Citrus Sinensis ID: 016906

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

MVDDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLSHTLPSNSSSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAAGSLTLLFVLS

ccHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEcccEEccccccccccccHHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccEEEEEEEcccccccEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccHHHHcccccHHccccccccccHHHHHHHHcHHHHcccccccHHHHHHccHHHHHHHHHHHHHHHHccc

ccccccHHHHHHHHHHHHHccHHHcEEEEEccccccccccccccccccccccEEcccccccccHcccccccccccEEEEccccEEEEcccccccEEEEccccccEEEccHHHHHHHHHHHHcccccEEEEEEEccccccccccHHccccEEEEEEEEEccccccEEEEEEEcEEEEEEEEEEcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHccccccccHHHHcHHHHHHcccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHccHHccHHHHHHHHcHHHHHHHHHHHHHHHHHcc

MVDDRLLERERQQIEQIRQLDFEElqveevddfhdssddddraatgadssnqltFDTCLASLHTYLGDVEDTHNRMAFleggailtlplfyldgvvlfpeatlplrvikPNFIAAAERALsqvdvpytIGVVRVfrepdngritfatIGTTAEIRQYrrledgslnvVTRGQQRFRLRRrwidvegvpcgeiqiiqedlplrtprdvfetlgcvsnlsqslshtlpsnsssrgygirdndsdatseesfeselspterrIHQSVIDFaygcdimdestssdddksafqsdiqsrrphlndsdsignwkqsenvglrigkssalgrqshrgegskmCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAAGSLTLLFVLS

mvddrllererQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAatgadssnqltFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERalsqvdvpyTIGVVrvfrepdngritfatigttaeirqyrrledgslnvvtrgqqrfrlrrrwidvegvpcgeiqiiqedlplrTPRDVFETLGCVSNlsqslshtlpsnsssrgygIRDNDSDATSEEsfeselspterrihQSVIDFAYGCDIMDESTSSDDDKSAFQSDIqsrrphlndsdsignwkqsenvglrigkssalgrqshrgegskmcwrneLSQFRRTSRAFLPHWVYRMYDSYCLAQRAAGSLTLLFVLS

MVDDrllererqqieqirqlDFEELQVEEVddfhdssddddraatgadssNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTrgqqrfrlrrrWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLsqslshtlpsnsssRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAAGSLTLLFVLS

****************************************************LTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSN********************************************HQSVIDFAYGCDI*************************************************************MCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAAGSLTLLFVL*

*******ERERQQIEQIRQLDFEELQ****************************FDTCLASLHTYLGDVED************ILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFR***NGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSN**********SNSSSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAY*********************************************************************************FLPHWVYRMYDSYCLAQRAAGSLTLLFVLS

MVDDRLLERERQQIEQIRQLDFEELQVEE*****************ADSSNQLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLS***************************************RRIHQSVIDFAYGCDIMDE************************SDSIGNWKQSENVGLRIGKSS************KMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAAGSLTLLFVLS

****RLLERERQQIEQIRQLDFEELQVEEVDD*******************QLTFDTCLASLHTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLSHTLPSNSSSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGC************************************************************GSKMCWRNELSQFRRTSRAFLPHWVYRMYDSYCLAQRAAGSLTLLFVLS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		380	2.2.26 [Sep-21-2011]
P0CF65		445	Protein cereblon OS=Gallu	yes	no	0.460	0.393	0.288	5e-10
Q96SW2		442	Protein cereblon OS=Homo	yes	no	0.376	0.323	0.303	6e-09
Q5R6Y2		429	Protein cereblon OS=Pongo	yes	no	0.376	0.333	0.303	6e-09
Q68EH9		431	Protein cereblon OS=Danio	yes	no	0.460	0.406	0.294	9e-09
Q0P564		444	Protein cereblon OS=Bos t	yes	no	0.365	0.313	0.311	3e-08
Q56AP7		445	Protein cereblon OS=Rattu	yes	no	0.376	0.321	0.303	5e-08
Q8C7D2		445	Protein cereblon OS=Mus m	yes	no	0.376	0.321	0.303	6e-08
Q640S2		447	Protein cereblon OS=Xenop	yes	no	0.392	0.333	0.291	9e-08
Q6ML73		793	Lon protease 1 OS=Bdellov	yes	no	0.252	0.121	0.310	3e-05
B8CY71		783	Lon protease OS=Halotherm	yes	no	0.265	0.128	0.343	3e-05

>sp\|P0CF65\|CRBN_CHICK Protein cereblon OS=Gallus gallus GN=CRBN PE=2 SV=1	Back alignment and function desciption

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 19/194 (9%)

Query: 40  DDRAATGADSSNQLTFDTCLASLHTYLG-DVEDTHNRMAFLEGGAILTLPLFYLDGVVLF 98
           +D+    A+  N + FDT L + H YLG D+E+ H R    +  +   +P+     V+L 
Sbjct: 35  EDQDGKEAEKPNMINFDTSLPTSHMYLGSDMEEFHGR-TLHDDDSCQVIPVLPHVMVMLI 93

Query: 99  PEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYR 158
           P  TLPL++  P  ++   R L Q D  + +      RE +      A  GTTAEI  YR
Sbjct: 94  PGQTLPLQLFHPQEVSMV-RNLIQKDRTFAVLAYSNVRERE------AHFGTTAEIYAYR 146

Query: 159 RLEDGSLNVV---TRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVS 215
             ++  +  V     G+QRF++       +G+   ++QI+ E       R +  T+  V 
Sbjct: 147 EEQEYGIETVKVKAIGRQRFKVLEIRTQSDGIQQAKVQILPE-------RVLPSTMSAVQ 199

Query: 216 NLSQSLSHTLPSNS 229
             S S  H  PS+ 
Sbjct: 200 LQSLSRRHIFPSSK 213

Component of some DCX (DDB1-CUL4-X-box) E3 protein ligase complex, a complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins and is required for limb outgrowth and expression of the fibroblast growth factor FGF8. In the complex, may act as a substrate receptor. May also be involved in memory and learning.
Gallus gallus (taxid: 9031)

>sp\|Q96SW2\|CRBN_HUMAN Protein cereblon OS=Homo sapiens GN=CRBN PE=1 SV=1	Back alignment and function description

>sp\|Q5R6Y2\|CRBN_PONAB Protein cereblon OS=Pongo abelii GN=CRBN PE=2 SV=1	Back alignment and function description

>sp\|Q68EH9\|CRBN_DANRE Protein cereblon OS=Danio rerio GN=crbn PE=1 SV=1	Back alignment and function description

>sp\|Q0P564\|CRBN_BOVIN Protein cereblon OS=Bos taurus GN=CRBN PE=2 SV=1	Back alignment and function description

>sp\|Q56AP7\|CRBN_RAT Protein cereblon OS=Rattus norvegicus GN=Crbn PE=1 SV=1	Back alignment and function description

>sp\|Q8C7D2\|CRBN_MOUSE Protein cereblon OS=Mus musculus GN=Crbn PE=2 SV=1	Back alignment and function description

>sp\|Q640S2\|CRBN_XENTR Protein cereblon OS=Xenopus tropicalis GN=crbn PE=2 SV=1	Back alignment and function description

>sp\|Q6ML73\|LON1_BDEBA Lon protease 1 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=lon1 PE=3 SV=1	Back alignment and function description

>sp\|B8CY71\|LON_HALOH Lon protease OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=lon PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		380
224141713		542	predicted protein [Populus trichocarpa]	0.960	0.673	0.684	1e-136
255550958		550	ATP-dependent peptidase, putative [Ricin	0.965	0.667	0.631	1e-119
224088992		549	predicted protein [Populus trichocarpa]	0.926	0.641	0.599	1e-118
359475968		543	PREDICTED: protein cereblon-like [Vitis	0.963	0.674	0.632	1e-117
296081564		548	unnamed protein product [Vitis vinifera]	0.971	0.673	0.624	1e-115
357436307		556	Protein cereblon [Medicago truncatula] g	0.921	0.629	0.603	1e-107
449461333		546	PREDICTED: protein cereblon-like [Cucumi	0.955	0.664	0.576	1e-107
449515456		546	PREDICTED: LOW QUALITY PROTEIN: protein	0.955	0.664	0.576	1e-107
297821997		542	ATP-dependent protease La domain-contain	0.936	0.656	0.528	5e-97
18377847		547	At2g5740/F3N11.19 [Arabidopsis thaliana]	0.942	0.654	0.519	2e-94

>gi\|224141713\|ref\|XP_002324209.1\| predicted protein [Populus trichocarpa] gi\|222865643\|gb\|EEF02774.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/374 (68%), Positives = 300/374 (80%), Gaps = 9/374 (2%)

Query: 3   DDRLLERERQQIEQIRQLDFEELQVEEVDDFHDSSDDDDRAATGADSSNQLTFDTCLASL 62
           DDR+LE ER QIEQIRQLDFEELQVEEVDD    S  DDR A+GA SS+  TF+TCLASL
Sbjct: 4   DDRILEAERHQIEQIRQLDFEELQVEEVDDDDSDSSLDDRDASGAGSSDDFTFNTCLASL 63

Query: 63  HTYLGDVEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQ 122
           HTYLG+VEDTH+R+AFL+GGAIL LPLFYL+GVVLFPEATLPLRVI+PNFI+A ERAL Q
Sbjct: 64  HTYLGEVEDTHHRLAFLDGGAILNLPLFYLEGVVLFPEATLPLRVIQPNFISAVERALVQ 123

Query: 123 VDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWI 182
           VD PYT+GVVR +R+ DN R+ FAT+GTTAEIRQYRRLEDGSLNVVTRGQQRFRL+RRWI
Sbjct: 124 VDAPYTVGVVRAYRDSDNRRLRFATVGTTAEIRQYRRLEDGSLNVVTRGQQRFRLKRRWI 183

Query: 183 DVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNL-SQSLSHTLPSNSSSRGYGIRDNDS 241
           DVEGVPCGE+QIIQED+PLRTP+D F  L  +SNL S   S  LPS  SS GYG  DNDS
Sbjct: 184 DVEGVPCGEVQIIQEDMPLRTPKDAFGKLAPLSNLRSHKFSSVLPSTFSSVGYGHSDNDS 243

Query: 242 DATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQS-DIQSRRPHLND 300
           +A SEESFE+ELS  ERRIHQS ++  YG D+MDES SSDDDK   +S +++SRR HL++
Sbjct: 244 EANSEESFETELSLAERRIHQSALNSCYGYDMMDESMSSDDDKFMSRSEEMRSRRSHLSE 303

Query: 301 SDSIGNWKQSENVG---LRIGKSSALGRQSHRGEGSKMCWRN-ELSQFRRTSRAFLPHWV 356
           ++        +N+G   L IG SS L +   +GEGSK CW+N +L+QFRR  R F P+WV
Sbjct: 304 TEGSLYLDTGKNLGNTTLEIGNSSGLVK---KGEGSKRCWKNTDLNQFRRVPRTFWPYWV 360

Query: 357 YRMYDSYCLAQRAA 370
           Y MYDSYCLA++AA
Sbjct: 361 YSMYDSYCLAEKAA 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255550958\|ref\|XP_002516527.1\| ATP-dependent peptidase, putative [Ricinus communis] gi\|223544347\|gb\|EEF45868.1\| ATP-dependent peptidase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224088992\|ref\|XP_002308593.1\| predicted protein [Populus trichocarpa] gi\|222854569\|gb\|EEE92116.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359475968\|ref\|XP_002277719.2\| PREDICTED: protein cereblon-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296081564\|emb\|CBI20569.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357436307\|ref\|XP_003588429.1\| Protein cereblon [Medicago truncatula] gi\|355477477\|gb\|AES58680.1\| Protein cereblon [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449461333\|ref\|XP_004148396.1\| PREDICTED: protein cereblon-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449515456\|ref\|XP_004164765.1\| PREDICTED: LOW QUALITY PROTEIN: protein cereblon-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297821997\|ref\|XP_002878881.1\| ATP-dependent protease La domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297324720\|gb\|EFH55140.1\| ATP-dependent protease La domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18377847\|gb\|AAL67110.1\| At2g5740/F3N11.19 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		380
TAIR\|locus:2043500		547	AT2G25740 [Arabidopsis thalian	0.886	0.616	0.459	9.6e-73
ZFIN\|ZDB-GENE-040822-43		446	crbn "cereblon" [Danio rerio (	0.289	0.246	0.322	4.2e-08
UNIPROTKB\|F1SFL6		387	CRBN "Uncharacterized protein"	0.289	0.284	0.319	1.2e-06
UNIPROTKB\|J3QT87		394	CRBN "Protein cereblon" [Homo	0.289	0.279	0.319	1.3e-06
UNIPROTKB\|Q5R6Y2		429	CRBN "Protein cereblon" [Pongo	0.289	0.256	0.319	1.4e-06
UNIPROTKB\|Q96SW2		442	CRBN "Protein cereblon" [Homo	0.289	0.248	0.319	1.9e-06
UNIPROTKB\|J3QT51		228	CRBN "Protein cereblon" [Homo	0.289	0.482	0.319	2.7e-06
UNIPROTKB\|Q0P564		444	CRBN "Protein cereblon" [Bos t	0.289	0.247	0.327	4.2e-06
UNIPROTKB\|P0CF65		445	CRBN "Protein cereblon" [Gallu	0.289	0.247	0.319	6.2e-06
RGD\|1310533		445	Crbn "cereblon" [Rattus norveg	0.289	0.247	0.319	1.2e-05

TAIR\|locus:2043500 AT2G25740 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 170/370 (45%), Positives = 224/370 (60%)

Query:    21 DFEELQVEEVXXXXXXXX------------XXXXXXXXXXXXNQLTFDTCLASLHTYLGD 68
             DFEELQVEEV                                ++L F+  LASLH YLG+
Sbjct:    21 DFEELQVEEVDDLHDSDSDDNNDDLSSFPFSSHAQASGNLGDDELMFNPALASLHMYLGE 80

Query:    69 VEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYT 128
             VEDT NR++F++GG +L +PLFYL+GVVLFPEATLPLR+I+P+F+AA ERAL+Q + P T
Sbjct:    81 VEDTQNRVSFVDGGTVLKIPLFYLEGVVLFPEATLPLRIIQPSFLAAVERALNQANAPST 140

Query:   129 IGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLNVVTXXXXXXXXXXXWIDVEGVP 188
             IGV+RV+RE    +  +A++GTTAEIRQYRRL DGS NV+T           W DVEG  
Sbjct:   141 IGVIRVYRE--GAQFKYASVGTTAEIRQYRRLGDGSFNVITRGQQRFRLKHRWTDVEGFT 198

Query:   189 CGEIQIIQEDLPLRTPRDVFETLGCVSNLXXXXXXXXXXXXXXRGYGIRDND--SDATSE 246
             CGE+QI+ ED+PLRTPRD F  L  +S L                  +RD D  S+A SE
Sbjct:   199 CGEVQIVDEDVPLRTPRDAFGKLVPLSKLRGRYPLGTASLSTP----LRDMDAQSEANSE 254

Query:   247 ESFESELSPTERRIHQSVIDFAYGCDIMDESTSSDDDKSAFQSDIQSRRPHLNDSDSIG- 305
             ESFES LSP+E+R+H SV+D  + C+    STSSDDD+    S +QS   +     SIG 
Sbjct:   255 ESFESALSPSEKRLHYSVVDSIF-CN----STSSDDDQVVSTSTVQSSGSNPYSLRSIGC 309

Query:   306 ----NWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRN--ELSQFRRTSRAFLPHWVYRM 359
                 +  ++E+    IGK+  + ++ ++ +     +R   +LS+FR T RAF P W YRM
Sbjct:   310 LASSHDNENEDEQSAIGKTP-VSQEKYQKQNRLASFRQNTDLSRFRMTPRAFWPFWAYRM 368

Query:   360 YDSYCLAQRA 369
             +DSY LAQRA
Sbjct:   369 FDSYYLAQRA 378

GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

ZFIN\|ZDB-GENE-040822-43 crbn "cereblon" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SFL6 CRBN "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|J3QT87 CRBN "Protein cereblon" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R6Y2 CRBN "Protein cereblon" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96SW2 CRBN "Protein cereblon" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|J3QT51 CRBN "Protein cereblon" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0P564 CRBN "Protein cereblon" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P0CF65 CRBN "Protein cereblon" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1310533 Crbn "cereblon" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		380
pfam02190		191	pfam02190, LON, ATP-dependent protease La (LON) do	9e-20
COG2802		221	COG2802, COG2802, Uncharacterized protein, similar	6e-16
COG0466		782	COG0466, Lon, ATP-dependent Lon protease, bacteria	1e-07
TIGR00763		775	TIGR00763, lon, ATP-dependent protease La	0.001

>gnl\|CDD\|216923 pfam02190, LON, ATP-dependent protease La (LON) domain	Back alignment and domain information

 Score = 85.9 bits (213), Expect = 9e-20
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 86  TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITF 145
            LPL  L  VVLFP   LPL V +P +IAA E AL   D P+ + +V     P    +  
Sbjct: 1   ELPLLPLRNVVLFPGMVLPLHVFEPRYIAAIEEALES-DRPFGLVLVSQKDPPSIDDL-- 57

Query: 146 ATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED 198
             +GT A I Q  +L DG L ++  G +RFR+       E     E++ + E+
Sbjct: 58  YEVGTLARIIQIVKLPDGRLKILVEGLERFRI-LELEQEEPYLVAEVEDLPEE 109

This domain has been shown to be part of the PUA superfamily. Length = 191

>gnl\|CDD\|225362 COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|233119 TIGR00763, lon, ATP-dependent protease La	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		380
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	99.94
COG0466		782	Lon ATP-dependent Lon protease, bacterial type [Po	99.94
PF02190		205	LON: ATP-dependent protease La (LON) domain; Inter	99.92
TIGR00763		775	lon ATP-dependent protease La. This protein is ind	99.92
COG2802		221	Uncharacterized protein, similar to the N-terminal	99.83
KOG1400		371	consensus Predicted ATP-dependent protease PIL, co	99.83
smart00464		92	LON Found in ATP-dependent protease La (LON). N-te	98.92
KOG2004		906	consensus Mitochondrial ATP-dependent protease PIM	98.52
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.28

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

Probab=99.94  E-value=1.2e-26  Score=252.43  Aligned_cols=174  Identities=22%  Similarity=0.235  Sum_probs=153.6

Q ss_pred             ceeeEEEEeeCCceecCCCceeeEecChhHHHHHHHHHhcCCCCcEEEEEeeecCCC---CCcCcccCeeEEEEEEEEEE
Q 016906           83 AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRR  159 (380)
Q Consensus        83 ~~~~LPllpLrg~VLFPG~~lpL~V~rprsi~aVe~Am~~dd~~~~IgLv~q~kd~~---p~~~dly~IGTlAeI~qv~r  159 (380)
                      .+.+||+|||+|+|||||+++||+|+++++++||+.|+.++   +.||+|++ ++..   ++.+++|.|||+|+|.++.+
T Consensus         7 ~~~~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~---~~~gvv~~-k~~~~~~p~~~dLy~VGtla~I~~~~~   82 (784)
T PRK10787          7 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQMLK   82 (784)
T ss_pred             CCceEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcC---CEEEEEEe-cCCCCCCCCcccccCccEEEEEEEeeE
Confidence            34689999999999999999999999999999999999887   89999998 5543   45578999999999999999


Q ss_pred             CCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC--------cccccHHHHHHHHHhhcCCCcc--ccccccCC-
Q 016906          160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED--------LPLRTPRDVFETLGCVSNLSQS--LSHTLPSN-  228 (380)
Q Consensus       160 lpdG~lrVlveG~qRfrI~~~~~~~dg~l~AeVeil~E~--------al~r~l~e~f~e~a~l~~~~~~--~~~~~~~~-  228 (380)
                      ++||.++|+++|.+||+|.+ +.+.+||+.|+|+.++++        ++.+.+++.|.+|+.+++..+.  +..+...+ 
T Consensus        83 l~DG~~~Ilv~Gl~RfrI~~-~~~~~py~~A~Ve~l~~~~~~~~e~~al~~~ll~~~~~~~~l~~~~~~e~~~~~~~~dd  161 (784)
T PRK10787         83 LPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDD  161 (784)
T ss_pred             CCCCeEEEEEEEEEEEEEEE-EEcCCCCEEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhcccCCHHHHhhhhcccc
Confidence            99999999999999999998 788999999999999763        2566789999999999887766  33333333 


Q ss_pred             -ccchhhhccCCCCCCccchhhcccCCHHhhhhh
Q 016906          229 -SSSRGYGIRDNDSDATSEESFESELSPTERRIH  261 (380)
Q Consensus       229 -~~l~D~ia~~l~~~~~~kQ~iLe~~dv~eRl~~  261 (380)
                       ..++|.+|++++++.++||+|||+.|+.+|+..
T Consensus       162 p~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~  195 (784)
T PRK10787        162 PARLADTIAAHMPLKLADKQSVLEMSDVNERLEY  195 (784)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHH
Confidence             679999999999999999999999999999964

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>TIGR00763 lon ATP-dependent protease La	Back alignment and domain information

>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]	Back alignment and domain information

>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]	Back alignment and domain information

>smart00464 LON Found in ATP-dependent protease La (LON)	Back alignment and domain information

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		380
1zbo_A		210	Hypothetical protein BPP1347; alpha-beta protein,	1e-16
2ane_A		125	ATP-dependent protease LA; LONN119, LON protease,	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3ljc_A		252	ATP-dependent protease LA; LON N-domain, allosteri	8e-05
3m65_A		209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	5e-04

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10 Length = 210	Back alignment and structure

 Score = 76.8 bits (189), Expect = 1e-16
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 86  TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFR----EPDNG 141
            +PLF L    LFP   L LRV +  ++    R ++        GVV + +       +G
Sbjct: 3   EIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIAD---GSEFGVVVLEQGTEVRRPDG 58

Query: 142 RITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPL 201
           R   A  GT A I  +       L +   G  RFRL        G+  G+ + + +D PL
Sbjct: 59  REVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPL 118

Query: 202 RTPRD 206
             P +
Sbjct: 119 EVPPE 123

PyMOL of 1zbo

>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10 Length = 125	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli} Length = 252	Back alignment and structure

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis} Length = 209	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		380
3m65_A		209	ATP-dependent protease LA 1; coiled-coil, ATP-bind	100.0
3ljc_A		252	ATP-dependent protease LA; LON N-domain, allosteri	100.0
1zbo_A		210	Hypothetical protein BPP1347; alpha-beta protein,	99.98
2ane_A		125	ATP-dependent protease LA; LONN119, LON protease,	99.94

>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}	Back alignment and structure

Probab=100.00  E-value=1.3e-34  Score=266.78  Aligned_cols=174  Identities=20%  Similarity=0.266  Sum_probs=156.4

Q ss_pred             ceeeEEEEeeCCceecCCCceeeEecChhHHHHHHHHHhcCCCCcEEEEEeeecCCC---CCcCcccCeeEEEEEEEEEE
Q 016906           83 AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRR  159 (380)
Q Consensus        83 ~~~~LPllpLrg~VLFPG~~lpL~V~rprsi~aVe~Am~~dd~~~~IgLv~q~kd~~---p~~~dly~IGTlAeI~qv~r  159 (380)
                      .+.+||+|||+|+|+|||+++||+|++++|++||++||+++   +.||+|+| ++++   |+.+++|.|||+|+|.++.+
T Consensus         5 ~~~~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~i~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~~   80 (209)
T 3m65_A            5 LKRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHD---HMIFLATQ-QDISIDEPGEDEIFTVGTYTKIKQMLK   80 (209)
T ss_dssp             EEEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTT---SEEEEEEB-SSTTCSSCCGGGBCSEEEEEEEEEEEE
T ss_pred             CCCceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCcchhhheeEEEEEEEEEE
Confidence            45689999999999999999999999999999999999986   78999998 7654   55689999999999999999


Q ss_pred             CCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC--------cccccHHHHHHHHHhhcCCCcc--ccccccCC-
Q 016906          160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED--------LPLRTPRDVFETLGCVSNLSQS--LSHTLPSN-  228 (380)
Q Consensus       160 lpdG~lrVlveG~qRfrI~~~~~~~dg~l~AeVeil~E~--------al~r~l~e~f~e~a~l~~~~~~--~~~~~~~~-  228 (380)
                      +|||+++|+++|.+||+|.+ +.+.+||+.|+|+.+++.        ++.+.+++.|++|+++++..+.  ...+...+ 
T Consensus        81 l~dG~~~v~v~G~~R~ri~~-~~~~~~~~~a~v~~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~d  159 (209)
T 3m65_A           81 LPNGTIRVLVEGLKRAHIVK-YNEHEDYTSVDIQLIHEDDSKDTEDEALMRTLLDHFDQYIKISKKISAETYAAVTDIEE  159 (209)
T ss_dssp             CTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEECCCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCC
Confidence            99999999999999999998 888999999999999764        3678899999999999887776  33444444 


Q ss_pred             -ccchhhhccCCCCCCccchhhcccCCHHhhhhh
Q 016906          229 -SSSRGYGIRDNDSDATSEESFESELSPTERRIH  261 (380)
Q Consensus       229 -~~l~D~ia~~l~~~~~~kQ~iLe~~dv~eRl~~  261 (380)
                       +.++|.+|++++++.++||++||+.|+.+|+..
T Consensus       160 p~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~  193 (209)
T 3m65_A          160 PGRMADIVASHLPLKLKDKQDILETADVKDRLNK  193 (209)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHH
Confidence             789999999999999999999999999999974

