 Back     alignment and structure
 Score =  423 bits (1088), Expect = e-149
 Identities = 141/297 (47%), Positives = 210/297 (70%)

Query: 86  EFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSIL 145
            F  P K+I +  D+  +  S    +++GF++ L+E ++G K++     S+ I  ++++L
Sbjct: 3   NFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALL 62

Query: 146 NELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFND 205
           N L +W +E PP+ Q +R+GN AYRTW+++L + +E+L+   +P  L AAV E+  Y  +
Sbjct: 63  NTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKE 122

Query: 206 SFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCL 265
           S GNS+RIDYGTGHE  FA++L CL ++GV++ +D  A+V +VF +YLE+MRKLQ  Y +
Sbjct: 123 SVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRM 182

Query: 266 EPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVK 325
           EPAGS GVWGLDD+ FLPFI+GSSQLIDH Y++P+   ++  ++    +YM+L CI F+ 
Sbjct: 183 EPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFIT 242

Query: 326 KVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382
           ++K G FAEHS  L +IS VP+W+KVN GL++MYKAE LEK P++QHF FGSL+   
Sbjct: 243 EMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIH 299
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase activator prolyl isomerase PTPA, isomerase; 2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1 Length = 310 Back     alignment and structure
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A* Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
2ixm_A303 Serine/threonine-protein phosphatase 2A regulatory 100.0
2ixn_A310 Serine/threonine-protein phosphatase 2A activator; 100.0
2ixo_A323 Serine/threonine-protein phosphatase 2A activator 100.0
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A Back     alignment and structure
Probab=100.00  E-value=7.5e-136  Score=992.57  Aligned_cols=298  Identities=47%  Similarity=0.917  Sum_probs=294.2

Q ss_pred             CccccccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCCCCc
Q 016829           85 FEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARY  164 (382)
Q Consensus        85 ~~f~~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~~~~~~S~~v~~ll~iL~~L~~~ide~PP~~~p~RF  164 (382)
                      ++|.+|+|||.+++||++|++|+||++|++||++||+||+|+++++..+.|++|++|++||++|++||||+||+++|+||
T Consensus         2 ~~f~~P~KrI~~~~D~~~f~~S~ay~~i~~fI~~l~~sv~g~~~~~~~~~s~~v~~l~~iL~~l~~~i~e~PP~~~p~RF   81 (303)
T 2ixm_A            2 QNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALLNTLDRWIDETPPVDQPSRF   81 (303)
T ss_dssp             --CCCCEECCCSSHHHHHHHTBHHHHHHHHHHHHHHHHTTTCCTTCCCCCCHHHHHHHHHHHHHHHHHHTSCCCCCSCSS
T ss_pred             CCcCCCeeeeCCHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccccch
Q 016829          165 GNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAV  244 (382)
Q Consensus       165 GN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~~a~  244 (382)
                      ||+|||+|+++|++++++|+++++|++..++++||..||.+||||++||||||||||||+||||||+|+|+|+++|..++
T Consensus        82 GN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~cL~klgil~~~d~~a~  161 (303)
T 2ixm_A           82 GNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAI  161 (303)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHHTTSCGGGGGGHHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTSSCGGGHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhCcCCCccCccCcHHHHHHHHHHHHHHHcCCCccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHHHHH
Q 016829          245 VSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFV  324 (382)
Q Consensus       245 vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~fI  324 (382)
                      ||+||.|||++|||||++|+|||||||||||||||||||||||||||++|++++|++|+|+++|++|+++||||+||+||
T Consensus       162 vL~vF~~Yl~l~R~Lq~tY~LEPAGSHGVWgLDDy~FLPfifGsaQL~~~~~~~P~~i~~~~ive~~~~~ymy~~~I~fI  241 (303)
T 2ixm_A          162 VFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFI  241 (303)
T ss_dssp             HHTHHHHHHHHHHHHHHHTTCEESSCCGGGCSSSSCCHHHHHHHHHTTTCSSCCGGGGGCHHHHHHHGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCCCccccchhhhhhHHHhHHHHccCCCCCchhhcCHHHHHHhcccCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccccccChhhhhccCCCChhhhhHHHHHHHHHHhcCCCcccccccccccccCC
Q 016829          325 KKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE  382 (382)
Q Consensus       325 ~~vK~GpF~EHSpmL~dIS~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~~  382 (382)
                      ++||+|||+||||||||||||++|+|||+||+|||+||||+||||||||+||+||+|+
T Consensus       242 ~~vK~gpf~eHSp~L~dIS~v~~W~KV~~GmiKMY~aEVL~KfpVvQHf~FGsll~~~  299 (303)
T 2ixm_A          242 TEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIH  299 (303)
T ss_dssp             HHHCCSCHHHHCHHHHHHTTSSCHHHHHHHHHHHHHHHTTTCHHHHTTCEECSSSCSS
T ss_pred             HHcCCCcHHhhCHHHHhhhcCCChHHHHHHHHHHHHHHHhccccchhhhhhhcccCCC
Confidence            9999999999999999999999999999999999999999999999999999999995
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase activator prolyl isomerase PTPA, isomerase; 2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1 Back     alignment and structure
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 382
d2ixma1300 a.268.1.1 (A:23-322) Serine/threonine-protein phos 1e-156
d2ixoa1316 a.268.1.1 (A:2-317) Serine/threonine-protein phosp 1e-142
d2ixna1297 a.268.1.1 (A:3-299) Serine/threonine-protein phosp 1e-140
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

class: All alpha proteins
fold: PTPA-like
superfamily: PTPA-like
family: PTPA-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  438 bits (1128), Expect = e-156
 Identities = 141/296 (47%), Positives = 210/296 (70%)

Query: 87  FQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILN 146
           F  P K+I +  D+  +  S    +++GF++ L+E ++G K++     S+ I  ++++LN
Sbjct: 1   FIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALLN 60

Query: 147 ELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDS 206
            L +W +E PP+ Q +R+GN AYRTW+++L + +E+L+   +P  L AAV E+  Y  +S
Sbjct: 61  TLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKES 120

Query: 207 FGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLE 266
            GNS+RIDYGTGHE  FA++L CL ++GV++ +D  A+V +VF +YLE+MRKLQ  Y +E
Sbjct: 121 VGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRME 180

Query: 267 PAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKK 326
           PAGS GVWGLDD+ FLPFI+GSSQLIDH Y++P+   ++  ++    +YM+L CI F+ +
Sbjct: 181 PAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITE 240

Query: 327 VKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382
           +K G FAEHS  L +IS VP+W+KVN GL++MYKAE LEK P++QHF FGSL+   
Sbjct: 241 MKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIH 296
>d2ixoa1 a.268.1.1 (A:2-317) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 Back     information, alignment and structure
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
d2ixma1300 Serine/threonine-protein phosphatase 2A regulatory 100.0
d2ixna1297 Serine/threonine-protein phosphatase 2A regulatory 100.0
d2ixoa1316 Serine/threonine-protein phosphatase 2A regulatory 100.0
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: PTPA-like
superfamily: PTPA-like
family: PTPA-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-135  Score=982.62  Aligned_cols=296  Identities=48%  Similarity=0.925  Sum_probs=293.8

Q ss_pred             cccccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc
Q 016829           87 FQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGN  166 (382)
Q Consensus        87 f~~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~~~~~~S~~v~~ll~iL~~L~~~ide~PP~~~p~RFGN  166 (382)
                      |..|+|||.+++||+.|++|+||++|++||++||+||+|++++++.+.|++|++|+++|++|++||+|+||+++++||||
T Consensus         1 f~~P~KrI~~~~D~~~f~~S~ay~~i~~fI~~l~~sv~g~~~~~~~~~S~~i~~l~~iL~~l~~~i~e~PP~~~~~RFGN   80 (300)
T d2ixma1           1 FIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALLNTLDRWIDETPPVDQPSRFGN   80 (300)
T ss_dssp             CCCCEECCCSSHHHHHHHTBHHHHHHHHHHHHHHHHTTTCCTTCCCCCCHHHHHHHHHHHHHHHHHHTSCCCCCSCSSSC
T ss_pred             CCCCeeccCCHhHHHHHhcCHHHHHHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccccchhh
Q 016829          167 LAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVS  246 (382)
Q Consensus       167 ~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~~a~vL  246 (382)
                      +|||+|+++|++++++|+++++|+..+++++||..||.+||||+|||||||||||||+||||||+|+|+++++|..++||
T Consensus        81 ~afR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~F~~fL~~L~klgil~~~d~~~~vL  160 (300)
T d2ixma1          81 KAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVF  160 (300)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTSCGGGGGGHHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTSSCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHhccCCCcccccCChHHHHHHHHHHHHHHcCCCchhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHHHHHHH
Q 016829          247 RVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKK  326 (382)
Q Consensus       247 ~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~fI~~  326 (382)
                      +||.|||++|||||.+|+|||||||||||||||||||||||||||++|++++|++|+|+++|++|+++|||++||+||++
T Consensus       161 ~vF~~Yl~l~R~Lq~~Y~LEPAGSHGvWgLDDy~fLPfi~GsaQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~fI~~  240 (300)
T d2ixma1         161 KVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITE  240 (300)
T ss_dssp             THHHHHHHHHHHHHHHTTCEESSCCGGGCSSSSCCHHHHHHHHHTTTCSSCCGGGGGCHHHHHHHGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCCCCcccccccchhhhhhHhhcCCCCCCcccccCHHHHHHHHhcchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccChhhhhccCCCChhhhhHHHHHHHHHHhcCCCcccccccccccccCC
Q 016829          327 VKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE  382 (382)
Q Consensus       327 vK~GpF~EHSpmL~dIS~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~~  382 (382)
                      +|+|||+||||||||||||++|+|||+||+|||+||||+||||||||+||+||+|+
T Consensus       241 vK~Gpf~eHSp~L~dIS~v~~W~KV~~GliKMY~~EVL~KfpVvQHf~FG~ll~f~  296 (300)
T d2ixma1         241 MKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIH  296 (300)
T ss_dssp             HCCSCHHHHCHHHHHHTTSSCHHHHHHHHHHHHHHHTTTCHHHHTTCEECSSSCSS
T ss_pred             hCCCchhhcCHHHHHHhcCCCchHHHHHHHHHHHHHHhhccchhhhhHhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999985
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ixoa1 a.268.1.1 (A:2-317) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure