Citrus Sinensis ID: 016873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Secondary Structure (PSIPRED)
ccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEEccccEEEcccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHcccccEEHHccccccccccccccccEEEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MDAVKanlggkkvIFCGLIQYLNLFGVAIGYTIAASVSMMAIKrsncfqksggkdpchmssngymITFGIIEVLfsqipdfdqVWWLSIVAAIMSFTYStaglglgigkvagnrsfkgsltgisigtltsagtvtGTQKLWRSLQALGAIAFAYSFSIILLEIqdtirsppaeyktmKKATLFSIIVTTTFYLLCGCmgyaafgdlapnnlltgfgfynpywlidIANAAIVVHLVGAYQVFCQPLFAFVEKwsakkwpksdlvtaeyeipipfwgvYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILgamgfwpltvyFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDlktykpfktry
Flexible Loop (DISEMBL)
mdavkanlggkkVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSvagvvldlktykpfktry
Low Complexity Region (SEG)
MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Disordered region (IsUnstruct)
*******LGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIK*******************GYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKP*****
Disordered Region (DISOPRED)
MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Disordered Region (DISEMBL)
MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Disordered Region (DISPRO)
MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q38967	493	Amino acid permease 2 OS=	yes	no	0.984	0.760	0.709	1e-161
Q39134	476	Amino acid permease 3 OS=	no	no	0.984	0.787	0.698	1e-160
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.984	0.804	0.712	1e-160
Q8GUM3	480	Amino acid permease 5 OS=	no	no	1.0	0.793	0.643	1e-152
Q42400	485	Amino acid permease 1 OS=	no	no	0.986	0.775	0.532	1e-125
P92934	481	Amino acid permease 6 OS=	no	no	0.979	0.775	0.547	1e-121
O80592	475	Amino acid permease 8 OS=	no	no	0.981	0.787	0.522	1e-120
Q9FF99	467	Probable amino acid perme	no	no	0.942	0.768	0.474	1e-89
Q9LRB5	441	Lysine histidine transpor	no	no	0.829	0.716	0.278	1e-26
Q9FKS8	446	Lysine histidine transpor	no	no	0.813	0.695	0.267	1e-24

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  569 bits (1467), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/382 (70%), Positives = 325/382 (85%), Gaps = 7/382 (1%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           MDAV++ LGG K   CGLIQYLNLFG+AIGYTIAAS+SMMAIKRSNCF KSGGKDPCHMS
Sbjct: 118 MDAVRSILGGFKFKICGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHKSGGKDPCHMS 177

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SN YMI FG+ E+L SQ+PDFDQ+WW+SIVAA+MSFTYS  GL LGI +VA N  FKGSL
Sbjct: 178 SNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSL 237

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TGISIGT      VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMKKA
Sbjct: 238 TGISIGT------VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKA 291

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           T  SI VTT FY+LCG MGYAAFGD AP NLLTGFGFYNP+WL+DIANAAIVVHLVGAYQ
Sbjct: 292 TKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQ 351

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLIS 299
           VF QP+FAF+EK  A+++P +D ++ E+EI IP F   Y++N+FR+V+R+ FVV TT+IS
Sbjct: 352 VFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVIS 411

Query: 300 MLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVA 359
           ML+PFFNDVVGILGA+GFWPLTVYFP+EMY  Q+K+ + +TRW+ LQ+L+V+C  I++VA
Sbjct: 412 MLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVA 471

Query: 360 AIGSVAGVVLDLKTYKPFKTRY 381
            +GS+AGV+LDLK YKPFK+ Y
Sbjct: 472 GVGSIAGVMLDLKVYKPFKSTY 493

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  564 bits (1453), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/381 (69%), Positives = 331/381 (86%), Gaps = 6/381 (1%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           MDAV++NLGG KV  CG++QYLN+FGVAIGYTIA+++SMMAIKRSNCF KSGGKDPCHM+
Sbjct: 102 MDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMN 161

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SN YMI FG++++LFSQIPDFDQ+WWLSI+AA+MSFTYS+AGL LGI +V  N   KGSL
Sbjct: 162 SNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSL 221

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TGISIG       VT TQK+WR+ QALG IAFAYS+SIIL+EIQDT++SPP+E KTMKKA
Sbjct: 222 TGISIGA------VTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKA 275

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           TL S+ VTT FY+LCGCMGYAAFGDL+P NLLTGFGFYNPYWL+DIANAAIV+HL+GAYQ
Sbjct: 276 TLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQ 335

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           V+CQPLFAF+EK ++ ++P S+ +  + +IPIP +   +LN+FRL+WRT+FV++TT+ISM
Sbjct: 336 VYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISM 395

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           LLPFFNDVVG+LGA+GFWPLTVYFP+EMY AQKKI R +TRW+ LQ+ ++ C  +++ AA
Sbjct: 396 LLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAA 455

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
            GS+AGV+LDLK+YKPF++ Y
Sbjct: 456 AGSIAGVLLDLKSYKPFRSEY 476

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  563 bits (1451), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/382 (71%), Positives = 320/382 (83%), Gaps = 7/382 (1%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           MDAV++ LGG +   CGLIQYLNLFG+ +GYTIAAS+SMMAIKRSNCF +SGGK+PCHMS
Sbjct: 91  MDAVRSILGGFRFKICGLIQYLNLFGITVGYTIAASISMMAIKRSNCFHESGGKNPCHMS 150

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SN YMI FG+ E+L SQI DFDQ+WWLSIVAAIMSFTYS  GL LGI +VA N   KGSL
Sbjct: 151 SNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGVVKGSL 210

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TGISIG       VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMK A
Sbjct: 211 TGISIGA------VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIA 264

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           T  SI VTTTFY+LCGCMGYAAFGD AP NLLTGFGFYNP+WL+D+ANAAIV+HLVGAYQ
Sbjct: 265 TRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQ 324

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLIS 299
           VF QP+FAF+EK +A ++P SDLVT EYEI IP F   Y++N+FR V+R+ FVVLTT+IS
Sbjct: 325 VFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVIS 384

Query: 300 MLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVA 359
           ML+PFFNDVVGILGA+GFWPLTVYFP+EMY  Q+K+ R + +W+ LQ+L+  C  ITLVA
Sbjct: 385 MLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVA 444

Query: 360 AIGSVAGVVLDLKTYKPFKTRY 381
            +GS+AGV+LDLK YKPFKT Y
Sbjct: 445 GVGSIAGVMLDLKVYKPFKTTY 466

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  538 bits (1385), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 245/381 (64%), Positives = 318/381 (83%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           MDA+ +NLGG KV  CG++QY+NLFG AIGYTIA+++S++AI+R++C Q +G  DPCH++
Sbjct: 100 MDAIHSNLGGIKVKVCGVVQYVNLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPCHVN 159

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
            N YMI FGI++++FSQIPDFDQ+WWLSIVAA+MSF YS  GLGLG+ KV  N+  KGSL
Sbjct: 160 GNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSL 219

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TG+++GT+T +GTVT +QK+WR+ Q+LG IAFAYS+S+IL+EIQDT++SPPAE  TM+KA
Sbjct: 220 TGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKA 279

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           T  S+ VTT FY+LCGC+GYAAFGD AP NLL   GF NPYWL+DIAN AIV+HLVGAYQ
Sbjct: 280 TFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQ 339

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           V+CQPLFAFVEK +++++P+S+ VT E +I +     + LNLFRLVWRT FV+ TTLISM
Sbjct: 340 VYCQPLFAFVEKEASRRFPESEFVTKEIKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISM 399

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           L+PFFNDVVG+LGA+GFWPLTVYFP+EMY AQK + R  T+W+ LQ+L+V+C F+++ AA
Sbjct: 400 LMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAA 459

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
            GSV G+V DLK YKPF++ +
Sbjct: 460 AGSVIGIVSDLKVYKPFQSEF 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 203/381 (53%), Positives = 284/381 (74%), Gaps = 5/381 (1%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           MD V++ LGG+KV  CG+ QY NL GV +GYTI AS+S++A+ +SNCF   G    C +S
Sbjct: 109 MDVVRSYLGGRKVQLCGVAQYGNLIGVTVGYTITASISLVAVGKSNCFHDKGHTADCTIS 168

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           +  YM  FGII+V+ SQIP+F ++ +LSI+AA+MSFTY+T G+GL I  VAG +  K S+
Sbjct: 169 NYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSM 228

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TG ++G       VT  QK+WRS QA+G IAFAY+++ +L+EIQDT+RS PAE K MK+A
Sbjct: 229 TGTAVGV-----DVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRA 283

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           +L  +  TT FY+LCGC+GYAAFG+ AP + LT FGF+ P+WLID ANA I VHL+GAYQ
Sbjct: 284 SLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQ 343

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           VF QP+F FVEK   + +P +  +T+EY + +PF G + ++LFRLVWRT +VV+TT+++M
Sbjct: 344 VFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAM 403

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           + PFFN ++G++GA  FWPLTVYFP+EM+ AQ KI + + RW+ L+ +   C  ++L+AA
Sbjct: 404 IFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAA 463

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
            GS+AG++  +KTYKPF+T +
Sbjct: 464 AGSIAGLISSVKTYKPFRTMH 484

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/380 (54%), Positives = 284/380 (74%), Gaps = 7/380 (1%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           M+ V++ LGG+KV  CGL QY NL G+ IGYTI AS+SM+A+KRSNCF K+G    C  S
Sbjct: 105 MEVVRSYLGGRKVQLCGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATS 164

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGN-RSFKGS 119
           +  +MI F II+++ SQIP+F  + WLSI+AA+MSF Y++ G+GL I K AG     + +
Sbjct: 165 NTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTT 224

Query: 120 LTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRS-PPAEYKTMK 178
           LTG+++G       V+G +K+WR+ QA+G IAFAY++S +L+EIQDT+++ PP+E K MK
Sbjct: 225 LTGVTVGI-----DVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMK 279

Query: 179 KATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGA 238
           +A+L  +  TT FY+LCGC+GYAAFG+ AP N LTGFGFY P+WLID AN  I VHL+GA
Sbjct: 280 RASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGA 339

Query: 239 YQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLI 298
           YQVFCQP+F FVE  SAK+WP +  +T EY+I +P  G + +N  RLVWRT +VV+T ++
Sbjct: 340 YQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVV 399

Query: 299 SMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLV 358
           +M+ PFFND +G++GA  FWPLTVYFPIEM+ AQKKI + +  W  L+IL+ +CF ++LV
Sbjct: 400 AMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLV 459

Query: 359 AAIGSVAGVVLDLKTYKPFK 378
           AA GSV G++  LK +KPF+
Sbjct: 460 AAAGSVQGLIQSLKDFKPFQ 479

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  432 bits (1110), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/379 (52%), Positives = 275/379 (72%), Gaps = 5/379 (1%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           M  V++ LGGKKV  CG+ QY+NL GV IGYTI AS+S++AI +SNC+   G K  C +S
Sbjct: 100 MGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVS 159

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           +  YM  FGI++++ SQ+P+F ++ +LSI+AA+MSF+Y++ G+GL I  VA  +  K  L
Sbjct: 160 NYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGKTEL 219

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TG  IG       VT ++K+W+  QA+G IAF+Y+F+ IL+EIQDT+RS P E K MK+A
Sbjct: 220 TGTVIGV-----DVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRA 274

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           +L  +  TT FY+LCGC+GYAAFG+ AP + LT FGFY PYWLID ANA I +HL+GAYQ
Sbjct: 275 SLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQ 334

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           V+ QP F FVE+   KKWP+S+ +  EY   +P  G  ++NLFRLVWRT +VVLTT ++M
Sbjct: 335 VYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAM 394

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           + PFFN ++G+LGA  FWPLTVYFP+ M+ AQ K+ + + RWL L +L + C  ++ +AA
Sbjct: 395 IFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAA 454

Query: 361 IGSVAGVVLDLKTYKPFKT 379
           +GS+ G++  +K+YKPFK 
Sbjct: 455 VGSIIGLINSVKSYKPFKN 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  330 bits (847), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/371 (47%), Positives = 244/371 (65%), Gaps = 12/371 (3%)

Query: 2   DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSS 61
            AVK  LG K  I CG++ Y++LFG  I YTI  +    AI +SNC+ ++G    C    
Sbjct: 100 QAVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGD 159

Query: 62  NG--YMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGS 119
           N   +M+ FG+ ++  SQIP+F  + WLS+VAAIMSFTYS  G+GL +GK+  NR  +GS
Sbjct: 160 NNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGS 219

Query: 120 LTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKK 179
           + GI              +K+W   QALG IAF+Y FSIILLEIQDT+RSPPAE +TMKK
Sbjct: 220 IRGIP--------AENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKK 271

Query: 180 ATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAY 239
           A+  ++ + T F+  CGC GYAAFGD  P NLLTGFGFY P+WL+D ANA IV+HLVG Y
Sbjct: 272 ASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGY 331

Query: 240 QVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFW--GVYQLNLFRLVWRTLFVVLTTL 297
           QV+ QP+FA  E+   KK+P++  +   Y   +P       +LN  R+  RT++V++TT 
Sbjct: 332 QVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTG 391

Query: 298 ISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITL 357
           ++++ P+FN+V+G++GA+ FWPL VYFP+EM   QKKI   T  WL L+  +  C  + L
Sbjct: 392 VAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCL 451

Query: 358 VAAIGSVAGVV 368
           ++ +GS+ G+V
Sbjct: 452 LSLVGSIYGLV 462

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 164/355 (46%), Gaps = 39/355 (10%)

Query: 26  GVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVW 85
           GV I Y +    S+  + +  C       D   + +  +++ F  +  + S +P+F+ + 
Sbjct: 124 GVDIVYMVTGGASLKKVHQLVC------PDCKEIRTTFWIMIFASVHFVISHLPNFNSIS 177

Query: 86  WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQ 145
            +S+ AA+MS TYST      + K            G+      S    T   K++  L 
Sbjct: 178 IISLAAAVMSLTYSTIAWAASVHK------------GVHPDVDYSPRASTDVGKVFNFLN 225

Query: 146 ALGAIAFAYSFSIILLEIQDTIRSPPA--EYKTMKKATLFSIIVTTTFYLLCGCMGYAAF 203
           ALG +AFAY+   ++LEIQ TI S P       M +  + + IV    Y     +GY  F
Sbjct: 226 ALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIF 285

Query: 204 GDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDL 263
           G+   +N+L       P WLI +AN  +V+H++G+YQ+F  P+F  +E    KK      
Sbjct: 286 GNSVDDNILITLE--KPIWLIAMANMFVVIHVIGSYQIFAMPVFDMLETVLVKK------ 337

Query: 264 VTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVY 323
                   + F   ++L   R + R+L+V  T ++++ +PFF  ++G  G   F P T Y
Sbjct: 338 --------MNFNPSFKL---RFITRSLYVAFTMIVAICVPFFGGLLGFFGGFAFAPTTYY 386

Query: 324 FPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFK 378
            P  M+   KK  R    W       +    +T++A IG +  ++++ KTYK F 
Sbjct: 387 LPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLRTIIINAKTYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 45/355 (12%)

Query: 26  GVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMIT-FGIIEVLFSQIPDFDQV 84
           GV I Y +    S+       C       D C      Y I  F  +  + S +P+F+ +
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVC-------DDCKPIKLTYFIMIFASVHFVLSHLPNFNSI 181

Query: 85  WWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIG--TLTSAGTVTGTQKLWR 142
             +S+ AA+MS +YST            + + KG    +  G    T+AGTV      + 
Sbjct: 182 SGVSLAAAVMSLSYSTIAWA--------SSASKGVQEDVQYGYKAKTTAGTV------FN 227

Query: 143 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKT--MKKATLFSIIVTTTFYLLCGCMGY 200
               LG +AFAY+   ++LEIQ TI S P +     M +  + + IV    Y     +GY
Sbjct: 228 FFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGY 287

Query: 201 AAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK 260
             FG+   +N+L       P WLI  AN  +V+H++G+YQ++  P+F  +E    KK   
Sbjct: 288 YIFGNGVEDNILMSLK--KPAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNF 345

Query: 261 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPL 320
               T                  R   R  +V  T  + M  PFF  ++   G   F P 
Sbjct: 346 RPTTT-----------------LRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPT 388

Query: 321 TVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYK 375
           T + P  ++ A  K  + +  W    +  V   F+ +++ IG +  +V+  K YK
Sbjct: 389 TYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVIQAKGYK 443

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
224103209	469	amino acid permease [Populus trichocarpa	1.0	0.812	0.868	0.0
225428003	512	PREDICTED: amino acid permease 2 [Vitis	1.0	0.744	0.839	0.0
255587378	484	amino acid transporter, putative [Ricinu	1.0	0.787	0.837	0.0
356541032	628	PREDICTED: LOW QUALITY PROTEIN: amino ac	1.0	0.606	0.824	0.0
13676299	513	amino acid transporter [Glycine max]	1.0	0.742	0.821	0.0
356544864	513	PREDICTED: amino acid permease 2-like [G	1.0	0.742	0.818	0.0
388497910	512	unknown [Medicago truncatula]	0.997	0.742	0.789	1e-178
4138679	509	amino acid transporter [Vicia faba]	0.997	0.746	0.792	1e-177
224083500	463	amino acid permease [Populus trichocarpa	0.984	0.809	0.745	1e-169
359492379	483	PREDICTED: amino acid permease 2 [Vitis	0.984	0.776	0.755	1e-164

>gi|224103209|ref|XP_002312967.1| amino acid permease [Populus trichocarpa] gi|222849375|gb|EEE86922.1| amino acid permease [Populus trichocarpa]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/381 (86%), Positives = 360/381 (94%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           MDAVK+ LGG+KV+ CGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCF  SGGKDPCHMS
Sbjct: 89  MDAVKSYLGGRKVMLCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFHSSGGKDPCHMS 148

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SNG+MITFGIIE+LFSQIPDFDQVWWLSIVAAIMSFTYST GLGLGIGKVAGN +FKGSL
Sbjct: 149 SNGFMITFGIIEILFSQIPDFDQVWWLSIVAAIMSFTYSTVGLGLGIGKVAGNGTFKGSL 208

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TGISIGT T AG VT TQKLWRSLQALGAIAFAYSFSIIL+EIQDTIRSPPAEYKTMKKA
Sbjct: 209 TGISIGTETHAGPVTSTQKLWRSLQALGAIAFAYSFSIILIEIQDTIRSPPAEYKTMKKA 268

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           TLFSII+TT FYLLCGCMGYAAFGDLAP NLLTGFGFYNPYWL+DIAN AIVVHLVGAYQ
Sbjct: 269 TLFSIIITTIFYLLCGCMGYAAFGDLAPGNLLTGFGFYNPYWLLDIANVAIVVHLVGAYQ 328

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           V+CQPLFAFVEKWSA+KWPKSD VTAEYE+PIPF+GVYQLN FRLVWRT+FV+LTTLI+M
Sbjct: 329 VYCQPLFAFVEKWSARKWPKSDFVTAEYEVPIPFYGVYQLNFFRLVWRTIFVMLTTLIAM 388

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           L+PFFNDVVG+LG+MGFWPLTV+FPIEMY +QKKIGR T++W+GLQIL+++C  IT+ AA
Sbjct: 389 LMPFFNDVVGLLGSMGFWPLTVFFPIEMYISQKKIGRWTSQWIGLQILSMTCLMITIAAA 448

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
           +GSVAGVVLDLKTYKPFKT Y
Sbjct: 449 VGSVAGVVLDLKTYKPFKTSY 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428003|ref|XP_002278086.1| PREDICTED: amino acid permease 2 [Vitis vinifera] gi|297744622|emb|CBI37884.3| unnamed protein product [Vitis vinifera]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/381 (83%), Positives = 350/381 (91%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           M+AVKANLGGKKV+ CG IQYLNLFG AIGYTIAASVSMMAIKRSNCF KSGGKDPCHMS
Sbjct: 132 MEAVKANLGGKKVLACGWIQYLNLFGTAIGYTIAASVSMMAIKRSNCFHKSGGKDPCHMS 191

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SNGYMITFGIIE++FSQIPDFDQVWWLSIVAAIMSFTYS+ GLGLG+ KVA N SFKGSL
Sbjct: 192 SNGYMITFGIIEIIFSQIPDFDQVWWLSIVAAIMSFTYSSVGLGLGVAKVAENGSFKGSL 251

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TGISIGT+T AG VT TQKLWRSLQALGAIAFAYSFS+IL+EIQDTI+SPPAEYKTM+KA
Sbjct: 252 TGISIGTVTHAGVVTSTQKLWRSLQALGAIAFAYSFSLILIEIQDTIKSPPAEYKTMRKA 311

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           T+ SI VTT FY+LCGC GYAAFGDLAP NLLTGFGFY+PYWL+DIAN AI+VHLVGAYQ
Sbjct: 312 TVLSIAVTTAFYMLCGCFGYAAFGDLAPGNLLTGFGFYDPYWLLDIANIAIIVHLVGAYQ 371

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           V+CQPLFAFVEKWSA KWPKSD VT EY++PIP +GVYQLN FRLVWRT+FVVLTTLI+M
Sbjct: 372 VYCQPLFAFVEKWSAHKWPKSDFVTEEYDLPIPCYGVYQLNFFRLVWRTIFVVLTTLIAM 431

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           LLPFFNDVVGILGA GFWPLTVYFP+EMY +QKKIGR T+RW+ LQIL+ +C  I+L AA
Sbjct: 432 LLPFFNDVVGILGAFGFWPLTVYFPVEMYISQKKIGRWTSRWVALQILSFACLLISLAAA 491

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
           +GSVAGVVLDLKTYKPFKT Y
Sbjct: 492 VGSVAGVVLDLKTYKPFKTSY 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587378|ref|XP_002534252.1| amino acid transporter, putative [Ricinus communis] gi|223525639|gb|EEF28130.1| amino acid transporter, putative [Ricinus communis]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/381 (83%), Positives = 349/381 (91%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           M+AVKANLGG+KV FCGLIQYLNLFGV IGYTIAASVSMMAIKRSNCF  SGGKDPCHMS
Sbjct: 104 MEAVKANLGGRKVFFCGLIQYLNLFGVVIGYTIAASVSMMAIKRSNCFHASGGKDPCHMS 163

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SNGYMITFGI EV+FSQIPDFDQ+WWLSIVAAIMSFTYST GLGLG+GKVAGN + KGSL
Sbjct: 164 SNGYMITFGIAEVIFSQIPDFDQIWWLSIVAAIMSFTYSTVGLGLGVGKVAGNAAAKGSL 223

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TGISIGT+T AG +T TQKLWRSLQALGAIAFAYSFS IL+EIQ+T++SPPAEYKTMKKA
Sbjct: 224 TGISIGTVTHAGLLTSTQKLWRSLQALGAIAFAYSFSAILIEIQETVKSPPAEYKTMKKA 283

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           T FSI VTT FYLLCGC GYAAFGD AP N+LTGFGFYNPYWL+DIAN AI+VHLVGAYQ
Sbjct: 284 TAFSIAVTTFFYLLCGCFGYAAFGDNAPGNILTGFGFYNPYWLLDIANVAIIVHLVGAYQ 343

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           VFCQPLFAF+EKWSA+KWP SD VTAEYEI I F GVYQLN FR+VWRT+FV++TTLI+M
Sbjct: 344 VFCQPLFAFIEKWSARKWPNSDFVTAEYEIRILFSGVYQLNFFRIVWRTIFVIVTTLIAM 403

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           L+PFFNDVVGILGAMGFWPLTVYFPIEMY +QK+IGR T++WL LQIL+V C FIT+ AA
Sbjct: 404 LMPFFNDVVGILGAMGFWPLTVYFPIEMYISQKRIGRRTSQWLALQILSVCCLFITIAAA 463

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
           +GSVAGVVLDLKTYKPFKT Y
Sbjct: 464 VGSVAGVVLDLKTYKPFKTSY 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541032|ref|XP_003538987.1| PREDICTED: LOW QUALITY PROTEIN: amino acid permease 2-like [Glycine max]

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/381 (82%), Positives = 348/381 (91%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           M+AV + LGGKKV  CGLIQY+NLFGVAIGYTIAASVSMMAIKRSNC+  S GKDPCHMS
Sbjct: 248 MEAVNSILGGKKVKLCGLIQYINLFGVAIGYTIAASVSMMAIKRSNCYHSSHGKDPCHMS 307

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SNGYMITFGI EV+FSQIPDFDQVWWLSIVAAIMSFTYS+ GL LG+ KVA N+SFKGSL
Sbjct: 308 SNGYMITFGIAEVIFSQIPDFDQVWWLSIVAAIMSFTYSSVGLSLGVAKVAENKSFKGSL 367

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
            GISIGT+T AGTVT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTM+KA
Sbjct: 368 MGISIGTVTQAGTVTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMRKA 427

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           T  SI VTT FYLLCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQ
Sbjct: 428 TTLSIAVTTVFYLLCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQ 487

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           VF QPLFAFVEKWSA+KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+M
Sbjct: 488 VFSQPLFAFVEKWSARKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAM 547

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           L+PFFNDVVGILGA GFWPLTVYFPI+MY +QKKIGR T+RWLGLQ+L+ SC  I+L+AA
Sbjct: 548 LMPFFNDVVGILGAFGFWPLTVYFPIDMYISQKKIGRWTSRWLGLQLLSASCLIISLLAA 607

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
           +GS+AGVVLDLKTYKPFKT Y
Sbjct: 608 VGSMAGVVLDLKTYKPFKTSY 628

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13676299|gb|AAK33098.1| amino acid transporter [Glycine max]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/381 (82%), Positives = 347/381 (91%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           M+AV + LGGKKV  CGL QY+NLFGVAIGYTIAASVSMMAIKRSNC+  S GKDPCHMS
Sbjct: 133 MEAVNSILGGKKVKLCGLTQYINLFGVAIGYTIAASVSMMAIKRSNCYHSSHGKDPCHMS 192

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SNGYMITFGI EV+FSQIPDFDQVWWLSIVAAIMSFTYS+ GL LG+ KVA N+SFKGSL
Sbjct: 193 SNGYMITFGIAEVIFSQIPDFDQVWWLSIVAAIMSFTYSSVGLSLGVAKVAENKSFKGSL 252

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
            GISIGT+T AGTVT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTM+KA
Sbjct: 253 MGISIGTVTQAGTVTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMRKA 312

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           T  SI VTT FYLLCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQ
Sbjct: 313 TTLSIAVTTVFYLLCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQ 372

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           VF QPLFAFVEKWSA+KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+M
Sbjct: 373 VFSQPLFAFVEKWSARKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAM 432

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           L+PFFNDVVGILGA GFWPLTVYFPI+MY +QKKIGR T+RWLGLQ+L+ SC  I+L+AA
Sbjct: 433 LMPFFNDVVGILGAFGFWPLTVYFPIDMYISQKKIGRWTSRWLGLQLLSASCLIISLLAA 492

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
           +GS+AGVVLDLKTYKPFKT Y
Sbjct: 493 VGSMAGVVLDLKTYKPFKTSY 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544864|ref|XP_003540867.1| PREDICTED: amino acid permease 2-like [Glycine max]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/381 (81%), Positives = 348/381 (91%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           M+AVK+ LGGKKV  CGLIQY+NLFGVAIGYTIAASVSMMAIKRSNC+  S GKDPCHMS
Sbjct: 133 MEAVKSILGGKKVKLCGLIQYINLFGVAIGYTIAASVSMMAIKRSNCYHSSHGKDPCHMS 192

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SNGYMITFGI EV+FSQIPDFDQVWWLSIVAAIMSFTYS+ GL LG+ KVA N++FKGSL
Sbjct: 193 SNGYMITFGIAEVIFSQIPDFDQVWWLSIVAAIMSFTYSSVGLSLGVAKVAENKTFKGSL 252

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
            GISIGT+T AGTVT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+ PPAE+KTM+KA
Sbjct: 253 MGISIGTVTQAGTVTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKFPPAEHKTMRKA 312

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           T  SI VTT FYLLCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQ
Sbjct: 313 TTLSIAVTTVFYLLCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQ 372

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           VF QPLFAFVEKWS +KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+M
Sbjct: 373 VFSQPLFAFVEKWSVRKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAM 432

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           L+PFFNDVVGILGA GFWPLTVYFPI+MY +QKKIGR T+RW+GLQ+L+VSC  I+L+AA
Sbjct: 433 LMPFFNDVVGILGAFGFWPLTVYFPIDMYISQKKIGRWTSRWIGLQLLSVSCLIISLLAA 492

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
           +GS+AGVVLDLKTYKPFKT Y
Sbjct: 493 VGSMAGVVLDLKTYKPFKTSY 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497910|gb|AFK37021.1| unknown [Medicago truncatula]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 300/380 (78%), Positives = 339/380 (89%)

Query: 2   DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSS 61
           DAVK+ LGGKK   CGLIQY+NLFG+AIGYTIAASVSMMAIKRSNC+ +S GKDPCHMSS
Sbjct: 133 DAVKSILGGKKFKMCGLIQYVNLFGIAIGYTIAASVSMMAIKRSNCYHESHGKDPCHMSS 192

Query: 62  NGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLT 121
           NGYMITF I EV+ SQIPDFDQVWWLSIVAAIMSFTYS  GLGLGI KVA N +F+GSL 
Sbjct: 193 NGYMITFAIAEVILSQIPDFDQVWWLSIVAAIMSFTYSAVGLGLGIAKVAENGAFQGSLM 252

Query: 122 GISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT 181
           GISIG +T AGTVTGTQK+WRSLQALGA+AF+YSFSIIL+EIQDT++SPP+E+KTMKKAT
Sbjct: 253 GISIGAVTQAGTVTGTQKIWRSLQALGAMAFSYSFSIILIEIQDTLKSPPSEHKTMKKAT 312

Query: 182 LFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQV 241
           L SI+VT  FYLLCG MGYAAFGD  P NLLTGFGFYNPYWL+DIAN AIVVHL+GAYQV
Sbjct: 313 LVSIMVTAVFYLLCGGMGYAAFGDHVPGNLLTGFGFYNPYWLLDIANLAIVVHLIGAYQV 372

Query: 242 FCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISML 301
           F QP FAFVEKWSA+KWPK++ VTAE+EIPIP  GVYQLN FRL+WRTLFV+LTT+I+ML
Sbjct: 373 FSQPFFAFVEKWSARKWPKNNFVTAEHEIPIPCIGVYQLNFFRLIWRTLFVLLTTIIAML 432

Query: 302 LPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAI 361
           LPFFNDVVGILGA GFWPLTVY+PI+MY +QKKIGR T +WL LQ+L+  C  I+++AA+
Sbjct: 433 LPFFNDVVGILGAFGFWPLTVYYPIDMYISQKKIGRWTKKWLALQVLSGCCLIISILAAV 492

Query: 362 GSVAGVVLDLKTYKPFKTRY 381
           GS+AGVVLDLKTYKPFKT Y
Sbjct: 493 GSIAGVVLDLKTYKPFKTSY 512

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4138679|emb|CAA70778.1| amino acid transporter [Vicia faba]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 301/380 (79%), Positives = 335/380 (88%)

Query: 2   DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSS 61
           DAVK+ LGGKK   CG+IQY+NLFGVAIGYTIAASVSMMAIKRSNC+ +S G DPCHMSS
Sbjct: 130 DAVKSILGGKKFKICGVIQYVNLFGVAIGYTIAASVSMMAIKRSNCYHESHGNDPCHMSS 189

Query: 62  NGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLT 121
           N YMI FGI EV+ SQIPDFDQVWWLSIVAAIMSFTYS  GLGLG+ KVA N +F G L 
Sbjct: 190 NVYMIAFGIAEVILSQIPDFDQVWWLSIVAAIMSFTYSAVGLGLGVAKVAENGTFHGRLM 249

Query: 122 GISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT 181
           GISIGT+T AGTVTGTQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTMKKAT
Sbjct: 250 GISIGTVTPAGTVTGTQKVWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMKKAT 309

Query: 182 LFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQV 241
           + SI+VTT FY+LCG MGYAAFGD  P NLLTGFGFYNPYWL+DIAN AIVVHLVGAYQV
Sbjct: 310 MLSIMVTTVFYILCGSMGYAAFGDHVPGNLLTGFGFYNPYWLLDIANFAIVVHLVGAYQV 369

Query: 242 FCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISML 301
           F QP FAFVEKWSA KWPK+  VT EY+IPIP  GVY+LNLFRL+WRT+FV+LTTLI+ML
Sbjct: 370 FSQPFFAFVEKWSAHKWPKNKFVTEEYDIPIPCIGVYKLNLFRLIWRTIFVLLTTLIAML 429

Query: 302 LPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAI 361
           LPFFNDVVG+LGA GFWPLTVYFPI+MY +QKKIGR T RWLGLQ+L+  C  I+ +AA+
Sbjct: 430 LPFFNDVVGLLGAFGFWPLTVYFPIDMYISQKKIGRWTNRWLGLQMLSGCCLIISTLAAV 489

Query: 362 GSVAGVVLDLKTYKPFKTRY 381
           GS+AGVVLDLKTYKPFKT Y
Sbjct: 490 GSIAGVVLDLKTYKPFKTSY 509

Source: Vicia faba

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083500|ref|XP_002307053.1| amino acid permease [Populus trichocarpa] gi|222856502|gb|EEE94049.1| amino acid permease [Populus trichocarpa]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 284/381 (74%), Positives = 335/381 (87%), Gaps = 6/381 (1%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           MDAV++ LGG KV  CGL+QY+ LFG+AIGYTIA+S+SMMAIKRSNCF +SGG++PCH+S
Sbjct: 89  MDAVQSILGGVKVNLCGLVQYIGLFGIAIGYTIASSISMMAIKRSNCFHQSGGQNPCHIS 148

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SN YMI FGI E+L SQIPDFDQ+WWLSIVAA+MSFTYST GLGLGIGKVA N +FKGSL
Sbjct: 149 SNPYMIIFGITEILLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIGKVAANGTFKGSL 208

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TGISIGT      VT T+K+WRS QALGAIAFAYS+S+IL+EIQDTI+SPPAE KTMKKA
Sbjct: 209 TGISIGT------VTETEKIWRSFQALGAIAFAYSYSVILIEIQDTIKSPPAESKTMKKA 262

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
              SI+VTTTFY+LCGCMGYAAFGD AP NLLTGFGFYNPYWLIDIAN AIV+HL+GAYQ
Sbjct: 263 AKISIVVTTTFYMLCGCMGYAAFGDQAPGNLLTGFGFYNPYWLIDIANVAIVIHLIGAYQ 322

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           VFCQPLFAF+EKW+ +KWP++  +T E++IP+P +  Y+LNLFR+VWRT+FV+LTT+ISM
Sbjct: 323 VFCQPLFAFIEKWANQKWPENYFITKEFKIPVPGFRPYKLNLFRMVWRTIFVLLTTVISM 382

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           LLPFFNDVVGILGA+GFWPLTVYFP+EMY  QKKI + +TRW+ LQ+L+++C  I+LVA 
Sbjct: 383 LLPFFNDVVGILGALGFWPLTVYFPVEMYIVQKKIPKWSTRWICLQMLSMACLVISLVAV 442

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
            GS+AGVVLDLK YKPFKT Y
Sbjct: 443 AGSIAGVVLDLKVYKPFKTSY 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492379|ref|XP_003634405.1| PREDICTED: amino acid permease 2 [Vitis vinifera]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/381 (75%), Positives = 331/381 (86%), Gaps = 6/381 (1%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
           MDAV++NLGG K+  CGLIQYLNLFGVAIGYTIAAS+SMMAIKRSNCF +S  K+PCH+S
Sbjct: 109 MDAVRSNLGGAKMKICGLIQYLNLFGVAIGYTIAASISMMAIKRSNCFHESHDKNPCHIS 168

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
           SN YMI FGI E++ SQIPDFDQ+WWLSIVAAIMSF YST GLGLG+ KVA +  F+GSL
Sbjct: 169 SNPYMIMFGIFEIILSQIPDFDQIWWLSIVAAIMSFAYSTIGLGLGVAKVAESGKFRGSL 228

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           TGISIGT      VT TQK+WRS QALG IAFAYS+SIIL+EIQDTI+SPP+E KTMKKA
Sbjct: 229 TGISIGT------VTQTQKIWRSFQALGNIAFAYSYSIILIEIQDTIKSPPSEKKTMKKA 282

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
           TL S+IVTT FY+LCGCMGYAAFGDLAP NLLTGFGFYNPYWL+DIANAAIV+HLVGAYQ
Sbjct: 283 TLLSVIVTTLFYMLCGCMGYAAFGDLAPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQ 342

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           V+CQPLFAF+EKW+A+K+P S  +T E +IPIP +  Y LNLFRLVWRT+FV++TT+ISM
Sbjct: 343 VYCQPLFAFIEKWAAEKFPDSQFITKEIKIPIPGFKPYNLNLFRLVWRTIFVIITTVISM 402

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
           L+PFFNDVVGILGA GFWPLTVYFP+EMY AQKKI + +TRWL LQIL+ +C  I++ AA
Sbjct: 403 LMPFFNDVVGILGAFGFWPLTVYFPVEMYIAQKKIPKWSTRWLCLQILSFACLIISIAAA 462

Query: 361 IGSVAGVVLDLKTYKPFKTRY 381
            GSVAGV+LDLK YKPFKT Y
Sbjct: 463 AGSVAGVILDLKVYKPFKTSY 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.984	0.787	0.698	1.1e-151
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.984	0.760	0.709	3.4e-148
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.984	0.804	0.712	3.1e-147
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.997	0.791	0.646	4.3e-141
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.979	0.775	0.547	1e-116
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.986	0.775	0.532	3.9e-115
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.979	0.785	0.523	1.6e-111
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.939	0.766	0.481	2.1e-93
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.561	0.485	0.307	3.6e-33
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.472	0.408	0.316	1.4e-29

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
 Identities = 266/381 (69%), Positives = 331/381 (86%)

Query:     1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
             MDAV++NLGG KV  CG++QYLN+FGVAIGYTIA+++SMMAIKRSNCF KSGGKDPCHM+
Sbjct:   102 MDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMN 161

Query:    61 SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
             SN YMI FG++++LFSQIPDFDQ+WWLSI+AA+MSFTYS+AGL LGI +V  N   KGSL
Sbjct:   162 SNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSL 221

Query:   121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
             TGISIG       VT TQK+WR+ QALG IAFAYS+SIIL+EIQDT++SPP+E KTMKKA
Sbjct:   222 TGISIGA------VTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKA 275

Query:   181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
             TL S+ VTT FY+LCGCMGYAAFGDL+P NLLTGFGFYNPYWL+DIANAAIV+HL+GAYQ
Sbjct:   276 TLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQ 335

Query:   241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
             V+CQPLFAF+EK ++ ++P S+ +  + +IPIP +   +LN+FRL+WRT+FV++TT+ISM
Sbjct:   336 VYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISM 395

Query:   301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
             LLPFFNDVVG+LGA+GFWPLTVYFP+EMY AQKKI R +TRW+ LQ+ ++ C  +++ AA
Sbjct:   396 LLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAA 455

Query:   361 IGSVAGVVLDLKTYKPFKTRY 381
              GS+AGV+LDLK+YKPF++ Y
Sbjct:   456 AGSIAGVLLDLKSYKPFRSEY 476

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1447 (514.4 bits), Expect = 3.4e-148, P = 3.4e-148
 Identities = 271/382 (70%), Positives = 325/382 (85%)

Query:     1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
             MDAV++ LGG K   CGLIQYLNLFG+AIGYTIAAS+SMMAIKRSNCF KSGGKDPCHMS
Sbjct:   118 MDAVRSILGGFKFKICGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHKSGGKDPCHMS 177

Query:    61 SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
             SN YMI FG+ E+L SQ+PDFDQ+WW+SIVAA+MSFTYS  GL LGI +VA N  FKGSL
Sbjct:   178 SNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSL 237

Query:   121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
             TGISIGT      VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMKKA
Sbjct:   238 TGISIGT------VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKA 291

Query:   181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
             T  SI VTT FY+LCG MGYAAFGD AP NLLTGFGFYNP+WL+DIANAAIVVHLVGAYQ
Sbjct:   292 TKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQ 351

Query:   241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLIS 299
             VF QP+FAF+EK  A+++P +D ++ E+EI IP F   Y++N+FR+V+R+ FVV TT+IS
Sbjct:   352 VFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVIS 411

Query:   300 MLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVA 359
             ML+PFFNDVVGILGA+GFWPLTVYFP+EMY  Q+K+ + +TRW+ LQ+L+V+C  I++VA
Sbjct:   412 MLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVA 471

Query:   360 AIGSVAGVVLDLKTYKPFKTRY 381
              +GS+AGV+LDLK YKPFK+ Y
Sbjct:   472 GVGSIAGVMLDLKVYKPFKSTY 493

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
 Identities = 272/382 (71%), Positives = 320/382 (83%)

Query:     1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
             MDAV++ LGG +   CGLIQYLNLFG+ +GYTIAAS+SMMAIKRSNCF +SGGK+PCHMS
Sbjct:    91 MDAVRSILGGFRFKICGLIQYLNLFGITVGYTIAASISMMAIKRSNCFHESGGKNPCHMS 150

Query:    61 SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
             SN YMI FG+ E+L SQI DFDQ+WWLSIVAAIMSFTYS  GL LGI +VA N   KGSL
Sbjct:   151 SNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGVVKGSL 210

Query:   121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
             TGISIG       VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMK A
Sbjct:   211 TGISIGA------VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIA 264

Query:   181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
             T  SI VTTTFY+LCGCMGYAAFGD AP NLLTGFGFYNP+WL+D+ANAAIV+HLVGAYQ
Sbjct:   265 TRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQ 324

Query:   241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLIS 299
             VF QP+FAF+EK +A ++P SDLVT EYEI IP F   Y++N+FR V+R+ FVVLTT+IS
Sbjct:   325 VFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVIS 384

Query:   300 MLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVA 359
             ML+PFFNDVVGILGA+GFWPLTVYFP+EMY  Q+K+ R + +W+ LQ+L+  C  ITLVA
Sbjct:   385 MLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVA 444

Query:   360 AIGSVAGVVLDLKTYKPFKTRY 381
              +GS+AGV+LDLK YKPFKT Y
Sbjct:   445 GVGSIAGVMLDLKVYKPFKTTY 466

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
 Identities = 247/382 (64%), Positives = 320/382 (83%)

Query:     1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
             MDA+ +NLGG KV  CG++QY+NLFG AIGYTIA+++S++AI+R++C Q +G  DPCH++
Sbjct:   100 MDAIHSNLGGIKVKVCGVVQYVNLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPCHVN 159

Query:    61 SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
              N YMI FGI++++FSQIPDFDQ+WWLSIVAA+MSF YS  GLGLG+ KV  N+  KGSL
Sbjct:   160 GNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSL 219

Query:   121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
             TG+++GT+T +GTVT +QK+WR+ Q+LG IAFAYS+S+IL+EIQDT++SPPAE  TM+KA
Sbjct:   220 TGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKA 279

Query:   181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
             T  S+ VTT FY+LCGC+GYAAFGD AP NLL   GF NPYWL+DIAN AIV+HLVGAYQ
Sbjct:   280 TFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQ 339

Query:   241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGV-YQLNLFRLVWRTLFVVLTTLIS 299
             V+CQPLFAFVEK +++++P+S+ VT E +I + F G  + LNLFRLVWRT FV+ TTLIS
Sbjct:   340 VYCQPLFAFVEKEASRRFPESEFVTKEIKIQL-FPGKPFNLNLFRLVWRTFFVMTTTLIS 398

Query:   300 MLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVA 359
             ML+PFFNDVVG+LGA+GFWPLTVYFP+EMY AQK + R  T+W+ LQ+L+V+C F+++ A
Sbjct:   399 MLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAA 458

Query:   360 AIGSVAGVVLDLKTYKPFKTRY 381
             A GSV G+V DLK YKPF++ +
Sbjct:   459 AAGSVIGIVSDLKVYKPFQSEF 480

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 208/380 (54%), Positives = 284/380 (74%)

Query:     1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
             M+ V++ LGG+KV  CGL QY NL G+ IGYTI AS+SM+A+KRSNCF K+G    C  S
Sbjct:   105 MEVVRSYLGGRKVQLCGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATS 164

Query:    61 SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGN-RSFKGS 119
             +  +MI F II+++ SQIP+F  + WLSI+AA+MSF Y++ G+GL I K AG     + +
Sbjct:   165 NTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTT 224

Query:   120 LTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRS-PPAEYKTMK 178
             LTG+++G       V+G +K+WR+ QA+G IAFAY++S +L+EIQDT+++ PP+E K MK
Sbjct:   225 LTGVTVGI-----DVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMK 279

Query:   179 KATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGA 238
             +A+L  +  TT FY+LCGC+GYAAFG+ AP N LTGFGFY P+WLID AN  I VHL+GA
Sbjct:   280 RASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGA 339

Query:   239 YQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLI 298
             YQVFCQP+F FVE  SAK+WP +  +T EY+I +P  G + +N  RLVWRT +VV+T ++
Sbjct:   340 YQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVV 399

Query:   299 SMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLV 358
             +M+ PFFND +G++GA  FWPLTVYFPIEM+ AQKKI + +  W  L+IL+ +CF ++LV
Sbjct:   400 AMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLV 459

Query:   359 AAIGSVAGVVLDLKTYKPFK 378
             AA GSV G++  LK +KPF+
Sbjct:   460 AAAGSVQGLIQSLKDFKPFQ 479

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 203/381 (53%), Positives = 284/381 (74%)

Query:     1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
             MD V++ LGG+KV  CG+ QY NL GV +GYTI AS+S++A+ +SNCF   G    C +S
Sbjct:   109 MDVVRSYLGGRKVQLCGVAQYGNLIGVTVGYTITASISLVAVGKSNCFHDKGHTADCTIS 168

Query:    61 SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
             +  YM  FGII+V+ SQIP+F ++ +LSI+AA+MSFTY+T G+GL I  VAG +  K S+
Sbjct:   169 NYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSM 228

Query:   121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
             TG ++G       VT  QK+WRS QA+G IAFAY+++ +L+EIQDT+RS PAE K MK+A
Sbjct:   229 TGTAVGV-----DVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRA 283

Query:   181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
             +L  +  TT FY+LCGC+GYAAFG+ AP + LT FGF+ P+WLID ANA I VHL+GAYQ
Sbjct:   284 SLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQ 343

Query:   241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
             VF QP+F FVEK   + +P +  +T+EY + +PF G + ++LFRLVWRT +VV+TT+++M
Sbjct:   344 VFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAM 403

Query:   301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
             + PFFN ++G++GA  FWPLTVYFP+EM+ AQ KI + + RW+ L+ +   C  ++L+AA
Sbjct:   404 IFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAA 463

Query:   361 IGSVAGVVLDLKTYKPFKTRY 381
              GS+AG++  +KTYKPF+T +
Sbjct:   464 AGSIAGLISSVKTYKPFRTMH 484

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 198/378 (52%), Positives = 275/378 (72%)

Query:     1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
             M  V++ LGGKKV  CG+ QY+NL GV IGYTI AS+S++AI +SNC+   G K  C +S
Sbjct:   100 MGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVS 159

Query:    61 SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
             +  YM  FGI++++ SQ+P+F ++ +LSI+AA+MSF+Y++ G+GL I  VA  +  K  L
Sbjct:   160 NYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGKTEL 219

Query:   121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
             TG  IG       VT ++K+W+  QA+G IAF+Y+F+ IL+EIQDT+RS P E K MK+A
Sbjct:   220 TGTVIGV-----DVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRA 274

Query:   181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
             +L  +  TT FY+LCGC+GYAAFG+ AP + LT FGFY PYWLID ANA I +HL+GAYQ
Sbjct:   275 SLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQ 334

Query:   241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
             V+ QP F FVE+   KKWP+S+ +  EY   +P  G  ++NLFRLVWRT +VVLTT ++M
Sbjct:   335 VYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAM 394

Query:   301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 360
             + PFFN ++G+LGA  FWPLTVYFP+ M+ AQ K+ + + RWL L +L + C  ++ +AA
Sbjct:   395 IFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAA 454

Query:   361 IGSVAGVVLDLKTYKPFK 378
             +GS+ G++  +K+YKPFK
Sbjct:   455 VGSIIGLINSVKSYKPFK 472

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 178/370 (48%), Positives = 247/370 (66%)

Query:     3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSN 62
             AVK  LG K  I CG++ Y++LFG  I YTI  +    AI +SNC+ ++G    C    N
Sbjct:   101 AVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDN 160

Query:    63 G--YMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
                +M+ FG+ ++  SQIP+F  + WLS+VAAIMSFTYS  G+GL +GK+  NR  +GS+
Sbjct:   161 NNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSI 220

Query:   121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
              GI      + G     +K+W   QALG IAF+Y FSIILLEIQDT+RSPPAE +TMKKA
Sbjct:   221 RGIPA---ENRG-----EKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKA 272

Query:   181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
             +  ++ + T F+  CGC GYAAFGD  P NLLTGFGFY P+WL+D ANA IV+HLVG YQ
Sbjct:   273 STVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQ 332

Query:   241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFW-G-VYQLNLFRLVWRTLFVVLTTLI 298
             V+ QP+FA  E+   KK+P++  +   Y   +P   G   +LN  R+  RT++V++TT +
Sbjct:   333 VYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGV 392

Query:   299 SMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLV 358
             +++ P+FN+V+G++GA+ FWPL VYFP+EM   QKKI   T  WL L+  +  C  + L+
Sbjct:   393 AVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLL 452

Query:   359 AAIGSVAGVV 368
             + +GS+ G+V
Sbjct:   453 SLVGSIYGLV 462

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 266 (98.7 bits), Expect = 3.6e-33, Sum P(2) = 3.6e-33
 Identities = 72/234 (30%), Positives = 117/234 (50%)

Query:    26 GVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVW 85
             GV I Y +    S+       C +  G K+   +    +++ F  +  + SQ+P+F+ + 
Sbjct:   122 GVNIVYMVTGGKSLKKFHDVLC-EGHGCKN---IKLTYFIMIFASVHFVLSQLPNFNSIS 177

Query:    86 WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQ 145
              +S+ AA+MS +YST   G  + K        G +  +       A T TG  K++    
Sbjct:   178 GVSLAAAVMSLSYSTIAWGASVDK--------GKVADVDYHL--RATTSTG--KVFGFFS 225

Query:   146 ALGAIAFAYSFSIILLEIQDTIRSPPAE--YKTMKKATLFSIIVTTTFYLLCGCMGYAAF 203
             ALG +AFAY+   ++LEIQ TI S P +   K M K  + + I+    Y     +GY AF
Sbjct:   226 ALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIIVALCYFPVALVGYWAF 285

Query:   204 GDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKK 257
             G+   +N+L       P WLI +AN  +V+H++G+YQ++  P+F  +E    KK
Sbjct:   286 GNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVFDMIETVLVKK 337

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 62/196 (31%), Positives = 98/196 (50%)

Query:    64 YMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGI 123
             +++ F  +  + S +P+F+ +  +S+ AA+MS TYST      + K            G+
Sbjct:   156 WIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHK------------GV 203

Query:   124 SIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPA-EYKT-MKKAT 181
                   S    T   K++  L ALG +AFAY+   ++LEIQ TI S P    K  M +  
Sbjct:   204 HPDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGV 263

Query:   182 LFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQV 241
             + + IV    Y     +GY  FG+   +N+L       P WLI +AN  +V+H++G+YQ+
Sbjct:   264 IVAYIVVAICYFPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQI 321

Query:   242 FCQPLFAFVEKWSAKK 257
             F  P+F  +E    KK
Sbjct:   322 FAMPVFDMLETVLVKK 337

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FN04	AAP4_ARATH	No assigned EC number	0.7120	0.9842	0.8047	no	no
Q38967	AAP2_ARATH	No assigned EC number	0.7094	0.9842	0.7606	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	2e-80

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  251 bits (643), Expect = 2e-80
 Identities = 114/370 (30%), Positives = 169/370 (45%), Gaps = 37/370 (10%)

Query: 1   MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS 60
            D      G K  +       +NLFGV I Y I A  ++ AI  S           CH+S
Sbjct: 73  GDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDT-------CHIS 125

Query: 61  SNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSL 120
              ++I FG+I +  S IP+   +  LS+VAA+ S              +  + +  G L
Sbjct: 126 LVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVI---------LVLSVAELGVL 176

Query: 121 TGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 180
           T   +G+L          KL R   A+G I FA+    +LL IQ+T++SP    K M K 
Sbjct: 177 TAQGVGSLG----AKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKF-KAMTKV 231

Query: 181 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240
            L +II+ T  Y+L G +GY AFG+    N+L         WLIDIAN  +V+HL+ +Y 
Sbjct: 232 LLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLP--KSDWLIDIANLLLVLHLLLSYP 289

Query: 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM 300
           +   P+   VE    +K        A  +            L R+V R+  VV+T LI++
Sbjct: 290 LQAFPIRQIVENLLFRKG-------ASGKHNPKSK------LLRVVIRSGLVVITYLIAI 336

Query: 301 LLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQ-ILNVSCFFITLVA 359
            +PF  D + ++GA    PLT   P   +   KK  + +   L    IL+V C  I L+ 
Sbjct: 337 SVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLL 396

Query: 360 AIGSVAGVVL 369
               VAG+++
Sbjct: 397 MAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.88
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.63
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.44
PRK10483	414	tryptophan permease; Provisional	99.31
PRK15132	403	tyrosine transporter TyrP; Provisional	99.31
PRK09664	415	tryptophan permease TnaB; Provisional	99.23
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.06
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.92
PRK11021	410	putative transporter; Provisional	98.46
PRK10746	461	putative transport protein YifK; Provisional	98.43
PRK10655	438	potE putrescine transporter; Provisional	98.43
PRK10644	445	arginine:agmatin antiporter; Provisional	98.42
TIGR00909	429	2A0306 amino acid transporter.	98.4
PRK10238	456	aromatic amino acid transporter; Provisional	98.36
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.36
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.34
PRK10249	458	phenylalanine transporter; Provisional	98.33
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.32
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.31
TIGR00913	478	2A0310 amino acid permease (yeast).	98.3
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.29
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.28
PRK10580	457	proY putative proline-specific permease; Provision	98.28
PRK15049	499	L-asparagine permease; Provisional	98.27
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.27
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.24
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.17
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.15
PRK11387	471	S-methylmethionine transporter; Provisional	98.15
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.12
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.11
TIGR00930	953	2a30 K-Cl cotransporter.	98.05
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.01
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.95
TIGR00911	501	2A0308 L-type amino acid transporter.	97.95
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.88
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.86
PRK10836	489	lysine transporter; Provisional	97.84
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	97.66
PRK15238	496	inner membrane transporter YjeM; Provisional	97.63
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.53
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	96.9
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	96.88
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	96.58
COG1457	442	CodB Purine-cytosine permease and related proteins	96.57
PF03845	320	Spore_permease: Spore germination protein; InterPr	96.45
PRK11375	484	allantoin permease; Provisional	96.3
KOG1286	554	consensus Amino acid transporters [Amino acid tran	95.75
KOG1289	550	consensus Amino acid transporters [Amino acid tran	95.03
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	94.64
PRK11017	404	codB cytosine permease; Provisional	93.61
COG3949	349	Uncharacterized membrane protein [Function unknown	93.39
PRK09442	483	panF sodium/panthothenate symporter; Provisional	93.12
COG0833	541	LysP Amino acid transporters [Amino acid transport	92.84
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	92.68
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	91.99
TIGR00813	407	sss transporter, SSS family. have different number	90.04
PRK12488	549	acetate permease; Provisional	87.18
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	86.1

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=4.2e-51  Score=401.05  Aligned_cols=329  Identities=37%  Similarity=0.644  Sum_probs=287.6

Q ss_pred             ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      .|+|+++||+++|+++.+.+.+.++|+|++|+++.||+++.+.+..|.+.      ..++.+.|+++++++++|++|+||
T Consensus       108 ~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~------~~l~~~~f~iif~~i~~~~s~lp~  181 (437)
T KOG1303|consen  108 PDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLND------NSLDKQYFIIIFGLIVLPLSQLPN  181 (437)
T ss_pred             HHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------ccccceehhhhHHHHHHHHHHCCC
Confidence            49999999999999999999999999999999999999999998765321      034457899999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      +++++|+|..|+++++.|.++.++.++.++.+...+++..++.  +          ...  ..++++|++.|+|+||+++
T Consensus       182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~--~----------~~~--~~f~a~g~iaFaf~gH~v~  247 (437)
T KOG1303|consen  182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL--G----------TIP--TVFTALGIIAFAYGGHAVL  247 (437)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC--C----------CCc--chhhhhhheeeeecCCeee
Confidence            9999999999999999999999988888776542222222211  0          111  1189999999999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhh
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ  240 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~  240 (381)
                      ||||++||+|    ++|+|++.+++.+++.+|+++++.||++|||+++||++.|++  +|.|+.+.+++++.+|++.+|+
T Consensus       248 peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~  321 (437)
T KOG1303|consen  248 PEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQ  321 (437)
T ss_pred             eehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhh
Confidence            9999999999    359999999999999999999999999999999999999963  5789999999999999999999


Q ss_pred             eeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhH
Q 016873          241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPL  320 (381)
Q Consensus       241 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l  320 (381)
                      ++.+|.++.+|++...+.++  +            .+ +..+.|++.|+.+++.++++|+.+|+|+++++|+||+...++
T Consensus       322 i~a~pl~~~~E~~~~~~~~~--~------------~~-~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~  386 (437)
T KOG1303|consen  322 IYAQPLFDVVEKLIGVKHPD--F------------KK-RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPL  386 (437)
T ss_pred             hhhcchHHHHHHHhccCCcc--c------------cc-cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHH
Confidence            99999999999998765332  1            00 123789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 016873          321 TVYFPIEMYKAQKKIGRGTTRWLGLQIL-NVSCFFITLVAAIGSVAGVVLD  370 (381)
Q Consensus       321 ~fi~P~l~~lkl~~~~~~~~~~~~~~~l-~~~g~~~~v~gt~~si~~li~~  370 (381)
                      ++++|+++|++++|+++.+.+|+.++.+ .++|+++++..+.+++++++.+
T Consensus       387 t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  387 TFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999998888 7999999999999999998754

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-48  Score=377.56  Aligned_cols=313  Identities=15%  Similarity=0.196  Sum_probs=267.1

Q ss_pred             hhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCchh
Q 016873            5 KANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQV   84 (381)
Q Consensus         5 ~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l   84 (381)
                      .+.+||++|.++++.+.++|+|.|++|+|+++|+++++.+.   +.+.     .++.+.|+++..+++++++++||+|.|
T Consensus       131 ~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~~~-----~~s~~~~i~~~~~~~lll~~Ir~Lk~L  202 (449)
T KOG1304|consen  131 LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HSPG-----VLSVRLYILIQLPPLLLLNLIRNLKIL  202 (449)
T ss_pred             HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cCCC-----CccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            56799999999999999999999999999999999999872   1111     467788998888899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhHHHH
Q 016873           85 WWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQ  164 (381)
Q Consensus        85 ~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~~i~  164 (381)
                      +.+|++|+++.++-.+++    .++..++.+   +.++           .+...+..+...++|+.+|||+|++++.|+|
T Consensus       203 sp~Sl~Anv~~~~g~~ii----~~y~~~~~~---~~~~-----------~~~~~~~~~~~lf~GtaifafEGig~VLPlE  264 (449)
T KOG1304|consen  203 SPFSLFANVFILVGLAII----MYYLVQDLP---PTSD-----------LPAVTGWSGLPLFFGTAIFAFEGIGMVLPLE  264 (449)
T ss_pred             hHHHHHHHHHHHHHHHHH----HHHHHhccC---Cccc-----------cccccchhhhHHHHHHHHHHhccceEEEehh
Confidence            999999998766533332    233333321   1111           2234445678889999999999999999999


Q ss_pred             hhhcCCccccccch---hhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhhe
Q 016873          165 DTIRSPPAEYKTMK---KATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQV  241 (381)
Q Consensus       165 ~~M~~P~~~~~~~~---~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~l  241 (381)
                      |+||+|    ++|+   ++++.++.+++++|+.+|++||++|||++++.|++|.|  + +|+.+.+++++++.+..+||+
T Consensus       265 n~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pL  337 (449)
T KOG1304|consen  265 NSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPL  337 (449)
T ss_pred             hcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCch
Confidence            999999    5788   99999999999999999999999999999999999964  4 899999999999999999999


Q ss_pred             eccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHH
Q 016873          242 FCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLT  321 (381)
Q Consensus       242 ~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l~  321 (381)
                      +.+|..+++|+.+.++..++                 +.++....+|+.+++++..+|.++|+++++++|+||++++.+.
T Consensus       338 Q~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~  400 (449)
T KOG1304|consen  338 QFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLA  400 (449)
T ss_pred             hhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHH
Confidence            99999999999886653221                 1136788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016873          322 VYFPIEMYKAQKKIGR---GTTRWLGLQILNVSCFFITLVAAIGSVAGV  367 (381)
Q Consensus       322 fi~P~l~~lkl~~~~~---~~~~~~~~~~l~~~g~~~~v~gt~~si~~l  367 (381)
                      +++|++++++.++++.   +.++++.|.+++++|++..+.|||.|++++
T Consensus       401 li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  401 LIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999999999975443   456777899999999999999999999864

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=7.1e-48  Score=386.93  Aligned_cols=339  Identities=14%  Similarity=0.142  Sum_probs=256.8

Q ss_pred             ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      .|+++++|||++++++++.++++++|+|++|+++.||+++.+++....+ +..+.. ..++..+.+++.++++|++++|+
T Consensus       124 ~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~-~~~~~~-~~~r~~~~~i~~~i~lPLs~~r~  201 (467)
T PTZ00206        124 EGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP-DFLKQK-SGNRLLTSLMWLCFMLPLVIPRH  201 (467)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chhhhc-cCcEEeeeehhhhHhhhcccccc
Confidence            4899999999999999999999999999999999999999887531100 000000 01122344557788999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      +++|+|+|.+|+++.+...+++++....++..+     ..++.+.++. ...+........+.+.++|+++|||.||.++
T Consensus       202 i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~-----~~~~~~~~~~-~~~~~~~f~~~~~~~~algi~~faF~~h~~~  275 (467)
T PTZ00206        202 IDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPE-----NIKNVSVGKD-DNAEIILFNSGNRAIEGLGVFIFAYVFQITA  275 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc-----cccccccCCC-CCCceEEecCchHHHhhhhHHHhhhhhhhhh
Confidence            999999999998665543333333333322211     1111111110 0000011112235789999999999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhh
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ  240 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~  240 (381)
                      ||+++|||||  +.++|.+++..++.++.++|..+|++||++||+++++||+.|+++ .++....++++++.+.++.+||
T Consensus       276 ~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~syp  352 (467)
T PTZ00206        276 YEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYA  352 (467)
T ss_pred             HHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhh
Confidence            9999999998  678999999999999999999999999999999999999999742 2345567778888899999999


Q ss_pred             eeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhH
Q 016873          241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPL  320 (381)
Q Consensus       241 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l  320 (381)
                      +..+|+++.+++.+.++  +++         .+       .++|...+..++++++++|+++|+++.+++|+||++++.+
T Consensus       353 L~~~p~r~~i~~~~~~~--~~~---------~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l  414 (467)
T PTZ00206        353 LLGMACRNALYDVIGWD--ARK---------VA-------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLL  414 (467)
T ss_pred             hhhhhHHHHHHHHhCCC--ccc---------Cc-------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHH
Confidence            99999999999886432  111         01       2556666777777889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc---cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016873          321 TVYFPIEMYKAQK---KIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV  368 (381)
Q Consensus       321 ~fi~P~l~~lkl~---~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~li  368 (381)
                      +|++|++||+|..   +++....+|+.+++++++|++..++|||+|+.+.+
T Consensus       415 ~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        415 GFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9999999999953   22223345667899999999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=5.2e-44  Score=357.95  Aligned_cols=324  Identities=17%  Similarity=0.165  Sum_probs=259.5

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      |+++..+||+++.+..+...++++|.|+.|++..++++..+-           +  .++.+.|+++++++++|++++|++
T Consensus       124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-----------~--~~~~~~~~~i~~~v~~~~~~i~sl  190 (473)
T PLN03074        124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-----------D--NLDKRTWTYIFGACCATTVFIPSF  190 (473)
T ss_pred             HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-----------C--CcCCCeEEeehHHHHHHHHHccCH
Confidence            567778999999999999999999999999998888766541           1  345678899999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873           82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL  161 (381)
Q Consensus        82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~  161 (381)
                      ++++++|.+|..+++.+...+++....++.+        ++.+.         ..+.+....+.+.++++|||+||+++|
T Consensus       191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~~---------~~~~~~~~~f~~~~~i~faf~g~~v~~  253 (473)
T PLN03074        191 HNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVKH---------SGPTKLVLYFTGATNILYTFGGHAVTV  253 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCCC---------CCchhHHHHHHHHHHHHHHhcccccHH
Confidence            9999999999876655433333333322211        11110         113345567888999999999999999


Q ss_pred             HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCc--ccccccCCCCchhHHHHHHHHHHHHHHHhh
Q 016873          162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN--NLLTGFGFYNPYWLIDIANAAIVVHLVGAY  239 (381)
Q Consensus       162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~--~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~  239 (381)
                      |||+|||||    ++|+++...+...+..+|..+|+.||++|||++++  +.+.|.|  ++. ...+++++++++++.+|
T Consensus       254 ~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy  326 (473)
T PLN03074        254 EIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITF  326 (473)
T ss_pred             HHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHH
Confidence            999999999    57999999999999999999999999999999864  5566643  233 35788999999999999


Q ss_pred             heeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhh
Q 016873          240 QVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWP  319 (381)
Q Consensus       240 ~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~  319 (381)
                      ++++.|+.+.+|+....+  +.                 +....|.++|+.+++.++++|+.+|+|+++++|+||++++.
T Consensus       327 ~l~~~p~~~~~e~~~~~~--~~-----------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~  387 (473)
T PLN03074        327 GFACTPLYFVWEKAIGVH--DT-----------------KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSF  387 (473)
T ss_pred             HHHHhhHHHHHHHHhccc--cc-----------------ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            999999999999876432  10                 11367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCC-------------Ccchh--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccccCCcCC
Q 016873          320 LTVYFPIEMYKAQKKIG-------------RGTTR--WLGLQILNVSC-FFITLVAAIGSVAGVVLDLKTYKPFKTRY  381 (381)
Q Consensus       320 l~fi~P~l~~lkl~~~~-------------~~~~~--~~~~~~l~~~g-~~~~v~gt~~si~~li~~~~~~~~f~~~~  381 (381)
                      ++|++|+++|+++++++             .+.++  .+.|+.+++++ ++..+.|||+|++++++++++|+.|++-|
T Consensus       388 l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~  465 (473)
T PLN03074        388 TVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCY  465 (473)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhc
Confidence            99999999999875332             11222  36788888764 44468999999999999999999998864

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=6.5e-43  Score=346.28  Aligned_cols=333  Identities=24%  Similarity=0.328  Sum_probs=261.4

Q ss_pred             ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      .|++++++||++++++++++.++++|.|++|+++.+|.++++.+....       ....++..+.++.+++++|++++|+
T Consensus        71 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~-------~~~~~~~~~~~i~~~i~~pls~~~~  143 (409)
T PF01490_consen   71 GDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFG-------DLFISRYVWIIIFALIVLPLSFLKN  143 (409)
T ss_pred             cccccccccccccccccchheeccccccceeEEEeeeeeecccccccc-------cccccccccccccccccccccccch
Confidence            489999999999999999999999999999999999999998764210       1234567788888899999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      ++++++.|.+|.++.+.+.++.+... ......+     .++....      +.....+.++++.++|+++|||.||.++
T Consensus       144 l~~l~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~i~~faf~~~~~~  211 (409)
T PF01490_consen  144 LKSLRYLSILGLFSIFYFIVIVVIYI-ISYGPGE-----PSGVPSP------PVWPFISFSGFFSAFGIIIFAFSCHPNL  211 (409)
T ss_pred             hhHHHHHhhhhhhccceeeeeeccee-eeeeccc-----ccccccc------cccccchhhHHHHhhhhhhhhhhccccc
Confidence            99999999999876543212222111 1111111     1111100      0113455678999999999999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhh
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ  240 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~  240 (381)
                      ||+++|||+|+ +.++++|+...++.+++++|+.+|..||++||+++++|++.|++  ++++...++++++.++++.+||
T Consensus       212 ~~i~~~m~~~~-~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~p  288 (409)
T PF01490_consen  212 PPIQSEMKDPS-KFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYP  288 (409)
T ss_pred             ceeeeeccCCc-cccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Ccccccccccccchhhhhhccc
Confidence            99999999993 22567799999999999999999999999999999999999975  3446778889999999999999


Q ss_pred             eeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhH
Q 016873          241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPL  320 (381)
Q Consensus       241 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l  320 (381)
                      +..+|.++.+|+.+.++.+.++..+.+         +.+.+++|..+|+.++..+.++|+.+|+++++++++||++++.+
T Consensus       289 l~~~p~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i  359 (409)
T PF01490_consen  289 LQLFPARNSLENLLFKRAASSRDSPKN---------TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFI  359 (409)
T ss_pred             cccchhHhhhhhheecccccccccccc---------ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhH
Confidence            999999999999886420000000000         01124678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCcchhH-----HHHHHHHHHHHHHHHHHHHHHH
Q 016873          321 TVYFPIEMYKAQKKIGRGTTRW-----LGLQILNVSCFFITLVAAIGSV  364 (381)
Q Consensus       321 ~fi~P~l~~lkl~~~~~~~~~~-----~~~~~l~~~g~~~~v~gt~~si  364 (381)
                      +|++|+++|+|.+|.++.+.++     ..++..+++|++.++.||+.++
T Consensus       360 ~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  360 SFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             HHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            9999999999997665433322     3356778899999999999876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-34  Score=280.62  Aligned_cols=333  Identities=17%  Similarity=0.232  Sum_probs=253.8

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCch-hhHHHHHHHHHhhcCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNG-YMITFGIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~ii~~~v~~pl~~l~~   80 (381)
                      ++++..+|+.++...++.......| |++|++.+||.+..+....-..++..+.  ..+++. |++...++..|++..|+
T Consensus        71 ~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~  147 (411)
T KOG1305|consen   71 SLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKN  147 (411)
T ss_pred             HHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHh
Confidence            5789999999977777777777777 7999999999999766542111110000  122333 56667788999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      ++++++.|.++.+..+.++.++++.....    +.   ..++.++.       .++...+++.+.++|+++|||.||.+.
T Consensus       148 l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~----~~---~~~~~~~~-------~~~~~~~~~~~~~~pi~~faf~Ch~n~  213 (411)
T KOG1305|consen  148 LDSLKYTSALSLASVVYFVVLVVYKYFQG----PC---ALGRLSYL-------VPNLSSFSSLFYALPIFVFAFTCHSNV  213 (411)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhc----cc---ccCCcccc-------cCCcchhhhhhhhhhhhheeeeccccc
Confidence            99999999999877665544443332221    10   01111110       122333368899999999999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCch----hHHHHHHHHHHHHHH
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPY----WLIDIANAAIVVHLV  236 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~----~~~~~~~~~~~i~~~  236 (381)
                      .++++|||||  +.++|.++...+...+..+|..+|.+||+.|||++++|++.+++-..+.    +....++..+.++.+
T Consensus       214 ~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~  291 (411)
T KOG1305|consen  214 FPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVL  291 (411)
T ss_pred             eeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHH
Confidence            9999999999  6899999999999999999999999999999999999999997632221    234678999999999


Q ss_pred             HhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhh
Q 016873          237 GAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMG  316 (381)
Q Consensus       237 ~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~  316 (381)
                      ..+|+..+|++..+++...+++|+++    .     +      .+.++.+....++..+...|+.+|+++++.+++||++
T Consensus       292 l~~pi~~fPlr~~l~~~~~~~~~~~~----~-----~------s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~  356 (411)
T KOG1305|consen  292 LTFPIVLFPLRMNLDELLFPYQPGLT----S-----F------SGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATS  356 (411)
T ss_pred             HHHHHHhchHHHHHHHHhcccCCCCC----C-----c------cceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhh
Confidence            99999999999999988776544321    1     1      0245677777888888999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016873          317 FWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLD  370 (381)
Q Consensus       317 ~~~l~fi~P~l~~lkl~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~li~~  370 (381)
                      ++.++||+|+++|+|.+|.  +++.....+...++|+...+.|+..-+.++..+
T Consensus       357 ~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  357 STSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             hhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999766  333344566777888888888888888777654

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=271.11  Aligned_cols=329  Identities=16%  Similarity=0.185  Sum_probs=262.4

Q ss_pred             hhhhhhcCCC-cceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            2 DAVKANLGGK-KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G~~-~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      ++|+.+++|. |.+.+.+.+++.+..+|+.|+|..||.+..-++.      .     ..+++-|+++.+..++|.+++++
T Consensus       189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~------~-----svd~~sWm~i~~a~LLpc~FLk~  257 (524)
T KOG4303|consen  189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG------L-----SVDKASWMMITSASLLPCSFLKD  257 (524)
T ss_pred             HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC------C-----CccccchhhhhhHHHhhhHHHHH
Confidence            5788889987 6688899999999999999999999988865432      1     34577899999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      +|-++-+|+.++..-++.-.+++..+... ++    |.....+.+           ..+..++...+|+++|+|+.|...
T Consensus       258 Lk~VS~lSf~ct~sH~viN~i~v~YCLs~-~~----dW~wskv~F-----------sidi~~fPisvG~iVFsYTSqIFL  321 (524)
T KOG4303|consen  258 LKIVSRLSFFCTISHLVINLIMVLYCLSF-VS----DWSWSKVTF-----------SIDINTFPISVGMIVFSYTSQIFL  321 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh----hccceeEEE-----------EEEcccCceEEEEEEEeeeceeec
Confidence            99999999999888887776666655432 22    233333332           233345667899999999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhh
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ  240 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~  240 (381)
                      |+++.+|++|    .+|.-.+.++-+...++-..+|..||++||+.++..|.+|.|   +.-...++|+...+..+.|||
T Consensus       322 P~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYP  394 (524)
T KOG4303|consen  322 PNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYP  394 (524)
T ss_pred             cccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCC
Confidence            9999999999    356666778888888888999999999999999999999953   334567889999999999999


Q ss_pred             eeccchHHHHHHHHhccCCCCccCcccccccCCC-c-cccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhh
Q 016873          241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPF-W-GVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFW  318 (381)
Q Consensus       241 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~-~-~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~  318 (381)
                      +-.+...+.+|+-+..--|+..|         |. | +..+.+...+-+|..+++.++++|+.+|+|..++||+|+++++
T Consensus       395 LPfyAAvelLe~nlF~g~p~t~F---------pscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGt  465 (524)
T KOG4303|consen  395 LPFYAAVELLENNLFLGYPQTPF---------PSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGT  465 (524)
T ss_pred             chHHHHHHHHHHhhhcCCCCCCC---------ceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccc
Confidence            87766677777755433243322         21 1 1112234456789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016873          319 PLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT  373 (381)
Q Consensus       319 ~l~fi~P~l~~lkl~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~li~~~~~  373 (381)
                      .++||.|++||+++++......+..++..+++.|...++.|.|-|-.++++.++.
T Consensus       466 mLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~  520 (524)
T KOG4303|consen  466 MLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS  520 (524)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence            9999999999999975544444555788899999999999999999999999875

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.88  E-value=4.9e-21  Score=189.56  Aligned_cols=323  Identities=15%  Similarity=0.164  Sum_probs=217.3

Q ss_pred             ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      .|++++.+||+++++.++...+.++|.+.+|.+..||.+++..+.. ++.    +  ..+++...+++..++.++++.++
T Consensus        75 ~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~-~~~----~--~~~r~~~~lif~~~~~~l~~~~~  147 (415)
T COG0814          75 TSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQ-FGL----N--PLPRKLGSLIFALVLAFLSWLGT  147 (415)
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhh-ccc----C--CcchHHHHHHHHHHHHHHHHhch
Confidence            3789999999999999999999999999999999999999998742 111    1  14566677778888888999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      ...++..|.+.....+..++...    +. ....  +.  .+..--|      ...+....+...++|++.|||+||+++
T Consensus       148 ~~~lk~ts~l~~~~v~~~~~l~~----~~-~~~~--~~--~~l~~~~------~~~~~~~~~~~~~ipv~vfsF~~h~~i  212 (415)
T COG0814         148 LAVLKITSLLVFGKVIYLVLLVV----YL-IPHW--NP--ANLFALP------SASQSFWKYLLLAIPVFVFSFGFHGNI  212 (415)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----HH-hccc--CH--HHHhccc------ccchhhHHHHHHHhhHHHhhhhCCccc
Confidence            99999999887665443222211    11 1110  00  0000000      000244456788999999999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHH-------------HHH
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLI-------------DIA  227 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~-------------~~~  227 (381)
                      |++++|||+++  +++.+|+...+..+..++|..+++++|..+|+.+.++++.+.+  +++.+.             ...
T Consensus       213 ~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~--~~~~~l~~~~~~~~~~~~~~~~  288 (415)
T COG0814         213 PSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE--QNISLLSALAGVINSPILSIAL  288 (415)
T ss_pred             hHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC--chHHHHHHHHHhhcchHHHHHH
Confidence            99999999983  4459999999999999999999999999999999999999864  222211             112


Q ss_pred             HHHHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchh-HHHHHHHHHHHHHHHHHHccchH
Q 016873          228 NAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLF-RLVWRTLFVVLTTLISMLLPFFN  306 (381)
Q Consensus       228 ~~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-r~~~r~~~v~~~~~iA~~iP~f~  306 (381)
                      ++.-.+.+..||-=.....+|..|+.+++.  +++. ++           .....+ ............+..+...|..+
T Consensus       289 ~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~--~~~~-~r-----------~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  354 (415)
T COG0814         289 NIFALFAIATSFLGVYLGLFEGLADLFKKS--NSKP-GR-----------KKTGLLTFLPPLIFALLYPWGFAIALGYAG  354 (415)
T ss_pred             HHHHHHHHHHHHhCchhhHHHhhhHHHHhc--cCcc-cc-----------hhhhhhhHHHHHHHHHHHHHHHHHHhHhHH
Confidence            222233333333222223344455544321  1000 00           011112 22333334556677899999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 016873          307 DVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGS  363 (381)
Q Consensus       307 ~vl~LvGa~~~~~l~fi~P~l~~lkl~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~s  363 (381)
                      .+++-+|+..+..+.++.|...+.|....+.+..++..+..++++|+..++.-.++.
T Consensus       355 ~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         355 GLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987774333322212356667778877666554443

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.63  E-value=1.2e-14  Score=143.08  Aligned_cols=285  Identities=14%  Similarity=0.061  Sum_probs=187.8

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      |.++++|||++++++.+...+.++..+.+|.+..++.++.+++.. ..     .  ..+++...+++.+++.++.+ +..
T Consensus        63 ~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~-~~-----~--~~~~~~~~~~~~~v~~~l~~-~G~  133 (381)
T TIGR00837        63 TIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEY-FG-----F--PWSARAIVLIFTVLFGSFVW-LST  133 (381)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHh-cC-----C--CccHHHHHHHHHHHHHHHHH-hch
Confidence            678999999999999999999999999999999999999887631 11     0  12223333344444455444 445


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873           82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL  161 (381)
Q Consensus        82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~  161 (381)
                      +..+.++.+.....+....+.++....+.        +.++.  .|.     ...+....+...+++..+++|++|.+++
T Consensus       134 ~~~~~v~~i~~~~~l~~l~~~ii~~~~~~--------~~~~~--~~~-----~~~~~~~~~~~~a~~~~~~~fg~~~~i~  198 (381)
T TIGR00837       134 SAVDRITRVLIFGKIIAFALVFSGLLPHV--------KGDLL--LDV-----ALDTSYWPYILSALPVCLTSFGFHGNVP  198 (381)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cHHHH--hcC-----ccccccHHHHHHHHHHHHHHHHcccccH
Confidence            77777776554443332222222222211        00110  000     0001233467789999999999999999


Q ss_pred             HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCc-------cc---ccccC-CCCchhHHHHHHHH
Q 016873          162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN-------NL---LTGFG-FYNPYWLIDIANAA  230 (381)
Q Consensus       162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~-------~I---l~n~~-~~~~~~~~~~~~~~  230 (381)
                      ++.+++++|   +|+.+|+...+..+++++|+.+........+.+.-.       ++   ..... .....+...+..++
T Consensus       199 ~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~  275 (381)
T TIGR00837       199 SLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELF  275 (381)
T ss_pred             HHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHH
Confidence            999999876   378999999999999999998866555554432211       10   00000 01223444566777


Q ss_pred             HHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchH-HHH
Q 016873          231 IVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFN-DVV  309 (381)
Q Consensus       231 ~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~-~vl  309 (381)
                      -.+.+.+|+.-.....+|.+++.++++.++                     ..|.....+..+...++|...|+.. ..+
T Consensus       276 ~~~al~tS~~g~~l~~~d~l~~~~~~~~~~---------------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l  334 (381)
T TIGR00837       276 SNFALASSFLGVTLGLFDYLADLFKFDDSK---------------------KGRFKTGLLTFLPPLVFALFYPEGFLYAI  334 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------CCCchhhhhhHHhHHHHHHHhhHHHHHHH
Confidence            777888888877777888877776542110                     1133444555677788899999866 899


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHhccC
Q 016873          310 GILGAMGFWPLTVYFPIEMYKAQKKI  335 (381)
Q Consensus       310 ~LvGa~~~~~l~fi~P~l~~lkl~~~  335 (381)
                      +..| +..+.+.+++|++++.|.||+
T Consensus       335 ~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       335 GYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            9999 888999999999999998754

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.44  E-value=1.7e-11  Score=120.93  Aligned_cols=285  Identities=16%  Similarity=0.160  Sum_probs=176.9

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      |++++.+||+++++..+...+..++.+++|..-.|+.+++.++....        .+.+++.-.+++.++...+.+..+ 
T Consensus        69 ~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~g~-  139 (394)
T PF03222_consen   69 SMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYFGT-  139 (394)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHhhH-
Confidence            78999999999999999999999999999999999999999875210        123333333333333333222221 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873           82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL  161 (381)
Q Consensus        82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~  161 (381)
                      +-+...+-.-+...+......++..+.+        ...++....       .....++...+.++|++++||+.|+++|
T Consensus       140 ~~v~~~n~~lv~~~i~~~~~l~~~~~p~--------~~~~~L~~~-------~~~~~~~~~~~~~lPv~~~Sf~f~~ivP  204 (394)
T PF03222_consen  140 KAVDRINRVLVFGMIISFIILVVYLIPH--------WNPSNLLDA-------PPSPSDWSYILPALPVLVFSFGFHNIVP  204 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh--------cCHHHhhcc-------ccccccHHHHHHHHHHHHHHHHHHhhhH
Confidence            1222222111111111011111111111        111111100       1123444567789999999999999999


Q ss_pred             HHHhhhcCCccccccchhhhhhhHHHHHHHHhhh--hhhhc---------cccCCCCCc--ccccccCCCCchhHHHHHH
Q 016873          162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMGY---------AAFGDLAPN--NLLTGFGFYNPYWLIDIAN  228 (381)
Q Consensus       162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~--g~~GY---------~~fG~~v~~--~Il~n~~~~~~~~~~~~~~  228 (381)
                      ++.+.+++.   .|+.+|+...+..+..++|+..  ...|-         ..-|+++.+  ..+.+  ...+.+...+.+
T Consensus       205 sl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~i~~~~~  279 (394)
T PF03222_consen  205 SLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALAN--VSGSPWISILGS  279 (394)
T ss_pred             HHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHh--hcCCcHHHHHHH
Confidence            999999864   4789999999988888888765  33331         122222221  12222  112334555667


Q ss_pred             HHHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc-hHH
Q 016873          229 AAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FND  307 (381)
Q Consensus       229 ~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~-f~~  307 (381)
                      +.-.+.+.+||-=...-.+|.+++.++.  +++                   +..|...-.+..+-.+++|...|+ |-.
T Consensus       280 ~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~  338 (394)
T PF03222_consen  280 IFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFLI  338 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHHH
Confidence            7777888888865556678888877653  121                   012434444455667888999995 889


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhccCCC
Q 016873          308 VVGILGAMGFWPLTVYFPIEMYKAQKKIGR  337 (381)
Q Consensus       308 vl~LvGa~~~~~l~fi~P~l~~lkl~~~~~  337 (381)
                      .+++.| ...+.+..++|+++..|.||+++
T Consensus       339 al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  339 ALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             HHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            999999 99999999999999999875544

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=99.31  E-value=2.6e-10  Score=112.04  Aligned_cols=281  Identities=13%  Similarity=0.120  Sum_probs=175.7

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      .++|+.+||+|+.+..+......++.+++|+--.||.+++.++..  ..       +.+++.-.++++++.-...+..+ 
T Consensus        77 tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~-------~i~~~~~~llF~~~~~~iv~~gt-  146 (414)
T PRK10483         77 TITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SL-------NVPARAAGFGFALLVAFVVWLST-  146 (414)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CC-------CCcHHHHHHHHHHHHHHHHHhhh-
Confidence            478999999999999999999999999999999999999887641  10       22323333445544444444332 


Q ss_pred             chhhHHH---HHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccch
Q 016873           82 DQVWWLS---IVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI  158 (381)
Q Consensus        82 ~~l~~~S---~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~  158 (381)
                      +.....+   +.+.+.++.   +.+ ......++.    ..+.+.+.         .....+.....++|++++||+.|+
T Consensus       147 ~~vd~~n~~l~~~~i~~f~---~~~-~~l~~~i~~----~~L~~~~~---------~~~~~~~~~~~alPvl~~SFgfh~  209 (414)
T PRK10483        147 KAVSRMTAIVLGAKVITFF---LTF-GSLLGHVQP----ATLFNVAE---------SNASYAPYLLMTLPFCLASFGYHG  209 (414)
T ss_pred             hHHHHHHHHHHHHHHHHHH---HHH-HHHHhhcCH----HHHhcccc---------ccchhHHHHHHHHHHHHhhccCCC
Confidence            3444433   222222111   111 111111110    00111110         011222346789999999999999


Q ss_pred             hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhh--hhhhccc---------cCCCCCcccccccC-CCCchhHHHH
Q 016873          159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMGYAA---------FGDLAPNNLLTGFG-FYNPYWLIDI  226 (381)
Q Consensus       159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~--g~~GY~~---------fG~~v~~~Il~n~~-~~~~~~~~~~  226 (381)
                      ++|++.+.+++.   .|+.+|++..+..+..++|+..  ...|-..         -|++++. .+.... ..++.+...+
T Consensus       210 iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~-L~~~l~~~~~~~~i~~~  285 (414)
T PRK10483        210 NVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDV-LVQALSGVLNSRSLDLL  285 (414)
T ss_pred             cchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHH-HHHHHHHhcCChHHHHH
Confidence            999999999864   3689999999999999999773  2233221         3333321 111110 0122344445


Q ss_pred             HHHHHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc-h
Q 016873          227 ANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-F  305 (381)
Q Consensus       227 ~~~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~-f  305 (381)
                      ..+.-.+.+.+||-=...-.+|.+++.++.+  ++.                   ..|...-.+..+-.+++|+..|+ |
T Consensus       286 ~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~~-------------------~~r~~~~~ltflPPl~~al~~P~~F  344 (414)
T PRK10483        286 LVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DSA-------------------MGRFKTALLTFLPPVVGGLLFPNGF  344 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehhhHhhHHHHHHHhHHHH
Confidence            6677777888888656666788888877542  110                   12333334556777889999997 8


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHhccC
Q 016873          306 NDVVGILGAMGFWPLTVYFPIEMYKAQKKI  335 (381)
Q Consensus       306 ~~vl~LvGa~~~~~l~fi~P~l~~lkl~~~  335 (381)
                      -..++..|.+ .+.+.-++|+++-.|.||+
T Consensus       345 l~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        345 LYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            8899999987 6777789999999999864

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.31  E-value=3.2e-10  Score=111.68  Aligned_cols=303  Identities=11%  Similarity=0.081  Sum_probs=184.7

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      +++++.+||+|+++..+......+..+.+|..-.|+.+.+.+..  +...      +++.....+++.++.....+..+ 
T Consensus        69 ~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~--~~~~------~i~~~~~~l~F~~~~~~iv~~g~-  139 (403)
T PRK15132         69 TLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISD--WTGI------SMSPTAGVLLFTLVAGGVVCVGT-  139 (403)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH--hccC------CCChHHHHHHHHHHHHHHHhccH-
Confidence            67999999999999999999999999999999999999888764  1100      12223344444444333334332 


Q ss_pred             chhhHHHH-HHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           82 DQVWWLSI-VAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        82 ~~l~~~S~-i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      +.....+- +-....+.+.  ....   ...++    .+.++....        +...+  ....++|++.+||+.|+++
T Consensus       140 ~~v~~~n~~L~~~~ii~~~--~~~~---~l~p~----~~~~~L~~~--------~~~~~--~~~~~iPvl~~SFgfh~iI  200 (403)
T PRK15132        140 SSVDLFNRFLFSAKIIFLV--VMLA---LMMPH----IHKVNLLTL--------PLQQG--LALSAIPVIFTSFGFHGSV  200 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHH---HHHHh----cCHHHHhcC--------Ccccc--HHHHHHHHHHHHhhCCccc
Confidence            23332221 1111111111  1111   11110    111111100        00111  2678999999999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCC-----CCcc-----cccccC-CCCchhHHHHHHH
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL-----APNN-----LLTGFG-FYNPYWLIDIANA  229 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~-----v~~~-----Il~n~~-~~~~~~~~~~~~~  229 (381)
                      |++.+.+++.   .|+.+|+..++..+..++|+..=......-+.+     .+++     ++..+. ..+..+...+..+
T Consensus       201 psl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  277 (403)
T PRK15132        201 PSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHL  277 (403)
T ss_pred             HHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHH
Confidence            9999999764   478999999999999998876544333333322     1112     222211 0123455556677


Q ss_pred             HHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc-hHHH
Q 016873          230 AIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDV  308 (381)
Q Consensus       230 ~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~-f~~v  308 (381)
                      .-.+.+.+||-=...-.+|.+++.++++  ++     .              ..|...-.+..+-.+.+|...|+ |...
T Consensus       278 fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~~-----~--------------~~r~~~~~l~flppli~a~~~P~~F~~a  336 (403)
T PRK15132        278 FADLALATSFLGVALGLFDYLADLFQRR--NT-----V--------------GGRLQTGLITFLPPLAFALFYPRGFVMA  336 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccC--cc-----c--------------cCCchhehhhHHHHHHHHHHhHHHHHHH
Confidence            7777888888656666788887776532  10     0              12445555667788899999996 8889


Q ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhccCC---Ccch--hHHHHHHHHHHHHHHHH
Q 016873          309 VGILGAMGFWPLTVYFPIEMYKAQKKIG---RGTT--RWLGLQILNVSCFFITL  357 (381)
Q Consensus       309 l~LvGa~~~~~l~fi~P~l~~lkl~~~~---~~~~--~~~~~~~l~~~g~~~~v  357 (381)
                      ++..|.. .+.+.+++|+++-.|.||.+   +++.  .+..+++.+++|++..+
T Consensus       337 l~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~  389 (403)
T PRK15132        337 LGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG  389 (403)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence            9998875 79999999999999987544   2210  22334555555554433

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.23  E-value=1.3e-09  Score=107.20  Aligned_cols=285  Identities=14%  Similarity=0.079  Sum_probs=175.8

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      .++|+.+||.|+.+..+......++.+++|+--.|+.+++.++.. ...       +.+++.-.++++++.-...+..+ 
T Consensus        75 tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~-~~~-------~i~~~~~~llF~~~~~~~v~~gt-  145 (415)
T PRK09664         75 TITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMN-LGY-------HANPRIVGICTAIFVASVLWISS-  145 (415)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhh-ccC-------CCcHHHHHHHHHHHHHHHHHhch-
Confidence            478999999999999999999999999999999999999887531 100       22333333455555555555443 


Q ss_pred             chhhHHH---HHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccch
Q 016873           82 DQVWWLS---IVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI  158 (381)
Q Consensus        82 ~~l~~~S---~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~  158 (381)
                      +...+.+   +.+.+.+  +.. .+ ......++.    ..+.+.+..       ............++|++++||+.|+
T Consensus       146 ~~vd~~nr~l~~~~ii~--f~~-~~-~~l~~~i~~----~~L~~~~~~-------~~~~~~~~~i~~alPVl~~SFgfh~  210 (415)
T PRK09664        146 LAASRITSLFLGLKIIS--FVI-VF-GSFFFQVDY----SILRDATST-------TAGTSYFPYIFMALPVCLASFGFHG  210 (415)
T ss_pred             hHHHHHHHHHHHHHHHH--HHH-HH-HHHhhcccH----HHHhcCccc-------cccchHHHHHHHHHHHHHHhhhCCC
Confidence            3333333   1121111  111 11 111111100    001110000       0001112246679999999999999


Q ss_pred             hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhh--hhhh---------ccccCCCCCcccccccCCCCchhHHHHH
Q 016873          159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMG---------YAAFGDLAPNNLLTGFGFYNPYWLIDIA  227 (381)
Q Consensus       159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~--g~~G---------Y~~fG~~v~~~Il~n~~~~~~~~~~~~~  227 (381)
                      ++|++.+.+++.   .|+.+|+...+..+..++|...  ...|         -.+.|++++.-+..-....+..+...+.
T Consensus       211 iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~  287 (415)
T PRK09664        211 NIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCL  287 (415)
T ss_pred             cchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHH
Confidence            999999998753   4678899888888888888443  2222         1233444433111100011234555566


Q ss_pred             HHHHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc-hH
Q 016873          228 NAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FN  306 (381)
Q Consensus       228 ~~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~-f~  306 (381)
                      ++...+.+.+||-=...-.+|.+.+.++.+  |++                   ..|...-.+..+-.+..|+..|+ |=
T Consensus       288 ~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~~-------------------~~r~~~~~ltflPPl~~al~~P~gFl  346 (415)
T PRK09664        288 LVFSNLAVASSFFGVTLGLFDYLADLFKID--NSH-------------------GGRFKTVLLTFLPPALLYLIFPNGFI  346 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehhhHhhhHHHHHHhhHHHH
Confidence            777777888888656666788888777542  210                   12333344556677889999997 88


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHhccC
Q 016873          307 DVVGILGAMGFWPLTVYFPIEMYKAQKKI  335 (381)
Q Consensus       307 ~vl~LvGa~~~~~l~fi~P~l~~lkl~~~  335 (381)
                      ..++..|.. .+.+.-++|+++-.|.||+
T Consensus       347 ~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        347 YGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            999999997 5788889999999999864

>TIGR00814 stp serine transporter

Probab=99.06  E-value=4.6e-09  Score=103.59  Aligned_cols=295  Identities=9%  Similarity=0.038  Sum_probs=172.8

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      |++++.|||+++.+..+......+..+.+|....++.++...... .+.+       .+.+.+..+..+..+-.......
T Consensus        70 ~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~-~~~~-------~p~~~i~~lilv~il~~iv~~G~  141 (397)
T TIGR00814        70 EVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQ-LGTA-------PPLRGLLSLALILILVAIMSFGE  141 (397)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-------CcHHHHHHHHHHHHHHHHHHhcH
Confidence            788999999999999999999999999999999999988776531 1111       11221111111111122222345


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873           82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL  161 (381)
Q Consensus        82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~  161 (381)
                      +.+..++-+-....+....+..+..+.+        ...++....|       .......+...+++..++||.+|+.++
T Consensus       142 ~~i~r~~~il~~~~ii~l~~l~~~lip~--------~~~~~L~~~p-------~~~~~~~~i~~alpv~~~SF~~~~iIs  206 (397)
T TIGR00814       142 KLLFKIMGPLVFPLVLILVLLSLYLIPH--------WNGANLTTFP-------SFNGFLKTLWLTIPVMVFSFNHSPIIS  206 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCHHHHhcCC-------cccchHHHHHHHHHHHHHHHHccccch
Confidence            5555555332211111111111111111        1111111000       011223567889999999999999999


Q ss_pred             HHHhhh----cCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCC-----Ccc--cccccC-CCCchhHHHHHHH
Q 016873          162 EIQDTI----RSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----PNN--LLTGFG-FYNPYWLIDIANA  229 (381)
Q Consensus       162 ~i~~~M----~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v-----~~~--Il~n~~-~~~~~~~~~~~~~  229 (381)
                      +...+.    ++|+...|+.+|+...+..+..++|+..-+..-...+++.     ++|  ++.... ..+..+...+...
T Consensus       207 sl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~  286 (397)
T TIGR00814       207 SFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPI  286 (397)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHH
Confidence            997444    3332235678899999998888888776555555544322     122  111000 0112233334444


Q ss_pred             HHHHHHHHhhheeccchHHHHHHHHhc-cCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHH
Q 016873          230 AIVVHLVGAYQVFCQPLFAFVEKWSAK-KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDV  308 (381)
Q Consensus       230 ~~~i~~~~s~~l~~~p~~~~ie~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~v  308 (381)
                      .-.+.+..||.=...-.+|.+++.+.+ +.++++.        .      +.+..+...-.+..+.++..|..=|++=++
T Consensus       287 f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~w~~~~~n~~il~~  352 (397)
T TIGR00814       287 VAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKK--------I------NIRKLNRAIAIFIVLTTWIVAYINPSILSF  352 (397)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccc--------c------CHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            455677777765666778888887732 1111110        0      111334455566678889999999999999


Q ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhc
Q 016873          309 VGILGAMGFWPLTVYFPIEMYKAQK  333 (381)
Q Consensus       309 l~LvGa~~~~~l~fi~P~l~~lkl~  333 (381)
                      ++-+|+--...+.|++|+..-.|..
T Consensus       353 i~~~~gp~~a~i~~~~p~~~~~~v~  377 (397)
T TIGR00814       353 IEALGGPIIAMILFLMPMYAIYKVP  377 (397)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHccH
Confidence            9988888889999999997777763

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.92  E-value=2.3e-07  Score=91.69  Aligned_cols=321  Identities=9%  Similarity=0.106  Sum_probs=182.7

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      |++++.|||.++.+..+.-.+..+-.+.+|.+.+.+.++..+... .+.    +  +.++....+++.+++....+..+ 
T Consensus        86 ~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~q-l~~----~--~~~r~l~slifv~~l~~iv~~G~-  157 (443)
T PRK13629         86 ETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQ-LGF----A--PLNRGFVALFLLLLMAFVIWFGK-  157 (443)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCc----C--CccHHHHHHHHHHHHHHHHHhhH-
Confidence            789999999999999999999999999999988888887754321 110    0  12333344444444444444443 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccc--ccccCCcccchhhHHHHHHHHHHHHHHhccchh
Q 016873           82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIG--TLTSAGTVTGTQKLWRSLQALGAIAFAYSFSII  159 (381)
Q Consensus        82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~  159 (381)
                      +.+-.++-+ .+.  ...++.+..+++ .++... ...+.+.+.+  ++     ............++|++.|||+-|+.
T Consensus       158 ~~v~kv~~~-Lv~--~~i~~l~~l~~~-LiP~w~-~~~L~~~~~~~~~~-----~~~~~~~~~l~~~iPv~v~SF~f~~i  227 (443)
T PRK13629        158 DLMVKVMSY-LVW--PFIASLVLISLS-LIPYWN-SAVIDQVDLGSLSL-----TGHDGILVTVWLGISIMVFSFNFSPI  227 (443)
T ss_pred             HHHHHHHHH-HHH--HHHHHHHHHHHH-HHHHcC-HHHHhcCccccccc-----cccccHHHHHHHHHHHHHHHHhcccc
Confidence            222222211 010  001111111111 111100 0001110000  00     00011113467889999999999999


Q ss_pred             hHHHHhhhcCC-------ccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCC-----Cccc--ccccC--CCC---c
Q 016873          160 LLEIQDTIRSP-------PAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----PNNL--LTGFG--FYN---P  220 (381)
Q Consensus       160 ~~~i~~~M~~P-------~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v-----~~~I--l~n~~--~~~---~  220 (381)
                      +|+....+|+.       +...|+.+|+..++..+..++|+..-+..-..-+++-     +.|+  +..+.  ..+   .
T Consensus       228 Issl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~  307 (443)
T PRK13629        228 VSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGT  307 (443)
T ss_pred             chHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccc
Confidence            99998885432       1115778999999998888888776554444444321     1222  22110  111   0


Q ss_pred             -----hhHHHHHHHHHHHHHHHhhheeccchHHHHHHHHhc-c-CCCCccCcccccccCCCccccccchhHHHHHHHHHH
Q 016873          221 -----YWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-K-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVV  293 (381)
Q Consensus       221 -----~~~~~~~~~~~~i~~~~s~~l~~~p~~~~ie~~~~~-~-~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~  293 (381)
                           .+...+..+.-.+.+..||-=...-.+|.++.+..+ . .++++.        .      +.+..+.....+..+
T Consensus       308 ~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~  373 (443)
T PRK13629        308 KSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTK--------V------SLGKLNTISMIFIMG  373 (443)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--------c------CHHHHHHHHHHHHHH
Confidence                 223344455556677888755555678888887732 1 111110        0      112345566667788


Q ss_pred             HHHHHHHHccchHHHHHHhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHH
Q 016873          294 LTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFI  355 (381)
Q Consensus       294 ~~~~iA~~iP~f~~vl~LvGa~~~~~l~fi~P~l~~lkl~~~~~~~~~~~~~~~l~~~g~~~  355 (381)
                      .++..|..=|++=++++-+|+-....+.|++|+..-.|...-++++.+. .|+.+.+.|++.
T Consensus       374 ~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~~~-~n~fv~~~Gl~~  434 (443)
T PRK13629        374 STWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRL-DNVFVTVIGLLT  434 (443)
T ss_pred             HHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCCCc-hhHHHHHHHHHH
Confidence            8899999999999999988888889999999998777764323322222 366666666653

>PRK11021 putative transporter; Provisional

Probab=98.46  E-value=0.0001  Score=73.38  Aligned_cols=64  Identities=16%  Similarity=0.422  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh--hccccCC
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM--GYAAFGD  205 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~--GY~~fG~  205 (381)
                      ++.++..++...+|+|.|-......-+|+|||+   |+++|+...+..++.++|......  +...++|
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~  240 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVVVLHFPAYGD  240 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            445678889999999999999999999999994   899999999999999999987654  3343444

>PRK10746 putative transport protein YifK; Provisional

Probab=98.43  E-value=9.4e-05  Score=74.82  Aligned_cols=61  Identities=15%  Similarity=0.042  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA  202 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~  202 (381)
                      .+.++..++...+|+|.|-..+...-+|+|||+   |+++|+...+...+.++|.......-..
T Consensus       198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~~~~  258 (461)
T PRK10746        198 GWKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIFVIVTI  258 (461)
T ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence            345677899999999999999999999999994   8999999888888888887764433333

>PRK10655 potE putrescine transporter; Provisional

Probab=98.43  E-value=0.0001  Score=74.01  Aligned_cols=57  Identities=11%  Similarity=0.065  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhc
Q 016873          141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY  200 (381)
Q Consensus       141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY  200 (381)
                      .++..++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|+.......
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999995   89999999999999999988765433

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.42  E-value=6e-05  Score=75.87  Aligned_cols=56  Identities=11%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  198 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~  198 (381)
                      +.++..++....|+|.|-......-+|+|||+   |+.+|+...+..++.++|.++.+.
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~  245 (445)
T PRK10644        190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA  245 (445)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            34566778899999999999999999999995   899999999999999999888765

>TIGR00909 2A0306 amino acid transporter

Probab=98.40  E-value=0.00016  Score=72.35  Aligned_cols=174  Identities=10%  Similarity=0.046  Sum_probs=104.1

Q ss_pred             hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCccc---Cchh--h-HHHHHHHHHhh
Q 016873            3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS---SNGY--M-ITFGIIEVLFS   76 (381)
Q Consensus         3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~---~~~~--~-ii~~~v~~pl~   76 (381)
                      -.++.+||+...++.+..++.....+..+....++.+..+.+..  ..+.++ .+...   ...+  . +++..+...+ 
T Consensus        72 ~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l-  147 (429)
T TIGR00909        72 YAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGV--GLDLPA-VLTAKPGNGGVFNLPALLIVLFLTYI-  147 (429)
T ss_pred             eHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccCch-hhhcCCcccccccHHHHHHHHHHHHH-
Confidence            46788999999999999888887777778888888877776521  001100 00000   0011  1 1121222222 


Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhcc
Q 016873           77 QIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSF  156 (381)
Q Consensus        77 ~l~~l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~  156 (381)
                      -.+..+..+.++.+.....+...++.++....+...        .+  +.+      . .+.+..+...++...+|+|.|
T Consensus       148 ~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~--------~~--~~~------~-~~~~~~~~~~~~~~~~~af~G  210 (429)
T TIGR00909       148 LYLGAKESGKVNDILVVLKVAALLLFAALGAIHFAS--------NN--YTP------F-MPMGFGGVGAATALVFFAFIG  210 (429)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH--------Hh--cCC------C-CCCcHHHHHHHHHHHHHHHhh
Confidence            234456666665554443333222222222221100        01  110      0 112334667889999999999


Q ss_pred             chhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhc
Q 016873          157 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY  200 (381)
Q Consensus       157 ~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY  200 (381)
                      ........+|+|||+   |+.+|++..+..++.++|........
T Consensus       211 ~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       211 FEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999994   88999999999999999998865444

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.36  E-value=9.6e-05  Score=74.68  Aligned_cols=167  Identities=12%  Similarity=0.017  Sum_probs=89.1

Q ss_pred             hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCch
Q 016873            4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ   83 (381)
Q Consensus         4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~   83 (381)
                      +++.+||...+++.+...+.....+.+.....++.++...+      +       .+...+.++...+...+.. ...+.
T Consensus        82 ~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p------~-------~~~~~~~~i~~~~~~~lN~-~gv~~  147 (456)
T PRK10238         82 AYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP------E-------IPTWVSAAVFFVVINAINL-TNVKV  147 (456)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------c-------CcHHHHHHHHHHHHHHHHH-HhHHH
Confidence            46789999999999999888887777777666766554321      1       1111122222111211111 12333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh---hhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           84 VWWLSIVAAIMSFTYSTAGLGLGI---GKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        84 l~~~S~i~~~~~~~~~~iiv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      ++.+..+..+..+...++.++..+   ..+...+  +...++. ++ +    ..-.+..+.++..+++..+|+|.|-...
T Consensus       148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~--~~~~~~~-~~-~----~~~~~~g~~~~~~~~~~~~~af~G~e~~  219 (456)
T PRK10238        148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGP--QATVSNL-WD-Q----GGFLPHGFTGLVMMMAIIMFSFGGLELV  219 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--Ccccccc-CC-C----CCCccccHHHHHHHHHHHHHHhcCHHHH
Confidence            333333222222111111111111   1111111  0111110 00 0    0001223345667788899999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhh
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC  195 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~  195 (381)
                      ...-+|+|||+   |+.+|++..+.....++|+..
T Consensus       220 ~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        220 GITAAEADNPE---QSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence            99999999994   889999988887777777654

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.36  E-value=0.00016  Score=73.21  Aligned_cols=60  Identities=12%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccC
Q 016873          141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG  204 (381)
Q Consensus       141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG  204 (381)
                      .++..++....|+|.|-.....+-+|+||+    |+++|++..+...+..+|..+.+..+...+
T Consensus       195 ~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       195 TQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            345578889999999999988888888875    799999999999999999998876554444

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.34  E-value=0.00014  Score=73.27  Aligned_cols=57  Identities=21%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  198 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~  198 (381)
                      .+.++..++...+|+|.|-......-+|+|||+   |+++|+...++..+..+|....+.
T Consensus       179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345788999999999999999999999999994   889999999999999999886554

>PRK10249 phenylalanine transporter; Provisional

Probab=98.33  E-value=0.00022  Score=72.16  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  198 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~  198 (381)
                      .+.++..++...+|+|.|-......-+|+|||+   |+.+|++..+...+..+|......
T Consensus       207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~  263 (458)
T PRK10249        207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVV  263 (458)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677899999999999999999999999994   889999999999999999775443

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.32  E-value=0.00014  Score=75.20  Aligned_cols=183  Identities=11%  Similarity=0.048  Sum_probs=99.3

Q ss_pred             hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhc-c-cccC--CCCCCCcccCchhhHHHH-HHHHHhhcC
Q 016873            4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSN-C-FQKS--GGKDPCHMSSNGYMITFG-IIEVLFSQI   78 (381)
Q Consensus         4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~-~-~~~~--~~~~~~~~~~~~~~ii~~-~v~~pl~~l   78 (381)
                      .++.+|+...+++.+..++.....+.+.....++.+..++... . +...  ..+.+ ........+... ++.+-..-.
T Consensus        99 ~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~  177 (557)
T TIGR00906        99 SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLS  177 (557)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHH
Confidence            4678999988999998887766555554444555555444310 0 0000  00000 011111111111 111112233


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccch
Q 016873           79 PDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI  158 (381)
Q Consensus        79 ~~l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~  158 (381)
                      +..+..+.+..+..+..+...+++++.+..+...+   .....+. .++     +.-.+..+.+++.+....+|+|.|-.
T Consensus       178 ~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~---~~~~~~~-~~~-----~~f~p~g~~g~l~g~~~~~faf~Gfd  248 (557)
T TIGR00906       178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADVA---NWSITEE-KGA-----GGFMPYGFTGVLSGAATCFFAFIGFD  248 (557)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch---hcccccc-ccC-----CCCCCcchHHHHHHHHHHHHHHhhHH
Confidence            45666666665444433332222333333222110   0110000 000     00112234577889999999999999


Q ss_pred             hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhh
Q 016873          159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG  199 (381)
Q Consensus       159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~G  199 (381)
                      .+...-+|+|||+   |+++|+...++.+++++|..+.+.-
T Consensus       249 ~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l  286 (557)
T TIGR00906       249 AIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAAL  286 (557)
T ss_pred             HHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999995   8899999999999999999886543

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.31  E-value=0.00028  Score=71.64  Aligned_cols=176  Identities=8%  Similarity=0.013  Sum_probs=95.9

Q ss_pred             hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHH-HHHhhcCCCC
Q 016873            3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGII-EVLFSQIPDF   81 (381)
Q Consensus         3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v-~~pl~~l~~l   81 (381)
                      -+++.+||+...++.+...........++.....+.+..+.+.  +..   +.  ..  ..+.....++ ..-..-.+..
T Consensus        78 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~--~~~---~~--~~--~~~~~~~~~~~~~~~ln~~Gi  148 (473)
T TIGR00905        78 YAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL--FGS---GN--PV--PSILGASVLLWVFTFLVLRGV  148 (473)
T ss_pred             hHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcC---CC--cH--HHHHHHHHHHHHHHHHHHhCH
Confidence            4678999999999999887766655566666655656555442  100   00  00  1111111111 1111223445


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873           82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL  161 (381)
Q Consensus        82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~  161 (381)
                      +..+.+..+..+..+...++.++..+.....+.   .. .+  +.++   ..+.....+.++..++...+|+|.|-....
T Consensus       149 ~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~---~~-~~--~~~~---~~p~~~~~~~~~~~~~~~~~~af~G~e~~~  219 (473)
T TIGR00905       149 RQAAFINTITTIAKLIPLFLFIIIGWFWFKLDL---FT-AD--FWGH---DVPSLGSVFSQVKNTMLVTLWVFIGIEGAV  219 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh---cc-cc--cCcc---CCCcccchHHHHHHHHHHHHHHHHhHHHHH
Confidence            555544444333222211122222221110100   00 00  0000   000011233456778899999999999999


Q ss_pred             HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhc
Q 016873          162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY  200 (381)
Q Consensus       162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY  200 (381)
                      ..-+|+|| +   |+.+|++..+..++.++|........
T Consensus       220 ~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       220 VSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 5   89999999999999999988866533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.30  E-value=0.00047  Score=70.01  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  198 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~  198 (381)
                      +.++..++...+|+|.|-......-+|+|||+   |+.+|++..+...+..+|....+.
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677889999999999999999999999995   899999999999999999987543

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.29  E-value=0.00025  Score=71.49  Aligned_cols=62  Identities=21%  Similarity=0.136  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccC
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG  204 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG  204 (381)
                      +.++..++...+|+|.|-......-+|+|||+   |+.+|+...+......+|+..........+
T Consensus       200 ~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p  261 (452)
T TIGR01773       200 IGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVALLP  261 (452)
T ss_pred             HHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence            34678899999999999999999999999994   889999988888888888876554443333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.28  E-value=0.00023  Score=71.49  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhcccc
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF  203 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~f  203 (381)
                      +..++..++....|+|.|-......-+|+|||+   |+.+|+...+...+.++|+...+.-....
T Consensus       185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVISGMF  246 (435)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            456788899999999999999999999999994   89999999999999999998877544333

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.28  E-value=0.00042  Score=70.02  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  198 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~  198 (381)
                      +.+...++....|+|.|-......-+|+|||+   |+.+|+...+...+..+|......
T Consensus       198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677889999999999999999999999994   889999988877777788666443

>PRK15049 L-asparagine permease; Provisional

Probab=98.27  E-value=0.00033  Score=71.61  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhcccc
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF  203 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~f  203 (381)
                      .+.+.+.++...+|+|.|-..+...-+|+|||+   |+.+|++..++..+.++|+..........
T Consensus       218 g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~  279 (499)
T PRK15049        218 GLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLL  279 (499)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence            344566677889999999999999999999994   88999999888888888877655443333

>TIGR00908 2A0305 ethanolamine permease

Probab=98.27  E-value=0.00021  Score=71.82  Aligned_cols=168  Identities=7%  Similarity=-0.059  Sum_probs=92.0

Q ss_pred             hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCch
Q 016873            4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ   83 (381)
Q Consensus         4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~   83 (381)
                      +++.+||....++.+...+.......++....++.++...+.             .....+.++...+...+ -.+..+.
T Consensus        77 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~~~~l-n~~g~~~  142 (442)
T TIGR00908        77 ARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIVFIGI-NILGVGE  142 (442)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHHHHHH-HHHHHHH
Confidence            577899999999999888877766777777777776655321             01111111111111111 1223344


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhHHH
Q 016873           84 VWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEI  163 (381)
Q Consensus        84 l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~~i  163 (381)
                      .+.+..+..+..+... ++++.......+ . .+. .++ ++.+.    +...+..+.+++.++...+|+|.|.......
T Consensus       143 ~~~i~~~~~~~~~~~l-~i~~~~~~~~~~-~-~~~-~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~  213 (442)
T TIGR00908       143 AAKLEFVVTAVAIIAL-GVFIGAMVPHFD-S-ANL-FNG-PQTGA----SSFLPGAYVGVFAAIPFAIWFFLAVEGVAMA  213 (442)
T ss_pred             HHhHHHHHHHHHHHHH-HHHHHHHhccCC-H-HHh-ccC-CccCC----CCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443332222111111 111111110000 0 000 000 00000    0011223456788888999999999999999


Q ss_pred             HhhhcCCccccccchhhhhhhHHHHHHHHhhhhh
Q 016873          164 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC  197 (381)
Q Consensus       164 ~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~  197 (381)
                      -+|+|||+   |+.+|++..+..++..+|...-.
T Consensus       214 aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       214 AEETKNPK---RDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence            99999994   88999999999988888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.24  E-value=0.00042  Score=70.30  Aligned_cols=59  Identities=15%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhc
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY  200 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY  200 (381)
                      .+.++..++...+|+|.|-......-+|+|||+   |+++|+...+...+.++|......-+
T Consensus       209 g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        209 GLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            344678899999999999999999999999994   88999997777777888876655444

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.17  E-value=0.0004  Score=69.91  Aligned_cols=56  Identities=21%  Similarity=0.329  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  198 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~  198 (381)
                      +.+...++...+|+|.|-......-+|+|||+   |+.+|++..++.++.++|......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence            44667888999999999999999999999994   899999999999999999887654

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.15  E-value=0.00012  Score=73.14  Aligned_cols=176  Identities=13%  Similarity=0.084  Sum_probs=99.2

Q ss_pred             hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHH-HH--HHHHHhhcCCC
Q 016873            4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMIT-FG--IIEVLFSQIPD   80 (381)
Q Consensus         4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii-~~--~v~~pl~~l~~   80 (381)
                      +++++||+...++.+...+.....+.++....++.+...+..     +.+    . ++....++ ..  +....+ -.+.
T Consensus        68 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~~~~~~~i~~~~~~~~~~l-~~~g  136 (426)
T PF13520_consen   68 VSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP-----DLN----P-SPWPQFLIAIILILLFTLL-NLLG  136 (426)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----GGT----C-SHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred             hhhcccccchhcccceeEEEeeccccccccchhhhhhhcccc-----ccc----c-ccchheeeeecccccceEe-eech
Confidence            577899998899999888888887777777777766544321     100    0 01111111 11  112222 3344


Q ss_pred             CchhhHHHHHHHHHHH-HHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchh
Q 016873           81 FDQVWWLSIVAAIMSF-TYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSII  159 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~-~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~  159 (381)
                      .+..+.+..+..+..+ ...++.++..+.....+.....+....+..+          ....+.+.+++..+|+|.|-..
T Consensus       137 ~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~G~e~  206 (426)
T PF13520_consen  137 IKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFP----------SGWPGFLAGFSVAFFAFSGFEA  206 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSC----------SSSSHHHHHHHHHGGGGTTTTH
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCC----------ccccchhhHHHHHHhhcccccc
Confidence            5566665544444333 2222222233332211100000000000110          1111357889999999999999


Q ss_pred             hHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873          160 LLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD  205 (381)
Q Consensus       160 ~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~  205 (381)
                      ....-+|+||     |+.+|++..+..++.++|......-....++
T Consensus       207 ~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  207 IASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPD  247 (426)
T ss_dssp             HHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred             cccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccc
Confidence            9999999875     5899999999999999999986665555544

...

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.15  E-value=0.00058  Score=69.29  Aligned_cols=57  Identities=18%  Similarity=0.118  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhh
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG  199 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~G  199 (381)
                      ..+...++...+|+|.|-......-+|+|||+   |+++|++..+...+..+|+......
T Consensus       205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677788889999999999999999999995   8899999999999999998876543

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.12  E-value=0.00096  Score=67.72  Aligned_cols=53  Identities=15%  Similarity=0.070  Sum_probs=44.2

Q ss_pred             HHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccC
Q 016873          149 AIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG  204 (381)
Q Consensus       149 ~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG  204 (381)
                      .+.|+|.|-......-+|+|||+   |+.+|++..+..++..+|....+.-...-+
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~  254 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIP  254 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            46789999999999999999995   899999999999999999876654333333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.11  E-value=0.00024  Score=69.87  Aligned_cols=293  Identities=13%  Similarity=0.146  Sum_probs=160.0

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHH--HHH--HHHhhc
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITF--GII--EVLFSQ   77 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~--~~v--~~pl~~   77 (381)
                      |.+++.+|+|+.+++++.-...-.-++++=+.-+|.-++..++             +.  ..|+...  .++  .+=+.-
T Consensus        81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP-------------~v--P~Wv~al~~~~l~~~~NL~s  145 (462)
T COG1113          81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP-------------DV--PQWVFALAAVVLLLAVNLIS  145 (462)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CC--cHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999998888888888888876665432             11  2333332  222  222445


Q ss_pred             CCCCchhh-HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhcc
Q 016873           78 IPDFDQVW-WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSF  156 (381)
Q Consensus        78 l~~l~~l~-~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~  156 (381)
                      .|.+.++- |++++=++..+.+.++.++..+ .+..++......++.. +     +.--.+..+.+++.++-+.+|||+|
T Consensus       146 Vk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~-~g~~~~~~~~g~snl~-~-----hGGffP~G~~g~~~~~~~v~Faf~G  218 (462)
T COG1113         146 VKVFGELEFWFALIKVAAIIAFIVVGIVLLF-GGFGGGGGAAGFSNLW-D-----HGGFFPNGFLGFLSALQIVMFAFGG  218 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCccccccc-c-----CCCcCCCchHHHHHHHHHHHHHHhh
Confidence            66677777 6676655554444333333322 2332221111222110 0     0011366677889999999999999


Q ss_pred             chhhHHHHhhhcCCccccccchhhhhhhHHHHHHHH-----hhhhhhhccccCCCCCcc--cccccCCCCchhHHHHHHH
Q 016873          157 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFY-----LLCGCMGYAAFGDLAPNN--LLTGFGFYNPYWLIDIANA  229 (381)
Q Consensus       157 ~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly-----~~~g~~GY~~fG~~v~~~--Il~n~~~~~~~~~~~~~~~  229 (381)
                      ...+=.--+|-+|||   |..+|+.+--..=+.+.|     +++.+.-+-.++++.++-  +...++.   .+...+.|.
T Consensus       219 iElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi---~~Aa~i~N~  292 (462)
T COG1113         219 IELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI---PFAAGIMNF  292 (462)
T ss_pred             HHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC---cccccceeE
Confidence            999988899999995   778888765544444444     555666666677765542  2222221   122223333


Q ss_pred             HHHHHHHHhhheeccchHHHHHHHHhcc-CCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc--hH
Q 016873          230 AIVVHLVGAYQVFCQPLFAFVEKWSAKK-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF--FN  306 (381)
Q Consensus       230 ~~~i~~~~s~~l~~~p~~~~ie~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~--f~  306 (381)
                      .++.....+.-=-++..-+.+..+-.+. -|+ .+ .+-        ++++..+.-++..+....++.++....|.  |+
T Consensus       293 VVLtAa~S~~NSglystsRmL~~la~~g~APk-~~-~kl--------sk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~  362 (462)
T COG1113         293 VVLTAALSALNSGLYSTSRMLYSLAKQGDAPK-AF-AKL--------SKRGVPVNAILLSAVVLLLGVVLNYILPEKVFE  362 (462)
T ss_pred             EEeechhhcccccccccchHHHHHhhcCcccH-hH-hhc--------cccCCCHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            2222222222111112233333332111 111 00 000        11111144566777778888888999993  45


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHhcc
Q 016873          307 DVVGILGAMGFWPLTVYFPIEMYKAQKK  334 (381)
Q Consensus       307 ~vl~LvGa~~~~~l~fi~P~l~~lkl~~  334 (381)
                      .+.+..+....  ....+=.+.|+|.||
T Consensus       363 ~v~s~s~~~~l--~vW~~I~~s~l~~rk  388 (462)
T COG1113         363 LVTSSSGLGLL--FVWLMILLSQLKLRK  388 (462)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence            55554443322  222233678888876

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.05  E-value=0.0023  Score=70.06  Aligned_cols=184  Identities=15%  Similarity=0.053  Sum_probs=97.8

Q ss_pred             hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCc
Q 016873            3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD   82 (381)
Q Consensus         3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~   82 (381)
                      ..+++||+.....+.++.+..+...+..|.+..++.+..+++..+..  ...++ ....+.+.++..+++..+.+ ...+
T Consensus       148 yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~--~~~~~-~~~~~iia~i~l~ll~~In~-~Gvk  223 (953)
T TIGR00930       148 LISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK--IMVDP-INDIRIYGTVTVVVLLGISF-AGME  223 (953)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccCc-cccchHHHHHHHHHHHHHHH-hhHH
Confidence            35678999988888999998888888899999999888876531110  00000 01112222222222222222 2233


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcc-cchhhHH-HHHHHHHHHHHHhccchhh
Q 016873           83 QVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTV-TGTQKLW-RSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        83 ~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~a~g~i~faf~~~~~~  160 (381)
                      ..+.+..+-.+..+...+.+++.++... .+ .......+.+..+  ...+. +...+.. +++..++++++||.|-...
T Consensus       224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~-~~-~~~~g~~~~~~~~--f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ag  299 (953)
T TIGR00930       224 WENKAQVLFLVIVLLSILNIFVGTIIPA-FD-KPAKGFFGLGNEI--FSENFIPGIPGPEGGFFSLFGIFFPSVTGILAG  299 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeecC-CC-CCccceeeccchh--hhhccCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            3333332221111111111111111100 00 0000011100000  00000 0011111 2566788888899999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhh
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC  197 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~  197 (381)
                      ..+-+|+|||+   |+.+|++..++.+++++|+++.+
T Consensus       300 an~sgElKnP~---r~IPratl~ai~i~~vlYllv~~  333 (953)
T TIGR00930       300 ANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVV  333 (953)
T ss_pred             HHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999995   89999999999999999999876

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=98.01  E-value=0.0017  Score=66.45  Aligned_cols=51  Identities=16%  Similarity=0.118  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhh
Q 016873          144 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC  197 (381)
Q Consensus       144 ~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~  197 (381)
                      ...+..++|+|.|-......-+|||||+   |+++|++..+..++..+|....+
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~~  247 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGGF  247 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence            3445556899999999999999999995   89999999999888888876443

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.95  E-value=0.0037  Score=63.58  Aligned_cols=52  Identities=12%  Similarity=0.019  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhh
Q 016873          141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC  195 (381)
Q Consensus       141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~  195 (381)
                      ++...++-...|+|.|-......-+|+|||+   |+++|++..+..+..+++.+.
T Consensus       217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~  268 (482)
T TIGR00907       217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCF  268 (482)
T ss_pred             hhhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHH
Confidence            3456666778899999999999999999995   899999999887766544433

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.95  E-value=0.0014  Score=67.03  Aligned_cols=57  Identities=19%  Similarity=0.175  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhh
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG  199 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~G  199 (381)
                      ..++..++...+|+|.|-.......+|+|||+   |+.+|++..+..++.++|+...+.-
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999994   8899999999999999999986543

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.88  E-value=0.0032  Score=63.29  Aligned_cols=179  Identities=13%  Similarity=0.142  Sum_probs=106.6

Q ss_pred             hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHh--hcCCCC
Q 016873            4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLF--SQIPDF   81 (381)
Q Consensus         4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl--~~l~~l   81 (381)
                      +++.+||+...++.+...+.......+..+..++.+..+.+...    ..    ..+...+.++..++...+  .-.+..
T Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~ln~~G~  153 (466)
T COG0531          82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG----LL----SIGPLLIILIALALIALLTLLNLRGI  153 (466)
T ss_pred             hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----hh----cCCchHHHHHHHHHHHHHHHHHHhhH
Confidence            57889988878889998888888888888888876666544210    00    001112222222222111  123344


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873           82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL  161 (381)
Q Consensus        82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~  161 (381)
                      +..+....+..+..+...+++.+..+.....+.   ..... ..        ........+...+++...++|.|-....
T Consensus       154 ~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~f~G~e~~~  221 (466)
T COG0531         154 KASAKINSIITILKIIILLIFIILGLFAFGFSN---GNLFA-PF--------NPGGGSFGGILAAILLAFFAFTGFEAIA  221 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---cccCC-Cc--------ccccchHHHHHHHHHHHHHHhhcHHHHH
Confidence            444444444433333322223223233221110   00000 00        0011222357788999999999999999


Q ss_pred             HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873          162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD  205 (381)
Q Consensus       162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~  205 (381)
                      +.-+|+|||+   |+.+|+...++.++..+|......-....++
T Consensus       222 ~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         222 TLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            9999999994   7899999999999999999988877777665

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.86  E-value=0.0012  Score=65.97  Aligned_cols=293  Identities=13%  Similarity=0.113  Sum_probs=148.2

Q ss_pred             hhcCCCcceeehHhHHHHHH-hHHHHHHHhhhhh-HHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCch
Q 016873            6 ANLGGKKVIFCGLIQYLNLF-GVAIGYTIAASVS-MMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ   83 (381)
Q Consensus         6 ~~~G~~~~~~v~~~~~i~~~-g~~i~ylI~~g~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~   83 (381)
                      ++||+.......+.-.+... ..+..+-+..+|= +++.++           .|+.++..--+ .+..++-+....+..+
T Consensus        86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----------~c~~p~~~~~l-la~~~l~~lt~~n~~~  153 (479)
T KOG1287|consen   86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----------LCDVPRVASKL-LAAALLVLLTLINSFS  153 (479)
T ss_pred             HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----------CCCCchHHHHH-HHHHHHHHHHHHhhhh
Confidence            56777654444444333333 3335566666663 444432           13333332222 3333333344566777


Q ss_pred             hhHHHHHHHHHHHH---HHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           84 VWWLSIVAAIMSFT---YSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        84 l~~~S~i~~~~~~~---~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      +++.+.+=.++++.   .+.++++.+++.............+.+ +         ...+.-+...|+=.-.|||.|=..+
T Consensus       154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~-g---------~~~~~g~i~lafysglfa~~GWd~l  223 (479)
T KOG1287|consen  154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE-G---------SDTDVGNIALAFYSGLFAFSGWDYL  223 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc-c---------CcCchHHHHHHHHHhhhcccCchhh
Confidence            88777665555442   233333344442222111000000010 0         1122234667888889999999999


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccc------cCC-CCchhHHHHHHHHHHH
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTG------FGF-YNPYWLIDIANAAIVV  233 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n------~~~-~~~~~~~~~~~~~~~i  233 (381)
                      --+-+|+|||   +|+++|+...++.+++++|+.+=+..+.+--   .+.++.+      ++. ..+.+. -.+.+++.+
T Consensus       224 N~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~Val  296 (479)
T KOG1287|consen  224 NYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVAL  296 (479)
T ss_pred             ccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHH
Confidence            9999999999   4999999999999999999998775554432   2233222      000 001121 222333344


Q ss_pred             HHHHhhheeccchHHHHHHHHh-ccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHh
Q 016873          234 HLVGAYQVFCQPLFAFVEKWSA-KKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL  312 (381)
Q Consensus       234 ~~~~s~~l~~~p~~~~ie~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~Lv  312 (381)
                      ..+++.--.+.-..+.+...-+ .+.|+. + +..        .+++. ..+  ...++..+...+...+.+++.+++.+
T Consensus       297 S~~G~~n~~ifs~SR~~~~~areG~LP~~-~-s~i--------~~~~~-TP~--~allf~~~~~i~~~~~~d~~~LIny~  363 (479)
T KOG1287|consen  297 SLIGSLNSVIFSSSRLFYAGAREGHLPAF-F-SMI--------SVRRF-TPR--PALLFSGLLSIVLSLIGDFDQLINYV  363 (479)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHccCccHH-H-Hhh--------cCCCC-CCh--HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4444432222222112211110 111210 0 000        00000 001  11222333344445566899999998


Q ss_pred             hhhhhhhHHHHHHHHHHHHhccCCCcch
Q 016873          313 GAMGFWPLTVYFPIEMYKAQKKIGRGTT  340 (381)
Q Consensus       313 Ga~~~~~l~fi~P~l~~lkl~~~~~~~~  340 (381)
                      +=.......+.+=+++|++.++++..++
T Consensus       364 sf~~~l~~~l~~~gll~lR~k~p~~~rP  391 (479)
T KOG1287|consen  364 SFAYWLFRGLSMAGLLWLRWKHPPLPRP  391 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            8887777888888999999887665433

>PRK10836 lysine transporter; Provisional

Probab=97.84  E-value=0.0085  Score=61.10  Aligned_cols=60  Identities=10%  Similarity=0.080  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA  202 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~  202 (381)
                      +.+.+.+.....|+|.|-......-+|+|||+   |+.+|++..++..+..+|......-...
T Consensus       204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~  263 (489)
T PRK10836        204 FAAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLI  263 (489)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            33455556667899999999999999999995   8999999999999999999776543333

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=97.66  E-value=0.054  Score=55.03  Aligned_cols=55  Identities=13%  Similarity=-0.097  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873          141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  198 (381)
Q Consensus       141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~  198 (381)
                      ..+..+....+|+|.|-.....+-+|+|||+   |+.+|++..+..+...+|...-+.
T Consensus       213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~  267 (475)
T TIGR03428       213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILG  267 (475)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3455566778899999999999999999995   899999999998887655554443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.63  E-value=0.03  Score=57.20  Aligned_cols=55  Identities=22%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873          141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  198 (381)
Q Consensus       141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~  198 (381)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..+...+..+|....+.
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            3566778889999999999999999999994   889999999999999999876443

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.53  E-value=0.0041  Score=60.63  Aligned_cols=172  Identities=15%  Similarity=0.147  Sum_probs=98.1

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHH-HHHHHHhhcCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITF-GIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~-~~v~~pl~~l~~   80 (381)
                      |..++++||+...++.+....+.+..+..-.-..+|.++...    .+ +         ...|.+.. .++..-....+.
T Consensus        68 ~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~-~---------tp~~~~~l~~l~~~~~~~~~G  133 (359)
T TIGR00912        68 EILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LP-R---------TPIIVIIILIIIVSIYIVRKG  133 (359)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC-C---------CCHHHHHHHHHHHHHHHHHcc
Confidence            578899999988888888777777666655555666554321    11 1         11222221 111112223356


Q ss_pred             CchhhHHHHHHHHHHHHH-HHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHH-HHHHHHhccch
Q 016873           81 FDQVWWLSIVAAIMSFTY-STAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQAL-GAIAFAYSFSI  158 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~~~-~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-g~i~faf~~~~  158 (381)
                      ++..+.++.+-....+.. ..+.......+        ...++.  .|      . ...+..+...+. ....++|++..
T Consensus       134 i~~i~r~~~i~~~~~i~~~~~il~~~~~~~--------~~~~~l--~P------~-~~~g~~~~~~~~~~~~~~~f~g~~  196 (359)
T TIGR00912       134 IEVLLRTAEILLIIFLILFILVLILLAPKL--------GNIKNL--LP------V-LENGLSPILKGAYPVVTFAFGEIE  196 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccHHHc--cC------c-cccCcHHHHhhhhHHhhhhhHHHH
Confidence            777776665443322221 01111111110        111111  01      0 111222333333 46788999888


Q ss_pred             hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCC
Q 016873          159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP  208 (381)
Q Consensus       159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~  208 (381)
                      .......+++||    |+.+|+...+..+...+|..+-+..-..+|.+..
T Consensus       197 i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~  242 (359)
T TIGR00912       197 IFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVT  242 (359)
T ss_pred             HHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHh
Confidence            888888899987    5799999999999999999888887888886443

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.90  E-value=0.0042  Score=63.09  Aligned_cols=64  Identities=23%  Similarity=0.228  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD  205 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~  205 (381)
                      ++.+++.++...+++|.|-......-+|.|||+   |+.+|+...++....++|.......=...|.
T Consensus       198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             chhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence            456788999999999999999999999999994   8999999999999999998877655455553

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=96.88  E-value=0.11  Score=52.35  Aligned_cols=190  Identities=16%  Similarity=0.134  Sum_probs=99.3

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCc--hhhHHHHHHHHHhhcCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSN--GYMITFGIIEVLFSQIP   79 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~ii~~~v~~pl~~l~   79 (381)
                      -+.|..||++|..+..++..+..+|=...-.+..|+.+..+++... +...+.++ +++..  ...+++.++.+++..+.
T Consensus        80 v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~-~~~~~~~~-~~t~~~~~~~~i~~~l~~~~~~~~  157 (442)
T TIGR00800        80 VLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIF-PGYLHLGN-GMTTLELICFIIFWALVLVFLFFF  157 (442)
T ss_pred             hhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc-ccccccCC-cccHHHHHHHHHHHHHHHHHHHcC
Confidence            4678999999999999999999999999999999999988876521 10000000 01111  12233445555554444


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHH-HHhccch
Q 016873           80 DFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIA-FAYSFSI  158 (381)
Q Consensus        80 ~l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~-faf~~~~  158 (381)
                      -.+-.......+....+....+.+ ....+....    .+..+.  .+     +.+...+.+.+..++...+ +.-....
T Consensus       158 g~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~g~----~~~~~~--~~-----~~~~~~~~~~f~~~~~~~~g~~~s~~~  225 (442)
T TIGR00800       158 GYKIRHLFEWLAVVPPFAAFGMLI-WALSKAHGK----GPLGEL--TG-----TLHGSTGAWAFLYALSLVIGSFATWAT  225 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCC----CccccC--CC-----CCCcchhHHHHHHHHHHHHHHHHHHHc
Confidence            433333344333322111111111 111111100    000000  00     0011223344444444422 2223345


Q ss_pred             hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc----cCCCCCc
Q 016873          159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA----FGDLAPN  209 (381)
Q Consensus       159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~----fG~~v~~  209 (381)
                      +.+..-+.+|+|    |+-.+....++.........+|..+-..    +|+...+
T Consensus       226 ~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~  276 (442)
T TIGR00800       226 NAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWS  276 (442)
T ss_pred             CchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence            778988999887    3334446667777777777777777655    8765433

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=96.58  E-value=0.31  Score=48.16  Aligned_cols=170  Identities=16%  Similarity=0.211  Sum_probs=96.5

Q ss_pred             hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCc
Q 016873            3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD   82 (381)
Q Consensus         3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~   82 (381)
                      +.|..||++|..+..+...+...|=-..-....|+.++.+.+.. ++.        .+...+.++++++..+.+.. -.+
T Consensus        63 ~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~-~~~--------~~~~~~~~i~~~l~~~~~~~-G~~  132 (386)
T TIGR02358        63 SLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL-FGE--------ESPMLWILIVGILVTLWLLS-GPL  132 (386)
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--------CchHHHHHHHHHHHHHHHHH-HHH
Confidence            57899999999999999999999999999999999999987641 110        11223444555555555543 356


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHH-HHhccchhhH
Q 016873           83 QVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIA-FAYSFSIILL  161 (381)
Q Consensus        83 ~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~-faf~~~~~~~  161 (381)
                      .++++..++........+...+....+.  +.   .+..    .+      . ...++   ..++...+ +.-......+
T Consensus       133 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~--~~---~~~~----~~------~-~~~s~---~~~~~~~~~~~~swa~~~~  193 (386)
T TIGR02358       133 AFVWLNNWSVWLLLIATLWLLVVVFSKA--DL---SELW----NR------A-GDMSF---AVAVELVIAMPLSWLPLIA  193 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ch---hhhc----CC------C-CCccH---HHHHHHHHHHHHHHHHHcc
Confidence            6666665554433222211111112211  00   0000    00      0 11111   22222111 1012234467


Q ss_pred             HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873          162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD  205 (381)
Q Consensus       162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~  205 (381)
                      ...+-.|+|    |+..+....+..+...+...+|...-.+.|+
T Consensus       194 DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~  233 (386)
T TIGR02358       194 DYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ  233 (386)
T ss_pred             chhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            777777776    5566667777777888888888877666665

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=96.57  E-value=0.33  Score=48.51  Aligned_cols=172  Identities=17%  Similarity=0.200  Sum_probs=95.8

Q ss_pred             ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcC--
Q 016873            1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI--   78 (381)
Q Consensus         1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l--   78 (381)
                      |.++|..||++|.++.++.+.+.+.|-...-.+..|+.   ..+   .      +  ..+...+.++.++++...+.+  
T Consensus        84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~------~--~~~~~~~ili~g~l~~l~~ifG~  149 (442)
T COG1457          84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA---IGS---G------T--GLPVWAGILIIGVLMTLVTIFGY  149 (442)
T ss_pred             heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc---ccc---C------C--CCcHHHHHHHHHHHHHHHHHHhH
Confidence            46789999999999999999999999999999999986   111   1      1  223345666677666555543  


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHH-HHHHHHHHHHhccc
Q 016873           79 PDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRS-LQALGAIAFAYSFS  157 (381)
Q Consensus        79 ~~l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~g~i~faf~~~  157 (381)
                      |-++.+...+....+..+.+   .+...+...       +..... +.+     .++.+.++... ..+++-.   -...
T Consensus       150 r~l~~l~~~a~~~~~~lf~~---l~~~~~~~~-------~~~~~~-~~~-----~~~~~~~fl~a~slv~g~~---~sw~  210 (442)
T COG1457         150 RALHKLERIAVPLLLLLFLY---LLALLFRSK-------GGLDAL-WVK-----GPTSPLSFLSALSLVIGSF---ASWG  210 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHhcc-------ccccee-ecc-----CCCcchhHHHHHHHHHHHH---Hhhh
Confidence            34555554443333222221   111111100       111100 000     01122222111 1222221   1344


Q ss_pred             hhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCC
Q 016873          158 IILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA  207 (381)
Q Consensus       158 ~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v  207 (381)
                      +.....-+-+|+|+|  ++.-.....+.......-+..|...-.+=|+.-
T Consensus       211 ~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~  258 (442)
T COG1457         211 PYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD  258 (442)
T ss_pred             hhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            667788888988732  234444555566667777788888888888766

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.45  E-value=0.023  Score=54.54  Aligned_cols=172  Identities=13%  Similarity=0.083  Sum_probs=103.8

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHH-HHHHHHHhhcCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMIT-FGIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii-~~~v~~pl~~l~~   80 (381)
                      |..++.+|||...+..+...++.+......+-..+|.++...-    + +         ...|.+. ..++..--.-.+.
T Consensus        66 ~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p-~---------TP~~~i~~~~ll~~~y~a~~G  131 (320)
T PF03845_consen   66 EISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----P-E---------TPIWVIILLFLLVAAYAARKG  131 (320)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-c---------CCHHHHHHHHHHHHHHHHhcC
Confidence            6788999999888888888888888877777777777765421    1 1         1122222 2222222223467


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873           81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL  160 (381)
Q Consensus        81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~  160 (381)
                      ++.++-.+-+-....+.....+......        +.+.++..         +-...+..+.+.+.-...+.|++-...
T Consensus       132 ~e~i~R~~~~~~~~~~i~~~~i~~~~~~--------~~~~~~l~---------P~~~~g~~~i~~~~~~~~~~~~~~~~~  194 (320)
T PF03845_consen  132 IEVIARVAEILFPIFLILLLLILLLSIP--------NIDWDNLL---------PVLESGIKPILKGSLVISFPFGGIEIL  194 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCCHHHee---------CcccCChHHHHHHHHHHHHHHHHHHHH
Confidence            7777764433222222111111111111        11112111         112333445666677778888888888


Q ss_pred             HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCC
Q 016873          161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP  208 (381)
Q Consensus       161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~  208 (381)
                      .-+...+++|    |+..|....+..+...+|...-+..-..||.+..
T Consensus       195 l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~  238 (320)
T PF03845_consen  195 LFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPELA  238 (320)
T ss_pred             HHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            8888899987    5678999999999888888887777888886543

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK11375 allantoin permease; Provisional

Probab=96.30  E-value=0.92  Score=46.29  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             hhhhhcCCCcceeehHhHH-HHHHhHHHHHHHhhhhhHHHHHhh
Q 016873            3 AVKANLGGKKVIFCGLIQY-LNLFGVAIGYTIAASVSMMAIKRS   45 (381)
Q Consensus         3 l~~~~~G~~~~~~v~~~~~-i~~~g~~i~ylI~~g~~l~~l~~~   45 (381)
                      +.|..||++|..+..+... +..+|=...-..+.|+.+..+++.
T Consensus        94 ~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~  137 (484)
T PRK11375         94 ILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK  137 (484)
T ss_pred             hHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999888888884 577777777788889988877654

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.75  E-value=0.44  Score=49.28  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh-hccccCCC--CCcccccccC
Q 016873          140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM-GYAAFGDL--APNNLLTGFG  216 (381)
Q Consensus       140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~-GY~~fG~~--v~~~Il~n~~  216 (381)
                      +.++..++-+..|+|.|.-.+-.--+|-|||+   |+.++++..++..+..+|....+. |-+.=-++  ..++....-|
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp  307 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP  307 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence            56778899999999999999999999999994   999999999999999999988763 33332222  2222211111


Q ss_pred             CC---CchhHH---HHHHHHHHHHHHHhhheeccchHHHHHHH
Q 016873          217 FY---NPYWLI---DIANAAIVVHLVGAYQVFCQPLFAFVEKW  253 (381)
Q Consensus       217 ~~---~~~~~~---~~~~~~~~i~~~~s~~l~~~p~~~~ie~~  253 (381)
                      ..   ++.+..   .+.+++.++.+..+---.+++.-+.+..+
T Consensus       308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am  350 (554)
T KOG1286|consen  308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL  350 (554)
T ss_pred             HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence            10   112222   25566666666665544455555555554

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.03  E-value=2.6  Score=42.94  Aligned_cols=66  Identities=11%  Similarity=-0.015  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCC
Q 016873          139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA  207 (381)
Q Consensus       139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v  207 (381)
                      +.|.+..++-.-.....|--.-..+-+|-||++   |+-+|+...+..+..++=.++-+.-...-+++.
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~  315 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL  315 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            566777777777777778888889999999984   778999888887777666555554445556433

>TIGR02119 panF sodium/pantothenate symporter

Probab=94.64  E-value=5.7  Score=40.23  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=52.7

Q ss_pred             hhhhhhcCCC-cceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            2 DAVKANLGGK-KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G~~-~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      |.-++-||++ .|.+..++.++.+++..++-+...|..++.+++.              +...-+++.+++....+.+.-
T Consensus       111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~~GG  176 (471)
T TIGR02119       111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------------SYLTALFIFSSSVLIYTTFGG  176 (471)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhh
Confidence            5567778854 5677788888888887777777778877777531              112224445556667777888


Q ss_pred             CchhhHHHHHHHH
Q 016873           81 FDQVWWLSIVAAI   93 (381)
Q Consensus        81 l~~l~~~S~i~~~   93 (381)
                      ++...++..+=.+
T Consensus       177 ~~av~~td~iQ~~  189 (471)
T TIGR02119       177 FRAVALTDAIQGI  189 (471)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888765443

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>PRK11017 codB cytosine permease; Provisional

Probab=93.61  E-value=2.5  Score=42.01  Aligned_cols=74  Identities=11%  Similarity=0.036  Sum_probs=46.9

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      -+.|..||++|..+..+...+...|=...-..+.++.++++...              +...+.++++++..+.+.+. .
T Consensus        75 v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--------------~~~~~~~i~~~l~~~~~~~G-~  139 (404)
T PRK11017         75 LLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--------------DINLLIVLSGLLMTVTAYFG-I  139 (404)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHHH-H
Confidence            36789999999999999888888877777666677766654321              11224555666666655443 3


Q ss_pred             chhhHHHHH
Q 016873           82 DQVWWLSIV   90 (381)
Q Consensus        82 ~~l~~~S~i   90 (381)
                      +.++.+.-+
T Consensus       140 ~~i~~~~~~  148 (404)
T PRK11017        140 SALTILSRI  148 (404)
T ss_pred             HHHHHHHHH
Confidence            344444433

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=93.39  E-value=4.6  Score=38.67  Aligned_cols=43  Identities=19%  Similarity=0.133  Sum_probs=37.2

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHh
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKR   44 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~   44 (381)
                      |+-+.++||+...+.+..++..++++|+.-+=-.|.++++.++
T Consensus        70 ~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~  112 (349)
T COG3949          70 EILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG  112 (349)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence            6778899999888889999999999999988888878887643

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=93.12  E-value=11  Score=38.29  Aligned_cols=78  Identities=18%  Similarity=0.246  Sum_probs=48.7

Q ss_pred             hhhhhhcCCC-cceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            2 DAVKANLGGK-KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G~~-~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      |.-++-||+. .+.+..+..++..++...+-+...|..++.+++.              +...-+++.+++....+.+.-
T Consensus       112 e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~~GG  177 (483)
T PRK09442        112 DMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI--------------SYETGLLIFGITVALYTAFGG  177 (483)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHhcc
Confidence            5556667754 4556666666666666666667777777776431              112234445566677778888


Q ss_pred             CchhhHHHHHHHH
Q 016873           81 FDQVWWLSIVAAI   93 (381)
Q Consensus        81 l~~l~~~S~i~~~   93 (381)
                      ++...++-.+=.+
T Consensus       178 l~av~~TD~iQ~~  190 (483)
T PRK09442        178 FRAVVLTDALQGI  190 (483)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887765433

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=92.84  E-value=13  Score=38.16  Aligned_cols=247  Identities=16%  Similarity=0.116  Sum_probs=125.7

Q ss_pred             cCchhhHHHHHHHHHhh--cCCCCchhh-HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcc-c
Q 016873           60 SSNGYMITFGIIEVLFS--QIPDFDQVW-WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTV-T  135 (381)
Q Consensus        60 ~~~~~~ii~~~v~~pl~--~l~~l~~l~-~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  135 (381)
                      +...|..++.++++.+-  -.|-+.+.- |+|.+=++..+.+.++.++..+ .+..+   ++.. +.++     |+++ .
T Consensus       159 ~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~-Gg~~~---~~~i-g~~y-----w~~pg~  228 (541)
T COG0833         159 PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIIC-GGGPT---HGYI-GFNY-----WHDPGA  228 (541)
T ss_pred             ChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhc-CCCCC---CCCc-ceee-----ecCCCC
Confidence            34467777666555444  345555555 6666666555554444333322 22221   1111 1111     1111 2


Q ss_pred             chhhHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhh-hhccccCCCC------C
Q 016873          136 GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC-MGYAAFGDLA------P  208 (381)
Q Consensus       136 ~~~~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~-~GY~~fG~~v------~  208 (381)
                      ....+.++...+-+..|||+|..++----.|=+||+   |..+|+..-...=+.+.|...-+ .|-+.-.++-      .
T Consensus       229 F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~  305 (541)
T COG0833         229 FAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSS  305 (541)
T ss_pred             CCcchHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCc
Confidence            344466778889999999999999988889999994   88999988888777777755432 2332222220      0


Q ss_pred             cccccc-----cCCCCchhHHHHHHHHHHHHHHHhhheeccchHHHHHHHHhccC-CCC-ccCcccccccCCCccccccc
Q 016873          209 NNLLTG-----FGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKW-PKS-DLVTAEYEIPIPFWGVYQLN  281 (381)
Q Consensus       209 ~~Il~n-----~~~~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~-~~~-~~~~~~~~~~~p~~~~~~~~  281 (381)
                      +++-.+     +....-..+..+.|+.++..++.+--=.++-..+.+..+-+..+ |+- ...|++   ..|        
T Consensus       306 ~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~---GvP--------  374 (541)
T COG0833         306 SGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRR---GVP--------  374 (541)
T ss_pred             CCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCC---CCc--------
Confidence            111111     10001123345667776666655532223334445544432211 110 001111   112        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHccc---hHHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q 016873          282 LFRLVWRTLFVVLTTLISMLLPF---FNDVVGILGAMGFWPLTVYFPIEMYKAQK  333 (381)
Q Consensus       282 ~~r~~~r~~~v~~~~~iA~~iP~---f~~vl~LvGa~~~~~l~fi~P~l~~lkl~  333 (381)
                      ..-+++..++-+++++-+.. ..   ++-++++.|-.+  .++-+.=++.|++.|
T Consensus       375 ~~al~vt~~fg~lafl~~~~-~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR  426 (541)
T COG0833         375 LVALLVTLLFGLLAFLNSSF-KETTVFNWLLNISGLSG--FIAWGSICLSHIRFR  426 (541)
T ss_pred             hHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            23344555555555554444 43   777888877654  334444467777654

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=92.68  E-value=9.7  Score=38.96  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=55.1

Q ss_pred             hhhhhhcC-CCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            2 DAVKANLG-GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G-~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      |.-++=|| ++.|.+..++.++..++-+..-++.+|+.++.....              +...-+++.+.++..-+.+--
T Consensus       109 d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi--------------~~~~~~~~~~~~v~~Yt~~gG  174 (493)
T COG0591         109 DFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGI--------------SYVTGILIGALIVALYTFLGG  174 (493)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--------------CHHHHHHHHHHHHHHHHHHcC
Confidence            56677799 889999999999999999999999999988655431              111112334455666667777


Q ss_pred             CchhhHHHHHH
Q 016873           81 FDQVWWLSIVA   91 (381)
Q Consensus        81 l~~l~~~S~i~   91 (381)
                      +++..|+..+=
T Consensus       175 ~~av~~Td~iq  185 (493)
T COG0591         175 LRAVVWTDFIQ  185 (493)
T ss_pred             hhHHHHHHHHH
Confidence            88888877643

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=91.99  E-value=1.4  Score=43.65  Aligned_cols=79  Identities=11%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             hhhhhhcCCCc--ceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCC
Q 016873            2 DAVKANLGGKK--VIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIP   79 (381)
Q Consensus         2 dl~~~~~G~~~--~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~   79 (381)
                      |.-++-||+..  |.+..+..++..+......+...|..++.+++.              +....+++.+++.+..+.+-
T Consensus        73 e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi--------------~~~~~~~i~~~i~~iYt~~G  138 (406)
T PF00474_consen   73 EYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI--------------PYNTAILIVGVIVIIYTFFG  138 (406)
T ss_dssp             HHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT
T ss_pred             hhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccch--------------hhhHHHHHHHHHHHHhhhhh
Confidence            56677888888  666566666667777777777788877766431              11233444556666677777


Q ss_pred             CCchhhHHHHHHHHH
Q 016873           80 DFDQVWWLSIVAAIM   94 (381)
Q Consensus        80 ~l~~l~~~S~i~~~~   94 (381)
                      =++...+...+=.+.
T Consensus       139 Gl~av~~td~iQ~~i  153 (406)
T PF00474_consen  139 GLRAVAWTDFIQGVI  153 (406)
T ss_dssp             ------SHHHHHHHH
T ss_pred             hHhhhhHHHHHHHHH
Confidence            788888777655443

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>TIGR00813 sss transporter, SSS family

Probab=90.04  E-value=21  Score=35.29  Aligned_cols=79  Identities=14%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             hhhhhhcCC-CcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            2 DAVKANLGG-KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G~-~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      |.-++-||+ ..|.+..+..++.++.....-+...|..++.+++-              +...-+++.+++++..+.+--
T Consensus        70 e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi--------------~~~~~~ii~~~i~~~Yt~~GG  135 (407)
T TIGR00813        70 EYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL--------------DLYLSLLLLGAITILYTVFGG  135 (407)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------hHHHHHHHHHHHHHHHHHHcc
Confidence            556677887 47777778888888888888888888888877531              112224445556666677777


Q ss_pred             CchhhHHHHHHHHH
Q 016873           81 FDQVWWLSIVAAIM   94 (381)
Q Consensus        81 l~~l~~~S~i~~~~   94 (381)
                      ++...+.-.+=.+.
T Consensus       136 ~~av~~Td~iQ~~i  149 (407)
T TIGR00813       136 LKAVVWTDTIQAVI  149 (407)
T ss_pred             hHHHHHHHHHHHHH
Confidence            88888877665443

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PRK12488 acetate permease; Provisional

Probab=87.18  E-value=40  Score=34.97  Aligned_cols=78  Identities=14%  Similarity=0.173  Sum_probs=51.8

Q ss_pred             hhhhhcC-CCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            3 AVKANLG-GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         3 l~~~~~G-~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      .-++=|| |+.|.+..+..++.++....+-++..|..++.++..              +...-+++.++++..-+.+-=+
T Consensus       135 ~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi--------------~~~~~iii~~~i~~~Yt~~GGm  200 (549)
T PRK12488        135 VVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI--------------SYLYAVVIVGALMVLYVTFGGM  200 (549)
T ss_pred             HHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHhccch
Confidence            3344566 568888888888887777777777788887777431              1112244455666667777888


Q ss_pred             chhhHHHHHHHHH
Q 016873           82 DQVWWLSIVAAIM   94 (381)
Q Consensus        82 ~~l~~~S~i~~~~   94 (381)
                      +...|+..+=.+.
T Consensus       201 ~av~~td~iQ~~i  213 (549)
T PRK12488        201 LATTWVQIIKAVL  213 (549)
T ss_pred             hHHHHHHHHHHHH
Confidence            8888888765433

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=86.10  E-value=2.3  Score=41.93  Aligned_cols=73  Identities=21%  Similarity=0.313  Sum_probs=53.8

Q ss_pred             hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF   81 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l   81 (381)
                      |+++..||++|+.+..+...+.|+++|++.+...+|-++++.+             ..+.+.|.++++++...++.. .+
T Consensus       259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia~~-Gl  324 (378)
T TIGR00796       259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVANL-GL  324 (378)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHHHh-CH
Confidence            6789999999999999999999999999999999888777632             123345666666555554432 45


Q ss_pred             chhhHHH
Q 016873           82 DQVWWLS   88 (381)
Q Consensus        82 ~~l~~~S   88 (381)
                      +++--.|
T Consensus       325 ~~Ii~~~  331 (378)
T TIGR00796       325 TQIISIS  331 (378)
T ss_pred             HHHHHHH
Confidence            5554444

transmembrane helical spanners.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.87
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.46
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.43
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	96.73
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	90.47

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.87  E-value=4.3e-08  Score=96.62  Aligned_cols=177  Identities=11%  Similarity=0.049  Sum_probs=99.5

Q ss_pred             hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCc
Q 016873            3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD   82 (381)
Q Consensus         3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~   82 (381)
                      ..++.+||+...++.+...+.....+.++....++.++...+.  .   .  +  ++....+.++...++..+ -.+..+
T Consensus        76 ~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~--~--~~~~~~~~~~~~~~~~~i-n~~g~~  145 (445)
T 3l1l_A           76 YARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI--L---K--D--PWVLTITCVVVLWIFVLL-NIVGPK  145 (445)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG--G---G--S--HHHHHHHHHHHHHHHHHH-HHHCHH
T ss_pred             hHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc--c---c--c--cHHHHHHHHHHHHHHHHH-HHhchH
Confidence            4678899999899999888887777777777777655543221  0   0  0  111111111111111111 223455


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhHH
Q 016873           83 QVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLE  162 (381)
Q Consensus        83 ~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~~  162 (381)
                      ..+.+..+.....+...++.++..+...  ++  +.-.++  +.       .....+..++..++...+|+|.|......
T Consensus       146 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~--~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~af~G~e~~~~  212 (445)
T 3l1l_A          146 MITRVQAVATVLALIPIVGIAVFGWFWF--RG--ETYMAA--WN-------VSGLGTFGAIQSTLNVTLWSFIGVESASV  212 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTC--CC--CCCCCC--------------------HHHHHHHHHHTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh--Ch--hhcccc--cC-------ccCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            5555543333322221111222222111  10  000011  11       11122345678889999999999999999


Q ss_pred             HHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873          163 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD  205 (381)
Q Consensus       163 i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~  205 (381)
                      ..+|+|||+   |+.+|+...+..++.++|....+......+.
T Consensus       213 ~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          213 AAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             GGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            999999994   8899999999999999999988776666654

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.46  E-value=8.3e-06  Score=80.16  Aligned_cols=65  Identities=14%  Similarity=0.190  Sum_probs=54.8

Q ss_pred             hhhHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccC
Q 016873          137 TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG  204 (381)
Q Consensus       137 ~~~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG  204 (381)
                      +.++.+++.++...+|+|.|........+|+|||+   |+.+|+...+..++.++|....+......+
T Consensus       184 ~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          184 PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            33445778889999999999999999999999994   789999999999999999988776554444

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.43  E-value=1.7e-05  Score=79.43  Aligned_cols=59  Identities=10%  Similarity=0.032  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCC
Q 016873          145 QALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL  206 (381)
Q Consensus       145 ~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~  206 (381)
                      .++...+|+|.|.......-+|+|||+   |+.+|++..++.++.++|....+.-....+++
T Consensus       205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          205 VVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            456778999999999999999999994   88999999999999999999887766666653

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=96.73  E-value=0.043  Score=54.70  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      +++.|..||++|..+..+...+.++|-...-....|+.+..+++.. ++.       . +.....++++++.++.++ .-
T Consensus        91 ~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~-~g~-------~-~~~v~~~i~~~l~~~~~~-~G  160 (501)
T 2jln_A           91 TVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLL-TGF-------T-NLPLWIVIFGAIQVVTTF-YG  160 (501)
T ss_dssp             HHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-------C-CHHHHHHHHHHHHHHHHT-TH
T ss_pred             hhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCc-------c-hHHHHHHHHHHHHHHHHH-hC
Confidence            3678999999999999999999999999988899999998886531 110       0 012345556666677764 44


Q ss_pred             CchhhHHHHHHHHH
Q 016873           81 FDQVWWLSIVAAIM   94 (381)
Q Consensus        81 l~~l~~~S~i~~~~   94 (381)
                      ++.++.+..++...
T Consensus       161 ~~~i~~~~~~~~p~  174 (501)
T 2jln_A          161 ITFIRWMNVFASPV  174 (501)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            67777766655443

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=90.47  E-value=15  Score=36.46  Aligned_cols=79  Identities=9%  Similarity=0.174  Sum_probs=39.7

Q ss_pred             hhhhhhcCCCcceeehHhHHH-HHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873            2 DAVKANLGGKKVIFCGLIQYL-NLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD   80 (381)
Q Consensus         2 dl~~~~~G~~~~~~v~~~~~i-~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~   80 (381)
                      |.-++-||++.|.+..+..++ +.+....+-+...|..++.++.              ++...-+++.++++..-+.+--
T Consensus        87 e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GG  152 (530)
T 3dh4_A           87 EFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGG  152 (530)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcc
Confidence            455667888877776665443 2333333334445555665532              1112224445566677777778


Q ss_pred             CchhhHHHHHHHHH
Q 016873           81 FDQVWWLSIVAAIM   94 (381)
Q Consensus        81 l~~l~~~S~i~~~~   94 (381)
                      ++...|+-.+=.+.
T Consensus       153 l~aV~~TD~iQ~~i  166 (530)
T 3dh4_A          153 LSAVVWTDVIQVFF  166 (530)
T ss_dssp             ---CCSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            88888877655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00