Citrus Sinensis ID: 016835

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MSSKTLTLVAFAVAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALAQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHLT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccEEEEEEEEEEccccccccccccccccccccEEEEEccccccHHHHcccccccEEEEEEEEEccccHHHHccccccccccEEEccccccccEEEEEEcccccccccccEEEEEEEEEEccEEEEEEEcccccccEEEEccccccccccccccccHHHccccccccccHHHHHHcHHHHccccHHHHcccHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccccccccccccEEEcccccccccccEEEEEEEEcccEEEEEEccccEEEEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccEcEEEEEEcccccccccccccccccccEEEEEEEcccccHHHHHHHHHccEEEEEEEEcccccHHHHHHccHcccccccccccccccccEEEEEEccccccccccEEEEEEEcccccEEEEEcEEccccccEEEccccccccccccccccccccHHHHHHcccccccccHHcHcccHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccEEEEEEEcccccccccHHHHccccccEEEEEccccccccEEEEEEEEcEEEEEEEEcccEEEEEEEEEEccccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
MSSKTLTLVAFAVAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALaqpksenleltsypmtpigvvqscfstrngtprqpllvPLARACLvfdasrvppasleglgeyshCWILYVFHLNTDLeklwkepskskfkakvrvprlkgerigvfatrsphrpcpigltVAKVEAVQgntvllsgvdlvdgtpvldvkpylpycdsiqgaevpEWVMLTIASVSFAEGFFstlddcwgtagkKSLYASIDELQSLIKQVLSWdirsvsqrnrphdslvmigndkafgnpsdidenqdeetsvcrsdqgptpsedVIYHLILEGLDlsyridgnGNVIVEKVSissefpngkqnrcnySMWRDHLT
Flexible Loop (DISEMBL)
MSSKTLTLVAFAVAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAAERQGRVRAQQALRKalaqpksenleltsypmTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKlwkepskskfkakvrvprlkgerigvfatrsphrpcPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRsvsqrnrphdslvmIGNDKAFGNPSDIDENQDEETsvcrsdqgptpsEDVIYHLILEGLDLSYRIDGNGNVIVEKvsissefpngkqnrcnysmwrdhlt
Low Complexity Region (SEG)
MSSKTltlvafavaasaisastaisfYIWGKFKRLEKSLNSTLQKCAAERQGRVraqqalrkalaqPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHLT
Disordered region (IsUnstruct)
*****LTLVAFAVAASAISASTAISFYIWGKFKRLEKSLN**********************************TSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKE****KFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSV**********************************************DVIYHLILEGLDLSYRIDGNGNVIVEKVSIS*********************
Disordered Region (DISOPRED)
***KTLTLVAFAVAASAISASTAISFYIWGKFKRL******************************************PMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWK******F**KVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSE*****QNRCNYSMWRD***
Disordered Region (DISEMBL)
MSSKTLTLVAFAVAASAISASTAISFYIWGKFKRLEKSLNSTLQKCA*********************SENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDID***************PTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHLT
Disordered Region (DISPRO)
*SSKTLTLVAFAVAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALAQP*******TSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHLT
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKTLTLVAFAVAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALAQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q4V7E0	431	Nef-associated protein 1	yes	no	0.393	0.348	0.503	1e-36
Q562D6	431	Nef-associated protein 1	yes	no	0.385	0.341	0.509	1e-36
Q9BU70	441	Nef-associated protein 1	yes	no	0.380	0.328	0.484	4e-36
Q9RPT0	231	UPF0066 protein RcsF OS=P	yes	no	0.496	0.818	0.358	6e-30
O68638	240	UPF0066 protein RcsF OS=P	no	no	0.362	0.575	0.420	1e-26
P44740	239	UPF0066 protein HI_0510 O	yes	no	0.509	0.811	0.325	3e-24
P28634	235	UPF0066 protein YaeB OS=E	N/A	no	0.375	0.608	0.405	1e-22
Q9V0X6	184	UPF0066 protein PYRAB0663	yes	no	0.320	0.663	0.365	8e-17
P37752	176	UPF0066 protein in ecpA 5	N/A	no	0.225	0.488	0.44	3e-16
O29998	139	UPF0066 protein AF_0241 O	yes	no	0.349	0.956	0.348	1e-13

>sp|Q4V7E0|NAP1_RAT Nef-associated protein 1 OS=Rattus norvegicus GN=Nap1 PE=2 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 104/165 (63%), Gaps = 15/165 (9%)

Query: 65  AQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS--RVPPASLE 122
           AQP    LE  +    PIG ++SCFS + GTPRQP +   +RACL    S    P  SL 
Sbjct: 19  AQPA---LETGNLLTEPIGYLESCFSAKIGTPRQPSICSQSRACLKIRKSIFNNPEHSLM 75

Query: 123 GLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPI 182
           GL ++SH WIL+VFH N  L           +KAKV+ PRL G + GVF+TRSPHRP  I
Sbjct: 76  GLEQFSHVWILFVFHKNGHL----------NYKAKVQPPRLNGAKTGVFSTRSPHRPNAI 125

Query: 183 GLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
           GLT+AK+E V+G  V LSG+D++ GTPVLD+KPY+   DS Q  E
Sbjct: 126 GLTLAKLEKVEGGAVYLSGIDMIHGTPVLDIKPYIADYDSPQNLE 170

Hydrolyzes acyl-CoA thioesters (in vitro). Has a preference for substrates with medium chain length (C10-C14). Inactive towards substrates with C18 or C20 aliphatic chains. Its physiological substrate is not known.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q562D6|NAP1_MOUSE Nef-associated protein 1 OS=Mus musculus GN=Nap1 PE=2 SV=2

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 101/159 (63%), Gaps = 12/159 (7%)

Query: 72  LELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS--RVPPASLEGLGEYSH 129
           LE  +    PIG ++SCF  + GTPRQP +   +RACL    +    P  SL GL E+SH
Sbjct: 23  LEAGNLLTEPIGYLESCFPAKIGTPRQPSICSHSRACLKIRKNIFNNPEHSLMGLEEFSH 82

Query: 130 CWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKV 189
            WIL+VFH N  L           +KAKV+ PRL G + GVF+TRSPHRP  IGLT+AK+
Sbjct: 83  VWILFVFHKNGHL----------NYKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKL 132

Query: 190 EAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEV 228
           E V+G  V LSGVD++DGTPVLD+KPY+   DS Q   V
Sbjct: 133 EKVEGGAVYLSGVDMIDGTPVLDIKPYIADYDSPQNLSV 171

Hydrolyzes acyl-CoA thioesters (in vitro). Has a preference for substrates with medium chain length (C10-C14). Inactive towards substrates with C18 or C20 aliphatic chains. Its physiological substrate is not known.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q9BU70|NAP1_HUMAN Nef-associated protein 1 OS=Homo sapiens GN=C9orf156 PE=1 SV=2

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 103/163 (63%), Gaps = 18/163 (11%)

Query: 72  LELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACL-----VFDASRVPPASLEGLGE 126
           LE  +    P+G ++SCFS +NGTPRQP +   +RACL     +F+    P  SL GL +
Sbjct: 23  LETGNLLTEPVGYLESCFSAKNGTPRQPSICSYSRACLRIRKRIFNN---PEHSLMGLEQ 79

Query: 127 YSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTV 186
           +SH WIL+VFH N  L            KAKV+ PRL G + GVF+TRSPHRP  IGLT+
Sbjct: 80  FSHVWILFVFHKNGHL----------SCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTL 129

Query: 187 AKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVP 229
           AK+E V+G  + LSG+D++ GTPVLD+KPY+   DS Q    P
Sbjct: 130 AKLEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEP 172

Hydrolyzes acyl-CoA thioesters (in vitro). Has a preference for substrates with medium chain length (C10-C14). Inactive towards substrates with C18 or C20 aliphatic chains. Its physiological substrate is not known.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q9RPT0|RCSF1_PSEAE UPF0066 protein RcsF OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rcsF PE=3 SV=1

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 118/223 (52%), Gaps = 34/223 (15%)

Query: 76  SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPP----ASLEGLGEYSHCW 131
           ++ ++PIG ++SCF  +   PRQPLL P AR  L      +PP     +LEGL + SH W
Sbjct: 2   THSVSPIGYIRSCFMEKFAIPRQPLLAPAARGTLEL----LPPFDQVEALEGLEQVSHVW 57

Query: 132 ILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGER-IGVFATRSPHRPCPIGLTVAKVE 190
           +L++FH          +  + K + KVR PRL G R +GVFATR+ HRP  IG +V ++E
Sbjct: 58  LLFLFH----------QALEDKPRLKVRPPRLGGNRSLGVFATRATHRPNGIGQSVVRLE 107

Query: 191 AVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLD 250
             +   + LSG+DL+DGTPVLD+KPY+PY D++  A               A+     + 
Sbjct: 108 GFEAGRLWLSGIDLLDGTPVLDIKPYVPYADAVADAR-----------NGIADAPPPGIA 156

Query: 251 DCWGTAGKKSLYASIDELQ----SLIKQVLSWDIRSVSQRNRP 289
             W    ++  +     L+     LI+Q L+ D R   Q+  P
Sbjct: 157 VEWSEQARRQAHEHGQRLRQPVAELIEQCLAQDPRPAYQKPEP 199

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

>sp|O68638|RCSF2_PSEAI UPF0066 protein RcsF OS=Pseudomonas aeruginosa GN=rcsF PE=3 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 19/157 (12%)

Query: 76  SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPP----ASLEGLGEYSHCW 131
           S+ ++PIG V+SCF  +   PRQP L P A   L      +PP     ++EGL + SH W
Sbjct: 2   SHSISPIGHVRSCFKEKFAIPRQPQLAPAATGVLEL----LPPFDTGDAVEGLEQVSHVW 57

Query: 132 ILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVE 190
           ++++FH          +  + K + KVR PRL G + +GVFATR+ HRP  +G +V K+E
Sbjct: 58  LIFLFH----------QALEDKPRLKVRPPRLGGNQSMGVFATRATHRPNGLGQSVVKLE 107

Query: 191 AVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
            V+   + LSG+DL+DGTPV+D+KPY+PY D +  A 
Sbjct: 108 KVEPGRLWLSGIDLLDGTPVIDIKPYVPYADIVPDAH 144

Pseudomonas aeruginosa (taxid: 287)

>sp|P44740|Y510_HAEIN UPF0066 protein HI_0510 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0510 PE=1 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 30/224 (13%)

Query: 79  MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
           ++PI ++ + +  +   PRQP LV      +        P ++ GL ++SH W+++ F  
Sbjct: 6   LSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQF-- 63

Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLT---VAKVEAVQG 194
                    +  + K++  VR PRL G +R+GVFA+R+ HRP P+GL+   + +VE + G
Sbjct: 64  --------DQIQQGKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGLSKVELRQVECING 115

Query: 195 NTVL-LSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCW 253
           N  L L  VDLVDGTP+ D+KPY+ Y DS   A+            SFA+          
Sbjct: 116 NIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQ-----------SSFAQEKLPVKLTVE 164

Query: 254 GTAGKKSLYASIDE----LQSLIKQVLSWDIRSVSQRNRPHDSL 293
            T   KS     +E    L   I+QVL  D R   Q+ +P D +
Sbjct: 165 FTEQAKSAVKKREEKRPHLSRFIRQVLEQDPRPAYQQGKPSDRI 208

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|P28634|YAEB_ECOLI UPF0066 protein YaeB OS=Escherichia coli (strain K12) GN=yaeB PE=1 SV=2

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 15/158 (9%)

Query: 74  LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWIL 133
           ++S+    IGV++S +  +   PRQP LV  A   L   A      ++ GL  +SH WIL
Sbjct: 1   MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQADAVRGLEAFSHLWIL 60

Query: 134 YVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGE-RIGVFATRSPHRPCPIGLTVAKVEAV 192
           +VFH    +E  W        +  VR PRL G  R+GVFATRS  RP PIG+++ +++ V
Sbjct: 61  FVFH--QTMEGGW--------RPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVELKEV 110

Query: 193 --QGNTVL--LSGVDLVDGTPVLDVKPYLPYCDSIQGA 226
               ++V+  L  +DLVDGTPV+D+KPYLP+ +S+  A
Sbjct: 111 VCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDA 148

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q9V0X6|Y663_PYRAB UPF0066 protein PYRAB06630 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06630 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 23/145 (15%)

Query: 81  PIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS-RVPPASLEGLG---EYSHCWILYVF 136
           PIG++ S F      P Q      A A    + +  V P   EGL    E+SH  ++Y F
Sbjct: 11  PIGIIHSPFKEPKDVPIQ------ASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHF 64

Query: 137 HLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNT 196
           H             ++KFK  +  P +  E+ GVFATR+P RP PIG++V ++   +GN 
Sbjct: 65  H-------------RAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNI 111

Query: 197 VLLSGVDLVDGTPVLDVKPYLPYCD 221
           + +  VD++DGTP+LD+KPY+P  D
Sbjct: 112 LRIRDVDILDGTPLLDIKPYVPEFD 136

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

>sp|P37752|YAEB_EIKCO UPF0066 protein in ecpA 5'region (Fragment) OS=Eikenella corrodens PE=3 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 14/100 (14%)

Query: 127 YSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGER-IGVFATRSPHRPCPIGLT 185
           +SH W+ +VFH            + + ++  VR PRL G R +GVFATRSP RP P+GL+
Sbjct: 2   FSHIWVQFVFHGV----------AGAGWQPLVRPPRLGGNRKMGVFATRSPFRPNPLGLS 51

Query: 186 VAKVEAVQ---GNTVLLSGVDLVDGTPVLDVKPYLPYCDS 222
           + K+E ++   G  +   G DL+DGTPVLD+KPYLP+ ++
Sbjct: 52  LLKLERIETEGGVRLWCGGADLLDGTPVLDIKPYLPFVEA 91

Eikenella corrodens (taxid: 539)

>sp|O29998|Y241_ARCFU UPF0066 protein AF_0241 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0241 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 16/149 (10%)

Query: 79  MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
           + PIGVV+S F T+N  PRQ           +FD        L  +    H  +LY    
Sbjct: 3   LKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEY---ADGLHKIENLRHIIVLY---- 55

Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVL 198
                  W + + S+ K +V VP  + E  GVF TRSP RP PIGL V ++  V+ N + 
Sbjct: 56  -------WMDKA-SRDKLRV-VPPGETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLK 106

Query: 199 LSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
           +  +D +DG+PV+D+K Y P  D +   E
Sbjct: 107 VRWLDALDGSPVIDIKKYSPEIDCVNQLE 135

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
224143813	399	predicted protein [Populus trichocarpa]	0.973	0.929	0.726	1e-158
225446184	384	PREDICTED: uncharacterized protein LOC10	0.916	0.908	0.720	1e-149
363807166	394	uncharacterized protein LOC100812211 [Gl	0.973	0.941	0.685	1e-148
356562489	394	PREDICTED: UPF0066 protein HI_0510-like	0.981	0.949	0.677	1e-145
255581892	394	Protein virR, putative [Ricinus communis	0.960	0.928	0.702	1e-142
357479841	514	Nef-associated protein [Medicago truncat	0.918	0.680	0.691	1e-138
388510188	395	unknown [Medicago truncatula]	0.916	0.883	0.690	1e-138
449464336	375	PREDICTED: UPF0066 protein HI_0510-like	0.921	0.936	0.615	1e-125
18417108	351	uncharacterized protein [Arabidopsis tha	0.837	0.908	0.605	1e-123
147797441	551	hypothetical protein VITISV_029168 [Viti	0.858	0.593	0.628	1e-118

>gi|224143813|ref|XP_002325083.1| predicted protein [Populus trichocarpa] gi|222866517|gb|EEF03648.1| predicted protein [Populus trichocarpa]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 279/384 (72%), Positives = 314/384 (81%), Gaps = 13/384 (3%)

Query: 11  FAVAASAISASTA-ISFY--------IWGKFKRLEKSLNSTLQKCAAERQGRVRAQQALR 61
             VA + +SASTA IS Y        ++ K + LE SLNS +QK AAERQGR+RAQQ LR
Sbjct: 16  ITVALALLSASTAAISLYFCRKKSKVLYSKIQELEISLNSCMQKSAAERQGRIRAQQDLR 75

Query: 62  KALAQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASL 121
           K LAQPKSENLE  SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFD++RVPPASL
Sbjct: 76  KTLAQPKSENLEQASYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDSARVPPASL 135

Query: 122 EGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCP 181
           EGL EYSHCWI+YVFHLNTDL KLWK PS+SKFKAKVRVPRLKG ++GVFATRSPHRPCP
Sbjct: 136 EGLVEYSHCWIIYVFHLNTDLVKLWKHPSRSKFKAKVRVPRLKGGKMGVFATRSPHRPCP 195

Query: 182 IGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWV----MLTIA 237
           IGLTVAKVEAVQGN VLLSGVDLVDGTP+LD+KPYLPYCDSIQGA VPEWV    ML +A
Sbjct: 196 IGLTVAKVEAVQGNMVLLSGVDLVDGTPILDIKPYLPYCDSIQGAAVPEWVMVDNMLAVA 255

Query: 238 SVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIG 297
           SV+F+EGF S+L DCW TA KKSLYAS DELQ LIKQVLSWDIRS+SQRN+PHD L+  G
Sbjct: 256 SVNFSEGFSSSLSDCWETAKKKSLYASPDELQCLIKQVLSWDIRSISQRNQPHDPLIKTG 315

Query: 298 NDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKV 357
           N +A  +  D ++NQD+E S   + Q   PS DV YHLILEG+D+SYRID NGNVIVE V
Sbjct: 316 NGEAPHSALDSNQNQDQEASDNENSQVCHPSGDVTYHLILEGMDVSYRIDFNGNVIVENV 375

Query: 358 SISSEFPNGKQNRCNYSMWRDHLT 381
            +S +  NG QNR ++ MWRD L+
Sbjct: 376 VVSPDILNGNQNRSSFLMWRDELS 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446184|ref|XP_002278148.1| PREDICTED: uncharacterized protein LOC100261628 [Vitis vinifera] gi|297735319|emb|CBI17759.3| unnamed protein product [Vitis vinifera]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/354 (72%), Positives = 300/354 (84%), Gaps = 5/354 (1%)

Query: 31  KFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALAQPKSENLELTSYPMTPIGVVQSCFS 90
           K + LE SL S+L+KCAAERQGR+RAQQALRKA+ QPKS+N+E+TSYPM PI ++QSCFS
Sbjct: 31  KLRDLEISLKSSLEKCAAERQGRIRAQQALRKAIVQPKSDNMEMTSYPMRPIAIIQSCFS 90

Query: 91  TRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPS 150
           TRNGTPRQPLLVPLARACL+FD++RVPPASLEGLGEYSHCWI+YVFHLNTDLEKLWK+PS
Sbjct: 91  TRNGTPRQPLLVPLARACLIFDSARVPPASLEGLGEYSHCWIIYVFHLNTDLEKLWKDPS 150

Query: 151 KSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPV 210
           KSKFKAKVRVPRLKG R+GVFATR+PHRP PIGLTVAKVEAV GN VLLSGVDLVDGTPV
Sbjct: 151 KSKFKAKVRVPRLKGGRMGVFATRTPHRPNPIGLTVAKVEAVHGNMVLLSGVDLVDGTPV 210

Query: 211 LDVKPYLPYCDSIQGAEVPEWV----MLTIASVSFAEGFFSTLDDCWGTAGKKSLYASID 266
           LDVKPYLPYCD +QGA +P+WV    +LT+ASV+F++ F S L +CW  A KKSLYAS +
Sbjct: 211 LDVKPYLPYCDCVQGAALPKWVEDDNLLTVASVNFSDDFPSALAECWVIAEKKSLYASPN 270

Query: 267 ELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPT 326
           ELQSLIKQVLSWDIRS+SQR+RPH+SL  +G+  A    SD+D+ Q EE     S+    
Sbjct: 271 ELQSLIKQVLSWDIRSLSQRDRPHNSLFSMGSSAAVDKTSDLDDWQAEEVKR-ESEPVAL 329

Query: 327 PSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHL 380
           PSED+IYHLILEGLD+SYRID NGNV+VEK+++SS+ P   +N  NY +W D +
Sbjct: 330 PSEDIIYHLILEGLDVSYRIDCNGNVLVEKITLSSDIPKNNRNGSNYKIWSDKI 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807166|ref|NP_001242602.1| uncharacterized protein LOC100812211 [Glycine max] gi|255642295|gb|ACU21412.1| unknown [Glycine max]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/382 (68%), Positives = 300/382 (78%), Gaps = 11/382 (2%)

Query: 9   VAFAVAASAISASTAISFYIWG----KFKRLEKSLNSTLQKCAAERQGRVRAQQALRKAL 64
           V+  V  +AIS S  +    W     K + LE SL S   KCA+ERQGR+RAQ ALRK +
Sbjct: 13  VSITVTVTAISISAYVLKRKWNHLNSKIEELEASLKSCSDKCASERQGRIRAQLALRKQV 72

Query: 65  --AQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLE 122
             +QPKS+NL LTSYPM PIGVV SCFSTRNGTPRQPLLVPLARACLVF+  RVPPASLE
Sbjct: 73  TQSQPKSQNLNLTSYPMIPIGVVHSCFSTRNGTPRQPLLVPLARACLVFNTMRVPPASLE 132

Query: 123 GLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPI 182
           GL EYSHCWILYVFHLNTDLEKLWK PSKS FKAKVRVPRLKG R G+FATRSPHRPCPI
Sbjct: 133 GLAEYSHCWILYVFHLNTDLEKLWKHPSKSGFKAKVRVPRLKGGRKGLFATRSPHRPCPI 192

Query: 183 GLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVM----LTIAS 238
           GLTVAKVEAV GN +LLSGVDLVDGTPVLD+KPYLPYCDSIQ A VP W+M    L++AS
Sbjct: 193 GLTVAKVEAVLGNMILLSGVDLVDGTPVLDIKPYLPYCDSIQEAAVPNWLMEDNLLSVAS 252

Query: 239 VSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGN 298
           +SF++ F S L+DCW  A KKSLYAS  E QSLIKQVLSWDIRS+SQRNRPHD+L+   N
Sbjct: 253 ISFSDHFTSALEDCWIMAEKKSLYASTSEFQSLIKQVLSWDIRSLSQRNRPHDTLLKKEN 312

Query: 299 DKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVS 358
           D+  GN SD+DE+Q+E T V   +Q    S ++IYHLILEGLD+SYRID +G VIVEK+S
Sbjct: 313 DELLGNTSDVDEHQEETTLVREREQNALNSNEIIYHLILEGLDVSYRIDHDGYVIVEKIS 372

Query: 359 ISSEFPNGKQNRCNYSMWRDHL 380
            +S+  + K N CNY  W+D +
Sbjct: 373 -TSDVQDNKPNFCNYLTWKDRM 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562489|ref|XP_003549503.1| PREDICTED: UPF0066 protein HI_0510-like [Glycine max]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/384 (67%), Positives = 300/384 (78%), Gaps = 10/384 (2%)

Query: 3   SKTLTLVAFAVAASAISASTAISFYIWGKFKRLEKSLNSTLQKCAAERQGRVRAQQALRK 62
           S TLTL A +++A  +        ++  K + LE SL S    CA+ERQGR+RAQQALRK
Sbjct: 14  SITLTLTAVSISAYVLKRKWN---HLNSKIEELEASLKSFSDNCASERQGRIRAQQALRK 70

Query: 63  AL--AQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPAS 120
            +  +QP S+ L LTSYPM PIGVV SCFSTRNGTPRQPLLVPLARACLVF+ +RVPPAS
Sbjct: 71  EVTQSQPNSQKLNLTSYPMMPIGVVHSCFSTRNGTPRQPLLVPLARACLVFNTTRVPPAS 130

Query: 121 LEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPC 180
           LEGL EYSHCWILYVFHLNTDL+KLWK PSKS FKAKVRVPRLKG R GVFATRSPHRPC
Sbjct: 131 LEGLEEYSHCWILYVFHLNTDLDKLWKHPSKSGFKAKVRVPRLKGGRKGVFATRSPHRPC 190

Query: 181 PIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVM----LTI 236
           PIGLTVAKVEAVQGN +LLSGVDLVDGTPVLD+KPYLPYCD+IQ A VP W+M    L++
Sbjct: 191 PIGLTVAKVEAVQGNMILLSGVDLVDGTPVLDIKPYLPYCDNIQEATVPNWLMEDNLLSV 250

Query: 237 ASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMI 296
           ASVSF+E F S L + W    KKSLYAS  ELQSLIKQVLSWDIRS+SQRNRPHD+L+  
Sbjct: 251 ASVSFSEHFTSALKNIWIMVEKKSLYASPGELQSLIKQVLSWDIRSLSQRNRPHDTLLKK 310

Query: 297 GNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEK 356
            ND+  GN +D+DE+QDE T     +Q    S ++IYHLILEGLD+SYRID +G VIVEK
Sbjct: 311 ENDELLGNTADVDEHQDETTLAHEREQNALNSNEIIYHLILEGLDVSYRIDHDGYVIVEK 370