PyMOL of 3m65

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}	Back alignment and structure

>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10	Back alignment and structure

>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		380
d2anea1		110	b.122.1.10 (A:8-117) ATP-dependent protease La (Lo	8e-16
d1zboa1		197	b.122.1.10 (A:2-198) Hypothetical protein BPP1347	1e-09

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 110	Back information, alignment and structure


class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: ATP-dependent protease La (Lon), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 70.9 bits (173), Expect = 8e-16
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 85  LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRIT 144
           + +P+  L  VV++P   +PL V +   I   E A+        +   +     + G   
Sbjct: 2   IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDK-KIMLVAQKEASTDEPGVND 60

Query: 145 FATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQII 195
             T+GT A I Q  +L DG++ V+  G QR R+     D       + + +
Sbjct: 61  LFTVGTVASILQMLKLPDGTVKVLVEGLQRARI-SALSDNGEHFSAKAEYL 110

PyMOL of d2anea1

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]} Length = 197	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		380
d1zboa1		197	Hypothetical protein BPP1347 {Bordetella parapertu	99.96
d2anea1		110	ATP-dependent protease La (Lon), N-terminal domain	99.92

>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}	Back information, alignment and structure

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]

Probab=99.96  E-value=2.1e-29  Score=223.03  Aligned_cols=171  Identities=20%  Similarity=0.260  Sum_probs=138.5

Q ss_pred             eEEEEeeCCceecCCCceeeEecChhHHHHHHHHHhcCCCCcEEEEEeeecCCC----CCcCcccCeeEEEEEEEEEECC
Q 016906           86 TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD----NGRITFATIGTTAEIRQYRRLE  161 (380)
Q Consensus        86 ~LPllpLrg~VLFPG~~lpL~V~rprsi~aVe~Am~~dd~~~~IgLv~q~kd~~----p~~~dly~IGTlAeI~qv~rlp  161 (380)
                      .||||||+ +|+|||+++||+|++|+|++|+++|++++   +.++++...+...    ++.+++|+|||+|+|.++.+++
T Consensus         2 elPlfpL~-~VlfP~~~~PL~Ife~ry~~~i~~~l~~~---~~~~~v~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~   77 (197)
T d1zboa1           2 EIPLFPLS-NALFPAGVLRLRVFEIRYLDMVRRCIADG---SEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPM   77 (197)
T ss_dssp             EEEEEEES-SCCCTTBEEEEEECSTTTHHHHHHHHHTT---CCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSS
T ss_pred             CCCEEeCC-CccCCCcceeeEeCchHHHHHHHHHHhcC---CCeeeeccccccccccccccccccceeEEEEEeeecccC
Confidence            59999995 99999999999999999999999999987   6677666523222    3567899999999999999999


Q ss_pred             CCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCCc----------ccccHHHHHHHHHhhcCCCcc--ccccccCC-
Q 016906          162 DGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL----------PLRTPRDVFETLGCVSNLSQS--LSHTLPSN-  228 (380)
Q Consensus       162 dG~lrVlveG~qRfrI~~~~~~~dg~l~AeVeil~E~a----------l~r~l~e~f~e~a~l~~~~~~--~~~~~~~~-  228 (380)
                      ||+++|+++|.+||+|.+.....++|+.|+++++++..          +...+.+.+.++.........  .......+ 
T Consensus        78 dG~~~i~v~G~~R~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
T d1zboa1          78 PALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDD  157 (197)
T ss_dssp             TTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCTTC
T ss_pred             CCceeEeeeeccceeeeeeeeccCceEEEEEEeccccCCccCcHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhccCC
Confidence            99999999999999999833445789999999987531          345566777777776665544  23333333 


Q ss_pred             -ccchhhhccCCCCCCccchhhcccCCHHhhhhh
Q 016906          229 -SSSRGYGIRDNDSDATSEESFESELSPTERRIH  261 (380)
Q Consensus       229 -~~l~D~ia~~l~~~~~~kQ~iLe~~dv~eRl~~  261 (380)
                       ..++|.+|++++++..+||++||. +..+|+..
T Consensus       158 ~~~l~~~la~~l~l~~~~kQ~lLE~-~~~~RL~~  190 (197)
T d1zboa1         158 CGWVADRWAEMLSLPPADKARLLLL-PPLDRLRE  190 (197)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCC-CHHHHHHH
Confidence             679999999999999999999985 77899865

PyMOL of d1zboa1

>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure