Citrus Sinensis ID: 016836
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 381 | ||||||
| 224088152 | 360 | predicted protein [Populus trichocarpa] | 0.942 | 0.997 | 0.771 | 1e-168 | |
| 297739785 | 660 | unnamed protein product [Vitis vinifera] | 0.944 | 0.545 | 0.755 | 1e-165 | |
| 225441559 | 362 | PREDICTED: uncharacterized protein LOC10 | 0.944 | 0.994 | 0.755 | 1e-165 | |
| 356500391 | 361 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 0.980 | 0.703 | 1e-151 | |
| 356570933 | 353 | PREDICTED: uncharacterized protein LOC10 | 0.913 | 0.985 | 0.667 | 1e-143 | |
| 356533085 | 385 | PREDICTED: uncharacterized protein LOC10 | 0.918 | 0.909 | 0.694 | 1e-143 | |
| 449437546 | 365 | PREDICTED: uncharacterized protein LOC10 | 0.950 | 0.991 | 0.669 | 1e-140 | |
| 224139938 | 313 | predicted protein [Populus trichocarpa] | 0.821 | 1.0 | 0.669 | 1e-138 | |
| 297806679 | 368 | hypothetical protein ARALYDRAFT_908591 [ | 0.934 | 0.967 | 0.635 | 1e-132 | |
| 15240096 | 368 | uncharacterized protein [Arabidopsis tha | 0.934 | 0.967 | 0.627 | 1e-131 |
| >gi|224088152|ref|XP_002308345.1| predicted protein [Populus trichocarpa] gi|222854321|gb|EEE91868.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/381 (77%), Positives = 325/381 (85%), Gaps = 22/381 (5%)
Query: 1 MSRLAPLSEEPINEEEQHSNSSNGSNNTKYSSKKGLSWKHWLKNHLSLVFFINKKSDLKT 60
MSRLAPLSEEPINE+E++S T S KKG SWK+WLK H LVF NKKSDLK
Sbjct: 1 MSRLAPLSEEPINEDEEYS--------TNCSKKKGYSWKNWLKTHFYLVF--NKKSDLKV 50
Query: 61 LLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGM 120
LLSVLGCPLFPV + K P+N+V SSAQYIIQHF+AATGCRKL+G VKN+FATGKVTM M
Sbjct: 51 LLSVLGCPLFPVSIHSKLPINEVSSSAQYIIQHFSAATGCRKLQGEVKNLFATGKVTMAM 110
Query: 121 GDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNF 180
D+ GGS P+AGA V+EKGCFVMWQM PNKWLIELVV GHKVVAGSDGN
Sbjct: 111 VDELGGS----PMAGATT------VAEKGCFVMWQMAPNKWLIELVVDGHKVVAGSDGNV 160
Query: 181 AWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAAN 240
AWRHTPWL SHAAKG VRPLRRALQGLDP+A+++VFS AQY+GEKR+S DCFVLKL+A+
Sbjct: 161 AWRHTPWLASHAAKGGVRPLRRALQGLDPMAISAVFSPAQYMGEKRVSGTDCFVLKLSAD 220
Query: 241 QTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIE 300
Q DLA RSDSTAEMIKH+IFGYFSQRSGLLV+LEDSYLTRIQSPGT PTYWETTMATKIE
Sbjct: 221 QADLAARSDSTAEMIKHIIFGYFSQRSGLLVHLEDSYLTRIQSPGTYPTYWETTMATKIE 280
Query: 301 DYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPP 360
DYR +EGVMIAH GQSSV+ITRFGD+LK+GLSITRMEETWTIDDLAFNV GLS+DCFIPP
Sbjct: 281 DYRIVEGVMIAHGGQSSVMITRFGDSLKSGLSITRMEETWTIDDLAFNVPGLSMDCFIPP 340
Query: 361 KEVQKDSYPVDENLDWRSPLR 381
+E+QKD YP +ENLDWRSPL
Sbjct: 341 EEMQKD-YP-EENLDWRSPLH 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739785|emb|CBI29967.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|225441559|ref|XP_002281244.1| PREDICTED: uncharacterized protein LOC100267519 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356500391|ref|XP_003519015.1| PREDICTED: uncharacterized protein LOC100801654 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356570933|ref|XP_003553637.1| PREDICTED: uncharacterized protein LOC100800778 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356533085|ref|XP_003535099.1| PREDICTED: uncharacterized protein LOC100800198 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449437546|ref|XP_004136553.1| PREDICTED: uncharacterized protein LOC101217417 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224139938|ref|XP_002323349.1| predicted protein [Populus trichocarpa] gi|222867979|gb|EEF05110.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297806679|ref|XP_002871223.1| hypothetical protein ARALYDRAFT_908591 [Arabidopsis lyrata subsp. lyrata] gi|297317060|gb|EFH47482.1| hypothetical protein ARALYDRAFT_908591 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15240096|ref|NP_196279.1| uncharacterized protein [Arabidopsis thaliana] gi|13899059|gb|AAK48951.1|AF370524_1 Unknown protein [Arabidopsis thaliana] gi|10178117|dbj|BAB11410.1| unnamed protein product [Arabidopsis thaliana] gi|20148283|gb|AAM10032.1| unknown protein [Arabidopsis thaliana] gi|332003659|gb|AED91042.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 381 | ||||||
| TAIR|locus:2144128 | 368 | AT5G06610 "AT5G06610" [Arabido | 0.934 | 0.967 | 0.621 | 4.6e-121 | |
| TAIR|locus:2101510 | 485 | AT3G19540 "AT3G19540" [Arabido | 0.916 | 0.719 | 0.450 | 4.5e-82 | |
| TAIR|locus:2199191 | 433 | AT1G27690 "AT1G27690" [Arabido | 0.931 | 0.819 | 0.455 | 2e-81 | |
| TAIR|locus:2206425 | 417 | AT1G79420 "AT1G79420" [Arabido | 0.832 | 0.760 | 0.477 | 1.4e-78 | |
| TAIR|locus:2007268 | 494 | AT1G49840 "AT1G49840" [Arabido | 0.916 | 0.706 | 0.442 | 4.8e-78 | |
| TAIR|locus:2166414 | 439 | AT5G05840 "AT5G05840" [Arabido | 0.839 | 0.728 | 0.423 | 2.4e-69 | |
| TAIR|locus:2078946 | 438 | AT3G55720 "AT3G55720" [Arabido | 0.737 | 0.641 | 0.414 | 3e-53 | |
| TAIR|locus:2173634 | 370 | AT5G66740 "AT5G66740" [Arabido | 0.905 | 0.932 | 0.362 | 2.1e-52 | |
| TAIR|locus:2025207 | 395 | AT1G75160 "AT1G75160" [Arabido | 0.808 | 0.779 | 0.380 | 2.4e-51 |
| TAIR|locus:2144128 AT5G06610 "AT5G06610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
Identities = 232/373 (62%), Positives = 277/373 (74%)
Query: 1 MSRLAPLSEEPINEEEQHSNSSNGSNNTKYSSKKGLSWKHWLKNHLSLVFFINKKSDLKT 60
M RLAPL EEPI+EE+Q +T+ SK SWK W+K L + F KK D+K
Sbjct: 1 MQRLAPLMEEPIDEEDQEEERGGRKGSTR--SK---SWKKWIKTQLQFIVF-PKKPDMKL 54
Query: 61 LLSVLGCPLFPVPLLPKQPLNQVCSSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGM 120
LLSV+GCPLFPVP L K L QV SSAQYIIQ F AATGC+KL G +KN F TGK+TM M
Sbjct: 55 LLSVMGCPLFPVPPLSKISLQQVSSSAQYIIQQFAAATGCKKLAGEIKNTFVTGKITMTM 114
Query: 121 GDDFXXXXXXXXXXXXXXXXXXXXXXEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNF 180
D KGCFVMWQM+P KWLIELV GGHKV AGSDG
Sbjct: 115 VSDINSSTAVSSASSVS---------HKGCFVMWQMLPEKWLIELVGGGHKVSAGSDGEI 165
Query: 181 AWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAAN 240
WR+TPWLG HAAKG++RPLRRALQGLDP+ ++SVFS+AQ+VGEK I+ DCF+LKL+ +
Sbjct: 166 TWRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFVGEKEINGKDCFILKLSTD 225
Query: 241 QTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIE 300
Q DL+ RSDSTAEMIKHV FGYFSQ+SGLL+ LEDS LTRIQ PGT PTYWET+M++ +E
Sbjct: 226 QIDLSKRSDSTAEMIKHVAFGYFSQKSGLLICLEDSSLTRIQIPGTVPTYWETSMSSWME 285
Query: 301 DYRAIEG--VMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFI 358
DYRAIEG V+IAHSG++ V+I+RFG+ LK G+S+TRMEE WTIDD+AF+V GLS+DCFI
Sbjct: 286 DYRAIEGSEVVIAHSGKTDVLISRFGETLKGGISVTRMEEKWTIDDVAFDVPGLSVDCFI 345
Query: 359 PPKEVQKDSYPVD 371
PPKE++ D + D
Sbjct: 346 PPKEMKMDFHHQD 358
|
|
| TAIR|locus:2101510 AT3G19540 "AT3G19540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2199191 AT1G27690 "AT1G27690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2206425 AT1G79420 "AT1G79420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2007268 AT1G49840 "AT1G49840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2166414 AT5G05840 "AT5G05840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2078946 AT3G55720 "AT3G55720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2173634 AT5G66740 "AT5G66740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2025207 AT1G75160 "AT1G75160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| grail3.0030006902 | hypothetical protein (360 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 381 | |||
| pfam04788 | 243 | pfam04788, DUF620, Protein of unknown function (DU | 1e-132 |
| >gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620) | Back alignment and domain information |
|---|
Score = 378 bits (972), Expect = e-132
Identities = 152/250 (60%), Positives = 180/250 (72%), Gaps = 8/250 (3%)
Query: 111 FATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGH 170
+A GKV M + G+ SV GG E G FV+WQM P+ W +ELVVGG
Sbjct: 2 YAMGKVKMIASEFEIGNGKSVRRNS-------GGSGESGGFVLWQMKPDMWYVELVVGGS 54
Query: 171 KVVAGSDGNFAWRHTPWLGSHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDI 230
KV AGSDG WRHTPWLG+HAAKG VRPLRRALQGLDP AS+F+ AQ VGEKR+
Sbjct: 55 KVSAGSDGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASLFANAQCVGEKRVDGE 114
Query: 231 DCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTY 290
DCFVLKL A+ L+ RSD AE+I+H +FGYFSQRSGLLV LEDS+LTRIQ+PG Y
Sbjct: 115 DCFVLKLDADPAALSARSDGPAEVIRHTLFGYFSQRSGLLVRLEDSHLTRIQTPGADAVY 174
Query: 291 WETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVA 350
WETT+ + + DYRA++GVMIAHSG+S V + RFG++ + S TRMEE WTIDD+AFNV
Sbjct: 175 WETTIESSLGDYRAVDGVMIAHSGRSVVTLFRFGEDSGSH-SRTRMEEAWTIDDVAFNVP 233
Query: 351 GLSLDCFIPP 360
GLS D FIPP
Sbjct: 234 GLSPDSFIPP 243
|
Family of uncharacterized proteins. Length = 243 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 381 | |||
| PF04788 | 245 | DUF620: Protein of unknown function (DUF620); Inte | 100.0 |
| >PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-140 Score=977.67 Aligned_cols=243 Identities=63% Similarity=1.059 Sum_probs=234.1
Q ss_pred eEEecceeeeeecccCCCCCcccccccCccCCCCCccccceEEEeeecCCceEEEEEeeCeeeeecCCCceeeecCCCCc
Q 016836 110 IFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIELVVGGHKVVAGSDGNFAWRHTPWLG 189 (381)
Q Consensus 110 myA~GkVrM~~~sE~~~~~~~v~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~g 189 (381)
|||||||||++ +||+++++++++ .+.++.+|+||||||||+|||||||||||||||+||||||||||||||||
T Consensus 1 mya~GkVrM~~-se~~~~~~~~~~------~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g 73 (245)
T PF04788_consen 1 MYAMGKVRMAA-SEFEGGSGSVTK------VGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQG 73 (245)
T ss_pred CceeeeEEEEE-EeeccCCccccc------cccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCcccc
Confidence 89999999999 688887666542 24667899999999999999999999999999999999999999999999
Q ss_pred CcccCCCCchhhhhhcCCCchhhhhccccceeeeeeecCCcceeEEEeccCchhhcccCCCCceEEEeeeecccccccce
Q 016836 190 SHAAKGSVRPLRRALQGLDPIAVASVFSTAQYVGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGL 269 (381)
Q Consensus 190 sHAakGp~RPLRR~lQGLDPr~tA~lF~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGL 269 (381)
+||||||||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++||||||||||
T Consensus 74 ~HAakGp~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGL 153 (245)
T PF04788_consen 74 SHAAKGPPRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGL 153 (245)
T ss_pred chhhcCCCchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecceeeeecC--CCCCCeEEeeccccccccccccCceeeecCCcceEEEEeeccccccCccccceeeeeeeeeeec
Q 016836 270 LVYLEDSYLTRIQS--PGTQPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEETWTIDDLAF 347 (381)
Q Consensus 270 Lv~lEDs~Ltriqs--~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~RfGe~~~~~~~~TrMEE~WtIeeV~F 347 (381)
|||||||||||||+ +++++|||||||||+|+|||+||||||||+|||+||||||||++++| ++|||||+|+||||||
T Consensus 154 Lv~lEDS~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h-~rTrmEE~W~Ieev~F 232 (245)
T PF04788_consen 154 LVQLEDSHLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSH-SRTRMEETWTIEEVDF 232 (245)
T ss_pred eeeeecceeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccC-ceeeEeeeeEeeeEEe
Confidence 99999999999999 88999999999999999999999999999999999999999998755 8899999999999999
Q ss_pred ccCCCCCcccCCC
Q 016836 348 NVAGLSLDCFIPP 360 (381)
Q Consensus 348 NV~GLS~DcFiPP 360 (381)
|||||||||||||
T Consensus 233 NV~GLS~DcFiPP 245 (245)
T PF04788_consen 233 NVPGLSMDCFIPP 245 (245)
T ss_pred ccCCcchhcccCC
Confidence 9999999999999
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 381 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 4e-04
Identities = 53/355 (14%), Positives = 105/355 (29%), Gaps = 109/355 (30%)
Query: 85 SSAQY----IIQHFTAA----TGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVAGA 136
QY I+ F A C+ ++ K+I + ++ D S A +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-----DHIIMS----KDAVS 62
Query: 137 GASASLGGVSEKGC-----FVMWQMVPN-KWLIELVVGGHKVVAGSDGNFAWRHTP-WLG 189
G + K FV + N K+L+ + + + + + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 190 SHA-AKGSV-RP-----LRRALQGLDP---IAV------------ASV---------FST 218
+ AK +V R LR+AL L P + + V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 219 AQY---VGEKRISD-----IDCFVLKLAANQTDLADRSDST---AEMIKHVIFGYFSQRS 267
+ + + + + ++ N T +D S + I+ + +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 268 ---GLLVYLEDSYLTRIQSPGTQPTYWE----------TTMATKIEDYRAIEGVMIAHSG 314
LLV L + +Q+ W TT ++ D+ + A +
Sbjct: 243 YENCLLV-LLN-----VQNAKA----WNAFNLSCKILLTTRFKQVTDF-----LSAATTT 287
Query: 315 QSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPKEVQKDSYP 369
S+ D+ L+ +E ++ L P+EV + P
Sbjct: 288 HISL------DHHSMTLT---PDEVKSL--LL-KYLDCRPQDL--PREVLTTN-P 327
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 381 | |||
| 3buu_A | 229 | Uncharacterized LOLA superfamily protein NE2245; P | 97.78 | |
| 3bk5_A | 237 | Putative outer membrane lipoprotein-sorting prote; | 97.5 |
| >3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00082 Score=58.73 Aligned_cols=208 Identities=14% Similarity=0.140 Sum_probs=117.4
Q ss_pred chhHHHHHhHhHhcCchhhcccceeeEEecceeeeeecccCCCCCcccccccCccCCCCCccccceEEEeeecCCceEEE
Q 016836 85 SSAQYIIQHFTAATGCRKLEGRVKNIFATGKVTMGMGDDFGGSAGSVPVAGAGASASLGGVSEKGCFVMWQMVPNKWLIE 164 (381)
Q Consensus 85 SsAqYIvqQy~AAtGg~k~~~~v~smyA~GkVrM~~~sE~~~~~~~v~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~E 164 (381)
-+|+=|+++..++.++. ++..+..+ |... ..++ ....--+.+|.+.++.-++.
T Consensus 7 ~~a~eil~~~~~~~~~~------~~~~~~~~--~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~~~ 59 (229)
T 3buu_A 7 VTAQSILEKADEIRFPQ------DSFQVNVA--IRTA---APDH----------------AEDLYRYQVLSKGNENSIVM 59 (229)
T ss_dssp CCHHHHHHHHHHHHSCS------SCEEEEEE--EEEE---ETTE----------------ECCCEEEEEEEETTTEEEEE
T ss_pred CCHHHHHHHHHhhccCC------CCeEEEEE--EEEE---cCCC----------------ceEEEEEEEEecCCceEEEE
Confidence 36888999999987753 34444433 3321 1110 01122356788888776665
Q ss_pred EE----eeCeeeeecCCCceeeecCCCCcCcccCCCCch--h----hhhhcCCCchhhhhccccceeeeeeecCCcceeE
Q 016836 165 LV----VGGHKVVAGSDGNFAWRHTPWLGSHAAKGSVRP--L----RRALQGLDPIAVASVFSTAQYVGEKRISDIDCFV 234 (381)
Q Consensus 165 Lv----V~G~KV~AGsdGkvaWR~Tpw~gsHAakGp~RP--L----RR~lQGLDPr~tA~lF~~A~ciGEk~i~gedCFi 234 (381)
+. +.|..+.. +|+-+|--.|-+..- -+=++.+ + -.-+.++++ + =.-+...+|++.|+|.+|++
T Consensus 60 ~~~P~~~~g~~~l~--~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~---~-~~y~~~l~g~~~v~g~~~~v 132 (229)
T 3buu_A 60 ITEPASERGQAILM--KGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANF---T-GDYHPQLLRNESIDDEDYYV 132 (229)
T ss_dssp EEESTTTTTCEEEE--ETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCS---B-TTEEEEEEEEEEETTEEEEE
T ss_pred EeCChhhcCeEEee--cCCceEEECCCCCce-EEccCcccccccccccccccCCc---c-ccCceEEeeeeeeCCeeEEE
Confidence 54 45666663 899999999876542 1111111 0 111122221 0 11234789999999999999
Q ss_pred EEeccCchhhcccCCCCceEEEeeeecccccccceeEEeecceeeeecCCCCCCeEEeeccccccccccccCceeeecCC
Q 016836 235 LKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGTQPTYWETTMATKIEDYRAIEGVMIAHSG 314 (381)
Q Consensus 235 Lkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDs~Ltriqs~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G 314 (381)
|++.+.... +. .=+.. =|++++|+|+++.|- +- .. .--|++.. ..+|..+||+.+++.-
T Consensus 133 l~~~pk~~~---~~-----y~k~~--lwiD~~t~~p~k~~~--~d----~~--G~l~k~~~---~~~~~~~~g~~~~~~~ 191 (229)
T 3buu_A 133 LELTGIDRS---VT-----YQKVL--LWVNQSNFRPYKAEF--YS----VS--GRLLKTSR---YENFDNILGEMRPTRI 191 (229)
T ss_dssp EEEEESSTT---SS-----CSEEE--EEEETTTCCEEEEEE--EC----TT--SCEEEEEE---EEEEEEETTEEEEEEE
T ss_pred EEEEecCCC---Cc-----eEEEE--EEEECCCCcEEEEEE--Ec----CC--CCEEEEEE---eeccEEECCEEEeEEE
Confidence 999876442 11 11111 267899999988864 21 12 23456433 5677778877665431
Q ss_pred cceEEEEeeccccccCccccceeeeeeeeeeecccCCCCCcccCCCc
Q 016836 315 QSSVIITRFGDNLKAGLSITRMEETWTIDDLAFNVAGLSLDCFIPPK 361 (381)
Q Consensus 315 ~t~vtl~RfGe~~~~~~~~TrMEE~WtIeeV~FNV~GLS~DcFiPP~ 361 (381)
.+-+....++ .|.|+ +.++.|| +|+-+.|-|..
T Consensus 192 -------~~~d~~~~g~-~t~~~----~~~~~~~--~l~~~~Ft~~~ 224 (229)
T 3buu_A 192 -------IMEDALKSGE-VSVLD----YSDMKLR--DLPDKIFTKDY 224 (229)
T ss_dssp -------EEEESSSSCC-EEEEE----EEEEEEC--CCCGGGSSTGG
T ss_pred -------EEEeCcCCCC-EEEEE----EeeeEeC--CCChHhCCHHH
Confidence 1111111122 34554 6689998 89888886643
|
| >3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00