Citrus Sinensis ID: 016836


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MSRLAPLSEEPINEEEQHSNSSNGSNNTKYSSKKGLSWKHWLKNHLSLVFFINKKSDLKTLLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPKEVQKDSYPVDENLDWRSPLR
cccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccHHHHHcccccEEEEEEEEEEEccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEccEEEEEcccccEEEEccccccccccccccHHHHHHHHccccHHHHHHHcccEEEEEEEEccccEEEEEEEccccccccccccccEEEEEEEEEEcccccccEEEEEccEEEEEEccccccEEEEEEcccccccccccccEEEEEccccEEEEEEEcccccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccc
cccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcEEEEEEEEEcccccccEEccccccccccccccccccEEEEEccccEEEEEEEEEcEEEEEccccEEEEEEccccccccccccccHHHHHHccccHHHHHHHHHccEEEcEEEEccccEEEEEEEccHHHHHHccccccEEEEEEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEEcHccHHccccccEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEEccccccccccccHHHHHccccccccccccccccc
msrlaplseepineeeqhsnssngsnntkysskkglswkHWLKNHLSLVFFINKKSDLKTLLSVlgcplfpvpllpkqplnqvcSSAQYIIQHFTAAtgcrklegRVKNIFATGKvtmgmgddfggsagsvpvagagasaslggvsekGCFVMWQMVPNKWLIELVVGGHkvvagsdgnfawrhtpwlgshaakgsvRPLRralqgldpiavASVFSTAQYvgekrisdIDCFVLKLAAnqtdladrsdSTAEMIKHVIFGYFSQRSGLLVYLEdsyltriqspgtqptywETTMATKIEDYRAIEGVmiahsgqsSVIITRFGDNLKAGLSITRMEETWTIDDLAFnvaglsldcfippkevqkdsypvdenldwrsplr
msrlaplseepineeeqhsnssngsnntKYSSKKGLSWKHWLKNHLSLVFFINKKSDLKTLLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTaatgcrklegRVKNIFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTriqspgtqptywETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFippkevqkdsypvdenldwrsplr
MSRLAPLSEEPINEEEQHSNSSNGSNNTKYSSKKGLSWKHWLKNHLSLVFFINKKSDLKTLLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMGDDFggsagsvpvagagasaslggvsEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPKEVQKDSYPVDENLDWRSPLR
**********************************GLSWKHWLKNHLSLVFFINKKSDLKTLLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPP*********************
*SRLAPLSEEPIN******************************************SDLKTLLSVLGCPLFPVPLLPKQ***QVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMG**************************KGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWR*****************RRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAAN************EMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPKEV***********D*R****
**********************************GLSWKHWLKNHLSLVFFINKKSDLKTLLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPKEVQKDSYPVDENLDWRSPLR
***********************************L**K*W****LSLVFFINKKSDLKTLLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVA*************KGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPKEVQK****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRLAPLSEEPINEEEQHSNSSNGSNNTKYSSKKGLSWKHWLKNHLSLVFFINKKSDLKTLLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPKEVQKDSYPVDENLDWRSPLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
224088152360 predicted protein [Populus trichocarpa] 0.942 0.997 0.771 1e-168
297739785 660 unnamed protein product [Vitis vinifera] 0.944 0.545 0.755 1e-165
225441559362 PREDICTED: uncharacterized protein LOC10 0.944 0.994 0.755 1e-165
356500391361 PREDICTED: uncharacterized protein LOC10 0.929 0.980 0.703 1e-151
356570933353 PREDICTED: uncharacterized protein LOC10 0.913 0.985 0.667 1e-143
356533085385 PREDICTED: uncharacterized protein LOC10 0.918 0.909 0.694 1e-143
449437546365 PREDICTED: uncharacterized protein LOC10 0.950 0.991 0.669 1e-140
224139938313 predicted protein [Populus trichocarpa] 0.821 1.0 0.669 1e-138
297806679368 hypothetical protein ARALYDRAFT_908591 [ 0.934 0.967 0.635 1e-132
15240096368 uncharacterized protein [Arabidopsis tha 0.934 0.967 0.627 1e-131
>gi|224088152|ref|XP_002308345.1| predicted protein [Populus trichocarpa] gi|222854321|gb|EEE91868.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 294/381 (77%), Positives = 325/381 (85%), Gaps = 22/381 (5%)

Query: 1   MSRLAPLSEEPINEEEQHSNSSNGSNNTKYSSKKGLSWKHWLKNHLSLVFFINKKSDLKT 60
           MSRLAPLSEEPINE+E++S        T  S KKG SWK+WLK H  LVF  NKKSDLK 
Sbjct: 1   MSRLAPLSEEPINEDEEYS--------TNCSKKKGYSWKNWLKTHFYLVF--NKKSDLKV 50

Query: 61  LLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGM 120
           LLSVLGCPLFPV +  K P+N+V SSAQYIIQHF+AATGCRKL+G VKN+FATGKVTM M
Sbjct: 51  LLSVLGCPLFPVSIHSKLPINEVSSSAQYIIQHFSAATGCRKLQGEVKNLFATGKVTMAM 110

Query: 121 GDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNF 180
            D+ GGS    P+AGA        V+EKGCFVMWQM PNKWLIELVV GHKVVAGSDGN 
Sbjct: 111 VDELGGS----PMAGATT------VAEKGCFVMWQMAPNKWLIELVVDGHKVVAGSDGNV 160

Query: 181 AWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAAN 240
           AWRHTPWL SHAAKG VRPLRRALQGLDP+A+++VFS AQY+GEKR+S  DCFVLKL+A+
Sbjct: 161 AWRHTPWLASHAAKGGVRPLRRALQGLDPMAISAVFSPAQYMGEKRVSGTDCFVLKLSAD 220

Query: 241 QTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIE 300
           Q DLA RSDSTAEMIKH+IFGYFSQRSGLLV+LEDSYLTRIQSPGT PTYWETTMATKIE
Sbjct: 221 QADLAARSDSTAEMIKHIIFGYFSQRSGLLVHLEDSYLTRIQSPGTYPTYWETTMATKIE 280

Query: 301 DYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPP 360
           DYR +EGVMIAH GQSSV+ITRFGD+LK+GLSITRMEETWTIDDLAFNV GLS+DCFIPP
Sbjct: 281 DYRIVEGVMIAHGGQSSVMITRFGDSLKSGLSITRMEETWTIDDLAFNVPGLSMDCFIPP 340

Query: 361 KEVQKDSYPVDENLDWRSPLR 381
           +E+QKD YP +ENLDWRSPL 
Sbjct: 341 EEMQKD-YP-EENLDWRSPLH 359




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739785|emb|CBI29967.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441559|ref|XP_002281244.1| PREDICTED: uncharacterized protein LOC100267519 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356500391|ref|XP_003519015.1| PREDICTED: uncharacterized protein LOC100801654 [Glycine max] Back     alignment and taxonomy information
>gi|356570933|ref|XP_003553637.1| PREDICTED: uncharacterized protein LOC100800778 [Glycine max] Back     alignment and taxonomy information
>gi|356533085|ref|XP_003535099.1| PREDICTED: uncharacterized protein LOC100800198 [Glycine max] Back     alignment and taxonomy information
>gi|449437546|ref|XP_004136553.1| PREDICTED: uncharacterized protein LOC101217417 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224139938|ref|XP_002323349.1| predicted protein [Populus trichocarpa] gi|222867979|gb|EEF05110.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297806679|ref|XP_002871223.1| hypothetical protein ARALYDRAFT_908591 [Arabidopsis lyrata subsp. lyrata] gi|297317060|gb|EFH47482.1| hypothetical protein ARALYDRAFT_908591 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240096|ref|NP_196279.1| uncharacterized protein [Arabidopsis thaliana] gi|13899059|gb|AAK48951.1|AF370524_1 Unknown protein [Arabidopsis thaliana] gi|10178117|dbj|BAB11410.1| unnamed protein product [Arabidopsis thaliana] gi|20148283|gb|AAM10032.1| unknown protein [Arabidopsis thaliana] gi|332003659|gb|AED91042.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2144128368 AT5G06610 "AT5G06610" [Arabido 0.934 0.967 0.621 4.6e-121
TAIR|locus:2101510485 AT3G19540 "AT3G19540" [Arabido 0.916 0.719 0.450 4.5e-82
TAIR|locus:2199191433 AT1G27690 "AT1G27690" [Arabido 0.931 0.819 0.455 2e-81
TAIR|locus:2206425417 AT1G79420 "AT1G79420" [Arabido 0.832 0.760 0.477 1.4e-78
TAIR|locus:2007268494 AT1G49840 "AT1G49840" [Arabido 0.916 0.706 0.442 4.8e-78
TAIR|locus:2166414439 AT5G05840 "AT5G05840" [Arabido 0.839 0.728 0.423 2.4e-69
TAIR|locus:2078946438 AT3G55720 "AT3G55720" [Arabido 0.737 0.641 0.414 3e-53
TAIR|locus:2173634370 AT5G66740 "AT5G66740" [Arabido 0.905 0.932 0.362 2.1e-52
TAIR|locus:2025207395 AT1G75160 "AT1G75160" [Arabido 0.808 0.779 0.380 2.4e-51
TAIR|locus:2144128 AT5G06610 "AT5G06610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 232/373 (62%), Positives = 277/373 (74%)

Query:     1 MSRLAPLSEEPINEEEQHSNSSNGSNNTKYSSKKGLSWKHWLKNHLSLVFFINKKSDLKT 60
             M RLAPL EEPI+EE+Q         +T+  SK   SWK W+K  L  + F  KK D+K 
Sbjct:     1 MQRLAPLMEEPIDEEDQEEERGGRKGSTR--SK---SWKKWIKTQLQFIVF-PKKPDMKL 54

Query:    61 LLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGM 120
             LLSV+GCPLFPVP L K  L QV SSAQYIIQ F AATGC+KL G +KN F TGK+TM M
Sbjct:    55 LLSVMGCPLFPVPPLSKISLQQVSSSAQYIIQQFAAATGCKKLAGEIKNTFVTGKITMTM 114

Query:   121 GDDFXXXXXXXXXXXXXXXXXXXXXXEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNF 180
               D                        KGCFVMWQM+P KWLIELV GGHKV AGSDG  
Sbjct:   115 VSDINSSTAVSSASSVS---------HKGCFVMWQMLPEKWLIELVGGGHKVSAGSDGEI 165

Query:   181 AWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAAN 240
              WR+TPWLG HAAKG++RPLRRALQGLDP+ ++SVFS+AQ+VGEK I+  DCF+LKL+ +
Sbjct:   166 TWRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFVGEKEINGKDCFILKLSTD 225

Query:   241 QTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIE 300
             Q DL+ RSDSTAEMIKHV FGYFSQ+SGLL+ LEDS LTRIQ PGT PTYWET+M++ +E
Sbjct:   226 QIDLSKRSDSTAEMIKHVAFGYFSQKSGLLICLEDSSLTRIQIPGTVPTYWETSMSSWME 285

Query:   301 DYRAIEG--VMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFI 358
             DYRAIEG  V+IAHSG++ V+I+RFG+ LK G+S+TRMEE WTIDD+AF+V GLS+DCFI
Sbjct:   286 DYRAIEGSEVVIAHSGKTDVLISRFGETLKGGISVTRMEEKWTIDDVAFDVPGLSVDCFI 345

Query:   359 PPKEVQKDSYPVD 371
             PPKE++ D +  D
Sbjct:   346 PPKEMKMDFHHQD 358




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2101510 AT3G19540 "AT3G19540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199191 AT1G27690 "AT1G27690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206425 AT1G79420 "AT1G79420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007268 AT1G49840 "AT1G49840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166414 AT5G05840 "AT5G05840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078946 AT3G55720 "AT3G55720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173634 AT5G66740 "AT5G66740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025207 AT1G75160 "AT1G75160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
grail3.0030006902
hypothetical protein (360 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
pfam04788243 pfam04788, DUF620, Protein of unknown function (DU 1e-132
>gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620) Back     alignment and domain information
 Score =  378 bits (972), Expect = e-132
 Identities = 152/250 (60%), Positives = 180/250 (72%), Gaps = 8/250 (3%)

Query: 111 FATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGH 170
           +A GKV M   +   G+  SV           GG  E G FV+WQM P+ W +ELVVGG 
Sbjct: 2   YAMGKVKMIASEFEIGNGKSVRRNS-------GGSGESGGFVLWQMKPDMWYVELVVGGS 54

Query: 171 KVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDI 230
           KV AGSDG   WRHTPWLG+HAAKG VRPLRRALQGLDP   AS+F+ AQ VGEKR+   
Sbjct: 55  KVSAGSDGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASLFANAQCVGEKRVDGE 114

Query: 231 DCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTY 290
           DCFVLKL A+   L+ RSD  AE+I+H +FGYFSQRSGLLV LEDS+LTRIQ+PG    Y
Sbjct: 115 DCFVLKLDADPAALSARSDGPAEVIRHTLFGYFSQRSGLLVRLEDSHLTRIQTPGADAVY 174

Query: 291 WETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVA 350
           WETT+ + + DYRA++GVMIAHSG+S V + RFG++  +  S TRMEE WTIDD+AFNV 
Sbjct: 175 WETTIESSLGDYRAVDGVMIAHSGRSVVTLFRFGEDSGSH-SRTRMEEAWTIDDVAFNVP 233

Query: 351 GLSLDCFIPP 360
           GLS D FIPP
Sbjct: 234 GLSPDSFIPP 243


Family of uncharacterized proteins. Length = 243

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
PF04788245 DUF620: Protein of unknown function (DUF620); Inte 100.0
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins Back     alignment and domain information
Probab=100.00  E-value=5.8e-140  Score=977.67  Aligned_cols=243  Identities=63%  Similarity=1.059  Sum_probs=234.1

Q ss_pred             eEEecceeeeeecccCCCCCcccccccCccCCCCCccccceEEEeeecCCceEEEEEeeCeeeeecCCCceeeecCCCCc
Q 016836          110 IFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLG  189 (381)
Q Consensus       110 myA~GkVrM~~~sE~~~~~~~v~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~g  189 (381)
                      |||||||||++ +||+++++++++      .+.++.+|+||||||||+|||||||||||||||+||||||||||||||||
T Consensus         1 mya~GkVrM~~-se~~~~~~~~~~------~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g   73 (245)
T PF04788_consen    1 MYAMGKVRMAA-SEFEGGSGSVTK------VGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQG   73 (245)
T ss_pred             CceeeeEEEEE-EeeccCCccccc------cccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCcccc
Confidence            89999999999 688887666542      24667899999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCchhhhhhcCCCchhhhhccccceeeeeeecCCcceeEEEeccCchhhcccCCCCceEEEeeeecccccccce
Q 016836          190 SHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGL  269 (381)
Q Consensus       190 sHAakGp~RPLRR~lQGLDPr~tA~lF~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGL  269 (381)
                      +||||||||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++||||||||||
T Consensus        74 ~HAakGp~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGL  153 (245)
T PF04788_consen   74 SHAAKGPPRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGL  153 (245)
T ss_pred             chhhcCCCchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecceeeeecC--CCCCCeEEeeccccccccccccCceeeecCCcceEEEEeeccccccCccccceeeeeeeeeeec
Q 016836          270 LVYLEDSYLTRIQS--PGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAF  347 (381)
Q Consensus       270 Lv~lEDs~Ltriqs--~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~RfGe~~~~~~~~TrMEE~WtIeeV~F  347 (381)
                      |||||||||||||+  +++++|||||||||+|+|||+||||||||+|||+||||||||++++| ++|||||+|+||||||
T Consensus       154 Lv~lEDS~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h-~rTrmEE~W~Ieev~F  232 (245)
T PF04788_consen  154 LVQLEDSHLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSH-SRTRMEETWTIEEVDF  232 (245)
T ss_pred             eeeeecceeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccC-ceeeEeeeeEeeeEEe
Confidence            99999999999999  88999999999999999999999999999999999999999998755 8899999999999999


Q ss_pred             ccCCCCCcccCCC
Q 016836          348 NVAGLSLDCFIPP  360 (381)
Q Consensus       348 NV~GLS~DcFiPP  360 (381)
                      |||||||||||||
T Consensus       233 NV~GLS~DcFiPP  245 (245)
T PF04788_consen  233 NVPGLSMDCFIPP  245 (245)
T ss_pred             ccCCcchhcccCC
Confidence            9999999999999




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 53/355 (14%), Positives = 105/355 (29%), Gaps = 109/355 (30%)

Query: 85  SSAQY----IIQHFTAA----TGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVAGA 136
              QY    I+  F  A      C+ ++   K+I +  ++     D    S      A +
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-----DHIIMS----KDAVS 62

Query: 137 GASASLGGVSEKGC-----FVMWQMVPN-KWLIELVVGGHKVVAGSDGNFAWRHTP-WLG 189
           G       +  K       FV   +  N K+L+  +    +  +     +  +    +  
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 190 SHA-AKGSV-RP-----LRRALQGLDP---IAV------------ASV---------FST 218
           +   AK +V R      LR+AL  L P   + +              V            
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 219 AQY---VGEKRISD-----IDCFVLKLAANQTDLADRSDST---AEMIKHVIFGYFSQRS 267
             +   +      +     +   + ++  N T  +D S +       I+  +      + 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 268 ---GLLVYLEDSYLTRIQSPGTQPTYWE----------TTMATKIEDYRAIEGVMIAHSG 314
               LLV L +     +Q+       W           TT   ++ D+     +  A + 
Sbjct: 243 YENCLLV-LLN-----VQNAKA----WNAFNLSCKILLTTRFKQVTDF-----LSAATTT 287

Query: 315 QSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPKEVQKDSYP 369
             S+      D+    L+    +E  ++  L              P+EV   + P
Sbjct: 288 HISL------DHHSMTLT---PDEVKSL--LL-KYLDCRPQDL--PREVLTTN-P 327


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
3buu_A229 Uncharacterized LOLA superfamily protein NE2245; P 97.78
3bk5_A237 Putative outer membrane lipoprotein-sorting prote; 97.5
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} Back     alignment and structure
Probab=97.78  E-value=0.00082  Score=58.73  Aligned_cols=208  Identities=14%  Similarity=0.140  Sum_probs=117.4

Q ss_pred             chhHHHHHhHhHhcCchhhcccceeeEEecceeeeeecccCCCCCcccccccCccCCCCCccccceEEEeeecCCceEEE
Q 016836           85 SSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIE  164 (381)
Q Consensus        85 SsAqYIvqQy~AAtGg~k~~~~v~smyA~GkVrM~~~sE~~~~~~~v~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~E  164 (381)
                      -+|+=|+++..++.++.      ++..+..+  |...   ..++                ....--+.+|.+.++.-++.
T Consensus         7 ~~a~eil~~~~~~~~~~------~~~~~~~~--~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~~~   59 (229)
T 3buu_A            7 VTAQSILEKADEIRFPQ------DSFQVNVA--IRTA---APDH----------------AEDLYRYQVLSKGNENSIVM   59 (229)
T ss_dssp             CCHHHHHHHHHHHHSCS------SCEEEEEE--EEEE---ETTE----------------ECCCEEEEEEEETTTEEEEE
T ss_pred             CCHHHHHHHHHhhccCC------CCeEEEEE--EEEE---cCCC----------------ceEEEEEEEEecCCceEEEE
Confidence            36888999999987753      34444433  3321   1110                01122356788888776665


Q ss_pred             EE----eeCeeeeecCCCceeeecCCCCcCcccCCCCch--h----hhhhcCCCchhhhhccccceeeeeeecCCcceeE
Q 016836          165 LV----VGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRP--L----RRALQGLDPIAVASVFSTAQYVGEKRISDIDCFV  234 (381)
Q Consensus       165 Lv----V~G~KV~AGsdGkvaWR~Tpw~gsHAakGp~RP--L----RR~lQGLDPr~tA~lF~~A~ciGEk~i~gedCFi  234 (381)
                      +.    +.|..+..  +|+-+|--.|-+..- -+=++.+  +    -.-+.++++   + =.-+...+|++.|+|.+|++
T Consensus        60 ~~~P~~~~g~~~l~--~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~---~-~~y~~~l~g~~~v~g~~~~v  132 (229)
T 3buu_A           60 ITEPASERGQAILM--KGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANF---T-GDYHPQLLRNESIDDEDYYV  132 (229)
T ss_dssp             EEESTTTTTCEEEE--ETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCS---B-TTEEEEEEEEEEETTEEEEE
T ss_pred             EeCChhhcCeEEee--cCCceEEECCCCCce-EEccCcccccccccccccccCCc---c-ccCceEEeeeeeeCCeeEEE
Confidence            54    45666663  899999999876542 1111111  0    111122221   0 11234789999999999999


Q ss_pred             EEeccCchhhcccCCCCceEEEeeeecccccccceeEEeecceeeeecCCCCCCeEEeeccccccccccccCceeeecCC
Q 016836          235 LKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSG  314 (381)
Q Consensus       235 Lkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDs~Ltriqs~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G  314 (381)
                      |++.+....   +.     .=+..  =|++++|+|+++.|-  +-    ..  .--|++..   ..+|..+||+.+++.-
T Consensus       133 l~~~pk~~~---~~-----y~k~~--lwiD~~t~~p~k~~~--~d----~~--G~l~k~~~---~~~~~~~~g~~~~~~~  191 (229)
T 3buu_A          133 LELTGIDRS---VT-----YQKVL--LWVNQSNFRPYKAEF--YS----VS--GRLLKTSR---YENFDNILGEMRPTRI  191 (229)
T ss_dssp             EEEEESSTT---SS-----CSEEE--EEEETTTCCEEEEEE--EC----TT--SCEEEEEE---EEEEEEETTEEEEEEE
T ss_pred             EEEEecCCC---Cc-----eEEEE--EEEECCCCcEEEEEE--Ec----CC--CCEEEEEE---eeccEEECCEEEeEEE
Confidence            999876442   11     11111  267899999988864  21    12  23456433   5677778877665431


Q ss_pred             cceEEEEeeccccccCccccceeeeeeeeeeecccCCCCCcccCCCc
Q 016836          315 QSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPK  361 (381)
Q Consensus       315 ~t~vtl~RfGe~~~~~~~~TrMEE~WtIeeV~FNV~GLS~DcFiPP~  361 (381)
                             .+-+....++ .|.|+    +.++.||  +|+-+.|-|..
T Consensus       192 -------~~~d~~~~g~-~t~~~----~~~~~~~--~l~~~~Ft~~~  224 (229)
T 3buu_A          192 -------IMEDALKSGE-VSVLD----YSDMKLR--DLPDKIFTKDY  224 (229)
T ss_dssp             -------EEEESSSSCC-EEEEE----EEEEEEC--CCCGGGSSTGG
T ss_pred             -------EEEeCcCCCC-EEEEE----EeeeEeC--CCChHhCCHHH
Confidence                   1111111122 34554    6689998  89888886643



>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00