Query: 357 VSISSEFPNGKQNRCNYSMWRDHL 380
           +S +S+  + K N CNY  W+D L
Sbjct: 371 IS-TSDVQDNKPNFCNYLTWKDKL 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581892|ref|XP_002531745.1| Protein virR, putative [Ricinus communis] gi|223528615|gb|EEF30634.1| Protein virR, putative [Ricinus communis]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/386 (70%), Positives = 304/386 (78%), Gaps = 20/386 (5%)

Query: 3   SKTLTLVAFAVAASAISASTAISFYIWGK--------FKRLEKSLNSTLQKCAAERQGRV 54
           SK L      VA +A+SASTA+SFY   K         K LE SLNS+LQKCAAERQGR+
Sbjct: 10  SKWLATATITVALAALSASTAVSFYFCKKKSEILDLKVKELEISLNSSLQKCAAERQGRI 69

Query: 55  RAQQALRKAL-AQPKSENLELTS-YPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFD 112
           RAQQALR+AL A+PK+ NLE TS YPM PIG VQSCFSTRNGTPRQPLLVPLARACLVF+
Sbjct: 70  RAQQALREALTAEPKAGNLEQTSFYPMAPIGFVQSCFSTRNGTPRQPLLVPLARACLVFN 129

Query: 113 ASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFA 172
           ++RVPPASLEGL EYSHCWI+YVFHLNTDLEKLWK+PS+SKFKAKVRVPRLKG R+GVFA
Sbjct: 130 SARVPPASLEGLVEYSHCWIVYVFHLNTDLEKLWKQPSRSKFKAKVRVPRLKGGRMGVFA 189

Query: 173 TRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWV 232
           TRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLD+KPYLPYCDSIQGA VP+WV
Sbjct: 190 TRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDIKPYLPYCDSIQGAAVPKWV 249

Query: 233 ----MLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNR 288
               ML +ASVSF++GF S L DCW T  KKSLYAS DELQ LI+QVLSWDIRSVSQRN+
Sbjct: 250 MEDNMLAVASVSFSDGFSSLLADCWETVKKKSLYASSDELQCLIRQVLSWDIRSVSQRNQ 309

Query: 289 PHDSLVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDG 348
           PH      GN  +           DE+ S    DQ    SE+VIYHL+LE +++SYRI+ 
Sbjct: 310 PHKPFYKNGNVNSSHGSLHSACKHDEDISSHEDDQ-VFHSENVIYHLVLERINVSYRINN 368

Query: 349 NGNVIVEKVSISSE-----FPNGKQN 369
           NGNVIVE+ +IS+E      PNG QN
Sbjct: 369 NGNVIVEEATISTETETEKTPNGNQN 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479841|ref|XP_003610206.1| Nef-associated protein [Medicago truncatula] gi|355511261|gb|AES92403.1| Nef-associated protein [Medicago truncatula]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/356 (69%), Positives = 279/356 (78%), Gaps = 6/356 (1%)

Query: 31  KFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALAQPKSENLELTSYPMTPIGVVQSCFS 90
           K   LE SL S    CA+ERQGR+RAQQ LRK L QPKSENL LT YPM PIG + SCFS
Sbjct: 41  KIHELELSLKSCSDNCASERQGRIRAQQMLRKQLTQPKSENLNLTYYPMIPIGTIHSCFS 100

Query: 91  TRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPS 150
           TRNGTPRQPLLVPLARACLVF+ SRVPPASLEGL EYSHCWI+YVFHLNT+LEKLWK PS
Sbjct: 101 TRNGTPRQPLLVPLARACLVFNTSRVPPASLEGLAEYSHCWIIYVFHLNTNLEKLWKHPS 160

Query: 151 KSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPV 210
           +S FKAKVRVPRLKG +IGVF TRSPHRPCPIGLTVAKVEAVQGN +LLSGVDLVDGTPV
Sbjct: 161 QSGFKAKVRVPRLKGGKIGVFGTRSPHRPCPIGLTVAKVEAVQGNMILLSGVDLVDGTPV 220

Query: 211 LDVKPYLPYCDSIQGAEVPEWVM----LTIASVSFAEGFFSTLDDCWGTAGKKSLYASID 266
           LDVKPYLPYCDSIQ A VP W+M    L++ASVSF+E F S+L+ CW TA KKSLYAS  
Sbjct: 221 LDVKPYLPYCDSIQEAAVPNWLMEDNLLSVASVSFSEEFISSLESCWITAEKKSLYASPG 280

Query: 267 ELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRS-DQGP 325
           E QSL+ QVLSWDIRS+SQRNRP D++      +   + SD+D+    ET++    +Q  
Sbjct: 281 EFQSLVMQVLSWDIRSLSQRNRPRDAIRKKEKGQLLCDTSDVDDEHLGETAIVHEREQNS 340

Query: 326 TPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHLT 381
             S +V+YHLILEGLD+SYRID +GNVIVEKVS S+   N K +  NY  W+D L 
Sbjct: 341 LNSMEVVYHLILEGLDVSYRIDHDGNVIVEKVSTSAVLDN-KLDSYNYLTWKDKLN 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510188|gb|AFK43160.1| unknown [Medicago truncatula]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/355 (69%), Positives = 278/355 (78%), Gaps = 6/355 (1%)

Query: 31  KFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALAQPKSENLELTSYPMTPIGVVQSCFS 90
           K   LE SL S    CA+ERQGR+ AQQ LRK L QPKSENL LT YPM PIG + SCFS
Sbjct: 41  KIHELELSLKSCSDNCASERQGRIGAQQMLRKQLTQPKSENLNLTYYPMIPIGTIHSCFS 100

Query: 91  TRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPS 150
           TRNGTPRQPLLVPLARACLVF+ SRVPPASLEGL EYSHCWI+YVFHLNT+LEKLWK PS
Sbjct: 101 TRNGTPRQPLLVPLARACLVFNTSRVPPASLEGLAEYSHCWIIYVFHLNTNLEKLWKHPS 160

Query: 151 KSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPV 210
           +S FKAKVRVPRLKG +IGVF TRSPHRPCPIGLTVAKVEAVQGN +LLSGVDLVDGTPV
Sbjct: 161 QSGFKAKVRVPRLKGGKIGVFGTRSPHRPCPIGLTVAKVEAVQGNMILLSGVDLVDGTPV 220

Query: 211 LDVKPYLPYCDSIQGAEVPEWVM----LTIASVSFAEGFFSTLDDCWGTAGKKSLYASID 266
           LDVKPYLPYCDSIQ A VP W+M    L++ASVSF+E F S+L+ CW TA KKSLYAS  
Sbjct: 221 LDVKPYLPYCDSIQEAAVPNWLMEDNLLSVASVSFSEEFISSLESCWITAEKKSLYASPG 280

Query: 267 ELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRS-DQGP 325
           E QSL+ QVLSWDIRS+SQRNRP D++      +   + SD+D+    ET++    +Q  
Sbjct: 281 EFQSLVMQVLSWDIRSLSQRNRPRDAIRKKEKGQLLCDTSDVDDEHLGETAIVHEREQNS 340

Query: 326 TPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHL 380
             S +V+YHLILEGLD+SYRID +GNVIVEKVS S+   N K +  NY  W+D L
Sbjct: 341 LNSMEVVYHLILEGLDVSYRIDHDGNVIVEKVSTSAVLDN-KLDSYNYLTWKDKL 394

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464336|ref|XP_004149885.1| PREDICTED: UPF0066 protein HI_0510-like [Cucumis sativus] gi|449508000|ref|XP_004163189.1| PREDICTED: UPF0066 protein HI_0510-like [Cucumis sativus]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/372 (61%), Positives = 287/372 (77%), Gaps = 21/372 (5%)

Query: 10  AFAVAASAISASTAISFYI--------WGKFKRLEKSLNSTLQKCAAERQGRVRAQQALR 61
           A +V  + ISAS  IS Y+          K ++LE SL ++L+K AAERQGR+RAQQALR
Sbjct: 13  AMSVTLAFISASAIISLYLVTKKSRELGTKVRQLEASLAASLKKTAAERQGRIRAQQALR 72

Query: 62  KALAQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASL 121
           KA+A+PKS++++ TSYPMTPIG +QS F+TRNGTPRQ LLVPLARA LVF A R+PPAS+
Sbjct: 73  KAVAEPKSDSVKCTSYPMTPIGTIQSSFTTRNGTPRQSLLVPLARARLVFSA-RIPPASI 131

Query: 122 EGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCP 181
           EGLGEYSHCW++YVFHLNTDL+KLWK+PSKSKFKAKVRVPRLKGER+GVFATRSPHRPCP
Sbjct: 132 EGLGEYSHCWVIYVFHLNTDLDKLWKDPSKSKFKAKVRVPRLKGERVGVFATRSPHRPCP 191

Query: 182 IGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVM----LTIA 237
           IGLTVAKVEAVQG+ +LLSG DLVDGTPVLDVKPYLPYCDS+Q A VP+W++    LT+A
Sbjct: 192 IGLTVAKVEAVQGHEILLSGADLVDGTPVLDVKPYLPYCDSVQNATVPKWLLGDNVLTVA 251

Query: 238 SVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIG 297
           S+ F+E F STL  CW    KKSLYAS DEL++ +KQVLSWDIRSVSQR+RPH S +   
Sbjct: 252 SICFSEEFTSTLSKCWPLTEKKSLYASEDELKNFVKQVLSWDIRSVSQRSRPHCSHIKTD 311

Query: 298 NDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKV 357
           +D +  +   +++     +         + S+  IYHL+++GLD+SY I  +G+V+V+KV
Sbjct: 312 SDDSSDSDGHLNDKVSSSSQ--------SSSKSTIYHLLVDGLDVSYTIGCHGDVVVDKV 363

Query: 358 SISSEFPNGKQN 369
            ++S     + N
Sbjct: 364 ELASSSSRTRSN 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417108|ref|NP_567793.1| uncharacterized protein [Arabidopsis thaliana] gi|44917569|gb|AAS49109.1| At4g28020 [Arabidopsis thaliana] gi|110741672|dbj|BAE98782.1| hypothetical protein [Arabidopsis thaliana] gi|332660021|gb|AEE85421.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/365 (60%), Positives = 261/365 (71%), Gaps = 46/365 (12%)

Query: 7   TLVAFAVAASAISASTAISFYIW--------GKFKRLEKSLNSTLQKCAAERQGRVRAQQ 58
           T  A A   + +S S A S Y W         + K  EKSL STL+K A+ER+GRV+AQQ
Sbjct: 11  TTAALAFTLAVVSVSAAFSLYRWRRREEDLENRIKEFEKSLGSTLEKSASERKGRVKAQQ 70

Query: 59  ALRKALAQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPP 118
           ALR+ALAQ +S +L  T YPM PIG +QSCFSTRNGTPRQPLLV LARACL+FD + VPP
Sbjct: 71  ALREALAQTESHDLHSTIYPMRPIGTIQSCFSTRNGTPRQPLLVSLARACLIFDPALVPP 130

Query: 119 ASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHR 178
           ASLEGL EYSHCWILYVFHLNTD+EKLW++PS+SK KAKVRVPRL GER GVFATRSPHR
Sbjct: 131 ASLEGLEEYSHCWILYVFHLNTDIEKLWRKPSQSKLKAKVRVPRLNGERKGVFATRSPHR 190

Query: 179 PCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVM----L 234
           PCPIGLTVAKVE +Q + VLLSGVDLVDGTPVLD+KPYLPY DSIQGA VP WV     L
Sbjct: 191 PCPIGLTVAKVEEIQKDKVLLSGVDLVDGTPVLDIKPYLPYSDSIQGASVPNWVKEDCSL 250

Query: 235 TIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLV 294
            +ASV+F++ F S++  CW    KKSLY+S DE +SLI QVLSWDIRS+SQRN+P D+L 
Sbjct: 251 AVASVTFSDTFSSSITSCWKLIEKKSLYSSADEFRSLITQVLSWDIRSMSQRNKPQDTL- 309

Query: 295 MIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIV 354
                                             E+++YHL+LEGLD+SY ID   N++V
Sbjct: 310 ---------------------------------DEEIVYHLVLEGLDVSYMIDNESNILV 336

Query: 355 EKVSI 359
           + VS+
Sbjct: 337 QDVSL 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797441|emb|CAN66858.1| hypothetical protein VITISV_029168 [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/350 (62%), Positives = 263/350 (75%), Gaps = 23/350 (6%)

Query: 45  KCAAERQGRVRAQQALRKALAQPKSENLELTSYPMTPIGVVQS---CFSTRNGTPRQPLL 101
           + A  RQ R+  Q A           NLE+  +       V+     ++ RNGTPRQPLL
Sbjct: 65  RVARRRQARLEGQAA--------SELNLEMEVFFHFLDSKVRPSSLAYNPRNGTPRQPLL 116

Query: 102 VPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAK---- 157
           VPLARACL+FD++RVPPASLEGLGEYSHCWI+YVFHLNTDLEKLWK+PSKSKFKAK    
Sbjct: 117 VPLARACLIFDSARVPPASLEGLGEYSHCWIIYVFHLNTDLEKLWKDPSKSKFKAKVDGT 176

Query: 158 ---VRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVK 214
              VRVPRLKG R+GVFATR+PHRP PIGLTVAKVEAV GN VLLSGVDLVDGTPVLDVK
Sbjct: 177 PVLVRVPRLKGGRMGVFATRTPHRPNPIGLTVAKVEAVHGNMVLLSGVDLVDGTPVLDVK 236

Query: 215 PYLPYCDSIQGAEVPEWV----MLTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQS 270
           PYLPYCD +QGA +P+WV    +LT+ASV+F++ F S L +CW  A KKSLYAS +ELQS
Sbjct: 237 PYLPYCDCVQGAALPKWVEDDNLLTVASVNFSDDFPSALAECWVIAEKKSLYASPNELQS 296

Query: 271 LIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSED 330
           LIKQVLSWDIRS+SQR+RPH+SL  +G+  A    SD+++ Q EE     S+    PSED
Sbjct: 297 LIKQVLSWDIRSLSQRDRPHNSLFSMGSSAAVDKTSDLNDWQAEEVQR-ESEPVALPSED 355

Query: 331 VIYHLILEGLDLSYRIDGNGNVIVEKVSISSEFPNGKQNRCNYSMWRDHL 380
           +IYHLILEGLD+SYRID NGNV+VEK+++SS+ P   +N  NY +W D +
Sbjct: 356 IIYHLILEGLDVSYRIDCNGNVLVEKITLSSDIPKNNRNGSNYKIWSDKI 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2132952	351	AT4G28020 "AT4G28020" [Arabido	0.690	0.749	0.692	9.2e-107
MGI|MGI:1922003	431	5830415F09Rik "RIKEN cDNA 5830	0.385	0.341	0.509	1.7e-38
RGD|1305420	431	RGD1305420 "similar to Nef ass	0.383	0.338	0.506	1.2e-37
UNIPROTKB|Q9BU70	441	C9orf156 "Nef-associated prote	0.385	0.333	0.490	3.6e-34
UNIPROTKB|Q87XZ7	239	PSPTO_4023 "Uncharacterized pr	0.535	0.853	0.409	6.2e-30
UNIPROTKB|Q48FA3	230	PSPPH_3796 "Uncharacterized pr	0.517	0.856	0.404	7.1e-29
ZFIN|ZDB-GENE-051023-15	302	zgc:123172 "zgc:123172" [Danio	0.178	0.225	0.632	9.1e-25
UNIPROTKB|Q9KTM6	231	VC_0876 "Putative uncharacteri	0.522	0.861	0.343	1.6e-24
TIGR_CMR|VC_0876	231	VC_0876 "conserved hypothetica	0.522	0.861	0.343	1.6e-24
UNIPROTKB|Q8ECJ1	244	yaeB "Putative methyltransfera	0.527	0.823	0.354	1.1e-23

TAIR|locus:2132952 AT4G28020 "AT4G28020" [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 9.2e-107, Sum P(2) = 9.2e-107
 Identities = 185/267 (69%), Positives = 212/267 (79%)

Query:    31 KFKRLEKSLNSTLQKCAAERQGRVXXXXXXXXXXXXPKSENLELTSYPMTPIGVVQSCFS 90
             + K  EKSL STL+K A+ER+GRV             +S +L  T YPM PIG +QSCFS
Sbjct:    43 RIKEFEKSLGSTLEKSASERKGRVKAQQALREALAQTESHDLHSTIYPMRPIGTIQSCFS 102

Query:    91 TRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPS 150
             TRNGTPRQPLLV LARACL+FD + VPPASLEGL EYSHCWILYVFHLNTD+EKLW++PS
Sbjct:   103 TRNGTPRQPLLVSLARACLIFDPALVPPASLEGLEEYSHCWILYVFHLNTDIEKLWRKPS 162

Query:   151 KSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPV 210
             +SK KAKVRVPRL GER GVFATRSPHRPCPIGLTVAKVE +Q + VLLSGVDLVDGTPV
Sbjct:   163 QSKLKAKVRVPRLNGERKGVFATRSPHRPCPIGLTVAKVEEIQKDKVLLSGVDLVDGTPV 222

Query:   211 LDVKPYLPYCDSIQGAEVPEWVM----LTIASVSFAEGFFSTLDDCWGTAGKKSLYASID 266
             LD+KPYLPY DSIQGA VP WV     L +ASV+F++ F S++  CW    KKSLY+S D
Sbjct:   223 LDIKPYLPYSDSIQGASVPNWVKEDCSLAVASVTFSDTFSSSITSCWKLIEKKSLYSSAD 282

Query:   267 ELQSLIKQVLSWDIRSVSQRNRPHDSL 293
             E +SLI QVLSWDIRS+SQRN+P D+L
Sbjct:   283 EFRSLITQVLSWDIRSMSQRNKPQDTL 309

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

MGI|MGI:1922003 5830415F09Rik "RIKEN cDNA 5830415F09 gene" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 81/159 (50%), Positives = 101/159 (63%)

Query:    72 LELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS--RVPPASLEGLGEYSH 129
             LE  +    PIG ++SCF  + GTPRQP +   +RACL    +    P  SL GL E+SH
Sbjct:    23 LEAGNLLTEPIGYLESCFPAKIGTPRQPSICSHSRACLKIRKNIFNNPEHSLMGLEEFSH 82

Query:   130 CWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKV 189
              WIL+VFH N  L           +KAKV+ PRL G + GVF+TRSPHRP  IGLT+AK+
Sbjct:    83 VWILFVFHKNGHLN----------YKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKL 132

Query:   190 EAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEV 228
             E V+G  V LSGVD++DGTPVLD+KPY+   DS Q   V
Sbjct:   133 EKVEGGAVYLSGVDMIDGTPVLDIKPYIADYDSPQNLSV 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

RGD|1305420 RGD1305420 "similar to Nef associated protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 371 (135.7 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 80/158 (50%), Positives = 101/158 (63%)

Query:    72 LELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS--RVPPASLEGLGEYSH 129
             LE  +    PIG ++SCFS + GTPRQP +   +RACL    S    P  SL GL ++SH
Sbjct:    23 LETGNLLTEPIGYLESCFSAKIGTPRQPSICSQSRACLKIRKSIFNNPEHSLMGLEQFSH 82

Query:   130 CWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKV 189
              WIL+VFH N  L           +KAKV+ PRL G + GVF+TRSPHRP  IGLT+AK+
Sbjct:    83 VWILFVFHKNGHLN----------YKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKL 132

Query:   190 EAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
             E V+G  V LSG+D++ GTPVLD+KPY+   DS Q  E
Sbjct:   133 EKVEGGAVYLSGIDMIHGTPVLDIKPYIADYDSPQNLE 170

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9BU70 C9orf156 "Nef-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 79/161 (49%), Positives = 102/161 (63%)

Query:    72 LELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRV---PPASLEGLGEYS 128
             LE  +    P+G ++SCFS +NGTPRQP +   +RACL     R+   P  SL GL ++S
Sbjct:    23 LETGNLLTEPVGYLESCFSAKNGTPRQPSICSYSRACLRI-RKRIFNNPEHSLMGLEQFS 81

Query:   129 HCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAK 188
             H WIL+VFH N  L            KAKV+ PRL G + GVF+TRSPHRP  IGLT+AK
Sbjct:    82 HVWILFVFHKNGHLS----------CKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAK 131

Query:   189 VEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVP 229
             +E V+G  + LSG+D++ GTPVLD+KPY+   DS Q    P
Sbjct:   132 LEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEP 172

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

UNIPROTKB|Q87XZ7 PSPTO_4023 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 91/222 (40%), Positives = 123/222 (55%)

Query:    69 SENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYS 128
             SE  +  SY ++P+G V+SCF  +   PRQP L P AR  L   A      +++GL + S
Sbjct:     4 SEPADTMSYNVSPVGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGEAVQGLEQVS 63

Query:   129 HCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGER-IGVFATRSPHRPCPIGLTVA 187
             H W+L++FHL   LE         K + KVR PRL G + +GVFATR+ HRP  IG +V 
Sbjct:    64 HVWLLFLFHLA--LE--------DKPRLKVRPPRLGGNQSMGVFATRATHRPNGIGQSVV 113

Query:   188 KVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFS 247
             K++ V+   + LSG+DL+DGTPVLD+KPY+PY D I  AE        IAS + A     
Sbjct:   114 KLDKVEAGRLWLSGIDLLDGTPVLDIKPYVPYADVI--AEATN----QIASSAPALIPVQ 167

Query:   248 TLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRP 289
               D     A + +L  S + L  LI+Q L+ D R   Q   P
Sbjct:   168 WQDAALLQAREHALRLS-EPLVELIEQCLAQDPRPAYQLPAP 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48FA3 PSPPH_3796 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 87/215 (40%), Positives = 120/215 (55%)

Query:    76 SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYV 135
             SY ++P+G V+SCF  +   PRQP L P AR  L   A      +++GL   SH W+L++
Sbjct:     2 SYNVSPVGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGEAVQGLEAVSHVWLLFL 61

Query:   136 FHLNTDLEKLWKEPSKSKFKAKVRVPRLKGER-IGVFATRSPHRPCPIGLTVAKVEAVQG 194
             FH+   LE         K + KVR PRL G + +GVFATR+ HRP  IG +V +++ V+ 
Sbjct:    62 FHMA--LE--------DKPRLKVRPPRLGGNQSMGVFATRATHRPNGIGQSVVRLDKVEA 111

Query:   195 NTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCWG 254
               + LSG+DL+DGTPVLD+KPY+PY D+I  AE        IAS + A       D    
Sbjct:   112 GRLWLSGIDLLDGTPVLDIKPYVPYADAI--AEATNH----IASAAPALIPVQWQDAALL 165

Query:   255 TAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRP 289
              A + +L  S + L  LI+Q L+ D R   Q   P
Sbjct:   166 QAREHALRLS-EPLVELIEQCLAQDPRPAYQLPTP 199

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-051023-15 zgc:123172 "zgc:123172" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
 Identities = 43/68 (63%), Positives = 57/68 (83%)

Query:   155 KAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVK 214
             KAKV  PRL GE++GV++TRSPHRP  +GLT+AK+E + G+T+ LSGVD++ GTPVLD+K
Sbjct:     4 KAKVEPPRLNGEKVGVYSTRSPHRPNALGLTLAKLEGITGDTLHLSGVDVIAGTPVLDIK 63

Query:   215 PYLPYCDS 222
             PY+P  DS
Sbjct:    64 PYIPDYDS 71

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9KTM6 VC_0876 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 78/227 (34%), Positives = 123/227 (54%)

Query:    77 YPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVF 136
             YP+ PI +++S +  +   PRQP LVP A A +          S+ G+ ++SH W+L++F
Sbjct:     2 YPIEPIAIIESPYQEKFAVPRQPRLVPSATARVKLLGECNCAESIRGIEQFSHVWLLFLF 61

Query:   137 HLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAV--Q 193
               N  L   WK P+       VR PRL G ER+GVFA+R+  RP  IG++  +++ V  +
Sbjct:    62 DQN--LAAGWK-PT-------VRPPRLGGNERVGVFASRATFRPNGIGMSAVELKGVSKE 111

Query:   194 GNTVLLS--GVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDD 251
             G+   L    VDLV+GTP++D+KPY+PY DSI           T A   +AE     +  
Sbjct:   112 GDQYYLELGSVDLVNGTPIIDIKPYIPYSDSI-----------TDAQGGYAEQEPQRMAV 160

Query:   252 CWGTAGKKSLYASIDEL--QSLIKQVLSWDIRSVSQRNRPHDSLVMI 296
              +  A ++ L A  +    Q++I++VL+ D R   +++R  D L  +
Sbjct:   161 TFSDAARQMLQAHPEGKIRQAVIREVLAQDPRPAYKKHRADDKLYAV 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0876 VC_0876 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 78/227 (34%), Positives = 123/227 (54%)

Query:    77 YPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVF 136
             YP+ PI +++S +  +   PRQP LVP A A +          S+ G+ ++SH W+L++F
Sbjct:     2 YPIEPIAIIESPYQEKFAVPRQPRLVPSATARVKLLGECNCAESIRGIEQFSHVWLLFLF 61

Query:   137 HLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAV--Q 193
               N  L   WK P+       VR PRL G ER+GVFA+R+  RP  IG++  +++ V  +
Sbjct:    62 DQN--LAAGWK-PT-------VRPPRLGGNERVGVFASRATFRPNGIGMSAVELKGVSKE 111

Query:   194 GNTVLLS--GVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDD 251
             G+   L    VDLV+GTP++D+KPY+PY DSI           T A   +AE     +  
Sbjct:   112 GDQYYLELGSVDLVNGTPIIDIKPYIPYSDSI-----------TDAQGGYAEQEPQRMAV 160

Query:   252 CWGTAGKKSLYASIDEL--QSLIKQVLSWDIRSVSQRNRPHDSLVMI 296
              +  A ++ L A  +    Q++I++VL+ D R   +++R  D L  +
Sbjct:   161 TFSDAARQMLQAHPEGKIRQAVIREVLAQDPRPAYKKHRADDKLYAV 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ECJ1 yaeB "Putative methyltransferase YaeB" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 79/223 (35%), Positives = 115/223 (51%)

Query:    79 MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
             +T +   ++ +  + G PRQP LV  AR  +  +       ++ G+ +YSH W+L+ FH 
Sbjct:     7 ITAVATCRTPYKQKFGIPRQPGLVK-ARGYVELEGHVNHLDAVRGIEQYSHLWLLFCFHE 65

Query:   139 NTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAV---QG 194
             N  L + WK          VR PRL G E++GVFATRS  RP  IG +V K+  V   +G
Sbjct:    66 N--LAQGWK--------TTVRPPRLGGNEKLGVFATRSTFRPNGIGQSVVKLHGVVQRKG 115

Query:   195 NTVL-LSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCW 253
                L +SG+DLVDGTP++D+KPY+P+ DSI+GA      M   A    +  F    D+  
Sbjct:   116 KVCLEISGMDLVDGTPIIDIKPYIPFSDSIEGAVGG---MAQEAPKLISVEFSDLADEQI 172

Query:   254 GTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMI 296
              T  K+  Y    +L  LI  VL  D R   ++ +    L  +
Sbjct:   173 NTYSKQEAYT---DLAVLICGVLGQDPRPAYKKAKDDPKLYQV 212

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031469001 SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (409 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
pfam01980	118	pfam01980, UPF0066, Uncharacterized protein family	2e-53
cd09281	124	cd09281, UPF0066, Escherichia coli YaeB and relate	3e-51
COG1720	156	COG1720, COG1720, Uncharacterized conserved protei	5e-47
TIGR00104	142	TIGR00104, YaeB_AF0241, putative methyltransferase	3e-33

>gnl|CDD|216826 pfam01980, UPF0066, Uncharacterized protein family UPF0066

 Score =  172 bits (438), Expect = 2e-53
 Identities = 61/133 (45%), Positives = 81/133 (60%), Gaps = 16/133 (12%)

Query: 91  TRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPS 150
            + GTPRQP LV  A   +           LEGL E+SH W+LY FH             
Sbjct: 1   EKFGTPRQPGLVSGAEGEIEIFPEYAE--GLEGLEEFSHLWVLYWFH------------- 45

Query: 151 KSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTP 209
           +++    VR PRL G  ++GVFATRSPHRP PIGL+V ++  ++GN + + G+D +DGTP
Sbjct: 46  RARRDPLVRPPRLGGNPKVGVFATRSPHRPNPIGLSVVRLLKIEGNRLYVRGLDALDGTP 105

Query: 210 VLDVKPYLPYCDS 222
           VLD+KPY+PY DS
Sbjct: 106 VLDIKPYIPYFDS 118

Length = 118

>gnl|CDD|187753 cd09281, UPF0066, Escherichia coli YaeB and related proteins

 Score =  166 bits (424), Expect = 3e-51
 Identities = 60/136 (44%), Positives = 77/136 (56%), Gaps = 12/136 (8%)

Query: 81  PIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNT 140
           PIGVV+S F  R G P Q  LV    + +  D        L+GL E+SH W+LY FH   
Sbjct: 1   PIGVVRSPFKERFGAP-QQGLVGGVESEIEIDPEYAE--GLKGLEEFSHIWVLYWFHKAD 57

Query: 141 DLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLS 200
             E                 PR    ++GVFATRSPHRP PIGL+V ++  V+GN + +S
Sbjct: 58  REELRVT---------VRPPPRGDNPKVGVFATRSPHRPNPIGLSVVRLLKVEGNRLHVS 108

Query: 201 GVDLVDGTPVLDVKPY 216
           G+D +DGTPVLD+KPY
Sbjct: 109 GLDALDGTPVLDIKPY 124

Uncharacterized protein family UPF0066. This domain includes Escherichia coli YeaB, Archeoglobus fulgidus AF0241, and Agrobacterium tumefaciens VirR. Proteins with this domain are probable S-adenosylmethionine-dependent methyltransferases but they have not been functionally characterized and the substrate is unknown. Length = 124

>gnl|CDD|224634 COG1720, COG1720, Uncharacterized conserved protein [Function unknown]

 Score =  157 bits (398), Expect = 5e-47
 Identities = 66/156 (42%), Positives = 87/156 (55%), Gaps = 18/156 (11%)

Query: 79  MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
           + PIGV++S +  +   PRQP LV  A   +           L GL E+SH  +L+ FH 
Sbjct: 7   LKPIGVIRSPYKEKFDVPRQPGLVSSAEGEIELLPEYRE--GLRGLEEFSHVIVLFWFH- 63

Query: 139 NTDLEKLWKEPSKSKFKA-KVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQGNT 196
                       K+      VR PRL G  R+GVFATRSP RP PIGL+V ++  V+GN 
Sbjct: 64  ------------KADRWVLTVRPPRLGGNPRVGVFATRSPFRPNPIGLSVVELLEVEGNR 111

Query: 197 VLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWV 232
           + + G+D +DGTPVLD+KPYLP+ DS   A  P W 
Sbjct: 112 LYVRGLDALDGTPVLDIKPYLPFADSPPEAR-PGWA 146

Length = 156

>gnl|CDD|129210 TIGR00104, YaeB_AF0241, putative methyltransferase, YaeB/AF_0241 family

 Score =  120 bits (303), Expect = 3e-33
 Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 14/153 (9%)

Query: 76  SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYV 135
              + PIGV++S +  +   PRQ           +F        ++ GL ++SH  +LY 
Sbjct: 2   DLQLKPIGVIRSPYKEKFDAPRQGRFSDEVGEIEIFPEY---ADAVRGLEQFSHLIVLYW 58

Query: 136 FHLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQG 194
           F              + K++  V  PRL G +R GVFATRSPHRP PIGL+V ++  V+ 
Sbjct: 59  FDQA----------QRGKWQLTVVPPRLGGNQRRGVFATRSPHRPNPIGLSVVELLEVEC 108

Query: 195 NTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
           N + + G+D +DGTPV+D+KPY  Y DS+  A+
Sbjct: 109 NILKVGGLDALDGTPVIDIKPYSEYIDSVPNAQ 141

This protein has been characterized by crystallography in complex with S-Adenosylmethionine, making it a probable S-adenosylmethionine-dependent methyltransferase. The substrate is unknown [Unknown function, Enzymes of unknown specificity]. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
COG1720	156	Uncharacterized conserved protein [Function unknow	100.0
TIGR00104	142	YaeB_AF0241 probable methyltransferase, YaeB/AF_02	100.0
PF01980	120	UPF0066: Uncharacterised protein family UPF0066; I	100.0
KOG2942	361	consensus Uncharacterized conserved protein [Funct	100.0
KOG2942	361	consensus Uncharacterized conserved protein [Funct	99.98

>COG1720 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9e-57  Score=401.14  Aligned_cols=146  Identities=45%  Similarity=0.773  Sum_probs=136.7

Q ss_pred             CCccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835           74 LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK  153 (381)
Q Consensus        74 ~~~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~  153 (381)
                      +.+++++|||+|+|||++++.+|||++++..+.+.|+|.++|.  +||+|||+|||+|||||||++.            .
T Consensus         2 ~~~~~~~pIG~i~sp~~~~~~~p~q~~~~~~~~~~I~l~pey~--egL~GLe~fshv~vl~~fh~a~------------~   67 (156)
T COG1720           2 PMSICLKPIGVIRSPYKEKFDVPRQPGLVSSAEGEIELLPEYR--EGLRGLEEFSHVIVLFWFHKAD------------R   67 (156)
T ss_pred             CCceeeeEeEeeccCCCCcccccccccccccceEEEEECHHHh--hhhhccccCCEEEEEEEEecCC------------C
Confidence            3467899999999999999999999999999999999999994  9999999999999999999974            2


Q ss_pred             cceeeccCCCCC-ceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCCCcchhhh
Q 016835          154 FKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWV  232 (381)
Q Consensus       154 ~k~~VRpPRl~G-~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~p~W~  232 (381)
                      +..+|||||+++ +++|||||||||||||||||+|||++|++++|+|+|+||+|||||||||||++++|+.+++. ++|.
T Consensus        68 ~~l~Vrppr~~~~~~~GVFATRSp~RPNPIGlsvvel~~v~~~~L~v~glDa~dGTPVlDIKPy~~~~d~~~~a~-~~~~  146 (156)
T COG1720          68 WVLTVRPPRLGGNPRVGVFATRSPFRPNPIGLSVVELLEVEGNRLYVRGLDALDGTPVLDIKPYLPFADSPPEAR-PGWA  146 (156)
T ss_pred             ccceEeCCCCCCCcceeEEeccCCCCCCCceEEEEEEEEEecCEEEEeEecccCCCcEeeeeccCccccCccccc-hhhh
Confidence            578999999887 78999999999999999999999999999999999999999999999999999999988876 6898


Q ss_pred             hc
Q 016835          233 ML  234 (381)
Q Consensus       233 ~~  234 (381)
                      +.
T Consensus       147 e~  148 (156)
T COG1720         147 EE  148 (156)
T ss_pred             hh
Confidence            74

>TIGR00104 YaeB_AF0241 probable methyltransferase, YaeB/AF_0241 family

Probab=100.00  E-value=3.8e-56  Score=393.43  Aligned_cols=138  Identities=40%  Similarity=0.683  Sum_probs=127.9

Q ss_pred             cceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccccce
Q 016835           77 YPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKA  156 (381)
Q Consensus        77 ~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~~k~  156 (381)
                      |+++|||+|||||++++++|||+. .....++|+|+++|  .+||+|||+|||||||||||++..          ..++.
T Consensus         3 ~~~~pIG~v~s~~~~~~~~Prq~~-~~~~~~~I~i~~~~--~~~L~gLe~~shi~vl~~fh~~~~----------~~~~~   69 (142)
T TIGR00104         3 LQLKPIGVIRSPYKEKFDAPRQGR-FSDEVGEIEIFPEY--ADAVRGLEQFSHLIVLYWFDQAQR----------GKWQL   69 (142)
T ss_pred             eeeEEEEEEeCCCCCccCCCCCCC-CCCccEEEEECccH--HHHhhccccCCEEEEEEEEECCCC----------ccceE
Confidence            889999999999999999999954 67788999999998  689999999999999999999853          34578


Q ss_pred             eeccCCCCC-ceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCCCc
Q 016835          157 KVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAE  227 (381)
Q Consensus       157 ~VRpPRl~G-~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~  227 (381)
                      +|+|||+++ .++|||||||||||||||||+|||++|++++|+|+|+||+|||||||||||+|++|++++|+
T Consensus        70 ~v~pp~~~~~~~~GVFatRSP~RPNPIGls~v~l~~v~~~~L~V~GlDa~DGTPVLDIKPy~~~~D~~~~a~  141 (142)
T TIGR00104        70 TVVPPRLGGNQRRGVFATRSPHRPNPIGLSVVELLEVECNILKVGGLDALDGTPVIDIKPYSEYIDSVPNAQ  141 (142)
T ss_pred             EeCCccCCCCCceEEecccCCCCCCCcEeEEEEEeEEECCEEEEeeecccCCCcEeeeeecccccCCccccc
Confidence            899998765 78999999999999999999999999999999999999999999999999999999998875

This protein has been characterized by crystallography in complex with S-Adenosylmethionine, making it a probable S-adenosylmethionine-dependent methyltransferase. The substrate is unknown.

>PF01980 UPF0066: Uncharacterised protein family UPF0066; InterPro: IPR001378 This family contains a number of proteins of archaea and bacterial origin

Probab=100.00  E-value=2e-50  Score=348.26  Aligned_cols=119  Identities=48%  Similarity=0.838  Sum_probs=95.8

Q ss_pred             CCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccccceeeccCCCCC-ceee
Q 016835           91 TRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIG  169 (381)
Q Consensus        91 ~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~~k~~VRpPRl~G-~kvG  169 (381)
                      ||+|+|||+..+....++|+|+++|  .+||+|||+|||||||||||++.+           ....++++||.++ .++|
T Consensus         1 ek~~~Prq~~~~~~~~~~Iei~~~y--~~~L~gLe~~shi~vl~~fh~~~~-----------~~~~l~~~Pr~~~~~~~G   67 (120)
T PF01980_consen    1 EKNGTPRQGVLASDSEAEIEIFPEY--EEGLKGLEEFSHIWVLYWFHKADT-----------DRNLLVRPPRGDGNPKVG   67 (120)
T ss_dssp             SCGGS-SSCCT-TT-EEEEEE-CCC--CGGGTTGGGTSEEEEEEE-TTS--------------SSEEEE-TTTSSSS-EE
T ss_pred             CCcCCCCCCCCCCCCeEEEEECccH--HHHHhccccCCEEEEEEEEecccc-----------cccccccCCCCCCCceee
Confidence            6899999999999999999999999  789999999999999999999831           3466788999975 7899


Q ss_pred             eeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCC
Q 016835          170 VFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDS  222 (381)
Q Consensus       170 VFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds  222 (381)
                      |||||||+||||||||+|+|++|+++.|+|+|+||+|||||||||||+|.+||
T Consensus        68 VFatRSP~RPNpIgls~v~l~~i~~~~l~v~glDa~DGTPVLDIKPy~~~~Dc  120 (120)
T PF01980_consen   68 VFATRSPHRPNPIGLSVVRLLKIDGNRLYVSGLDALDGTPVLDIKPYIPEFDC  120 (120)
T ss_dssp             GGGS--S-SSS-EEEEEEEEEEEETTEEEEEC--S-TTEEEEEEEE-HHHHHS
T ss_pred             EEcccCCCCCCCeecceeEEEEEEEeEEEEecccccCCCCEEEEEcccccccC
Confidence            99999999999999999999999999999999999999999999999999987

The function of this family is unknown.; PDB: 1XQB_A 3OKX_A 2NV4_B.

>KOG2942 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-43  Score=341.44  Aligned_cols=228  Identities=36%  Similarity=0.514  Sum_probs=188.2

Q ss_pred             ccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCC--CCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835           76 SYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDAS--RVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK  153 (381)
Q Consensus        76 ~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~--~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~  153 (381)
                      .|+-.|||+|.++|+.|.++||||++..-.++.|.|...  -+|++.|.|||+|||+|++|.||.|-+.          .
T Consensus        31 n~~n~pIG~v~~af~~K~~tprqp~I~Sr~R~~v~l~~~~fsnpehSlmgle~fSH~w~~~~fh~n~~~----------~  100 (361)
T KOG2942|consen   31 NYTNLPIGLVIEAFTGKVKTPRQPGIHSRRRRNVPLAVAAFSNPEHSLMGLEGFSHGWTTAAFHFNLAV----------V  100 (361)
T ss_pred             ccccccceeeeeccccccCCCCCcchhhhhhcceehhhhhcCCcchhhhccccccchhhhhhhhhcccc----------c
Confidence            567789999999999999999999988888888888553  2468899999999999999999998542          3


Q ss_pred             cceeeccCCCCCceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCC--------
Q 016835          154 FKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQG--------  225 (381)
Q Consensus       154 ~k~~VRpPRl~G~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~--------  225 (381)
                      -+++|.|||++|.|.|||.||||||||+||||++|+++++++.|...|+||++||||||||||++.+|+...        
T Consensus       101 ~kakv~pprl~g~r~gvfstRsphrp~~iGltL~k~ek~e~g~I~~~g~dm~~gtpvldikpyi~~Yd~ps~sidt~~~d  180 (361)
T KOG2942|consen  101 SKAKVFPPRLWGRREGVFSTRSPHRPKSIGLTLEKSEKEEKGRIKAQGADMEAGTPVLDIKPYITIYDMPSPSIDTIQSD  180 (361)
T ss_pred             chhhccCccccccccccccccCCCCCcccchhHHHhhhhhcceEEEeccchhcCcccccccccccccCCCCCCcCccccC
Confidence            378999999999999999999999999999999999999999999999999999999999999999997721        


Q ss_pred             -------------------------------------------------------------------------Ccchhhh
Q 016835          226 -------------------------------------------------------------------------AEVPEWV  232 (381)
Q Consensus       226 -------------------------------------------------------------------------a~~p~W~  232 (381)
                                                                                               +++|.|+
T Consensus       181 e~q~~~~tkr~P~~~rtS~l~h~e~~~Df~l~sr~e~~g~e~~~~~~gaav~~gn~~i~~~~~~p~ps~~~~~vrVP~wv  260 (361)
T KOG2942|consen  181 EFQTRNGTKRQPRTLRTSVLAHAELIFDFALVSRAELEGLEEYSHCWGAAVFHGNTDIEKLWRKPSPSKLKAKVRVPRWV  260 (361)
T ss_pred             CCccccCCccCCcccccccccchheeecccccCccccCchhhhhhhheeeeeeccccccccccCCCcccccccccccccc
Confidence                                                                                     2356677


Q ss_pred             h-cccceeecchhhhhhhhhhhcccccccccCChHHHHHHHHHHHccCCccccccCCCccchhhccCCCCCCCCCCCCcc
Q 016835          233 M-LTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPSDIDEN  311 (381)
Q Consensus       233 ~-~~~~~V~fs~~~~~~L~~~~~~~~~~~~~~~~~~~~~~I~qVL~~DpRs~~qr~rP~~~~y~~~~~~~~g~~~~~~~~  311 (381)
                      . .....|.|++++...|.....   |   -.....-+.+|..||..||||+|.|..  |                    
T Consensus       261 ~e~~~l~vtfspHae~~lg~l~a---~---~~~~q~~K~~i~~Vl~aDprsVy~rk~--y--------------------  312 (361)
T KOG2942|consen  261 GERKGLFVTFSPHAECPLGLLVA---K---VEEIQKDKVLISGVLLADPRSVYDRKP--Y--------------------  312 (361)
T ss_pred             cccceeEEEeCCCCcCchhhhhh---h---hHHHHHHHHHhhhhhccCCceeeeecc--c--------------------
Confidence            5 344678888888877754211   1   001124578999999999999999853  1                    


Q ss_pred             cccccccccCCCCCCCCCCeeEEEEEcceeeEEEEeCCeEEEEEEeee
Q 016835          312 QDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSI  359 (381)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~dV~~~v~~~~~~~v~~v~~  359 (381)
                                       -.++|-..+.+..|.+.++ ++...|..|+.
T Consensus       313 -----------------~~qif~fsi~~a~Vtcwf~-D~~~~V~~V~~  342 (361)
T KOG2942|consen  313 -----------------LPQIFSFSIQGASVTCWFK-DCSLAVASVTF  342 (361)
T ss_pred             -----------------ccceeEEEecceEeeeeec-ccceEEEEEEe
Confidence                             1378999999999999997 44666767765

>KOG2942 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.98  E-value=7e-35  Score=280.90  Aligned_cols=252  Identities=49%  Similarity=0.754  Sum_probs=229.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCcCcCCCC
Q 016835            3 SKTLTLVAFAVAASAISASTAISFYIWG--------KFKRLEKSLNSTLQKCAAERQGRVRAQQALRKALAQPKSENLEL   74 (381)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~~~~~~~er~gr~rae~~lr~~l~~~~~~~~~~   74 (381)
                      |++|++..|.+.+++...|.+++-|+|+        |+.+-++++..+++|-+.||.|||.|++.+++...+.++.....
T Consensus        85 SH~w~~~~fh~n~~~~~kakv~pprl~g~r~gvfstRsphrp~~iGltL~k~ek~e~g~I~~~g~dm~~gtpvldikpyi  164 (361)
T KOG2942|consen   85 SHGWTTAAFHFNLAVVSKAKVFPPRLWGRREGVFSTRSPHRPKSIGLTLEKSEKEEKGRIKAQGADMEAGTPVLDIKPYI  164 (361)
T ss_pred             cchhhhhhhhhcccccchhhccCccccccccccccccCCCCCcccchhHHHhhhhhcceEEEeccchhcCcccccccccc
Confidence            7888999999999999999999999988        67777899999999999999999999999999998888766555


Q ss_pred             Ccccee-E-EEEEEc-CCCCCCCCCCCC--CCCC-CceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccC
Q 016835           75 TSYPMT-P-IGVVQS-CFSTRNGTPRQP--LLVP-LARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKE  148 (381)
Q Consensus        75 ~~~~l~-P-IG~V~S-~f~~k~g~PRQ~--~l~~-~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~  148 (381)
                      ..|.+. | |+.+.+ +|..+.|+||||  +.+. .+.++|.|++.+.+..-++|+|+++|||..++||.|++.++.|..
T Consensus       165 ~~Yd~ps~sidt~~~de~q~~~~tkr~P~~~rtS~l~h~e~~~Df~l~sr~e~~g~e~~~~~~gaav~~gn~~i~~~~~~  244 (361)
T KOG2942|consen  165 TIYDMPSPSIDTIQSDEFQTRNGTKRQPRTLRTSVLAHAELIFDFALVSRAELEGLEEYSHCWGAAVFHGNTDIEKLWRK  244 (361)
T ss_pred             cccCCCCCCcCccccCCCccccCCccCCcccccccccchheeecccccCccccCchhhhhhhheeeeeeccccccccccC
Confidence            556665 4 999999 999999999999  5544 456789999999999999999999999999999999999999999


Q ss_pred             CcccccceeeccCCCCCceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCC--CCCCCCCC
Q 016835          149 PSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLP--YCDSIQGA  226 (381)
Q Consensus       149 ~~~~~~k~~VRpPRl~G~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip--~~Ds~~~a  226 (381)
                      +..++++++||.||+.|++.|+|+|+|||+|.|||+.+.+++.+...+..++|+|+.|++||||+|||.|  |++++.+|
T Consensus       245 p~ps~~~~~vrVP~wv~e~~~l~vtfspHae~~lg~l~a~~~~~q~~K~~i~~Vl~aDprsVy~rk~y~~qif~fsi~~a  324 (361)
T KOG2942|consen  245 PSPSKLKAKVRVPRWVGERKGLFVTFSPHAECPLGLLVAKVEEIQKDKVLISGVLLADPRSVYDRKPYLPQIFSFSIQGA  324 (361)
T ss_pred             CCcccccccccccccccccceeEEEeCCCCcCchhhhhhhhHHHHHHHHHhhhhhccCCceeeeecccccceeEEEecce
Confidence            9889999999999999999999999999999999999999999998899999999999999999999999  99999999


Q ss_pred             cchhhhh---cccceeecchhhhhhhhhhhc
Q 016835          227 EVPEWVM---LTIASVSFAEGFFSTLDDCWG  254 (381)
Q Consensus       227 ~~p~W~~---~~~~~V~fs~~~~~~L~~~~~  254 (381)
                      .++-|+.   ..+..|.|++....++..||.
T Consensus       325 ~Vtcwf~D~~~~V~~V~~~~te~v~iT~~~g  355 (361)
T KOG2942|consen  325 SVTCWFKDCSLAVASVTFSDTESVSITSCWG  355 (361)
T ss_pred             EeeeeecccceEEEEEEeccCCceeeecchh
Confidence            9999998   677899998887777777763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	381
1xqb_A	247	X-Ray Structure Of Yaeb From Haemophilus Influenzae		7e-24
2nv4_A	147	Crystal Structure Of Upf0066 Protein Af0241 In Comp		7e-15
3okx_A	169	Crystal Structure Of Yaeb-Like Protein From Rhodops		4e-09

>pdb|1XQB|A Chain A, X-Ray Structure Of Yaeb From Haemophilus Influenzae. Northeast Structural Genomics Research Consortium (Nesgc) Target Ir47. Length = 247

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 30/224 (13%)
Query: 79  MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
           ++PI ++ + +  +   PRQP LV      +        P ++ GL ++SH W+++    
Sbjct: 6   LSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIF---- 61
Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIG---LTVAKVEAVQG 194
                    +  + K++  VR PRL G +R+GVFA+R+ HRP P+G   + + +VE + G
Sbjct: 62  ------QXDQIQQGKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGXSKVELRQVECING 115
Query: 195 NTVL-LSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGFFSTLDDCW 253
           N  L L  VDLVDGTP+ D+KPY+ Y DS   A+            SFA+          
Sbjct: 116 NIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQ-----------SSFAQEKLPVKMTVE 164
Query: 254 GTAGKKSLYASIDE----LQSLIKQVLSWDIRSVSQRNRPHDSL 293
            T   KS     +E    L   I+QVL  D R   Q+ +P D +
Sbjct: 165 FTEQAKSAVKKREEKRPHLSRFIRQVLEQDPRPAYQQGKPSDRI 208

>pdb|2NV4|A Chain A, Crystal Structure Of Upf0066 Protein Af0241 In Complex With S-Adenosylmethionine. Northeast Structural Genomics Consortium Target Gr27 Length = 147

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 79  MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
           + PIGVV+S F T+N  PRQ           +FD        L  +    H  +LY    
Sbjct: 3   LKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEY---ADGLHKIENLRHIIVLY---- 55
Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVL 198
                  W + + S+ K +V VP  + E  GVF TRSP RP PIGL V ++  V+ N + 
Sbjct: 56  -------WXDKA-SRDKLRV-VPPGETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLK 106
Query: 199 LSGVDLVDGTPVLDVKPYLPYCDSIQGAE 227
           +  +D +DG+PV+D+K Y P  D +   E
Sbjct: 107 VRWLDALDGSPVIDIKKYSPEIDCVNQLE 135

>pdb|3OKX|A Chain A, Crystal Structure Of Yaeb-Like Protein From Rhodopseudomonas Palustris Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 151 KSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPV 210
           +S+    ++ PR  G+  G F+ RSP RP PIG ++A+V+   G  + + G+D +DGTP+
Sbjct: 82  RSRRDLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPL 141
Query: 211 LDVKP 215
           +D+KP
Sbjct: 142 VDLKP 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
1xqb_A	247	IR47, hypothetical UPF0066 protein HI0510; structu	5e-60
3okx_A	169	YAEB-like protein RPA0152; PSI-2, midwest center f	2e-52
2nv4_A	147	UPF0066 protein AF_0241; NESG GR27 Y241_arcfu X-RA	4e-51
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1xqb_A IR47, hypothetical UPF0066 protein HI0510; structural genomics, protein structure initiative, PSI, NESG; 2.85A {Haemophilus influenzae} SCOP: e.56.1.1 Length = 247

 Score =  193 bits (491), Expect = 5e-60
 Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 65/293 (22%)

Query: 74  LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWIL 133
           +    ++PI ++ + +  +   PRQP LV      +        P ++ GL ++SH W++
Sbjct: 1   MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLI 60

Query: 134 YVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAV 192
           +                  K++  VR PRL G +R+GVFA+R+ HRP P+G++  ++  V
Sbjct: 61  FQMDQIQQ----------GKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGMSKVELRQV 110

Query: 193 Q----GNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWV--MLTIASVSFAEGFF 246
           +       + L  VDLVDGTP+ D+KPY+ Y DS   A+       +    +V F E   
Sbjct: 111 ECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQSSFAQEKLPVKMTVEFTEQAK 170

Query: 247 STLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPS 306
           S +                  L   I+QVL  D R   Q+ +P D               
Sbjct: 171 SAVKKRE---------EKRPHLSRFIRQVLEQDPRPAYQQGKPSDR-------------- 207

Query: 307 DIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVEKVSI 359
                                    IY + L   ++ +RI       VE + I
Sbjct: 208 -------------------------IYGMSLYEFNVKWRIKAGTVNCVEVIEI 235

>3okx_A YAEB-like protein RPA0152; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: SAM; 1.80A {Rhodopseudomonas palustris} Length = 169

 Score =  171 bits (434), Expect = 2e-52
 Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 18/181 (9%)

Query: 52  GRVRAQQALRKALAQPKSENLELTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVF 111
           G + A   +R    +  S+        +  IG + + ++     PR           +  
Sbjct: 1   GHMDATDDIRAG--ELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGRADG-PVCRIEV 57

Query: 112 DASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVF 171
             + +P  +L G+ + +   + Y  H             +S+    ++ PR  G+  G F
Sbjct: 58  FETWLP--ALAGIDDGTLLEVFYWLH-------------RSRRDLLLQCPRNDGDARGTF 102

Query: 172 ATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEW 231
           + RSP RP PIG ++A+V+   G  + + G+D +DGTP++D+KP       +   +  ++
Sbjct: 103 SIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFMPLAPPKPGDF 162

Query: 232 V 232
            
Sbjct: 163 Q 163

>2nv4_A UPF0066 protein AF_0241; NESG GR27 Y241_arcfu X-RAY, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.20A {Archaeoglobus fulgidus} Length = 147

 Score =  167 bits (423), Expect = 4e-51
 Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 16/154 (10%)

Query: 79  MTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHL 138
           + PIGVV+S F T+N  PRQ           +FD        L  +    H  +LY    
Sbjct: 3   LKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDE---YADGLHKIENLRHIIVLYWMDK 59

Query: 139 NTDLEKLWKEPSKSKFKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVL 198
                        S+ K +V  P  + E  GVF TRSP RP PIGL V ++  V+ N + 
Sbjct: 60  A------------SRDKLRVVPPG-ETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLK 106

Query: 199 LSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWV 232
           +  +D +DG+PV+D+K Y P  D +   E  + +
Sbjct: 107 VRWLDALDGSPVIDIKKYSPEIDCVNQLEGQQPL 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 61/395 (15%), Positives = 113/395 (28%), Gaps = 117/395 (29%)

Query: 53  RVRAQQALRKALAQPKSENLELTSYPMTPIG----VVQSCFSTRN-------------GT 95
           R++    LR+AL + +     +    +   G     +  C S +                
Sbjct: 133 RLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 96  PRQP--LLVPLARACLVF--------DASRVPPASLEGLGE----------YSHCWILYV 135
              P  +L  L +             D S      +  +            Y +C  L V
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLV 249

Query: 136 FHLNTDLEKLWKEPSKSKFKAKVRVPRLKGER-IGVFATRSPHRPCPI-------GLTVA 187
                 L  +    + + F    ++  L   R   V    S      I        LT  
Sbjct: 250 ------LLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 188 KVEAVQGNTVLLSGVDLVDGTP--VLDVKPYLPYCDSIQGAEVPEWVMLTIASVSFAEGF 245
           +V+++    +     DL    P  VL   P      SI    + + +             
Sbjct: 302 EVKSLLLKYLDCRPQDL----PREVLTTNPRRL---SIIAESIRDGL------------- 341

Query: 246 FSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNR-------------PHDS 292
            +T D+ W        + + D+L ++I+  L+  +     R               P   
Sbjct: 342 -ATWDN-W-------KHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 293 LVMIGNDKAFGNPSDIDENQDEETSVCRSDQGPTPSEDVIY-HLILEGLDLSYRIDGNGN 351
           L +I  D    +   +  N+  + S+        P E  I    I   L+L  +++    
Sbjct: 392 LSLIWFDVIKSDVMVV-VNKLHKYSLVEKQ----PKESTISIPSIY--LELKVKLENEYA 444

Query: 352 V---IVEKVSISSEFPN---GKQNRCNYSMWRDHL 380
           +   IV+  +I   F +          Y     H+
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HI 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
1xqb_A	247	IR47, hypothetical UPF0066 protein HI0510; structu	100.0
2nv4_A	147	UPF0066 protein AF_0241; NESG GR27 Y241_arcfu X-RA	100.0
3okx_A	169	YAEB-like protein RPA0152; PSI-2, midwest center f	100.0

>1xqb_A IR47, hypothetical UPF0066 protein HI0510; structural genomics, protein structure initiative, PSI, NESG; 2.85A {Haemophilus influenzae} SCOP: e.56.1.1

Probab=100.00  E-value=5.1e-75  Score=551.34  Aligned_cols=227  Identities=31%  Similarity=0.572  Sum_probs=163.9

Q ss_pred             CCccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835           74 LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK  153 (381)
Q Consensus        74 ~~~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~  153 (381)
                      |+.|+++|||+|+|||++++|+|||+++++...++|+|.++|+.++||+|||+|||||||||||++.+          .+
T Consensus         1 m~~~~l~pIG~I~s~~~~k~~~PrQ~~~~~~~~~~Iel~~~y~~~~aL~GLE~fSHl~vl~~Fh~~~~----------~~   70 (247)
T 1xqb_A            1 MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQMDQIQQ----------GK   70 (247)
T ss_dssp             CCCEEECCCEEEECSBCSGGGSCSCTTTCTTCEEEEEECTTTCCTTTTTTGGGCSEEEEEEEC-----------------
T ss_pred             CCceEEEEEEEEecCCCCccCCCCCCCcCCCccEEEEECCCcCCHHHHcCcccCCEEEEEEEEccCCc----------cc
Confidence            45789999999999999999999999999999999999999977899999999999999999999853          35


Q ss_pred             cceeeccCCCCC-ceeeeeeccCCCCCCcceeeeEEEeEEE----CCeEEEeeccccCCCceeeeecCCCCCCCCCCCcc
Q 016835          154 FKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQ----GNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEV  228 (381)
Q Consensus       154 ~k~~VRpPRl~G-~kvGVFATRSP~RPNPIGLSvVkL~~Ve----g~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~  228 (381)
                      ++++|||||++| +++|||||||||||||||||+|+|++|+    +++|+|+|+||+|||||||||||+|++|++++|+.
T Consensus        71 ~~~~VrPprl~g~~~~GVFATRSP~RPNpIGlS~V~L~~ve~~~g~~~L~V~GlD~lDGTPVlDIKPYip~~D~~~~a~~  150 (247)
T 1xqb_A           71 WQPTVRPPRLGGNQRVGVFASRATHRPNPLGMSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQS  150 (247)
T ss_dssp             ---------------CCGGGSCCSCCSSCEEEEEEEEEEEEEETTEEEEEEEECCSCTTCEEEEEEECCHHHHCCTTCCC
T ss_pred             cceEecCCCCCCCceeeeeeccCCCCCCCcEEEEEEEEEEEccCCceEEEEecccccCCCcEeeeecccccccCcccccc
Confidence            678999999987 6899999999999999999999999999    37899999999999999999999999999999986


Q ss_pred             hhhhh---cccceeecchhhhhhhhhhhcccccccccCChHHHHHHHHHHHccCCccccccCCCccchhhccCCCCCCCC
Q 016835          229 PEWVM---LTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNP  305 (381)
Q Consensus       229 p~W~~---~~~~~V~fs~~~~~~L~~~~~~~~~~~~~~~~~~~~~~I~qVL~~DpRs~~qr~rP~~~~y~~~~~~~~g~~  305 (381)
                       +|++   ...++|.|+++++++|..         ++.+.++++++|+|||+|||||+||+.++                
T Consensus       151 -gw~~~~~~~~~~V~f~~~a~~~l~~---------~~~~~~~l~~~i~~vL~qDPRp~y~~~~~----------------  204 (247)
T 1xqb_A          151 -SFAQEKLPVKMTVEFTEQAKSAVKK---------REEKRPHLSRFIRQVLEQDPRPAYQQGKP----------------  204 (247)
T ss_dssp             -C-------CCCCEEECHHHHHHHHH---------HTTTSTTTTTTCCSTTC----------------------------
T ss_pred             -chhhcCCccceEEEcCHHHHHhhhh---------hhcchHHHHHHHHHHHhcCCCccccCCCC----------------
Confidence             8997   245799999999988852         12334678999999999999999987432                


Q ss_pred             CCCCcccccccccccCCCCCCCCCCeeEEEEEcceeeEEEEeC--CeEEEEEEeee
Q 016835          306 SDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDG--NGNVIVEKVSI  359 (381)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~dV~~~v~~--~~~~~v~~v~~  359 (381)
                                             ++++|||.|+|+||+|+|+.  ++.+.|.+|..
T Consensus       205 -----------------------~~~~y~~~~~~~~V~f~v~~~~~~~~~V~~i~~  237 (247)
T 1xqb_A          205 -----------------------SDRIYGMSLYEFNVKWRIKAGTVNCVEVIEIEK  237 (247)
T ss_dssp             ------------------------CCCCEEEETTEEEEC---CEEECCBC------
T ss_pred             -----------------------CCcEEEEEEcCEEEEEEEecCCCCeEEEEEEEh
Confidence                                   25899999999999999982  23466666663

>2nv4_A UPF0066 protein AF_0241; NESG GR27 Y241_arcfu X-RAY, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.20A {Archaeoglobus fulgidus}

Probab=100.00  E-value=6.2e-59  Score=411.95  Aligned_cols=139  Identities=34%  Similarity=0.493  Sum_probs=125.5

Q ss_pred             cceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccccce
Q 016835           77 YPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSKFKA  156 (381)
Q Consensus        77 ~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~~k~  156 (381)
                      |+++|||+|+|||++++|+|||+++. ...++|+|+++|  .+||+|||+|||||||||||++.            .++.
T Consensus         1 ~~l~pIG~i~s~~~~~~~~PrQ~~~~-~~~~~I~l~~~y--~~~L~GLe~fShi~vl~~fh~~~------------~~~~   65 (147)
T 2nv4_A            1 MILKPIGVVKSPFKTQNDAPRQGRFS-DAVSEIAIFDEY--ADGLHKIENLRHIIVLYWMDKAS------------RDKL   65 (147)
T ss_dssp             CBCCCCEEEECSCCSTTTSCSSGGGC-CCEEEEEECHHH--HGGGTTGGGCSEEEEEEECTTSC------------SSCC
T ss_pred             CeeEEEEEEecCCCCccCCCCCcccc-CccEEEEECCcH--HHHHhCccCCCEEEEEEEEecCC------------CcEE
Confidence            57899999999999999999999986 789999999998  69999999999999999999973            2477


Q ss_pred             eeccCCCCCceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCCCcchhh
Q 016835          157 KVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEW  231 (381)
Q Consensus       157 ~VRpPRl~G~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~p~W  231 (381)
                      +|+|||+++ ++||||||||+||||||||+|||++|++++|+|+|+||+|||||||||||+|++|++++|+.+.|
T Consensus        66 ~v~P~~~~~-~~GVFATRSP~RPNpIGlS~V~L~~veg~~L~V~glD~lDGTPVlDIKPY~p~~D~~~~a~~g~~  139 (147)
T 2nv4_A           66 RVVPPGETE-ERGVFTTRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVIDIKKYSPEIDCVNQLEGQQP  139 (147)
T ss_dssp             EECCTTCCS-CEEGGGSCCSCSSSCEEEEEEEEEEEETTEEEEESCCCCTTCEEEEEEECCHHHHCCCC------
T ss_pred             EecCCCCCc-eEEEEeccCCCCCCCcEEEEEEEeEEECCEEEEcCccccCCCcEEEEEcCCccccCCccCCCCcc
Confidence            899988765 99999999999999999999999999999999999999999999999999999999999997543

>3okx_A YAEB-like protein RPA0152; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: SAM; 1.80A {Rhodopseudomonas palustris}

Probab=100.00  E-value=3.8e-56  Score=401.09  Aligned_cols=143  Identities=24%  Similarity=0.396  Sum_probs=128.7

Q ss_pred             CCccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835           74 LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK  153 (381)
Q Consensus        74 ~~~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~  153 (381)
                      ...+.+.|||+|||||++|+|+|||+++ ....++|+|+++|  .+||+|||+|||||||||||++..            
T Consensus        21 ~~d~~l~pIG~I~Sp~~~k~~~PRQ~~~-~~~~~~Iei~~~y--~~aL~GLe~fSHi~vl~~fh~~~~------------   85 (169)
T 3okx_A           21 SPDAGVVFIGRIHTPWNRLKECPRHGRA-DGPVCRIEVFETW--LPALAGIDDGTLLEVFYWLHRSRR------------   85 (169)
T ss_dssp             CCSEEECCCEEEECSCSSGGGSCSSCCT-TSCCEEEEECGGG--GGGGTTCCTTCEEEEEEECTTCCS------------
T ss_pred             CCCceeeEEEEEeCCCCCCCCCCCCCCC-CCceEEEEECccH--HHHHhccccCCEEEEEEEEccCCC------------
Confidence            4578999999999999999999999998 6788999999998  589999999999999999999742            


Q ss_pred             cceeeccCCCCCceeeeeeccCCCCCCcceeeeEEEeEEECCeEEEeeccccCCCceeeeecCCCCCCCCCCCcchhhhh
Q 016835          154 FKAKVRVPRLKGERIGVFATRSPHRPCPIGLTVAKVEAVQGNTVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWVM  233 (381)
Q Consensus       154 ~k~~VRpPRl~G~kvGVFATRSP~RPNPIGLSvVkL~~Veg~~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~p~W~~  233 (381)
                       ..++++||++|.++|||||||||||||||||+|||++|++++|+|+|+||+|||||||||||++.++.....+ ++|.+
T Consensus        86 -~~~~~~Pr~~~~~~GVFATRSP~RPNPIGlS~V~L~~veg~~L~V~glD~lDGTPVlDIKPy~~~f~p~~p~~-~g~~~  163 (169)
T 3okx_A           86 -DLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFMPLAPPK-PGDFQ  163 (169)
T ss_dssp             -CEEEECC---CCCEEGGGSCCSCSSSCEEEEEEEEEEEETTEEEESCCCCCTTEEEEEEEECGGGCCCCSCCC-GGGGC
T ss_pred             -cceEeCCCCCCcceeEEcccCCCCCCCeEeeEEEEEEEECCEEEEeeccccCCCceEEeecCcccccCCCCCC-CCccc
Confidence             2467799999999999999999999999999999999999999999999999999999999999999887665 57765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d1xqba_	231	e.56.1.1 (A:) Hypothetical protein HI0510 {Haemoph	4e-65

>d1xqba_ e.56.1.1 (A:) Hypothetical protein HI0510 {Haemophilus influenzae [TaxId: 727]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: YaeB-like
superfamily: YaeB-like
family: YaeB-like
domain: Hypothetical protein HI0510
species: Haemophilus influenzae [TaxId: 727]

 Score =  204 bits (521), Expect = 4e-65
 Identities = 75/289 (25%), Positives = 116/289 (40%), Gaps = 65/289 (22%)

Query: 74  LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWIL 133
           +    ++PI ++ + +  +   PRQP LV      +        P ++ GL ++SH W++
Sbjct: 1   MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLI 60

Query: 134 YVFHLNTDLEKLWKEPSKSKFKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVA---KV 189
           +                  K++  VR PRL G +R+GVFA+R+ HRP P+G++     +V
Sbjct: 61  FQMDQIQQ----------GKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGMSKVELRQV 110

Query: 190 EAVQGNTVL-LSGVDLVDGTPVLDVKPYLPYCDSIQGAEVPEWV--MLTIASVSFAEGFF 246
           E + GN  L L  VDLVDGTP+ D+KPY+ Y DS   A+       +    +V F E   
Sbjct: 111 ECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQSSFAQEKLPVKMTVEFTEQAK 170

Query: 247 STLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNPS 306
           S +                  L   I+QVL  D R   Q+ +P D               
Sbjct: 171 SAVKKRE---------EKRPHLSRFIRQVLEQDPRPAYQQGKPSDR-------------- 207

Query: 307 DIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNGNVIVE 355
                                    IY + L   ++ +RI       VE
Sbjct: 208 -------------------------IYGMSLYEFNVKWRIKAGTVNCVE 231

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1xqba_	231	Hypothetical protein HI0510 {Haemophilus influenza	100.0

>d1xqba_ e.56.1.1 (A:) Hypothetical protein HI0510 {Haemophilus influenzae [TaxId: 727]}

class: Multi-domain proteins (alpha and beta)
fold: YaeB-like
superfamily: YaeB-like
family: YaeB-like
domain: Hypothetical protein HI0510
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=2.7e-76  Score=553.24  Aligned_cols=218  Identities=32%  Similarity=0.598  Sum_probs=162.3

Q ss_pred             CCccceeEEEEEEcCCCCCCCCCCCCCCCCCceEEEEEcCCCCChhhhcCCCCCCeEEEEEEEeccccchhhccCCcccc
Q 016835           74 LTSYPMTPIGVVQSCFSTRNGTPRQPLLVPLARACLVFDASRVPPASLEGLGEYSHCWILYVFHLNTDLEKLWKEPSKSK  153 (381)
Q Consensus        74 ~~~~~l~PIG~V~S~f~~k~g~PRQ~~l~~~~~~~I~l~~~~~~~eaL~GLE~fSHiwvif~FH~n~~~~~~w~~~~~~~  153 (381)
                      |.+|+|+|||+|||||++|||+|||+++++.+++.|+|.++|.+.+||+|||+|||||||||||++..          ..
T Consensus         1 m~~~tl~pIG~i~s~~~~k~~~PrQ~~l~~~~~~~iei~~~~~~~e~L~GLe~fShiwvl~~fh~~~~----------~~   70 (231)
T d1xqba_           1 MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQMDQIQQ----------GK   70 (231)
T ss_dssp             CCCEEECCCEEEECSBCSGGGSCSCTTTCTTCEEEEEECTTTCCTTTTTTGGGCSEEEEEEEC-----------------
T ss_pred             CCceEEEeEEEEeCCCCCccCCCCCCCCCCCceEEEEECCCcCCHhHhhcccCCCEEEEEEEccCCCc----------cc
Confidence            67899999999999999999999999999999999999999988899999999999999999999743          56


Q ss_pred             cceeeccCCCCC-ceeeeeeccCCCCCCcceeeeEEEeEEEC---C-eEEEeeccccCCCceeeeecCCCCCCCCCCCcc
Q 016835          154 FKAKVRVPRLKG-ERIGVFATRSPHRPCPIGLTVAKVEAVQG---N-TVLLSGVDLVDGTPVLDVKPYLPYCDSIQGAEV  228 (381)
Q Consensus       154 ~k~~VRpPRl~G-~kvGVFATRSP~RPNPIGLSvVkL~~Veg---~-~L~V~GlDllDGTPVLDIKPYip~~Ds~~~a~~  228 (381)
                      ++++|||||++| .++|||||||||||||||||+|+|++|++   + .|+|+|+||+|||||||||||+|++|++|+|+.
T Consensus        71 ~~~~v~pPr~~g~~~~GVFATRSP~RPNPIGlS~V~l~~ie~~~g~~~L~V~glDllDGTPVLDIKPY~p~~D~~p~a~~  150 (231)
T d1xqba_          71 WQPTVRPPRLGGNQRVGVFASRATHRPNPLGMSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQS  150 (231)
T ss_dssp             ---------------CCGGGSCCSCCSSCEEEEEEEEEEEEEETTEEEEEEEECCSCTTCEEEEEEECCHHHHCCTTCCC
T ss_pred             cceeeeCCCCCCCcccceeccCCCCCCCCeEEEEEEEEEEEccCCceEEEEecccccCCceeeeeeeccccccCCccccc
Confidence            789999999998 68999999999999999999999999993   3 499999999999999999999999999999975


Q ss_pred             hhhhh---cccceeecchhhhhhhhhhhcccccccccCChHHHHHHHHHHHccCCccccccCCCccchhhccCCCCCCCC
Q 016835          229 PEWVM---LTIASVSFAEGFFSTLDDCWGTAGKKSLYASIDELQSLIKQVLSWDIRSVSQRNRPHDSLVMIGNDKAFGNP  305 (381)
Q Consensus       229 p~W~~---~~~~~V~fs~~~~~~L~~~~~~~~~~~~~~~~~~~~~~I~qVL~~DpRs~~qr~rP~~~~y~~~~~~~~g~~  305 (381)
                       +|.+   ...++|.|++++.++|..+.         ...++++++|+|||+|||||+||+.++                
T Consensus       151 -g~~~~~~~~~~~V~~~~~a~~~l~~~~---------~~~~~l~~~I~~vL~~DPRp~y~~~~~----------------  204 (231)
T d1xqba_         151 -SFAQEKLPVKMTVEFTEQAKSAVKKRE---------EKRPHLSRFIRQVLEQDPRPAYQQGKP----------------  204 (231)
T ss_dssp             -C-------CCCCEEECHHHHHHHHHHT---------TTSTTTTTTCCSTTC----------------------------
T ss_pred             -ccccccCCceeEEecCHHHHHHHHHHH---------hhhHHHHHHHHHHHhcCCCchhcCCCC----------------
Confidence             7876   24468999999999987543         123468899999999999999998653                


Q ss_pred             CCCCcccccccccccCCCCCCCCCCeeEEEEEcceeeEEEEeCCe
Q 016835          306 SDIDENQDEETSVCRSDQGPTPSEDVIYHLILEGLDLSYRIDGNG  350 (381)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~dV~~~v~~~~  350 (381)
                                             ++++|||.|+++||+|++++++
T Consensus       205 -----------------------~~~~y~~~l~~~~v~~~~~~~~  226 (231)
T d1xqba_         205 -----------------------SDRIYGMSLYEFNVKWRIKAGT  226 (231)
T ss_dssp             ------------------------CCCCEEEETTEEEEC---CEE
T ss_pred             -----------------------CCcEEEEEECCeEEEEEEECCE
Confidence                                   2579999999999999997764