Citrus Sinensis ID: 016862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPPPSPRTESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSKENSLERVDPYPTNAVDPDLGWITELVNEAK
Secondary Structure (PSIPRED)
cccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHcccEHHcccHHHHcccccccccccccEEEEEEcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
mmlgeahrpnptilvppwpqlpddptadnifsphslnsnangspeysnlyhipeTYAALHrylpsndpdldsdsdmsgldpdspvdayscdhfrmYEFKvrkcargrshdwtecpyahpgekarrrdprkyhysgtacpdfrkgsckkgdacefAHGVFecwlhparyrtqpckdgggckrrvcffahtpdqlrilpqqsprsasasdspscaktlpflsspesaspppsprtespmshslsrslgTSSINEMMASFRNLqlgkvkslpsswniqvggvggspgygsprgsmlrpgfcslpstptrtptrpgigypdifntcweeeeeepvmERVESGRDLRAKMFERLSKenslervdpyptnavdpdlgWITELVNEAK
Flexible Loop (DISEMBL)
mmlgeahrpnptilvppwpQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKcargrshdwtecpyahpgekarrrdprkYHYSgtacpdfrkgSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPppsprtespmshSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLRPGFCSLPstptrtptrpgigyPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSkenslervdpyptnavdpdlgWITELVNEAK
Low Complexity Region (SEG)
MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALHRYlpsndpdldsdsdmsgldpdspVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILpqqsprsasasdspsCAKTLpflsspesaspppsprtespmshslsrslgtssINEMMASFRNLQLGKVKSLPSSWNIQvggvggspgygsprgsMLRPGFCSLpstptrtptrpGIGYPDIFNTCWeeeeeepvmerveSGRDLRAKMFERLSKENSLERVDPYPTNAVDPDLGWITELVNEAK
Disordered region (IsUnstruct)
***********************************************NLYHIPETYAALHRYL**********************DAYSCDHFRMYEFKVRKCARGRSHDWTECPYA*************YHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLR****************************************************************************SWNIQVGGV********************************GIGYPDIFNTCWE******************************************DPDLGWITEL*****
Disordered Region (DISOPRED)
*******RPNPTILVPPWPQ*****************************************************************DAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQL********************************************************************************************************************************************************************************LGWITELVNE**
Disordered Region (DISEMBL)
********PNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHP***********YHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQ***************KTLPFL*************************LGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEE**********ESGRDLRAKMFERLSKENSLERVDPYPTNAVDPDLGWITELVNEAK
Disordered Region (DISPRO)
*******RPNPTILVPPWPQLPD*****N**S************EYSNLYHIPETYAALHRYLPSND******SDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEK*RRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILP*****************************************************************************Q*GGVGGSPGYGSPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSKENSL***********DPDLGWI********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPPPSPRTESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSKENSLERVDPYPTNAVDPDLGWITELVNEAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
O82199	359	Zinc finger CCCH domain-c	yes	no	0.918	0.974	0.612	1e-115
Q9M0G2	356	Zinc finger CCCH domain-c	no	no	0.908	0.971	0.598	1e-115
Q9FU27	386	Zinc finger CCCH domain-c	yes	no	0.921	0.909	0.458	6e-81
Q6L4N4	402	Zinc finger CCCH domain-c	no	no	0.923	0.875	0.447	3e-77
O82307	315	Zinc finger CCCH domain-c	no	no	0.808	0.977	0.495	1e-75
Q9ZWA1	393	Zinc finger CCCH domain-c	no	no	0.343	0.333	0.647	1e-51
P93755	716	Zinc finger CCCH domain-c	no	no	0.419	0.223	0.587	2e-51
Q9LXV4	706	Zinc finger CCCH domain-c	no	no	0.477	0.257	0.529	2e-51
Q10EL1	764	Zinc finger CCCH domain-c	no	no	0.304	0.151	0.706	2e-49
Q9FKW2	381	Zinc finger CCCH domain-c	no	no	0.338	0.338	0.628	7e-49

>sp|O82199|C3H20_ARATH Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1

 Score =  415 bits (1067), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/385 (61%), Positives = 284/385 (73%), Gaps = 35/385 (9%)

Query: 1   MMLGEAHRP-NPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAAL 59
           MM+GE+HR  NPT+ +PPWP L +D T  +I+          GSP+  +   + E  A L
Sbjct: 1   MMIGESHRGFNPTVHIPPWP-LSEDLTVSDIY----------GSPDGGS--SMMEALAEL 47

Query: 60  HRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHP 119
            RYLPSN+PD DSD D+SG  PDSP+DAY+CDHFRMYEFKVR+CARGRSHDWTECPYAHP
Sbjct: 48  QRYLPSNEPDPDSDPDLSG--PDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHP 105

Query: 120 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGC 179
           GEKARRRDPRK+HYSGTACP+FRKG CK+GDACEF+HGVFECWLHPARYRTQPCKDGG C
Sbjct: 106 GEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNC 165

Query: 180 KRRVCFFAHTPDQLRILPQQSPRSASASD--SPSCAKTLPFLSSPESASPPPSPRTESPM 237
           +RRVCFFAH+PDQ+R+LP QSP    + D  SP+  +   F  SP S SPP SPR +S  
Sbjct: 166 RRRVCFFAHSPDQIRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDS 225

Query: 238 SHSLSRSLGTSSI-NEMMASFRNLQLGKVK-SLPSSWNIQVGGVGGSPGYGSPRGSMLRP 295
           S SL      S++ N+++AS RNLQL KVK SL SS+N Q+GG G   G+GSPRGS+L P
Sbjct: 226 SCSLLSRSLGSNLGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGS--GFGSPRGSVLGP 283

Query: 296 GFCSLPSTPTRTPTRPGIGYPDIFNTCWEEE-EEEPVMERVESGRDLRAKMFERLSKENS 354
           GF SLP+    TPTRPG      F   WE   EEEP MERVESGR+LRA++FE+LSKEN 
Sbjct: 284 GFRSLPT----TPTRPG------FMNIWENGLEEEPAMERVESGRELRAQLFEKLSKENC 333

Query: 355 LERVDPYPTNAVD--PDLGWITELV 377
           + R++P P       PD+GW+++LV
Sbjct: 334 MGRIEPDPDQGAGDTPDVGWVSDLV 358

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0G2|C3H49_ARATH Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/386 (59%), Positives = 270/386 (69%), Gaps = 40/386 (10%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
           MM+GE  R  PT+ +PPWP L ++ T    FSP         SP+ S L    E  A L 
Sbjct: 1   MMIGETRRTYPTVEIPPWPVL-EELTTSEFFSP------VMNSPDCSML----EALAGLQ 49

Query: 61  RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
           RYLPSN+PD +S  D+ G  PDSP+DAYSCDHFRMY+FKVR+CARGRSHDWTECPYAHPG
Sbjct: 50  RYLPSNEPDPESYPDLLG--PDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPG 107

Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
           EKARRRDPRKYHYSGTACPDFRKG CKKGD+CEFAHGVFECWLHPARYRTQPCKDGG C 
Sbjct: 108 EKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCL 167

Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASD--SPSCAKTLPFLSSPESASPPPSPRTE---S 235
           R++CFFAH+PDQLR L  +SP    + D  SP  A+      SP S SPP SPR +   S
Sbjct: 168 RKICFFAHSPDQLRFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESS 227

Query: 236 PMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLRP 295
           PM+ SLSRSLG+ SIN+++ SFRNLQ   VKS P +  +         G+GSPRGS+L P
Sbjct: 228 PMTQSLSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPLF--------GFGSPRGSILGP 279

Query: 296 GFCSLPSTPTRTPTRPGIGYPDIFNTCWEEE-EEEPVMER-VESGRDLRAKMFERLSKEN 353
           GF SLP+TPTR       G  DI    WE   EEEPVMER VESGR+LR KM E+L KEN
Sbjct: 280 GFQSLPTTPTRP------GNLDI----WEYGLEEEPVMERVVESGRELREKMREKLHKEN 329

Query: 354 SLERV--DPYPTNAVDPDLGWITELV 377
            ++RV  DP       PD+GW+++L+
Sbjct: 330 CMDRVAQDPDQNLGEAPDVGWVSDLL 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1

 Score =  301 bits (770), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 189/412 (45%), Positives = 235/412 (57%), Gaps = 61/412 (14%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
           MM+GE         VPPW  LP       +     L     G  E +     P   AAL 
Sbjct: 2   MMMGEG-----VSSVPPWSHLP-------VSGVDVLGGGGGGGDEMT-----PYVIAALR 44

Query: 61  RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
            YLP+ND  + +D +       + VDAY+CD FRMYEFKVR+CARGRSHDWTECP+AHPG
Sbjct: 45  DYLPANDVGVGADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPG 104

Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
           EKARRRDPRKYHYSGTACPDFRKG CK+GDACE+AHGVFECWLHPARYRTQPCKDG  C+
Sbjct: 105 EKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACR 164

Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPPPSPRTESPMSHS 240
           RRVCFFAHTPDQLR+LP Q     S + SP       +  SP       S  T++ MS S
Sbjct: 165 RRVCFFAHTPDQLRVLPAQQSSPRSVASSPLAES---YDGSPLRRQAFESYLTKTIMSSS 221

Query: 241 LSRSL----------------------------GTSS-INEMMASFRNLQLGKVKSLPS- 270
            + +L                            G  S +N+++ASFR L+L KVKS PS 
Sbjct: 222 PTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSG 281

Query: 271 SWNIQVGGVGGSPGYGSPRGSMLRPGFCSLPSTP---TRTPTRPGIGYPDIFNTCWEEEE 327
            W+        S  YGSP+ +    G  SLP+TP   T T T      P++         
Sbjct: 282 GWSYP----SSSAVYGSPKAAT---GLYSLPTTPLASTATVTTASSFMPNLEPLDLGLIG 334

Query: 328 EEPVMERVESGRDLRAKMFERLSKENSLE-RVDPYPTNAVDPDLGWITELVN 378
           +E  ++RVESGR LR K+FERLS++ ++      + T  V  D+ W+++L+N
Sbjct: 335 DEEPVQRVESGRALREKVFERLSRDGAISGDATAFATAGVGLDVDWVSDLIN 386

Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1

 Score =  289 bits (739), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 191/427 (44%), Positives = 232/427 (54%), Gaps = 75/427 (17%)

Query: 1   MMLGE-AHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANG--SPEYSNLYHIPETYA 57
           MM+GE AH        PPW Q        ++ SP S      G  S   +  YH+ +T  
Sbjct: 2   MMMGEGAH-------APPWQQ--------HVASPVSGVEGGGGRESEVVAAPYHLLDT-- 44

Query: 58  ALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYA 117
            L  YLPSN+     D + +     + VDAY+CD FRMYEFKVR+CARGRSHDWTECP+A
Sbjct: 45  -LRHYLPSNEAAAAEDEEEA-AAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFA 102

Query: 118 HPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGG 177
           HPGEKARRRDPR+Y YSGTACPDFRKG CK+GDACEFAHGVFECWLHPARYRTQPCKDG 
Sbjct: 103 HPGEKARRRDPRRYCYSGTACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGT 162

Query: 178 GCKRRVCFFAHTPDQLRILPQQSPRSASASDSP--SCAKTLPFLSSPESASPPPSPRTES 235
            C+RRVCFFAHTPDQLR+LP   P     S+SP           +SP + S   SP    
Sbjct: 163 ACRRRVCFFAHTPDQLRVLP---PSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQ 219

Query: 236 PMSHSLSRSLGTSS--------------------------------------INEMMASF 257
                L++S+ +SS                                      +N++  S 
Sbjct: 220 AFESYLTKSIMSSSPTSTLVSPPRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSL 279

Query: 258 RNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRG--SMLRPGFCSLPSTPTR----TPTRP 311
           R L+LG  +S PS  +    G      YGSP+   +       SLPSTPTR    T T  
Sbjct: 280 RQLRLGSPRSAPSCASFLPAGY----QYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTTA 335

Query: 312 GIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSKENSLERVDPYPTNAVDPDLG 371
                 +        EEE  MERVESGR LR K+FERLSKE ++          V PD+G
Sbjct: 336 SGATVTVEPLDLGLIEEEQPMERVESGRALREKVFERLSKEATVSTDAAAAAAGVAPDVG 395

Query: 372 WITELVN 378
           W+++L+N
Sbjct: 396 WVSDLIN 402

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82307|C3H23_ARATH Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 179/361 (49%), Positives = 225/361 (62%), Gaps = 53/361 (14%)

Query: 1   MMLGE-AHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIP----ET 55
           MM+GE  +RP+PTI +P W Q+ +DPTA  I SP S + N N   +Y    H P    ++
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQI-NDPTA-TISSPFS-SVNLNSVNDYP---HSPSPYLDS 54

Query: 56  YAALHRYLPSNDPDLDSDSDMSGLDPDSPV-DAYSCDHFRMYEFKVRKCARGRSHDWTEC 114
           +A+L RYLPSN+  L +DSD S  D  SP+ D++S D FR+YEFK+R+CARGRSHDWTEC
Sbjct: 55  FASLFRYLPSNE--LTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTEC 112

Query: 115 PYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCK 174
           P+AHPGEKARRRDPRK+HYSGTACP+FRKGSC++GD+CEF+HGVFECWLHP+RYRTQPCK
Sbjct: 113 PFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCK 172

Query: 175 DGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPPPSPRTE 234
           DG  C+RR+CFFAHT +QLR+LP             S    L F S    A+ P S    
Sbjct: 173 DGTSCRRRICFFAHTTEQLRVLPC------------SLDPDLGFFSG--LATSPTSILVS 218

Query: 235 SPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLR 294
              S        + S  E++AS R +QL                 GG   + SP  S +R
Sbjct: 219 PSFSPPSESPPLSPSTGELIASMRKMQLN----------------GGGCSWSSPMRSAVR 262

Query: 295 PGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSKENS 354
             F S    P +  T P I   +I        EE P ME VESG++LRA+M+ RLS+ENS
Sbjct: 263 LPFSS-SLRPIQAATWPRIREFEI--------EEAPAMEFVESGKELRAEMYARLSRENS 313

Query: 355 L 355
           L
Sbjct: 314 L 314

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 110/142 (77%), Gaps = 11/142 (7%)

Query: 71  DSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRK 130
           DSDSD          D Y+ DHFRM+EFK+R+C R RSHDWT+CP+AHPGEKARRRDPR+
Sbjct: 71  DSDSD----------DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRR 120

Query: 131 YHYSGTACPDFRKG-SCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHT 189
           + YSG  CP+FR+G  C +GD CEFAHGVFECWLHP RYRT+ CKDG  CKR+VCFFAH+
Sbjct: 121 FQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHS 180

Query: 190 PDQLRILPQQSPRSASASDSPS 211
           P QLR+LP ++    SAS SP+
Sbjct: 181 PRQLRVLPPENVSGVSASPSPA 202

Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/165 (58%), Positives = 113/165 (68%), Gaps = 5/165 (3%)

Query: 81  PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
           PD     Y+ D FRMY FKVR C+R  SHDWTECP+ HPGE ARRRDPRK+HYS   CPD
Sbjct: 250 PDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPD 309

Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQS 200
           FRKG+C++GD CE+AHGVFECWLHPA+YRT+ CKDG GC RRVCFFAHTP++LR L   +
Sbjct: 310 FRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRPLYAST 369

Query: 201 ----PRSASASDSPSCAKTLPFLSSPESASPPPSPRTE-SPMSHS 240
               P   S +D  +    LP   S  S   P SP    + MSHS
Sbjct: 370 GSAVPSPRSNADYAAALSLLPGSPSGVSVMSPLSPSAAGNGMSHS 414

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/204 (52%), Positives = 131/204 (64%), Gaps = 22/204 (10%)

Query: 81  PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
           PD     YS D FRM+ FK+R C+R  SHDWTECP+AHPGE ARRRDPRK+HY+   CPD
Sbjct: 246 PDIKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPD 305

Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLR-ILPQQ 199
           F+KGSCK+GD CE+AHGVFECWLHPA+YRT+ CKDG GC RRVCFFAH  ++LR + P  
Sbjct: 306 FKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPLYPST 365

Query: 200 -----SPR-----SASASDSPSCAKTLPFLSSPESA----SPPPSPRTESPMSHSLSRSL 245
                SPR     SAS  D  S    LP   SP +A    +PP SP     M HS   S+
Sbjct: 366 GSGLPSPRASSAVSASTMDMASVLNMLP--GSPSAAQHSFTPPISPSGNGSMPHS---SM 420

Query: 246 G--TSSINEMMASFRNLQLGKVKS 267
           G    +I  +     N+QL +++S
Sbjct: 421 GWPQQNIPALNLPGSNIQLSRLRS 444

Arabidopsis thaliana (taxid: 3702)

>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 92/116 (79%)

Query: 81  PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
           PD     Y+ D FRMY FK+R C+R  SHDWTECP+ HPGE ARRRDPRKYHYS   CPD
Sbjct: 270 PDIKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPD 329

Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
           FRKG C++GD CE+AHGVFECWLHPA+YRT+ CKDG  C RRVCFFAHT D+LR L
Sbjct: 330 FRKGVCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTTDELRPL 385

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FKW2|C3H61_ARATH Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana GN=At5g44260 PE=2 SV=1

 Score =  194 bits (494), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 105/140 (75%), Gaps = 11/140 (7%)

Query: 59  LHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAH 118
           L  Y    D   DSDS+          D Y+ DHFRMYEFK+R+C R RSHDWT+CP++H
Sbjct: 37  LRDYKEQKDYCYDSDSE----------DPYAGDHFRMYEFKIRRCTRSRSHDWTDCPFSH 86

Query: 119 PGEKARRRDPRKYHYSGTACPDF-RKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGG 177
           PGEKARRRDPR++HY+G  CP+F R G C +GD C FAHGVFECWLHP+RYRT+ CKDG 
Sbjct: 87  PGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAHGVFECWLHPSRYRTEACKDGK 146

Query: 178 GCKRRVCFFAHTPDQLRILP 197
            CKR+VCFFAH+P QLR+LP
Sbjct: 147 HCKRKVCFFAHSPRQLRVLP 166

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
147857018	460	hypothetical protein VITISV_013303 [Viti	0.955	0.791	0.657	1e-131
225445023	388	PREDICTED: zinc finger CCCH domain-conta	0.958	0.940	0.655	1e-131
312282727	359	unnamed protein product [Thellungiella h	0.929	0.986	0.65	1e-128
449435812	382	PREDICTED: zinc finger CCCH domain-conta	0.947	0.945	0.614	1e-128
226427137	385	zinc finger protein ZF3 [Cicer arietinum	0.942	0.932	0.623	1e-127
356523868	355	PREDICTED: zinc finger CCCH domain-conta	0.900	0.966	0.629	1e-126
356513195	353	PREDICTED: zinc finger CCCH domain-conta	0.897	0.968	0.628	1e-126
255646789	355	unknown [Glycine max]	0.900	0.966	0.627	1e-125
312282073	365	unnamed protein product [Thellungiella h	0.923	0.964	0.637	1e-124
356520840	359	PREDICTED: zinc finger CCCH domain-conta	0.937	0.994	0.621	1e-124

>gi|147857018|emb|CAN81808.1| hypothetical protein VITISV_013303 [Vitis vinifera]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/400 (65%), Positives = 304/400 (76%), Gaps = 36/400 (9%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIF----SPHSLNSNANGSP----EYSNLYHI 52
           MM+GE+ RPNPT+LVPPWP   DDPT D  F    S  S+NSNAN +     E+S  + +
Sbjct: 41  MMIGESRRPNPTVLVPPWPHF-DDPTVDISFPYPVSGVSVNSNANANGLQGGEHSP-FLL 98

Query: 53  PETYAALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWT 112
            E   AL RYLPSND D+DSDSD+SG + D PVDAYSCDHFRM+EFKVR+CARGRSHDWT
Sbjct: 99  GEALTALQRYLPSNDVDVDSDSDISGREADIPVDAYSCDHFRMFEFKVRRCARGRSHDWT 158

Query: 113 ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQP 172
           ECPYAHPGEKARRRDPRK+HYSGTACPDFRKG+CKKGD+CEFAHGVFECWLHPARYRTQP
Sbjct: 159 ECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQP 218

Query: 173 CKDGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDS-----------PSCAKTLPF--- 218
           CKDG  C+RRVCFFAHT +QLR+LPQQSPR+  + +S            SCAKTLPF   
Sbjct: 219 CKDGPNCRRRVCFFAHTAEQLRVLPQQSPRTPGSVESYDGSPLRQALEASCAKTLPFMSS 278

Query: 219 -LSSPESASPPPSPRTESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVG 277
             S     SPPP     SP++ SLSRSLG++SINEM+AS R LQL KVKS PSSW + +G
Sbjct: 279 PGSVSPPGSPPPESPPMSPITSSLSRSLGSNSINEMVASLRQLQLSKVKSAPSSWCVHMG 338

Query: 278 GVGGSPGYGSPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVES 337
             G   G+GSPR S++RPGFCSLPSTPTR P R G+G+ D+F       EEEP MERVES
Sbjct: 339 SPG---GFGSPRASIIRPGFCSLPSTPTRAPKRHGLGFVDLF-------EEEPAMERVES 388

Query: 338 GRDLRAKMFERLSKENSLERVDPYPTNAVDPDLGWITELV 377
           GRDLRAKMFE+LSKENSL+R DP  + A  PD+GW++EL 
Sbjct: 389 GRDLRAKMFEKLSKENSLDRPDPSASGA-GPDVGWVSELT 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445023|ref|XP_002283114.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like [Vitis vinifera]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/401 (65%), Positives = 304/401 (75%), Gaps = 36/401 (8%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIF----SPHSLNSNANGSP----EYSNLYHI 52
           MM+GE+  PNPT+LVPPWP   DDPT D  F    S  S+NSNAN +     E+S  + +
Sbjct: 1   MMIGESRHPNPTVLVPPWPHF-DDPTVDISFPYPVSGVSVNSNANANGLQGGEHSP-FLL 58

Query: 53  PETYAALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWT 112
            E   AL RYLPSND D+DSDSD+SG + D PVDAYSCDHFRM+EFKVR+CARGRSHDWT
Sbjct: 59  GEALTALQRYLPSNDVDVDSDSDISGREADIPVDAYSCDHFRMFEFKVRRCARGRSHDWT 118

Query: 113 ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQP 172
           ECPYAHPGEKARRRDPRK+HYSGTACPDFRKG+CKKGD+CEFAHGVFECWLHPARYRTQP
Sbjct: 119 ECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQP 178

Query: 173 CKDGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDS-----------PSCAKTLPF--- 218
           CKDG  C+RRVCFFAHT +QLR+LPQQSPR+  + +S            SCAKTLPF   
Sbjct: 179 CKDGPNCRRRVCFFAHTAEQLRVLPQQSPRTPGSVESYDGSPLRQALEASCAKTLPFMSS 238

Query: 219 -LSSPESASPPPSPRTESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVG 277
             S     SPPP     SP++ SLSRSLG++SINEM+AS R LQL KVKS PSSW + +G
Sbjct: 239 PGSVSPPGSPPPESPPMSPITSSLSRSLGSNSINEMVASLRQLQLSKVKSAPSSWCVHMG 298

Query: 278 GVGGSPGYGSPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVES 337
             G   G+GSPR S++RPGFCSLPSTPTR P R G+G+ D+F       EEEP MERVES
Sbjct: 299 SPG---GFGSPRASIIRPGFCSLPSTPTRAPKRHGLGFVDLF-------EEEPAMERVES 348

Query: 338 GRDLRAKMFERLSKENSLERVDPYPTNAVDPDLGWITELVN 378
           GRDLRAKMFE+LSKENSL+R DP  + A  PD+GW++ELV 
Sbjct: 349 GRDLRAKMFEKLSKENSLDRPDPSASGA-GPDVGWVSELVK 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282727|dbj|BAJ34229.1| unnamed protein product [Thellungiella halophila]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/380 (65%), Positives = 284/380 (74%), Gaps = 26/380 (6%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
           MM+GE HR  PT+ +PPWP   DD TA          +  NGSP+  N   + E  AAL 
Sbjct: 1   MMIGETHRAYPTVHIPPWPFF-DDLTA----------AAFNGSPDGGN--SMIEALAALQ 47

Query: 61  RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
            YLPSN+PD DSD D+SG  PDSP+DAYSCDHFRM+EFKVR+CARGRSHDWTECPYAHPG
Sbjct: 48  HYLPSNEPDPDSDPDLSG--PDSPIDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPG 105

Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
           EKARRRDPRKYHYSGTACPDFRKG+C KGD CEF+HGVFECWLHPARYRTQPCKDGG C+
Sbjct: 106 EKARRRDPRKYHYSGTACPDFRKGNCPKGDTCEFSHGVFECWLHPARYRTQPCKDGGHCR 165

Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASDSPS-CAKTLPFLSSPESASPPPSPRTESPMSH 239
           RRVCFFAH+PDQLR+LP QSP    + D  S   +   F  SP S SPP SPR +S  S 
Sbjct: 166 RRVCFFAHSPDQLRVLPNQSPDRVDSFDGVSPIRRAFQFSISPASGSPPVSPRADSESSA 225

Query: 240 SLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLRPGFCS 299
            LSRSLG+ S+N+++AS RNLQL KVKSLPSS N    G  GS G+GSPRGS+L PGF S
Sbjct: 226 LLSRSLGSGSVNDVVASLRNLQLNKVKSLPSSCNNHQIGCYGS-GFGSPRGSVLGPGFRS 284

Query: 300 LPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSKENSLERV- 358
           LP+TPTR  T    GY DI++      EEEP MERVESGR+LRAKMFE+LSKEN ++RV 
Sbjct: 285 LPNTPTRLDT----GYTDIWDNGL---EEEPAMERVESGRELRAKMFEKLSKENCMDRVD 337

Query: 359 -DPYPTNAVDPDLGWITELV 377
            DPY  +   PD+GW++ELV
Sbjct: 338 PDPYQGSGEAPDVGWVSELV 357

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435812|ref|XP_004135688.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like [Cucumis sativus]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/399 (61%), Positives = 295/399 (73%), Gaps = 38/399 (9%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSL-------NSNANGSPEYSNLYHIP 53
           M++ E HRP P + + P   +P++PTA     P+ L       + NANG  +YS  Y++ 
Sbjct: 1   MLISERHRPGPVVHITPL-TIPEEPTATETRFPYPLSGISVSSDGNANGG-DYSP-YYLQ 57

Query: 54  ETYAALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTE 113
           E  AAL RY  +N+ +++SDS++SG + D P++AYSCDHFR++EFKVRKC RGRSHDWTE
Sbjct: 58  EALAALQRY--TNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTE 115

Query: 114 CPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPC 173
           CPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGD+CEFAHGVFECWLHPARYRTQPC
Sbjct: 116 CPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPC 175

Query: 174 KDGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDS-----------PSCAKTLPFLSSP 222
           KDG  C+RRVCFFAHTP+QLR+LPQQSPRSA++ DS            SC+KTLPFLSSP
Sbjct: 176 KDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPDSYDESPLRQSVDGSCSKTLPFLSSP 235

Query: 223 ESASPPPSPRTE---SPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGV 279
            S SP  +P      SPM+ SL RSLG++SINEM+AS RNL L KVKSLPSSWN+Q+   
Sbjct: 236 VSVSPTATPVDSPPLSPMTRSLGRSLGSTSINEMVASLRNLHLSKVKSLPSSWNVQI--- 292

Query: 280 GGSPGYGSPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGR 339
            GSPGY     S +  GFCSLP+TPTR PT  G+G  D     +   EEEPVMERVESGR
Sbjct: 293 -GSPGY----PSRVCHGFCSLPTTPTRAPTGHGVGLLDFTEHGF---EEEPVMERVESGR 344

Query: 340 DLRAKMFERLSKENSLERVDPYPTNAVDPDLGWITELVN 378
           +LRAKM E+LSKENSL+  +  P+    PD+ W++ELV 
Sbjct: 345 ELRAKMLEKLSKENSLDWAESNPSTCT-PDVEWVSELVK 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226427137|gb|ACO54858.1| zinc finger protein ZF3 [Cicer arietinum]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/398 (62%), Positives = 295/398 (74%), Gaps = 39/398 (9%)

Query: 1   MMLGEA-HRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAAL 59
           MMLGE  HR NPTI VPPW Q+  D TA+ IFSP  L +N + SP     Y++ E  +AL
Sbjct: 3   MMLGEPPHRTNPTIHVPPW-QMMSDSTAE-IFSP--LTTNDDYSP-----YYLQEALSAL 53

Query: 60  HRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHP 119
             Y+PSN+ D DSDSD   +     VD YSCD+FRM+EFK+R+CARGRSHDWTECPYAHP
Sbjct: 54  QHYIPSNEHDDDSDSD--AIPSHESVDVYSCDNFRMFEFKIRRCARGRSHDWTECPYAHP 111

Query: 120 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGC 179
           GEKARRRDPRKYHYSGTACPDFRKGS KKGD+CEFAHGVFECWLHPARYRTQPCKDG  C
Sbjct: 112 GEKARRRDPRKYHYSGTACPDFRKGSSKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSC 171

Query: 180 KRRVCFFAHTPDQLRILPQQSPRSASASDS-----------PSCAKTLPFLSSPESASPP 228
           +RRVCFFAHT +QLR   QQSPRS +++DS            SC K+LPF+SSP S SPP
Sbjct: 172 RRRVCFFAHTSEQLRTPTQQSPRSVNSTDSYDGSPLRLAIESSCVKSLPFMSSPGSVSPP 231

Query: 229 PSPRTESPMSHSLSRSLGTSS--INEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYG 286
                 SP++ SL RS G  S  +NEM+ S RNLQLGK+KSLPSSWN+Q+    GSP +G
Sbjct: 232 VESPPMSPLTSSLGRSFGFGSVNVNEMVVSLRNLQLGKMKSLPSSWNVQM----GSPRFG 287

Query: 287 SPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEE-EEEPVMERVESGRDLRAKM 345
           SPRG ++RPGFCSLP+TPT+TP R G+ + D+    W++  EEEP MERVESGRD+R KM
Sbjct: 288 SPRGPVIRPGFCSLPTTPTQTPNRSGVNHFDL----WDQRCEEEPAMERVESGRDIRVKM 343

Query: 346 FERLSKENSLERVDPYPTNA---VD--PDLGWITELVN 378
           FE+LSKENSL+R      +    VD  PD+GW++ELV+
Sbjct: 344 FEKLSKENSLDRSGLGSGSGSGQVDGAPDVGWVSELVS 381

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523868|ref|XP_003530556.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like [Glycine max]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/389 (62%), Positives = 283/389 (72%), Gaps = 46/389 (11%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
           MMLGE HR NPT+ VPPW           IFSP++   NA+ SP     Y + E  +AL 
Sbjct: 1   MMLGETHRANPTVHVPPW--------TPEIFSPYT--GNADYSP-----YSLQEALSALQ 45

Query: 61  RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
            Y      D +SDS+    +P+ PVDAYSCDHFRM+EFKVR+CARGRSHDWTECPYAHPG
Sbjct: 46  HY---ESTDAESDSEFPSREPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPG 102

Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
           EKARRRDPRKYHYSGTACPDFRKGSCKKGDACE+AHGVFECWLHPARYRTQPCKDG  C+
Sbjct: 103 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCR 162

Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASD-SP-------SCAKTL---PFLSSPESASPPP 229
           RRVCFFAHTP+QLR+LPQQSPRSA + D SP       SCAKTL   PF+SSP S SPP 
Sbjct: 163 RRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSCAKTLAPAPFVSSPGSVSPPL 222

Query: 230 SPRTESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPR 289
                SPM         T S+NEM+AS RNLQLGKVKSLPSSWN+      G  G+GSPR
Sbjct: 223 ESPPMSPM---------TVSVNEMVASLRNLQLGKVKSLPSSWNVM-----GPSGFGSPR 268

Query: 290 GSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERL 349
           G M+RPGF SLP+TPT+ PTR G+ Y D ++   +  EEEPVMERVESGR++RA+MF +L
Sbjct: 269 GPMIRPGFFSLPTTPTQAPTRGGVNYFDKWD---QSCEEEPVMERVESGRNIRARMFAKL 325

Query: 350 SKENSLERVDPYPTNAVDPDLGWITELVN 378
           SKEN L+  D       DPD+GW++ELV+
Sbjct: 326 SKENHLDGSDSGSGQIGDPDVGWVSELVS 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513195|ref|XP_003525299.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like [Glycine max]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/388 (62%), Positives = 284/388 (73%), Gaps = 46/388 (11%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
           MMLGE HRPNPT+ VPPW        A  IFSP++   NA+ SP     Y + E  +AL 
Sbjct: 1   MMLGETHRPNPTVHVPPW--------APEIFSPYT--GNADYSP-----YSMQEALSALQ 45

Query: 61  RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
            Y      D +SDS++   +P+ PVDAYSCDHFRM+EFKVR+CAR RSHDWT+CPYAHPG
Sbjct: 46  HY---ESTDAESDSEVPSREPEVPVDAYSCDHFRMFEFKVRRCARCRSHDWTDCPYAHPG 102

Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
           EKARRRDPRKYHYSGTACPDFRKGSCKKGDACE+AHGVFECWLHPARYRTQPCKDG  C+
Sbjct: 103 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCR 162

Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASD-SP-------SCAKTLPFLSSPESASPPPSPR 232
           RRVCFFAHTPDQLR+LPQQSPRSA + D SP       SCAK+ PF++SP SAS P    
Sbjct: 163 RRVCFFAHTPDQLRVLPQQSPRSADSYDGSPLRHAIESSCAKSHPFVASPGSASSPVESP 222

Query: 233 TESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSM 292
             SPM         T S+NEM+AS RNLQLGKVKSLPSSWN+      GS G+GSPRG M
Sbjct: 223 PMSPM---------TVSVNEMVASLRNLQLGKVKSLPSSWNVM-----GSSGFGSPRGPM 268

Query: 293 LRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEE--EEEPVMERVESGRDLRAKMFERLS 350
           +RPGF SLP+TPT+ PTR G+ Y D     W++   EEEPVMERVESGR +RA+MFE+LS
Sbjct: 269 IRPGFFSLPTTPTQAPTRGGVNYFDQ----WDQSCCEEEPVMERVESGRSIRARMFEKLS 324

Query: 351 KENSLERVDPYPTNAVDPDLGWITELVN 378
           KEN L+      +    PD+GW++ELV+
Sbjct: 325 KENHLDGSGSGSSQIGVPDVGWVSELVS 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646789|gb|ACU23866.1| unknown [Glycine max]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/389 (62%), Positives = 283/389 (72%), Gaps = 46/389 (11%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
           MMLGE HR NP + VPPW           IFSP++   NA+ SP     Y + E  +AL 
Sbjct: 1   MMLGETHRANPAVHVPPW--------TPEIFSPYT--GNADYSP-----YSLQEALSALQ 45

Query: 61  RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
            Y  +N    +SDS+    +P+ PVDAYSCDHFRM+EFKVR+CARGRSHDWTECPYAHPG
Sbjct: 46  HYESTN---AESDSEFPSREPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPG 102

Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
           EKARRRDPRKYHYSGTACPDFRKGSCKKGDACE+AHGVFECWLHPARYRTQPCKDG  C+
Sbjct: 103 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCR 162

Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASD-SP-------SCAKTL---PFLSSPESASPPP 229
           RRVCFFAHTP+QLR+LPQQSPRSA + D SP       SCAKTL   PF+SSP S SPP 
Sbjct: 163 RRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSCAKTLAPAPFVSSPGSVSPPL 222

Query: 230 SPRTESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPR 289
                SPM         T S+NEM+AS RNLQLGKVKSLPSSWN+      G  G+GSPR
Sbjct: 223 ESPPMSPM---------TVSVNEMVASLRNLQLGKVKSLPSSWNVM-----GPSGFGSPR 268

Query: 290 GSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERL 349
           G M+RPGF SLP+TPT+ PTR G+ Y D ++   +  EEEPVMERVESGR++RA+MF +L
Sbjct: 269 GPMIRPGFFSLPTTPTQAPTRGGVNYFDKWD---QSCEEEPVMERVESGRNIRARMFAKL 325

Query: 350 SKENSLERVDPYPTNAVDPDLGWITELVN 378
           SKEN L+  D       DPD+GW++ELV+
Sbjct: 326 SKENHLDGSDFGSGQIGDPDVGWVSELVS 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282073|dbj|BAJ33902.1| unnamed protein product [Thellungiella halophila]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/389 (63%), Positives = 288/389 (74%), Gaps = 37/389 (9%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
           MM+GEA R +PT+ +PPWP + +D +A ++FSP      A  SP+ S L    E  AAL 
Sbjct: 1   MMIGEARRTHPTVEIPPWP-VSEDFSAADMFSP------AMNSPDCSML----EALAALQ 49

Query: 61  RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
           RYLPSN+PD DSDSD+ G  PDSP+DAYSCDHFRMY+FKVR+CARGRSHDWTECPYAHPG
Sbjct: 50  RYLPSNEPDPDSDSDLLG--PDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPG 107

Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
           EKARRRDPRKYHYSGTACPDFRKGSCKKGD CEFAHGVFECWLHP RYRTQPCKDGG C+
Sbjct: 108 EKARRRDPRKYHYSGTACPDFRKGSCKKGDTCEFAHGVFECWLHPLRYRTQPCKDGGNCR 167

Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASD--SP---SCAKTLPFLSSPESASPPPSPRTE- 234
           R+VCFFAH+PDQLR LP +SP    + D  SP   SCA+      SP S SPP SPR + 
Sbjct: 168 RKVCFFAHSPDQLRYLPNRSPDRVDSFDVSSPIRHSCARAFQLSISPVSGSPPMSPRADS 227

Query: 235 --SPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSM 292
             SPM+ SLSRSLG+ SIN+ + SFRNLQ  KVKS P ++N  +       G+GSPRGS+
Sbjct: 228 ESSPMTQSLSRSLGSCSINDTVTSFRNLQFEKVKSFPPTYNNPLRCYQS--GFGSPRGSI 285

Query: 293 LRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEE-EEEPVMER-VESGRDLRAKMFERLS 350
           L PGF SLPSTPTR       G  DI    WE   EEEP MER VESGR+LRAKMFE+LS
Sbjct: 286 LGPGFQSLPSTPTRP------GNLDI----WENGLEEEPAMERVVESGRELRAKMFEKLS 335

Query: 351 KENSLERVDPYP--TNAVDPDLGWITELV 377
           KEN ++RV+P P   +   PD+GW++ELV
Sbjct: 336 KENCMDRVEPDPDQNSGEAPDVGWVSELV 364

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520840|ref|XP_003529068.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like isoform 1 [Glycine max] gi|356520842|ref|XP_003529069.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like isoform 2 [Glycine max]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/380 (62%), Positives = 275/380 (72%), Gaps = 23/380 (6%)

Query: 1   MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
           MMLGE HR NPT+ VPPWP   DDPTA+ ++S    N    G  EYS  Y++ E   AL 
Sbjct: 1   MMLGEHHRANPTVHVPPWPTH-DDPTAE-MYSAFLTNDVNAG--EYSP-YYLQEALTALQ 55

Query: 61  RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
           R+LPSN+ D DSD++     PD+ VDAYSCDHFRMYEFKVR+CARGRSHDWTECPYAHPG
Sbjct: 56  RFLPSNETDADSDTEA---QPDAAVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPG 112

Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
           EKARRRDPRK+HYSG ACP+FRKG+CKKGD CEFAHGVFECWLHPARYRTQPCKDG  C+
Sbjct: 113 EKARRRDPRKFHYSGAACPEFRKGNCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCR 172

Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPPPSPRTESPMSHS 240
           RRVCFFAHTP+QLR+LP QSPRSA+ S        +  + SP +    P+          
Sbjct: 173 RRVCFFAHTPEQLRVLPMQSPRSAANSSESYDGSPMRQMMSPAAFMSSPAASLS-----P 227

Query: 241 LSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLRPGFCSL 300
                 + SINEM+AS RNLQLGK+KS+P S N+ V    GSPGYGSPRGS+LRPGFCSL
Sbjct: 228 PESPPVSPSINEMVASLRNLQLGKMKSMPQSRNVSV----GSPGYGSPRGSVLRPGFCSL 283

Query: 301 PSTPTRTPTRPGIGYPDIFNTCWEEE-EEEPVMERVESGRDLRAKMFERLSKENSLERVD 359
           P+TPT+ P R G+   D     W++  EEEPVMERVESGR +RAKMFE+LSKENSLE   
Sbjct: 284 PTTPTQQPVRSGVNCFDF----WDQSCEEEPVMERVESGRGIRAKMFEKLSKENSLEGSG 339

Query: 360 PYPTNAVD-PDLGWITELVN 378
                    PD+GW++ELVN
Sbjct: 340 TGSGQGSGAPDVGWVSELVN 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2052005	359	OZF1 "Oxidation-related Zinc F	0.475	0.504	0.629	7.4e-82
TAIR|locus:2118209	356	OZF2 "oxidation-related zinc f	0.480	0.514	0.647	1.9e-81
UNIPROTKB|Q9FU27	386	LOC_Os01g09620 "Zinc finger CC	0.446	0.440	0.631	2.4e-75
TAIR|locus:2043565	315	ATCTH [Arabidopsis thaliana (t	0.501	0.606	0.592	6.8e-69
TAIR|locus:2158685	381	TZF5 "Tandem CCCH Zinc Finger	0.291	0.291	0.714	1.1e-53
TAIR|locus:2024112	393	SOM "SOMNUS" [Arabidopsis thal	0.291	0.282	0.723	3.7e-52
TAIR|locus:2064647	716	OXS2 "OXIDATIVE STRESS 2" [Ara	0.286	0.152	0.743	1.6e-50
TAIR|locus:2178843	607	AT5G58620 [Arabidopsis thalian	0.286	0.179	0.697	2.3e-48
TAIR|locus:2182250	706	AT5G12850 [Arabidopsis thalian	0.286	0.154	0.724	1.9e-46
TAIR|locus:2065058	597	CZF1 [Arabidopsis thaliana (ta	0.280	0.179	0.700	3.7e-46

TAIR|locus:2052005 OZF1 "Oxidation-related Zinc Finger 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
 Identities = 124/197 (62%), Positives = 145/197 (73%)

Query:     1 MMLGEAHRP-NPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAAL 59
             MM+GE+HR  NPT+ +PPWP L +D T  +I+          GSP+  +   + E  A L
Sbjct:     1 MMIGESHRGFNPTVHIPPWP-LSEDLTVSDIY----------GSPDGGS--SMMEALAEL 47

Query:    60 HRYXXXXXXXXXXXXXXXXXXXXXXVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHP 119
              RY                      +DAY+CDHFRMYEFKVR+CARGRSHDWTECPYAHP
Sbjct:    48 QRYLPSNEPDPDSDPDLSGPDSP--IDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHP 105

Query:   120 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGC 179
             GEKARRRDPRK+HYSGTACP+FRKG CK+GDACEF+HGVFECWLHPARYRTQPCKDGG C
Sbjct:   106 GEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNC 165

Query:   180 KRRVCFFAHTPDQLRIL 196
             +RRVCFFAH+PDQ+R+L
Sbjct:   166 RRRVCFFAHSPDQIRVL 182

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2118209 OZF2 "oxidation-related zinc finger 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 1.9e-81, Sum P(3) = 1.9e-81
 Identities = 127/196 (64%), Positives = 141/196 (71%)

Query:     1 MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
             MM+GE  R  PT+ +PPWP L ++ T    FSP  +NS     P+ S L    E  A L 
Sbjct:     1 MMIGETRRTYPTVEIPPWPVL-EELTTSEFFSP-VMNS-----PDCSML----EALAGLQ 49

Query:    61 RYXXXXXXXXXXXXXXXXXXXXXXVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
             RY                      +DAYSCDHFRMY+FKVR+CARGRSHDWTECPYAHPG
Sbjct:    50 RYLPSNEPDPESYPDLLGPDSP--IDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPG 107

Query:   121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
             EKARRRDPRKYHYSGTACPDFRKG CKKGD+CEFAHGVFECWLHPARYRTQPCKDGG C 
Sbjct:   108 EKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCL 167

Query:   181 RRVCFFAHTPDQLRIL 196
             R++CFFAH+PDQLR L
Sbjct:   168 RKICFFAHSPDQLRFL 183

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9FU27 LOC_Os01g09620 "Zinc finger CCCH domain-containing protein 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 633 (227.9 bits), Expect = 2.4e-75, Sum P(3) = 2.4e-75
 Identities = 115/182 (63%), Positives = 124/182 (68%)

Query:    15 VPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALHRYXXXXXXXXXXXX 74
             VPPW  LP       +     L     G  E +     P   AAL  Y            
Sbjct:    11 VPPWSHLP-------VSGVDVLGGGGGGGDEMT-----PYVIAALRDYLPANDVGVGADE 58

Query:    75 XXXXXXXXXXVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYS 134
                       VDAY+CD FRMYEFKVR+CARGRSHDWTECP+AHPGEKARRRDPRKYHYS
Sbjct:    59 EEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYS 118

Query:   135 GTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLR 194
             GTACPDFRKG CK+GDACE+AHGVFECWLHPARYRTQPCKDG  C+RRVCFFAHTPDQLR
Sbjct:   119 GTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLR 178

Query:   195 IL 196
             +L
Sbjct:   179 VL 180

GO:0005634 "nucleus" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IC

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2043565 ATCTH [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
 Identities = 118/199 (59%), Positives = 148/199 (74%)

Query:     1 MMLGE-AHRPNPTILVPPWPQLPDDPTADNIFSPHS-LNSNA-NGSPEYSNLYHIPETYA 57
             MM+GE  +RP+PTI +P W Q+ +DPTA  I SP S +N N+ N  P   + Y   +++A
Sbjct:     1 MMIGENKNRPHPTIHIPQWDQI-NDPTA-TISSPFSSVNLNSVNDYPHSPSPYL--DSFA 56

Query:    58 ALHRYXXXXXXXXXXXXXXXXXXXXXXVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYA 117
             +L RY                       D++S D FR+YEFK+R+CARGRSHDWTECP+A
Sbjct:    57 SLFRYLPSNELTNDSDSSSGDESSPLT-DSFSSDEFRIYEFKIRRCARGRSHDWTECPFA 115

Query:   118 HPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGG 177
             HPGEKARRRDPRK+HYSGTACP+FRKGSC++GD+CEF+HGVFECWLHP+RYRTQPCKDG 
Sbjct:   116 HPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGT 175

Query:   178 GCKRRVCFFAHTPDQLRIL 196
              C+RR+CFFAHT +QLR+L
Sbjct:   176 SCRRRICFFAHTTEQLRVL 194

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2158685 TZF5 "Tandem CCCH Zinc Finger protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
 Identities = 80/112 (71%), Positives = 96/112 (85%)

Query:    86 DAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDF-RKG 144
             D Y+ DHFRMYEFK+R+C R RSHDWT+CP++HPGEKARRRDPR++HY+G  CP+F R G
Sbjct:    54 DPYAGDHFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHG 113

Query:   145 SCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
              C +GD C FAHGVFECWLHP+RYRT+ CKDG  CKR+VCFFAH+P QLR+L
Sbjct:   114 DCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRVL 165

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2024112 SOM "SOMNUS" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
 Identities = 81/112 (72%), Positives = 96/112 (85%)

Query:    86 DAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGS 145
             D Y+ DHFRM+EFK+R+C R RSHDWT+CP+AHPGEKARRRDPR++ YSG  CP+FR+G 
Sbjct:    76 DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGG 135

Query:   146 -CKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
              C +GD CEFAHGVFECWLHP RYRT+ CKDG  CKR+VCFFAH+P QLR+L
Sbjct:   136 DCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVL 187

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010187 "negative regulation of seed germination" evidence=IMP

TAIR|locus:2064647 OXS2 "OXIDATIVE STRESS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 1.6e-50, Sum P(2) = 1.6e-50
 Identities = 81/109 (74%), Positives = 93/109 (85%)

Query:    88 YSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCK 147
             Y+ D FRMY FKVR C+R  SHDWTECP+ HPGE ARRRDPRK+HYS   CPDFRKG+C+
Sbjct:   257 YATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACR 316

Query:   148 KGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
             +GD CE+AHGVFECWLHPA+YRT+ CKDG GC RRVCFFAHTP++LR L
Sbjct:   317 RGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRPL 365

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2178843 AT5G58620 [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
 Identities = 76/109 (69%), Positives = 88/109 (80%)

Query:    88 YSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCK 147
             Y  D FRMY FK++ C+R  SHDWTECP+ HPGE ARRRDPRKYHYS   CP+FRKGSC 
Sbjct:   205 YGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCS 264

Query:   148 KGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
             +GD CE+AHG+FECWLHPA+YRT+ CKD   C RRVCFFAH P++LR L
Sbjct:   265 RGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRVCFFAHKPEELRPL 313

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2182250 AT5G12850 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.9e-46, P = 1.9e-46
 Identities = 79/109 (72%), Positives = 92/109 (84%)

Query:    88 YSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCK 147
             YS D FRM+ FK+R C+R  SHDWTECP+AHPGE ARRRDPRK+HY+   CPDF+KGSCK
Sbjct:   253 YSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGSCK 312

Query:   148 KGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
             +GD CE+AHGVFECWLHPA+YRT+ CKDG GC RRVCFFAH  ++LR L
Sbjct:   313 QGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPL 361

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2065058 CZF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
 Identities = 75/107 (70%), Positives = 86/107 (80%)

Query:    88 YSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCK 147
             Y  D FRM+ FKV+ C+R  SHDWTECP+ HPGE ARRRDPRKY Y+   CP+FRKGSC 
Sbjct:   210 YGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGSCP 269

Query:   148 KGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLR 194
             KGD+CE+AHGVFE WLHPA+YRT+ CKD  GC RRVCFFAH  D+LR
Sbjct:   270 KGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFAHRRDELR 316

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009409 "response to cold" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82199	C3H20_ARATH	No assigned EC number	0.6129	0.9186	0.9749	yes	no
Q9FU27	C3H2_ORYSJ	No assigned EC number	0.4587	0.9212	0.9093	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
smart00356	27	smart00356, ZnF_C3H1, zinc finger	1e-04

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 133 YSGTACPDFRKGSCKKGDACEFAHG 157
           Y    C  F++G C +GD C+FAH 
Sbjct: 2   YKTELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	100.0
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.3
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	98.57
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.48
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.44
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	97.97
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	97.86
smart00356	27	ZnF_C3H1 zinc finger.	97.65
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.64
KOG1040	325	consensus Polyadenylation factor I complex, subuni	96.91
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	96.61
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	96.48
KOG1040	325	consensus Polyadenylation factor I complex, subuni	95.91
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	95.28
smart00356	27	ZnF_C3H1 zinc finger.	95.17
KOG4791	667	consensus Uncharacterized conserved protein [Funct	94.07
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	93.52
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	93.34
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	93.11
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	92.44
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	91.43
KOG2333	614	consensus Uncharacterized conserved protein [Gener	90.5
COG5152	259	Uncharacterized conserved protein, contains RING a	90.01
KOG2185	486	consensus Predicted RNA-processing protein, contai	89.07
KOG2333	614	consensus Uncharacterized conserved protein [Gener	87.76
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	87.35
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	87.0
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	84.66
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	84.34
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	84.13
KOG2185	486	consensus Predicted RNA-processing protein, contai	82.89
KOG1763	343	consensus Uncharacterized conserved protein, conta	82.87

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=7.1e-67  Score=531.49  Aligned_cols=333  Identities=44%  Similarity=0.729  Sum_probs=258.3

Q ss_pred             CCcCCC-CCCCCCcccCCCCCCCCCCCCCccCCCCccCCCCCCCCCCC-------CC--CChHHHHHHHH--hhCCCCCC
Q 016862            1 MMLGEA-HRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYS-------NL--YHIPETYAALH--RYLPSNDP   68 (381)
Q Consensus         1 mm~~e~-~~~~~~~~~ppw~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~--~~~~~~~~~l~--~~Lp~n~~   68 (381)
                      ||||++ +..++++|||+|+.+. ..          .|+.|+..++..       +-  ....+++..|+  .+|+.++.
T Consensus        97 ~~~g~s~~~~e~~~hL~~~k~~~-~~----------tda~g~~~~~v~~~~~~~~~~~~r~~~~~l~e~~~~~~~~~~e~  165 (528)
T KOG1595|consen   97 AVLGRSVGDTERTYHLRYYKTLP-CV----------TDARGNCVKNVLHCAFAHGPNDLRPPVEDLLELQGGSGLPDDEP  165 (528)
T ss_pred             hhcccccCCcceeEecccccccc-Cc----------cccCCCcccCcccccccCCccccccHHHHHHhcccccCccCCCc
Confidence            799995 6777999999999988 32          355666554431       11  34567777777  77888887


Q ss_pred             CCCCCCCCCC--CC---CCCCCCccccCceEeeccceeccCCCCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCcc
Q 016862           69 DLDSDSDMSG--LD---PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK  143 (381)
Q Consensus        69 ~~~~d~~~~~--~~---~~~~v~~Ys~DeFrm~~FKTr~C~rg~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frk  143 (381)
                      +++.+.+...  +.   |++. ++|++||||||.||||+|+|++||||++|||||++||+|||||++|+|+.++||+|+|
T Consensus       166 ~~~~~~~~~~y~~Dp~~pdi~-~~ys~DeFrMy~fKir~C~R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrk  244 (528)
T KOG1595|consen  166 EVESKLDVTEYPEDPSWPDIN-GIYSSDEFRMYSFKIRRCSRPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRK  244 (528)
T ss_pred             ccccccccccccCCCCccccc-ccccccceEEEeeeecccCCccCCCcccCCccCCCcccccCCcccccccCccCccccc
Confidence            6644411110  11   3444 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCcchhhcCcCCccCcCCCCCCCCCCcccCCCCCCcccCCCCCC-CCCCCCCCCC---CCCc-CCCCC
Q 016862          144 GSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQ-SPRSASASDS---PSCA-KTLPF  218 (381)
Q Consensus       144 G~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~g~C~r~~C~FAH~~~ELR~~p~~-sP~s~~s~dg---sPl~-~~~~~  218 (381)
                      |.|++||.|+||||+||+|+||.+|||++|+++|+|+|.+|||||.++|||.++.. .+....+.+.   +|.. ....+
T Consensus       245 G~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg~~C~RrvCfFAH~~eqLR~l~~s~~s~~~~sp~~s~~sp~~~~~~~~  324 (528)
T KOG1595|consen  245 GSCERGDSCEYAHGVFECWLHPARYRTRKCKDGGYCPRRVCFFAHSPEQLRPLPPSTGSDRPSSPSSSSASPMMASLRSL  324 (528)
T ss_pred             CCCCCCCccccccceehhhcCHHHhccccccCCCCCccceEeeecChHHhcccCCCCCCCCCCCcccccCCCCccccccC
Confidence            99999999999999999999999999999999999999999999999999999851 1111111111   2322 22333


Q ss_pred             CCCCCCCCCCCCCCCCCCCC---CCcccccCcchHHHHHHhhhc-cccCccccCC-CccccccCCCCCCCCCCCCCCCCC
Q 016862          219 LSSPESASPPPSPRTESPMS---HSLSRSLGTSSINEMMASFRN-LQLGKVKSLP-SSWNIQVGGVGGSPGYGSPRGSML  293 (381)
Q Consensus       219 ~~sP~s~sPp~sp~~~s~~~---~~~~~~~~~~~~~e~~~s~r~-l~~~~~~s~p-~~~~~~~~~~~~~~~~gSpr~s~l  293 (381)
                      ..+|+..+||+||...+.++   .-...+....+++...+.++. .+|....++. +.|+.++...+-..+||+|.+++|
T Consensus       325 ~~s~~~~~~p~sp~~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~Srl~s~~~a~~i~~~~~~~~~~l~~~f~s~~sssl  404 (528)
T KOG1595|consen  325 PFSPSPGSPPLSPSANGVSSPIASGGSRSLNSNSPSSPAAPLRSFSRLSSSLSAADISMSSPMNLGNLSELFSSPDSSSL  404 (528)
T ss_pred             CCCCCCCCCCCCccccccccccccccccccCCCCCCCccccccccccccccccccccccccccccccchhhhcCcccccc
Confidence            44666678888886665444   333455666788999999999 9999888755 477777754322348999999999


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCccccccc-cccccchhh---hhcchhhHHHHHHH--hhhcc
Q 016862          294 RPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEE-EEEEPVMER---VESGRDLRAKMFER--LSKEN  353 (381)
Q Consensus       294 r~g~~SLp~tpt~~~~~~~~~~~d~~~~~wd~-~eEep~meR---VESGr~lRak~~er--Lsken  353 (381)
                      .+.|.+|+++||.+.....    =+    |.. +|++++|++   |+++|.||+.++++  ||.+.
T Consensus       405 ~~~~~~~~~~~tsP~~~~~----~~----~~~~~e~s~~~~~~~~~~~~r~l~~~l~~~~~~s~~~  462 (528)
T KOG1595|consen  405 NPQLQVLSSAPTSPVFTDT----AS----FGSSVESSPAMEGRSQVMSSRELRASLKRSSTLSDKP  462 (528)
T ss_pred             chhhhhcccCCcCCcCCcc----cc----cccccccchhhhcccccccchhhhhhhcccccccccc
Confidence            9999999988887632211    13    655 799999999   99999999999999  99993

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.30  E-value=2.4e-12  Score=124.00  Aligned_cols=92  Identities=37%  Similarity=0.674  Sum_probs=72.3

Q ss_pred             CCCCCCCCCCCCCCcccccCCCC---C----CCCccCCCCcCCcc-CCCCC-CCCCCCCcCcchhh--------cCcCCc
Q 016862          106 GRSHDWTECPYAHPGEKARRRDP---R----KYHYSGTACPDFRK-GSCKK-GDACEFAHGVFECW--------LHPARY  168 (381)
Q Consensus       106 g~chd~t~CpFAH~~Ek~RRRdP---~----~~~Yst~lCP~frk-G~C~~-Gd~C~FAHg~~El~--------~HP~~Y  168 (381)
                      +.|-....|+|.|+..+.+.+..   .    .-.|++.+|..|++ |.|++ |++|+|+|+..|++        ..+.+|
T Consensus        96 ~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~  175 (332)
T KOG1677|consen   96 GVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKY  175 (332)
T ss_pred             CCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCC
Confidence            33555559999999522222221   1    12478999999985 89999 99999999999988        247799


Q ss_pred             cCcCCCCC---CCCCC-cccCCCCCCcccCCCC
Q 016862          169 RTQPCKDG---GGCKR-RVCFFAHTPDQLRILP  197 (381)
Q Consensus       169 KTk~Ck~~---g~C~r-~~C~FAH~~~ELR~~p  197 (381)
                      ||++|..|   |.|++ .+|.|+|+..+++...
T Consensus       176 kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~  208 (332)
T KOG1677|consen  176 KTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASN  208 (332)
T ss_pred             CCcCCCccccCCCCCCCCcCeecCCCccccccc
Confidence            99999999   89996 8999999999998754

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.57  E-value=3.4e-08  Score=95.39  Aligned_cols=71  Identities=31%  Similarity=0.545  Sum_probs=57.4

Q ss_pred             ceEeeccceeccCC----CCCCC-CCCCCCCCCcccccC------CCCCCCCccCCCCcCCcc-CCCCCCCCCCCCcCcc
Q 016862           92 HFRMYEFKVRKCAR----GRSHD-WTECPYAHPGEKARR------RDPRKYHYSGTACPDFRK-GSCKKGDACEFAHGVF  159 (381)
Q Consensus        92 eFrm~~FKTr~C~r----g~chd-~t~CpFAH~~Ek~RR------RdP~~~~Yst~lCP~frk-G~C~~Gd~C~FAHg~~  159 (381)
                      +..-..|||..|-.    +.|.+ +.+|-|+|..|. .|      ..-+..+|+|++|+.|.+ |.|++|.+|.|+|+..
T Consensus       124 ~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e-~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~  202 (332)
T KOG1677|consen  124 ERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEE-LRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP  202 (332)
T ss_pred             ccCcccccCCcceeeecCccccccCchhhhcCCccc-ccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence            34456799999984    77999 999999999765 44      222346799999999997 9999999999999988


Q ss_pred             hhhc
Q 016862          160 ECWL  163 (381)
Q Consensus       160 El~~  163 (381)
                      |...
T Consensus       203 ~~~~  206 (332)
T KOG1677|consen  203 EDRA  206 (332)
T ss_pred             cccc
Confidence            7663

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.48  E-value=7.6e-08  Score=95.24  Aligned_cols=66  Identities=35%  Similarity=0.672  Sum_probs=57.3

Q ss_pred             ccC--CCCcCCc-cCCCCC---CCCCCCC---cCcchhhcC--cCCccCcCCCCC---CCCCC-cccCCCCCCcccCCCC
Q 016862          133 YSG--TACPDFR-KGSCKK---GDACEFA---HGVFECWLH--PARYRTQPCKDG---GGCKR-RVCFFAHTPDQLRILP  197 (381)
Q Consensus       133 Yst--~lCP~fr-kG~C~~---Gd~C~FA---Hg~~El~~H--P~~YKTk~Ck~~---g~C~r-~~C~FAH~~~ELR~~p  197 (381)
                      |++  .+|..|. +|.|++   |++|+||   ||.-|+...  -..|||++|+.|   |+|++ .+|.|+|+.+++.-++
T Consensus       226 ~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~  305 (351)
T COG5063         226 YKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMY  305 (351)
T ss_pred             hcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhcccc
Confidence            677  7999986 799999   9999999   998876544  467999999999   89996 8999999999988776


Q ss_pred             C
Q 016862          198 Q  198 (381)
Q Consensus       198 ~  198 (381)
                      .
T Consensus       306 ~  306 (351)
T COG5063         306 E  306 (351)
T ss_pred             c
Confidence            5

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.44  E-value=2.2e-06  Score=89.67  Aligned_cols=66  Identities=30%  Similarity=0.554  Sum_probs=55.6

Q ss_pred             EeeccceeccCC---CCCCCCCCCCCCCCc-ccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcC
Q 016862           94 RMYEFKVRKCAR---GRSHDWTECPYAHPG-EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPA  166 (381)
Q Consensus        94 rm~~FKTr~C~r---g~chd~t~CpFAH~~-Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~  166 (381)
                      |.|.|.-..||-   |.|+.|+.|-|||.. |-|  =.|.  +|+|++|++-  |.|++ --|-|||..+||+.++.
T Consensus       230 RkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcw--LHPa--~YRT~~CkDg--~~C~R-rvCfFAH~~eqLR~l~~  299 (528)
T KOG1595|consen  230 RKYHYSSTPCPEFRKGSCERGDSCEYAHGVFECW--LHPA--RYRTRKCKDG--GYCPR-RVCFFAHSPEQLRPLPP  299 (528)
T ss_pred             ccccccCccCcccccCCCCCCCccccccceehhh--cCHH--HhccccccCC--CCCcc-ceEeeecChHHhcccCC
Confidence            689999999995   779999999999985 333  3444  5789999998  78999 89999999999987763

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=97.97  E-value=6.5e-06  Score=81.86  Aligned_cols=109  Identities=20%  Similarity=0.347  Sum_probs=83.1

Q ss_pred             CCCccccCceEeeccce--eccCC----CCCCC---CCCCCCC---CCcccccCCCCCCCCccCCCCcCCcc-CCCCCCC
Q 016862           84 PVDAYSCDHFRMYEFKV--RKCAR----GRSHD---WTECPYA---HPGEKARRRDPRKYHYSGTACPDFRK-GSCKKGD  150 (381)
Q Consensus        84 ~v~~Ys~DeFrm~~FKT--r~C~r----g~chd---~t~CpFA---H~~Ek~RRRdP~~~~Yst~lCP~frk-G~C~~Gd  150 (381)
                      .+.+|...+--|.-+||  ..|.-    |.|..   +..|.|+   |.. +...-.=.+..|+|++|-+|.+ |.|++|.
T Consensus       212 ~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGl-N~l~~k~k~~~frTePcinwe~sGyc~yg~  290 (351)
T COG5063         212 DELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGL-NELKSKKKKQNFRTEPCINWEKSGYCPYGL  290 (351)
T ss_pred             hhhhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccc-ccccccccccccccCCccchhhcccCcccc
Confidence            34566667778889999  89963    77888   8899999   874 3333333445699999999997 8999999


Q ss_pred             CCCCCcCcchhh---cCc-CCccCcCCCCC---CCCCC-cccCCCCCCccc
Q 016862          151 ACEFAHGVFECW---LHP-ARYRTQPCKDG---GGCKR-RVCFFAHTPDQL  193 (381)
Q Consensus       151 ~C~FAHg~~El~---~HP-~~YKTk~Ck~~---g~C~r-~~C~FAH~~~EL  193 (381)
                      +|.|+||..+..   .|+ +.|+...|+.+   |.|+. ..|.|-|...-+
T Consensus       291 Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~  341 (351)
T COG5063         291 RCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNL  341 (351)
T ss_pred             ccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchh
Confidence            999999986654   444 57999999998   78984 557777765433

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.86  E-value=2.3e-06  Score=56.42  Aligned_cols=25  Identities=48%  Similarity=1.069  Sum_probs=20.1

Q ss_pred             ccCCCCcCCcc-CCCCCCCCCCCCcC
Q 016862          133 YSGTACPDFRK-GSCKKGDACEFAHG  157 (381)
Q Consensus       133 Yst~lCP~frk-G~C~~Gd~C~FAHg  157 (381)
                      |++++|++|.+ |.|++|++|.|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            67899999987 99999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=97.65  E-value=3.5e-05  Score=49.11  Aligned_cols=25  Identities=44%  Similarity=0.999  Sum_probs=23.1

Q ss_pred             ccCCCCcCCccCCCCCCCCCCCCcC
Q 016862          133 YSGTACPDFRKGSCKKGDACEFAHG  157 (381)
Q Consensus       133 Yst~lCP~frkG~C~~Gd~C~FAHg  157 (381)
                      |++.+|+.|.+|.|++|++|.|+|.
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCc
Confidence            5688999999999999999999997

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.64  E-value=1.4e-05  Score=79.82  Aligned_cols=59  Identities=34%  Similarity=0.798  Sum_probs=46.4

Q ss_pred             CCCCcCCccCCCCCCCC-CCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccCC
Q 016862          135 GTACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLRI  195 (381)
Q Consensus       135 t~lCP~frkG~C~~Gd~-C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR~  195 (381)
                      -+.|++|.+|.|.+||. |+|+|--.-+  +-..-+-..|.++  |.|.|..|.|+|.+.+++.
T Consensus        37 ~eVCReF~rn~C~R~d~~CkfaHP~~~~--~V~~g~v~aC~Ds~kgrCsR~nCkylHpp~hlkd   98 (331)
T KOG2494|consen   37 LEVCREFLRNTCSRGDRECKFAHPPKNC--QVSNGRVIACFDSQKGRCSRENCKYLHPPQHLKD   98 (331)
T ss_pred             HHHHHHHHhccccCCCccccccCCCCCC--CccCCeEEEEeccccCccCcccceecCCChhhhh
Confidence            36899999999999998 9999975422  2223445579998  8899999999999988874

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=96.91  E-value=0.00072  Score=67.83  Aligned_cols=50  Identities=34%  Similarity=0.755  Sum_probs=26.7

Q ss_pred             cCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC---CCCCC-cccCCCCCC
Q 016862          134 SGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDG---GGCKR-RVCFFAHTP  190 (381)
Q Consensus       134 st~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~---g~C~r-~~C~FAH~~  190 (381)
                      +.+.|+.|..|.|+.||.|.|+|-. +      +-|...|..|   +.|.+ ..|.|.|+.
T Consensus        76 ~~~vcK~~l~glC~kgD~C~Flhe~-~------~~k~rec~ff~~~g~c~~~~~c~y~h~d  129 (325)
T KOG1040|consen   76 GKVVCKHWLRGLCKKGDQCEFLHEY-D------LTKMRECKFFSLFGECTNGKDCPYLHGD  129 (325)
T ss_pred             CceeehhhhhhhhhccCcCcchhhh-h------hcccccccccccccccccccCCcccCCC
Confidence            3556666666666666666666653 1      2233345444   45554 455555554

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.61  E-value=0.00049  Score=45.33  Aligned_cols=23  Identities=39%  Similarity=0.724  Sum_probs=17.8

Q ss_pred             ccCcCCCCC---CCCCC-cccCCCCCC
Q 016862          168 YRTQPCKDG---GGCKR-RVCFFAHTP  190 (381)
Q Consensus       168 YKTk~Ck~~---g~C~r-~~C~FAH~~  190 (381)
                      |||++|+.|   |.|++ ..|.|+|++
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            799999998   89996 899999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=96.48  E-value=0.0015  Score=63.72  Aligned_cols=65  Identities=28%  Similarity=0.682  Sum_probs=52.9

Q ss_pred             CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcc
Q 016862          106 GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRV  183 (381)
Q Consensus       106 g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~  183 (381)
                      |.|-.+..|-|.|-..+            .+.||.|..|.|.+.+.|...|...-       .+--.|+.|  |.|..+.
T Consensus       216 gicgkgaacrfvheptr------------kticpkflngrcnkaedcnlsheldp-------rripacryfllgkcnnpn  276 (377)
T KOG1492|consen  216 GICGKGAACRFVHEPTR------------KTICPKFLNGRCNKAEDCNLSHELDP-------RRIPACRYFLLGKCNNPN  276 (377)
T ss_pred             CcccCCceeeeeccccc------------cccChHHhcCccCchhcCCcccccCc-------cccchhhhhhhccCCCCC
Confidence            56888999999995321            47999999999999999999998532       233469998  9999999


Q ss_pred             cCCCCC
Q 016862          184 CFFAHT  189 (381)
Q Consensus       184 C~FAH~  189 (381)
                      |+|.|-
T Consensus       277 cryvhi  282 (377)
T KOG1492|consen  277 CRYVHI  282 (377)
T ss_pred             ceEEEE
Confidence            999884

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=95.91  E-value=0.0067  Score=61.03  Aligned_cols=78  Identities=23%  Similarity=0.451  Sum_probs=56.4

Q ss_pred             ccceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCc-cCCCCCCCCCCCCcCcchhhcCcCCccCcC
Q 016862           97 EFKVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFR-KGSCKKGDACEFAHGVFECWLHPARYRTQP  172 (381)
Q Consensus        97 ~FKTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~fr-kG~C~~Gd~C~FAHg~~El~~HP~~YKTk~  172 (381)
                      .+++..|..   +.|..++.|.|.|-.+  ..+        .-.|..|. .|.|.+|.+|.|-|+..|       -+-+.
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~~--~~k--------~rec~ff~~~g~c~~~~~c~y~h~dpq-------t~~k~  136 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEYD--LTK--------MRECKFFSLFGECTNGKDCPYLHGDPQ-------TAIKK  136 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhhh--hcc--------cccccccccccccccccCCcccCCChh-------hhhhc
Confidence            577888885   7799999999999641  122        22455555 578999999999999752       34456


Q ss_pred             CCCC--CCCCC-cccCCCCCCc
Q 016862          173 CKDG--GGCKR-RVCFFAHTPD  191 (381)
Q Consensus       173 Ck~~--g~C~r-~~C~FAH~~~  191 (381)
                      |+.+  |.|+. ..|.+.|-..
T Consensus       137 c~~~~~g~c~~g~~c~~~h~~~  158 (325)
T KOG1040|consen  137 CKWYKEGFCRGGPSCKKRHERK  158 (325)
T ss_pred             cchhhhccCCCcchhhhhhhcc
Confidence            7777  77874 7888888766

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=95.28  E-value=0.011  Score=59.66  Aligned_cols=52  Identities=25%  Similarity=0.478  Sum_probs=39.4

Q ss_pred             CCCCCCCCC-CCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhh
Q 016862          105 RGRSHDWTE-CPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW  162 (381)
Q Consensus       105 rg~chd~t~-CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~  162 (381)
                      |+.|.++++ |-|||+-+     ++..-+=+-..|=++.||.|.+ ++|+|.|...++.
T Consensus        45 rn~C~R~d~~CkfaHP~~-----~~~V~~g~v~aC~Ds~kgrCsR-~nCkylHpp~hlk   97 (331)
T KOG2494|consen   45 RNTCSRGDRECKFAHPPK-----NCQVSNGRVIACFDSQKGRCSR-ENCKYLHPPQHLK   97 (331)
T ss_pred             hccccCCCccccccCCCC-----CCCccCCeEEEEeccccCccCc-ccceecCCChhhh
Confidence            466766776 99999953     3444444456999999999998 6799999986654

>smart00356 ZnF_C3H1 zinc finger

Probab=95.17  E-value=0.016  Score=36.71  Aligned_cols=24  Identities=42%  Similarity=0.707  Sum_probs=20.6

Q ss_pred             CccCcCCCCC--CCCCC-cccCCCCCC
Q 016862          167 RYRTQPCKDG--GGCKR-RVCFFAHTP  190 (381)
Q Consensus       167 ~YKTk~Ck~~--g~C~r-~~C~FAH~~  190 (381)
                      .|||.+|+.|  |.|.+ ..|.|.|..
T Consensus         1 ~~k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        1 KYKTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCCcCcCccCCCCCCCCCcCCCCcC
Confidence            4799999998  88995 789999973

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.07  E-value=0.031  Score=59.28  Aligned_cols=75  Identities=25%  Similarity=0.531  Sum_probs=56.4

Q ss_pred             CCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCccC-CCCCCCCCCCCcCcchhhcCcCCccCcCCCCC--CC-CCCc
Q 016862          107 RSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG-SCKKGDACEFAHGVFECWLHPARYRTQPCKDG--GG-CKRR  182 (381)
Q Consensus       107 ~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG-~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~--g~-C~r~  182 (381)
                      .|...+.|+|.|. |.++--        -+-|.+|..+ .|++  .|.|-|+.+-+.     ..-.+|..|  ++ |.+.
T Consensus        13 ~cKk~d~c~~rh~-E~al~n--------~t~C~~w~~~~~C~k--~C~YRHSe~~~k-----r~e~~CYwe~~p~gC~k~   76 (667)
T KOG4791|consen   13 TCKKGDSCPFRHC-EAALGN--------ETVCTLWQEGRCCRK--VCRYRHSEIDKK-----RSEIPCYWENQPTGCQKL   76 (667)
T ss_pred             hhhccCcCcchhh-HHHhcC--------cchhhhhhhcCcccc--cccchhhHHhhh-----cCcccceeecCCCccCCC
Confidence            4677899999998 665211        4789999976 4553  999999976654     455789988  44 9999


Q ss_pred             ccCCCCCCcccCCCC
Q 016862          183 VCFFAHTPDQLRILP  197 (381)
Q Consensus       183 ~C~FAH~~~ELR~~p  197 (381)
                      .|-|-|+.-.|..+-
T Consensus        77 ~CgfRH~~pPLkg~l   91 (667)
T KOG4791|consen   77 NCGFRHNRPPLKGVL   91 (667)
T ss_pred             ccccccCCCchhhhc
Confidence            999999865555443

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=93.52  E-value=0.092  Score=51.53  Aligned_cols=86  Identities=27%  Similarity=0.586  Sum_probs=50.6

Q ss_pred             ceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhh----cCcCCc---
Q 016862           99 KVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW----LHPARY---  168 (381)
Q Consensus        99 KTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~----~HP~~Y---  168 (381)
                      +-..||+   |+|..-..|...|-.  +-||-|        .|+.|.-|.|.. -+|.|.|--.---    +.-..|   
T Consensus       232 rkticpkflngrcnkaedcnlshel--dprrip--------acryfllgkcnn-pncryvhihysenapicfefakygfc  300 (377)
T KOG1492|consen  232 RKTICPKFLNGRCNKAEDCNLSHEL--DPRRIP--------ACRYFLLGKCNN-PNCRYVHIHYSENAPICFEFAKYGFC  300 (377)
T ss_pred             ccccChHHhcCccCchhcCCccccc--Cccccc--------hhhhhhhccCCC-CCceEEEEeecCCCceeeeehhccee
Confidence            3457886   889999999999964  456655        355555555543 3555554310000    000000   


Q ss_pred             ------c---CcCCCCC---CCCCCcccCCCCCCcccCC
Q 016862          169 ------R---TQPCKDG---GGCKRRVCFFAHTPDQLRI  195 (381)
Q Consensus       169 ------K---Tk~Ck~~---g~C~r~~C~FAH~~~ELR~  195 (381)
                            |   --.|.++   |.|..+.|.+.|+.-..-+
T Consensus       301 elgtscknqhilqctdyamfgscnnpqcslyhgavsadv  339 (377)
T KOG1492|consen  301 ELGTSCKNQHILQCTDYAMFGSCNNPQCSLYHGAVSADV  339 (377)
T ss_pred             ccccccccceeeeecchhhhcCCCCCcceeecceeccCC
Confidence                  1   1147776   8999999999999654433

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=93.34  E-value=0.11  Score=56.61  Aligned_cols=88  Identities=24%  Similarity=0.536  Sum_probs=48.0

Q ss_pred             eeccCCCC-CCCCCCCCCCCCcccc-cCCCCCCCCccCCCCcCCccCCCCCCC-----CCCCCcCcchh--hcC--cCCc
Q 016862          100 VRKCARGR-SHDWTECPYAHPGEKA-RRRDPRKYHYSGTACPDFRKGSCKKGD-----ACEFAHGVFEC--WLH--PARY  168 (381)
Q Consensus       100 Tr~C~rg~-chd~t~CpFAH~~Ek~-RRRdP~~~~Yst~lCP~frkG~C~~Gd-----~C~FAHg~~El--~~H--P~~Y  168 (381)
                      +.+|.++- |. ...|-|+|+.-.. ----|.+-.  ...|-.-. -+|+.|.     .|.|.|+-.-.  .+.  |..+
T Consensus       544 l~~Cky~~~Ct-~a~Ce~~HPtaa~~~~s~p~k~f--a~~~~ks~-p~Ck~~~kCtasDC~~sH~~~~~pvq~t~ip~~~  619 (681)
T KOG3702|consen  544 LTRCKYGPACT-SAECEFAHPTAAENAKSLPNKKF--ASKCLKSH-PGCKFGKKCTASDCNYSHAGRRIPVQPTRIPPPF  619 (681)
T ss_pred             eccccCCCcCC-chhhhhcCCcchhhhhccccccc--cccceecc-cccccccccccccCcccccCCCCCCccccCCCCC
Confidence            45677754 44 7889999984110 011121100  11111111 1355543     67899985432  111  2222


Q ss_pred             ----cCcCCCCCCCCCCcccCCCCCCc
Q 016862          169 ----RTQPCKDGGGCKRRVCFFAHTPD  191 (381)
Q Consensus       169 ----KTk~Ck~~g~C~r~~C~FAH~~~  191 (381)
                          -+.+|+.+++|....|.|.|-..
T Consensus       620 ~~~ti~~~CrY~pnCrnm~C~F~HPk~  646 (681)
T KOG3702|consen  620 PGGTIRGLCRYRPNCRNMQCKFYHPKT  646 (681)
T ss_pred             CCCCccccceeccCcCCccccccCCcc
Confidence                25668888999999999999743

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=93.11  E-value=0.8  Score=45.73  Aligned_cols=80  Identities=29%  Similarity=0.553  Sum_probs=50.5

Q ss_pred             cceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCC-ccCCCCCCCCCCCCcCcchhhcCcCCccCcCC
Q 016862           98 FKVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDF-RKGSCKKGDACEFAHGVFECWLHPARYRTQPC  173 (381)
Q Consensus        98 FKTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~f-rkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~C  173 (381)
                      .....|..   +.|.....|.|.|..  .+|+ +     .+..|..| .+|.|..|..|.|.|..      |+. +-..|
T Consensus       102 ~s~V~c~~~~~g~c~s~~~c~~lh~~--d~~~-s-----~~~~c~~Fs~~G~cs~g~~c~~~h~d------p~~-~~~~~  166 (285)
T COG5084         102 SSSVVCKFFLRGLCKSGFSCEFLHEY--DLRS-S-----QGPPCRSFSLKGSCSSGPSCGYSHID------PDS-FAGNC  166 (285)
T ss_pred             cCCcccchhccccCcCCCccccccCC--Cccc-c-----cCCCcccccccceeccCCCCCccccC------ccc-ccccc
Confidence            44445553   556667788888864  2222 2     26788888 57888888888888885      211 11224


Q ss_pred             CCC-----CCCCC-cccCCCCCCcc
Q 016862          174 KDG-----GGCKR-RVCFFAHTPDQ  192 (381)
Q Consensus       174 k~~-----g~C~r-~~C~FAH~~~E  192 (381)
                      ..+     +.|+. ..|.|-|+..-
T Consensus       167 ~~~~~~~~~f~p~g~~c~~~H~~~~  191 (285)
T COG5084         167 DQYSGATYGFCPLGASCKFSHTLKR  191 (285)
T ss_pred             cccCcccccccCCCCcccccccccc
Confidence            443     56774 78888888763

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=92.44  E-value=0.12  Score=51.56  Aligned_cols=62  Identities=32%  Similarity=0.636  Sum_probs=50.5

Q ss_pred             CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCcc--CcCCCCC---CCCCC-cccCC
Q 016862          113 ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYR--TQPCKDG---GGCKR-RVCFF  186 (381)
Q Consensus       113 ~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YK--Tk~Ck~~---g~C~r-~~C~F  186 (381)
                      .|++-|-  +     |  +.|+...|+.|..|.|+.|+.|.|+|+..       +-+  +-.|+.|   |.|.. ..|.+
T Consensus        91 s~~~~~~--~-----~--~~~s~V~c~~~~~g~c~s~~~c~~lh~~d-------~~~s~~~~c~~Fs~~G~cs~g~~c~~  154 (285)
T COG5084          91 STPNNHV--N-----P--VLSSSVVCKFFLRGLCKSGFSCEFLHEYD-------LRSSQGPPCRSFSLKGSCSSGPSCGY  154 (285)
T ss_pred             cCCcccc--C-----c--cccCCcccchhccccCcCCCccccccCCC-------cccccCCCcccccccceeccCCCCCc
Confidence            6777774  2     1  15778999999999999999999999953       333  6679998   89995 89999


Q ss_pred             CCCC
Q 016862          187 AHTP  190 (381)
Q Consensus       187 AH~~  190 (381)
                      .|..
T Consensus       155 ~h~d  158 (285)
T COG5084         155 SHID  158 (285)
T ss_pred             cccC
Confidence            9996

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=91.43  E-value=0.14  Score=31.56  Aligned_cols=11  Identities=55%  Similarity=1.467  Sum_probs=6.7

Q ss_pred             CCCCCCCCCCc
Q 016862          146 CKKGDACEFAH  156 (381)
Q Consensus       146 C~~Gd~C~FAH  156 (381)
                      |++|++|.|.|
T Consensus         8 C~~~~~C~f~H   18 (19)
T PF14608_consen    8 CTNGDNCPFSH   18 (19)
T ss_pred             CCCCCcCccCC
Confidence            66666666655

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=90.50  E-value=0.16  Score=54.27  Aligned_cols=59  Identities=27%  Similarity=0.503  Sum_probs=40.3

Q ss_pred             cCCCCcCCccC---CCCCCCCCCCCcCcchhhcC--cCCccCcCCCCC---CCCCC-cccCCC--CCCcccC
Q 016862          134 SGTACPDFRKG---SCKKGDACEFAHGVFECWLH--PARYRTQPCKDG---GGCKR-RVCFFA--HTPDQLR  194 (381)
Q Consensus       134 st~lCP~frkG---~C~~Gd~C~FAHg~~El~~H--P~~YKTk~Ck~~---g~C~r-~~C~FA--H~~~ELR  194 (381)
                      ...|||....|   .|.+||+|.|.|.+.-.+..  |+.=  -.|.-|   |.|++ -.|+|+  |-..+-+
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig--~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~  144 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG--PSCPVFESLGFCPYGFKCRFLGAHLDIEGN  144 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC--CccceeeccccCCccceeehhhcccCcccc
Confidence            46799998865   79999999999998654432  1111  237766   88996 679995  5544444

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=90.01  E-value=0.13  Score=49.48  Aligned_cols=32  Identities=28%  Similarity=0.694  Sum_probs=27.7

Q ss_pred             CCCCccCCCCcCCc-cCCCCCCCCCCCCcCcch
Q 016862          129 RKYHYSGTACPDFR-KGSCKKGDACEFAHGVFE  160 (381)
Q Consensus       129 ~~~~Yst~lCP~fr-kG~C~~Gd~C~FAHg~~E  160 (381)
                      ..+.|.+..|.+|+ +|.|-|||.|.|.|....
T Consensus       135 ~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         135 EVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             ceeecCcccccchhhcccccCCchhhhhhhhhh
Confidence            34668899999998 699999999999999763

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=89.07  E-value=0.22  Score=52.10  Aligned_cols=25  Identities=40%  Similarity=0.962  Sum_probs=23.4

Q ss_pred             cCCCCcCCccCCCCCCCCCCCCcCc
Q 016862          134 SGTACPDFRKGSCKKGDACEFAHGV  158 (381)
Q Consensus       134 st~lCP~frkG~C~~Gd~C~FAHg~  158 (381)
                      +.++|++|..|.|+.|.+|.|.||.
T Consensus       139 sMkpC~ffLeg~CRF~enCRfSHG~  163 (486)
T KOG2185|consen  139 SMKPCKFFLEGRCRFGENCRFSHGL  163 (486)
T ss_pred             hhccchHhhccccccCcccccccCc
Confidence            5679999999999999999999995

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=87.76  E-value=0.26  Score=52.72  Aligned_cols=59  Identities=29%  Similarity=0.544  Sum_probs=43.4

Q ss_pred             ceeccCC---C---CCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCcc-CCCCCCCCCCCC--cCcch
Q 016862           99 KVRKCAR---G---RSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK-GSCKKGDACEFA--HGVFE  160 (381)
Q Consensus        99 KTr~C~r---g---~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frk-G~C~~Gd~C~FA--Hg~~E  160 (381)
                      +.++||.   +   .|..+++|-|-|..+--.-..+..+   ...||-|.. |.|++|-+|.|+  |-..|
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Di---g~~Cp~f~s~G~Cp~G~~CRFl~aHld~~  142 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDI---GPSCPVFESLGFCPYGFKCRFLGAHLDIE  142 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCccc---CCccceeeccccCCccceeehhhcccCcc
Confidence            7899996   2   4899999999998764333333222   468999985 899999999996  54443

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=87.35  E-value=0.43  Score=29.43  Aligned_cols=18  Identities=44%  Similarity=0.995  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCc-ccCCCCC
Q 016862          172 PCKDGGGCKRR-VCFFAHT  189 (381)
Q Consensus       172 ~Ck~~g~C~r~-~C~FAH~  189 (381)
                      +|+.|.+|... .|.|+|.
T Consensus         1 ~Ck~~~~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPNCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCCCCCCCcCccCCc
Confidence            58988889975 9999993

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.00  E-value=0.26  Score=49.53  Aligned_cols=31  Identities=32%  Similarity=0.853  Sum_probs=27.3

Q ss_pred             CCCccCCCCcCCc-cCCCCCCCCCCCCcCcch
Q 016862          130 KYHYSGTACPDFR-KGSCKKGDACEFAHGVFE  160 (381)
Q Consensus       130 ~~~Yst~lCP~fr-kG~C~~Gd~C~FAHg~~E  160 (381)
                      ++-|.+..|.+|+ +|.|-+||+|.|.|...-
T Consensus       181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~D  212 (313)
T KOG1813|consen  181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSD  212 (313)
T ss_pred             eeecCchhhhhhHhhCcccccchhhhhhhhhh
Confidence            4668899999998 699999999999998753

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=84.66  E-value=1.5  Score=48.16  Aligned_cols=82  Identities=24%  Similarity=0.488  Sum_probs=52.5

Q ss_pred             eccceeccCCCCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCC---ccCCCCCCCCCCCCcCcchhhcCcCCccCcC
Q 016862           96 YEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDF---RKGSCKKGDACEFAHGVFECWLHPARYRTQP  172 (381)
Q Consensus        96 ~~FKTr~C~rg~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~f---rkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~  172 (381)
                      ..|-...|..+..---..|+|.|.+    |+.|-.  |++..|+.=   ..+-|+|+-+|.---=   .+|||     +.
T Consensus       581 ~~ks~p~Ck~~~kCtasDC~~sH~~----~~~pvq--~t~ip~~~~~~ti~~~CrY~pnCrnm~C---~F~HP-----k~  646 (681)
T KOG3702|consen  581 CLKSHPGCKFGKKCTASDCNYSHAG----RRIPVQ--PTRIPPPFPGGTIRGLCRYRPNCRNMQC---KFYHP-----KT  646 (681)
T ss_pred             ceecccccccccccccccCcccccC----CCCCCc--cccCCCCCCCCCccccceeccCcCCccc---cccCC-----cc
Confidence            3444556666543334679999985    555554  556666653   1367777776632111   23555     67


Q ss_pred             CCCCCCCC-CcccCCCCCCc
Q 016862          173 CKDGGGCK-RRVCFFAHTPD  191 (381)
Q Consensus       173 Ck~~g~C~-r~~C~FAH~~~  191 (381)
                      |+...+|. +..|.|+|-.-
T Consensus       647 cRf~~~c~~~~sc~fYh~r~  666 (681)
T KOG3702|consen  647 CRFNTNCPNNPSCTFYHERP  666 (681)
T ss_pred             ccccccCCCCcccccccCCc
Confidence            99999999 68999999743

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=84.34  E-value=0.22  Score=49.05  Aligned_cols=60  Identities=35%  Similarity=0.636  Sum_probs=45.1

Q ss_pred             ccCCCCcCCccCCCCCCCCCCCCcCcchhhcC--cCCc-------------------cCcCCCCC---------C---CC
Q 016862          133 YSGTACPDFRKGSCKKGDACEFAHGVFECWLH--PARY-------------------RTQPCKDG---------G---GC  179 (381)
Q Consensus       133 Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~H--P~~Y-------------------KTk~Ck~~---------g---~C  179 (381)
                      -++..|-.|..+.|..|+.|.|+|+..|.+-.  |++|                   -.+.|+.|         |   .|
T Consensus        83 pK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~C  162 (299)
T COG5252          83 PKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTC  162 (299)
T ss_pred             chhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeC
Confidence            46789999999999999999999998887633  4444                   22347765         1   59


Q ss_pred             CC--cccCCCCCCcc
Q 016862          180 KR--RVCFFAHTPDQ  192 (381)
Q Consensus       180 ~r--~~C~FAH~~~E  192 (381)
                      +.  ..|-|.|..-+
T Consensus       163 Png~~~C~y~H~Lp~  177 (299)
T COG5252         163 PNGNMRCSYIHKLPD  177 (299)
T ss_pred             CCCCceeeeeeccCc
Confidence            85  58999998655

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=84.13  E-value=0.13  Score=50.70  Aligned_cols=62  Identities=29%  Similarity=0.597  Sum_probs=42.9

Q ss_pred             ceeccCC---CCCCCCCCCCCCCCcccccC-CCCCCCCc-----------------cCCCCcCCcc----C------CCC
Q 016862           99 KVRKCAR---GRSHDWTECPYAHPGEKARR-RDPRKYHY-----------------SGTACPDFRK----G------SCK  147 (381)
Q Consensus        99 KTr~C~r---g~chd~t~CpFAH~~Ek~RR-RdP~~~~Y-----------------st~lCP~frk----G------~C~  147 (381)
                      |+..|..   +.|.+++.|-|+|.-|..|| ..|.+|.-                 .-..|..|..    |      .|+
T Consensus        84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CP  163 (299)
T COG5252          84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCP  163 (299)
T ss_pred             hhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCC
Confidence            6667765   45788999999999766544 23333220                 1237888862    3      899


Q ss_pred             CC-CCCCCCcCcch
Q 016862          148 KG-DACEFAHGVFE  160 (381)
Q Consensus       148 ~G-d~C~FAHg~~E  160 (381)
                      +| +.|.|-|...+
T Consensus       164 ng~~~C~y~H~Lp~  177 (299)
T COG5252         164 NGNMRCSYIHKLPD  177 (299)
T ss_pred             CCCceeeeeeccCc
Confidence            97 79999999766

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=82.89  E-value=0.67  Score=48.64  Aligned_cols=38  Identities=34%  Similarity=0.587  Sum_probs=30.5

Q ss_pred             chhhcCcCCccCcCCCCC--CCCC-CcccCCCCCCc----ccCCC
Q 016862          159 FECWLHPARYRTQPCKDG--GGCK-RRVCFFAHTPD----QLRIL  196 (381)
Q Consensus       159 ~El~~HP~~YKTk~Ck~~--g~C~-r~~C~FAH~~~----ELR~~  196 (381)
                      -=+++||+---.++|++|  |.|+ +..|+|.||..    .||..
T Consensus       129 RVlfl~PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~y  173 (486)
T KOG2185|consen  129 RVLFLTPTHESMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNY  173 (486)
T ss_pred             EEEeecCcchhhccchHhhccccccCcccccccCcccchhhcccC
Confidence            335678888899999999  9999 57899999974    56643

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=82.87  E-value=0.29  Score=49.45  Aligned_cols=30  Identities=33%  Similarity=0.774  Sum_probs=25.8

Q ss_pred             ccCCCCcCCccCCCCCCCCCCCCcCcchhh
Q 016862          133 YSGTACPDFRKGSCKKGDACEFAHGVFECW  162 (381)
Q Consensus       133 Yst~lCP~frkG~C~~Gd~C~FAHg~~El~  162 (381)
                      =++.+|-.|..|.|..|+.|.|+|...+.+
T Consensus        90 PKSvvCafFk~g~C~KG~kCKFsHdl~~~~  119 (343)
T KOG1763|consen   90 PKSVVCAFFKQGTCTKGDKCKFSHDLAVER  119 (343)
T ss_pred             chHHHHHHHhccCCCCCCcccccchHHHhh
Confidence            357899999999999999999999975544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	6e-17
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	8e-17
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-10
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-09
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	2e-09
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	3e-09
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	2e-08
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	5e-04

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 74.5 bits (182), Expect = 6e-17
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 120 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG-- 176
           G  A ++  R        C +F++G+C +G+  C FAH      +  +      C D   
Sbjct: 7   GSTATQKLLRTDKLE--VCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK 64

Query: 177 GGCKRRVCFFAHTPDQLR--ILPQQSPRSASA 206
           G C R  C + H P  L+  I   Q   + +A
Sbjct: 65  GRCMREKCKYFHPPAHLQAKIKAAQHQANQAA 96

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 73.5 bits (180), Expect = 8e-17
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
            C ++++G+C +G+  C FAH      +         C D   G C R  C + H P  L
Sbjct: 8   VCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHL 67

Query: 194 R 194
           +
Sbjct: 68  Q 68

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 55.3 bits (133), Expect = 3e-10
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 138 CPDFRK-GSCKKGDACEFAHGVFE--CWLHPARYRTQPCKD---GGGCKRRV-CFFAHTP 190
           C  + + G C+ G  C+FAHG+ E        +Y+T+ C      G C     C F H P
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNP 74

Query: 191 DQ 192
            +
Sbjct: 75  TE 76

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 14/82 (17%)

Query: 117 AHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKD- 175
            H           K       C  + +G CKKGD CEF H            +   C   
Sbjct: 2   GHHHHHHSHMSGEKT----VVCKHWLRGLCKKGDQCEFLH-------EYDMTKMSECYFY 50

Query: 176 --GGGCKRRVCFFAHTPDQLRI 195
              G C  + C F H   + +I
Sbjct: 51  SKFGECSNKECPFLHIDPESKI 72

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKD--GGGCKRRVCFFAHTPDQL 193
            C  F++G+C + D  C+FAH    C +   R     C D   G C R  C + H P  L
Sbjct: 19  VCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVI--ACFDSLKGRCSRENCKYLHPPTHL 76

Query: 194 R--ILPQQSPRSA 204
           +  +     P S 
Sbjct: 77  KTQLEINSGPSSG 89

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83

 Score = 52.8 bits (126), Expect = 3e-09
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKD--GGGCKRRVCFFAHTPDQL 193
            C +F++G+C + D  C+FAH    C +   R     C D   G C R  C + H P  L
Sbjct: 11  VCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIA--CFDSLKGRCSRENCKYLHPPPHL 68

Query: 194 RILPQQSPR 202
           +   + + R
Sbjct: 69  KTQLEINGR 77

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 138 CPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKD---GGGCKRRVCFFAHTPDQLR 194
           C  + +G CKKGD CEF H            +   C      G C  + C F H   + +
Sbjct: 13  CKHWLRGLCKKGDQCEFLH-------EYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 65

Query: 195 ILPQQSPRSAS 205
           I        +S
Sbjct: 66  IKDCPWSGPSS 76

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 123 ARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRR 182
                  +       C  +  G C + + C + HG F C L+   + T  C +G  C   
Sbjct: 1   GSSGSSGELPKKRELCKFYITGFCARAENCPYMHGDFPCKLY---HTTGNCINGDDCM-- 55

Query: 183 VCFFAHTP 190
              F+H P
Sbjct: 56  ---FSHDP 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 52/379 (13%), Positives = 106/379 (27%), Gaps = 113/379 (29%)

Query: 3   LGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIP--ETYAALH 60
           + E  R N   L+ P       P+          +   N +  ++  Y++   + Y  L 
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLR 141

Query: 61  RYLPSNDPDLDSDSD-----MSG----------LDPDSPVDAYSCDHFRMYEFKVRKCAR 105
           + L      L    +     + G                        F+++   ++ C  
Sbjct: 142 QALLE----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD---FKIFWLNLKNCNS 194

Query: 106 GRS---HDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW 162
             +                   + DP     + T+  D                      
Sbjct: 195 PETVLEMLQKLL---------YQIDP-----NWTSRSD---------------------- 218

Query: 163 LHPARYRTQPCKDGGGCKRRVCFFAHT--PDQLRILPQ-QSPRSASASDSPSCAKTLPFL 219
            H +  +           RR          + L +L   Q+ ++ +A +  SC K L   
Sbjct: 219 -HSSNIK-LRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFN-LSC-KIL-LT 271

Query: 220 SSPES--ASPPPSPRTESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVG 277
           +  +        +  T   + H  S +L    +  ++  + +    + + LP     +V 
Sbjct: 272 TRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLLKYLDC---RPQDLPR----EV- 322

Query: 278 GVGGSPGYGSPRGSMLRPGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVES 337
            +  +P   S     +R G     +T                   W+    + +   +ES
Sbjct: 323 -LTTNPRRLSIIAESIRDG----LATWDN----------------WKHVNCDKLTTIIES 361

Query: 338 G------RDLRAKMFERLS 350
                   + R KMF+RLS
Sbjct: 362 SLNVLEPAEYR-KMFDRLS 379

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 27/80 (33%)

Query: 113 ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQP 172
            C Y H               S   C +    +C + D C F H +            + 
Sbjct: 22  RCKYRHA-------------RSHIMCREG--ANCTRID-CLFGHPI-----------NED 54

Query: 173 CKDGGGCKRRVCFFAHTPDQ 192
           C+ G  CK   C F H P +
Sbjct: 55  CRFGVNCKNIYCLFRHPPGR 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.43
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.1
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.01
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.79
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.64
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.63
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.57
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.53
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.28
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.25
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.05
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.01
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	97.85
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.72
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.63
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.31
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.28
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	96.58
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.07
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	92.15
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	87.49
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	85.16

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.43  E-value=4e-14  Score=109.50  Aligned_cols=62  Identities=32%  Similarity=0.762  Sum_probs=30.2

Q ss_pred             CCccCCCCcCCc-cCCCCCCCCCCCCcCcchhhcC--cCCccCcCCCCC---CCCCC-cccCCCCCCcc
Q 016862          131 YHYSGTACPDFR-KGSCKKGDACEFAHGVFECWLH--PARYRTQPCKDG---GGCKR-RVCFFAHTPDQ  192 (381)
Q Consensus       131 ~~Yst~lCP~fr-kG~C~~Gd~C~FAHg~~El~~H--P~~YKTk~Ck~~---g~C~r-~~C~FAH~~~E  192 (381)
                      -+|++++|+.|. +|.|++|++|.|+|+..|++..  ...|||++|+.|   |.|++ ..|.|+|+.+|
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            468899999995 8999999999999999999852  237999999976   89995 89999999876

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.10  E-value=2.1e-11  Score=94.17  Aligned_cols=64  Identities=30%  Similarity=0.624  Sum_probs=25.1

Q ss_pred             eccceeccCC----CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCc-cCCCCCCCCCCCCcCcch
Q 016862           96 YEFKVRKCAR----GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFR-KGSCKKGDACEFAHGVFE  160 (381)
Q Consensus        96 ~~FKTr~C~r----g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~fr-kG~C~~Gd~C~FAHg~~E  160 (381)
                      ..|||++|..    +.|..+..|.|+|..+ +.|..+..-.|++.+|+.|. +|.|++|++|.|+|+..|
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~-e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLG-ELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSC-CGGGTC---------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCCh-hhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            3689999984    6799999999999965 44544444468899999876 799999999999999876

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.01  E-value=2.1e-11  Score=94.45  Aligned_cols=61  Identities=28%  Similarity=0.714  Sum_probs=56.6

Q ss_pred             CCCCcCCccCCCCCCC-CCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccCC
Q 016862          135 GTACPDFRKGSCKKGD-ACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLRI  195 (381)
Q Consensus       135 t~lCP~frkG~C~~Gd-~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR~  195 (381)
                      ...|++|.+|.|.+|+ .|.|+|..++++..+..+|+..|.+|  |.|.+..|.|.|.+.+|+.
T Consensus         6 ~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~   69 (70)
T 3d2q_A            6 LEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA   69 (70)
T ss_dssp             EEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred             chhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence            4689999999999999 59999999999999999999999998  9999999999999988874

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=2.2e-09  Score=84.41  Aligned_cols=61  Identities=30%  Similarity=0.562  Sum_probs=50.7

Q ss_pred             CCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC---CCCCCcccCCCCCCcccCC
Q 016862          128 PRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDG---GGCKRRVCFFAHTPDQLRI  195 (381)
Q Consensus       128 P~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~---g~C~r~~C~FAH~~~ELR~  195 (381)
                      |....+++.+|+.|.+|.|.+|++|.|+|....       -|+.+|+.|   |.|.+..|.|+|...+.+.
T Consensus         3 p~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~   66 (77)
T 2d9n_A            3 SGSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESKI   66 (77)
T ss_dssp             CCCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSSC
T ss_pred             CCCCCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCccccC
Confidence            444557789999999999999999999999654       267789998   8999999999999766553

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.64  E-value=1.3e-08  Score=83.71  Aligned_cols=48  Identities=31%  Similarity=0.752  Sum_probs=43.3

Q ss_pred             CccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC---CCCCC-cccCCCCCCc
Q 016862          132 HYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDG---GGCKR-RVCFFAHTPD  191 (381)
Q Consensus       132 ~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~---g~C~r-~~C~FAH~~~  191 (381)
                      .+++.+|+.|.+|.|.+|++|.|+|.            +.+|+.|   |.|++ ..|.|+|...
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            36799999999999999999999999            6789987   89996 8999999864

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=4.1e-09  Score=83.02  Aligned_cols=42  Identities=26%  Similarity=0.561  Sum_probs=38.2

Q ss_pred             CCCCcCCccCCCCCCCCCCCCcCcchhhc---CcCCccCcCCCCC
Q 016862          135 GTACPDFRKGSCKKGDACEFAHGVFECWL---HPARYRTQPCKDG  176 (381)
Q Consensus       135 t~lCP~frkG~C~~Gd~C~FAHg~~El~~---HP~~YKTk~Ck~~  176 (381)
                      +++|..|.+|.|++|++|.||||..||+-   .+..+|+++|+..
T Consensus        20 ~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar   64 (69)
T 2d9m_A           20 FSICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS   64 (69)
T ss_dssp             CSBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCC
T ss_pred             cccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHh
Confidence            49999999999999999999999999986   5778899999875

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=2e-09  Score=88.87  Aligned_cols=61  Identities=30%  Similarity=0.718  Sum_probs=55.0

Q ss_pred             CCCCcCCccCCCCCCC-CCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccCC
Q 016862          135 GTACPDFRKGSCKKGD-ACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLRI  195 (381)
Q Consensus       135 t~lCP~frkG~C~~Gd-~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR~  195 (381)
                      ...|++|.+|.|.+|| .|.|+|...+.+..+...++..|.+|  |.|.+..|.|.|...+|+.
T Consensus        20 ~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~   83 (98)
T 2e5s_A           20 LEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA   83 (98)
T ss_dssp             EEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred             hhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence            5789999999999999 79999999888777778999999999  9999999999999887753

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.53  E-value=1.3e-08  Score=79.66  Aligned_cols=55  Identities=31%  Similarity=0.624  Sum_probs=46.1

Q ss_pred             ccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC---CCCCCcccCCCCCCcccC
Q 016862          133 YSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDG---GGCKRRVCFFAHTPDQLR  194 (381)
Q Consensus       133 Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~---g~C~r~~C~FAH~~~ELR  194 (381)
                      +++.+|+.|.+|.|.+|++|.|+|....       -|+.+|+.|   |.|.+..|.|.|...+.+
T Consensus        14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k   71 (72)
T 2rhk_C           14 EKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMSECYFYSKFGECSNKECPFLHIDPESK   71 (72)
T ss_dssp             CCCSBCHHHHTTCCCCGGGSSSBCSCCT-------TSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred             CcCeeCHHHhcCCCCCCCCCCCcccccc-------ccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence            4578999999999999999999999542       378899997   899999999999876554

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.28  E-value=2.5e-07  Score=72.65  Aligned_cols=62  Identities=23%  Similarity=0.418  Sum_probs=50.1

Q ss_pred             ccceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCcc-CCCCCCCCCCCCcCcchhhcCcCCccCcC
Q 016862           97 EFKVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK-GSCKKGDACEFAHGVFECWLHPARYRTQP  172 (381)
Q Consensus        97 ~FKTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frk-G~C~~Gd~C~FAHg~~El~~HP~~YKTk~  172 (381)
                      ..|+..|..   |.|..+++|.|+|....  +        ++..|..|.+ |.|. |++|.|+|...+       -|+..
T Consensus         7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~--~--------~~~~C~~f~~~G~C~-~~~C~f~H~~~~-------~~~~~   68 (77)
T 2d9n_A            7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM--T--------KMPECYFYSKFGECS-NKECPFLHIDPE-------SKIKD   68 (77)
T ss_dssp             CCTTSBCHHHHTTCCSCTTSSSSBCSCCT--T--------TSCBCHHHHHTCCCC-CSSCSSBCCCTT-------SSCSS
T ss_pred             CCcceeCHhHccCcCCCCCCCCCcccccc--C--------cCCCCcccCCCCccC-CCCeeccCCCcc-------ccCCC
Confidence            367888874   88999999999998532  1        2458999998 9999 899999999653       46888


Q ss_pred             CCCC
Q 016862          173 CKDG  176 (381)
Q Consensus       173 Ck~~  176 (381)
                      |.+|
T Consensus        69 C~~f   72 (77)
T 2d9n_A           69 CPWS   72 (77)
T ss_dssp             SSCC
T ss_pred             Cccc
Confidence            9887

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.25  E-value=4.7e-07  Score=74.48  Aligned_cols=47  Identities=32%  Similarity=0.670  Sum_probs=41.8

Q ss_pred             ccceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCC-ccCCCCCCCCCCCCcCc
Q 016862           97 EFKVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDF-RKGSCKKGDACEFAHGV  158 (381)
Q Consensus        97 ~FKTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~f-rkG~C~~Gd~C~FAHg~  158 (381)
                      .+|+..|..   |.|..+.+|+|+|.               +.+|+.| .+|.|++|++|.|+|..
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~   60 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDP   60 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence            478889986   78999999999997               5789999 58999999999999985

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.05  E-value=9.1e-07  Score=71.18  Aligned_cols=59  Identities=34%  Similarity=0.826  Sum_probs=45.7

Q ss_pred             cCCCCcCCccCCCCCCC-CCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccC
Q 016862          134 SGTACPDFRKGSCKKGD-ACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLR  194 (381)
Q Consensus       134 st~lCP~frkG~C~~Gd-~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR  194 (381)
                      +-..|++|.+|.|.+|| .|.|+|-...+..-  .-+...|.+|  |.|.+..|.|.|.+..|.
T Consensus         8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~--~~~~~vC~dflkG~C~r~~C~y~H~~~~l~   69 (83)
T 3d2n_A            8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPPHLK   69 (83)
T ss_dssp             EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE--TTEEECCHHHHTTCCCCSSCSSCCCCHHHH
T ss_pred             cchhcHHHhcCCCCCCCCCCCCcCCCcccccc--CCceeehhHhhhccccCCCcceeCChHHHH
Confidence            35689999999999997 99999996542211  3456779998  899988999999886654

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.01  E-value=1.6e-06  Score=67.02  Aligned_cols=60  Identities=27%  Similarity=0.618  Sum_probs=45.3

Q ss_pred             ceeccC---CCCCCCCC-CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhh
Q 016862           99 KVRKCA---RGRSHDWT-ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW  162 (381)
Q Consensus        99 KTr~C~---rg~chd~t-~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~  162 (381)
                      |+..|.   +|.|.+++ +|+|+|..+.. .-.+  -.+++..|.+|.+|.|.+| +|.|.|...+|+
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~-~~~~--~~~~~~vC~~flkG~C~r~-~C~y~H~~~~L~   68 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPADST-MIDT--NDNTVTVCMDYIKGRCSRE-KCKYFHPPAHLQ   68 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCCTTS-CCBT--TTTEEEBCHHHHTTCCCCT-TCCSBCCCHHHH
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCcccc-cccc--cCCcceeccccCcCCCCCC-CcCeeCCHHHHh
Confidence            455665   48899898 69999985421 1111  2345889999999999999 999999988875

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=97.85  E-value=2.2e-06  Score=70.01  Aligned_cols=58  Identities=34%  Similarity=0.832  Sum_probs=46.9

Q ss_pred             CCCCcCCccCCCCCCC-CCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccC
Q 016862          135 GTACPDFRKGSCKKGD-ACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLR  194 (381)
Q Consensus       135 t~lCP~frkG~C~~Gd-~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR  194 (381)
                      ...|++|.+|.|.+|+ .|.|+|-...+..-  .-+...|.+|  |.|.+..|.|.|.+..|.
T Consensus        17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dflkG~C~r~~Cky~H~~~hl~   77 (89)
T 2rpp_A           17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHLK   77 (89)
T ss_dssp             ECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHHHTCCCCTTCCSBCCCHHHH
T ss_pred             hhhchHHhcCCCCCCCCCCCCcCCCcccccc--CCceeeehhhhhCcCCCCCcceecCHHHHH
Confidence            5689999999999998 99999986543221  2357789999  999999999999986554

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.72  E-value=5.7e-06  Score=68.25  Aligned_cols=63  Identities=25%  Similarity=0.514  Sum_probs=48.4

Q ss_pred             eccceeccCC---CCCCCCC-CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhh
Q 016862           96 YEFKVRKCAR---GRSHDWT-ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW  162 (381)
Q Consensus        96 ~~FKTr~C~r---g~chd~t-~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~  162 (381)
                      ..-|+..|..   |.|.+++ +|.|+|..+.. +.++  ...+...|.+|.+|.|.+| +|.|.|...++.
T Consensus        16 ~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~-~~~~--~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l~   82 (98)
T 2e5s_A           16 RTDKLEVCREFQRGNCARGETDCRFAHPADST-MIDT--SDNTVTVCMDYIKGRCMRE-KCKYFHPPAHLQ   82 (98)
T ss_dssp             CSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCC-SCCT--TTCEEEBCHHHHHTCCCCT-TCCSBCCCHHHH
T ss_pred             ChhhhhhhHHHhcCcCCCCCCCCCCcCCchhc-cccc--cCCccccchhhccCCCCCC-CcCccCChHHHH
Confidence            3456777874   8899998 79999996432 2222  2345789999999999999 999999987765

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.63  E-value=9.5e-06  Score=63.30  Aligned_cols=54  Identities=24%  Similarity=0.436  Sum_probs=43.8

Q ss_pred             eccceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCcc-CCCCCCCCCCCCcCcch
Q 016862           96 YEFKVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK-GSCKKGDACEFAHGVFE  160 (381)
Q Consensus        96 ~~FKTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frk-G~C~~Gd~C~FAHg~~E  160 (381)
                      ...|+..|..   |.|.+++.|.|+|....  +        ++..|..|.+ |.|.+ ++|.|.|...+
T Consensus        12 ~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~--~--------~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           12 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM--T--------KMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             SCCCCSBCHHHHTTCCCCGGGSSSBCSCCT--T--------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CCCcCeeCHHHhcCCCCCCCCCCCcccccc--c--------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            3467788864   88999999999998532  1        2568999999 99999 99999998654

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.31  E-value=2.4e-05  Score=61.62  Aligned_cols=29  Identities=28%  Similarity=0.439  Sum_probs=26.0

Q ss_pred             CccCcCCCCC--CCCCC-cccCCCCCCcccCC
Q 016862          167 RYRTQPCKDG--GGCKR-RVCFFAHTPDQLRI  195 (381)
Q Consensus       167 ~YKTk~Ck~~--g~C~r-~~C~FAH~~~ELR~  195 (381)
                      ..|+++|+.|  |.|++ ..|.|||+.+|||.
T Consensus        17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           17 TGYFSICDRYMNGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred             CCCcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence            3488999998  99996 89999999999996

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.28  E-value=0.00013  Score=58.63  Aligned_cols=60  Identities=25%  Similarity=0.457  Sum_probs=45.5

Q ss_pred             ccceeccCC---CCCCCCC-CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhh
Q 016862           97 EFKVRKCAR---GRSHDWT-ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW  162 (381)
Q Consensus        97 ~FKTr~C~r---g~chd~t-~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~  162 (381)
                      ..|+..|..   |.|.+++ +|.|+|.....     ..-.-+...|.+|.+|.|.++ +|.|.|...++.
T Consensus         6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~-----~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~l~   69 (83)
T 3d2n_A            6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSC-----QVENGRVIACFDSLKGRCSRE-NCKYLHPPPHLK   69 (83)
T ss_dssp             GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTC-----CEETTEEECCHHHHTTCCCCS-SCSSCCCCHHHH
T ss_pred             cccchhcHHHhcCCCCCCCCCCCCcCCCccc-----cccCCceeehhHhhhccccCC-CcceeCChHHHH
Confidence            357778875   8899885 99999985321     111233579999999999998 999999987654

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=96.58  E-value=0.00064  Score=55.41  Aligned_cols=57  Identities=26%  Similarity=0.528  Sum_probs=42.2

Q ss_pred             ceeccCC---CCCCCCC-CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchh
Q 016862           99 KVRKCAR---GRSHDWT-ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFEC  161 (381)
Q Consensus        99 KTr~C~r---g~chd~t-~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El  161 (381)
                      |+..|..   |.|.+++ +|.|+|..+.. .    ...-+...|-+|.+|.|.++ .|.|.|....+
T Consensus        16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~-~----v~~~~~~vC~dflkG~C~r~-~Cky~H~~~hl   76 (89)
T 2rpp_A           16 TLEVCRQFQRGTCSRSDEECKFAHPPKSC-Q----VENGRVIACFDSLKGRCSRE-NCKYLHPPTHL   76 (89)
T ss_dssp             EECBCHHHHHTCCCCCTTTSSSBCCCSSS-C----CBTTBEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred             hhhhchHHhcCCCCCCCCCCCCcCCCccc-c----ccCCceeeehhhhhCcCCCC-CcceecCHHHH
Confidence            4556753   7888887 99999985421 0    11223679999999999998 99999997654

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=95.07  E-value=0.00098  Score=53.66  Aligned_cols=63  Identities=29%  Similarity=0.755  Sum_probs=46.1

Q ss_pred             eccCCC-CCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCCCCC
Q 016862          101 RKCARG-RSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGC  179 (381)
Q Consensus       101 r~C~rg-~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~g~C  179 (381)
                      ..|..+ .|.+ .+|+|.|...             ..+|++..  .|.+ ..|.|+|-.           .+.|+.+..|
T Consensus        10 e~CKf~~~Ctn-~~C~f~Hp~~-------------~~~Cr~g~--~C~~-~~C~f~HP~-----------~~~Crf~~~C   61 (80)
T 2lhn_A           10 EQCKFGTHCTN-KRCKYRHARS-------------HIMCREGA--NCTR-IDCLFGHPI-----------NEDCRFGVNC   61 (80)
Confidence            457554 4676 8999999731             34677664  5777 568999941           3689888899


Q ss_pred             CCcccCCCCCCc
Q 016862          180 KRRVCFFAHTPD  191 (381)
Q Consensus       180 ~r~~C~FAH~~~  191 (381)
                      .+..|.|.|-..
T Consensus        62 ~n~~C~F~Hp~g   73 (80)
T 2lhn_A           62 KNIYCLFRHPPG   73 (80)
Confidence            999999999543

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=92.15  E-value=0.018  Score=46.35  Aligned_cols=42  Identities=26%  Similarity=0.676  Sum_probs=34.3

Q ss_pred             CCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCCCCCCCcccCCCCC
Q 016862          135 GTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHT  189 (381)
Q Consensus       135 t~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~g~C~r~~C~FAH~  189 (381)
                      -+.|+.+.  .|.+ ..|.|.|-..          ..+|+.+..|.+..|.|+|-
T Consensus         9 ~e~CKf~~--~Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP   50 (80)
T 2lhn_A            9 LEQCKFGT--HCTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP   50 (80)
Confidence            35786666  5888 8999999642          34899999999999999995

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=87.49  E-value=0.11  Score=48.56  Aligned_cols=24  Identities=38%  Similarity=0.686  Sum_probs=22.1

Q ss_pred             CCCCcCCccCCCCCCCCCCCCcCc
Q 016862          135 GTACPDFRKGSCKKGDACEFAHGV  158 (381)
Q Consensus       135 t~lCP~frkG~C~~Gd~C~FAHg~  158 (381)
                      ...|..|.+|.|.+|++|.|.|..
T Consensus        70 ~~~C~ffakG~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           70 LFFCLFFAKGMCCLGPKCEYLHHI   93 (240)
T ss_dssp             CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred             CeEcCccccCCCCCCCCCCccCCC
Confidence            458999999999999999999985

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=85.16  E-value=0.18  Score=37.54  Aligned_cols=27  Identities=26%  Similarity=0.629  Sum_probs=22.7

Q ss_pred             ccCCCCcCCcc-CCCCCCCCCCCCcCcc
Q 016862          133 YSGTACPDFRK-GSCKKGDACEFAHGVF  159 (381)
Q Consensus       133 Yst~lCP~frk-G~C~~Gd~C~FAHg~~  159 (381)
                      +.+.+|..|.. |-|++|..|.+.|.+.
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            45789999986 8999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.001
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.004
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.002
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.003

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 138 CPDF-RKGSCKKGDACEFAHGVFE 160
           C  F   G+CK G+ C+FAHG  E
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFHE 32

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 167 RYRTQPCKD---GGGCKRRV-CFFAHTPDQLR 194
           RY+T+ C+     G CK    C FAH   +LR
Sbjct: 3   RYKTELCRPFEESGTCKYGEKCQFAHGFHELR 34

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 138 CPDFRK-GSCKKGDACEFAHGVFE 160
           C  + + G C+ G  C+FAHG+ E
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLGE 35

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 165 PARYRTQPCKD---GGGCKRRV-CFFAHTPDQLR 194
            +RY+T+ C+     G C+    C FAH   +LR
Sbjct: 4   SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.78
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.77
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.76
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.75
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.6
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.44
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	95.55
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	89.87
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	89.03

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=1.3e-09  Score=75.77  Aligned_cols=32  Identities=34%  Similarity=0.808  Sum_probs=27.7

Q ss_pred             CCccCCCCcCCcc-CCCCCCCCCCCCcCcchhh
Q 016862          131 YHYSGTACPDFRK-GSCKKGDACEFAHGVFECW  162 (381)
Q Consensus       131 ~~Yst~lCP~frk-G~C~~Gd~C~FAHg~~El~  162 (381)
                      -+|+|++|+.|.+ |.|++|++|.||||..||+
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            4688999999874 8999999999999999886

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.8e-10  Score=76.07  Aligned_cols=31  Identities=42%  Similarity=0.954  Sum_probs=19.1

Q ss_pred             CccCCCCcCCc-cCCCCCCCCCCCCcCcchhh
Q 016862          132 HYSGTACPDFR-KGSCKKGDACEFAHGVFECW  162 (381)
Q Consensus       132 ~Yst~lCP~fr-kG~C~~Gd~C~FAHg~~El~  162 (381)
                      +|||++|+.|. +|.|++|++|.||||..||+
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            45666666664 35666666666666666654

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.5e-10  Score=76.62  Aligned_cols=31  Identities=45%  Similarity=0.812  Sum_probs=27.4

Q ss_pred             CCccCcCCCCC---CCCCC-cccCCCCCCcccCCC
Q 016862          166 ARYRTQPCKDG---GGCKR-RVCFFAHTPDQLRIL  196 (381)
Q Consensus       166 ~~YKTk~Ck~~---g~C~r-~~C~FAH~~~ELR~~  196 (381)
                      .+|||++|+.|   |.|++ ..|.|||+.+|||.+
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   36 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSL   36 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccCC
Confidence            05999999998   89996 889999999999974

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=1.7e-09  Score=75.16  Aligned_cols=33  Identities=36%  Similarity=0.732  Sum_probs=29.5

Q ss_pred             CcCCccCcCCCCC---CCCCC-cccCCCCCCcccCCC
Q 016862          164 HPARYRTQPCKDG---GGCKR-RVCFFAHTPDQLRIL  196 (381)
Q Consensus       164 HP~~YKTk~Ck~~---g~C~r-~~C~FAH~~~ELR~~  196 (381)
                      .+..|||++|+.|   |.|++ ..|.|||+++|||.+
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            3678999999988   89995 889999999999975

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.6e-09  Score=72.04  Aligned_cols=29  Identities=34%  Similarity=0.759  Sum_probs=24.2

Q ss_pred             CccCCCCcCCcc-CCCCCCCCCCCCcCcch
Q 016862          132 HYSGTACPDFRK-GSCKKGDACEFAHGVFE  160 (381)
Q Consensus       132 ~Yst~lCP~frk-G~C~~Gd~C~FAHg~~E  160 (381)
                      +|+|++|..|.+ |.|++|++|.||||..|
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            578999999875 88999999999998765

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.9e-08  Score=67.77  Aligned_cols=28  Identities=39%  Similarity=0.905  Sum_probs=25.6

Q ss_pred             CcCCccCcCCCCC---CCCCC-cccCCCCCCcc
Q 016862          164 HPARYRTQPCKDG---GGCKR-RVCFFAHTPDQ  192 (381)
Q Consensus       164 HP~~YKTk~Ck~~---g~C~r-~~C~FAH~~~E  192 (381)
                      || +|||++|+.|   |.|++ ..|.|||+++|
T Consensus         3 hp-kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           3 HP-KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CT-TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CC-CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            67 6999999999   99996 89999999987

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0035  Score=40.24  Aligned_cols=23  Identities=26%  Similarity=0.803  Sum_probs=21.5

Q ss_pred             CCCCcCCccCCCCCCCCCCCCcC
Q 016862          135 GTACPDFRKGSCKKGDACEFAHG  157 (381)
Q Consensus       135 t~lCP~frkG~C~~Gd~C~FAHg  157 (381)
                      -++|+.|.+|-|.+|++|.|-|+
T Consensus         6 kelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           6 RELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhheeeeecCCcCcccccC
Confidence            57999999999999999999997

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.037  Score=40.32  Aligned_cols=21  Identities=33%  Similarity=0.915  Sum_probs=17.8

Q ss_pred             CCcCCccC-CCCCCCCCCCCcC
Q 016862          137 ACPDFRKG-SCKKGDACEFAHG  157 (381)
Q Consensus       137 lCP~frkG-~C~~Gd~C~FAHg  157 (381)
                      +|+.|-+| .|-.||+|.|+|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            57777765 8999999999996

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.12  Score=32.92  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=19.5

Q ss_pred             ccCcCCCCC--CCCCC-cccCCCCCC
Q 016862          168 YRTQPCKDG--GGCKR-RVCFFAHTP  190 (381)
Q Consensus       168 YKTk~Ck~~--g~C~r-~~C~FAH~~  190 (381)
                      -|-.+|+.+  |+|.+ ..|.|-|++
T Consensus         4 kkkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhheeeeecCCcCcccccCC
Confidence            366789999  99996 899999974