Citrus Sinensis ID: 016941

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MEFQKSLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSLGLLGVSLVLGLVSGIIFVGV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccEEEEEEcccccccccccccHHHHHcccccccccEEEEEEccccccEEEEcHHHHcccccccccccccccccEEEccccccEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHccEEEEEccccccEccccccHHHHHcccEEEEccEEEEEEcccccEEEEEcHHHHHHcccccccEEccccccEEEEcccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHcccEEEEEcc
Coil and Loop (DISEMBL)
MEFQKSLCLSLALFAFFISSSHalkfnvggkhgwvtnpgenynkwsgrnrflVNDTLFFkykkgsdsvllvnkddydscntkkpllkldsgdsefkldrsgpfyfisgnhdhcqkgQKLIVVVLherppppstgppttkppphapspkspspatqppatspstsptshapsanppkgssptpatspstsspyppkgyspvpatspstspsshapspyppkgyspvpatspstspsssqspaanaptglspapgtspstspssqppaanaptglspapgtspstspssqppaanaptgvspppgtspstsppavpsspgnapslapsnssnpaggtpppspsgsqtsgsqtssavstplSLGLLGVSLVLGLVSGIIFVGV
Flexible Loop (DISEMBL)
MEFQKSLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNkddydscntkkpllkldsgdseFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSLGLLGVSLVLGLVSGIIFVGV
Low Complexity Region (SEG)
MEFQKslclslalfaffissshalKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERppppstgppttkppphapspkspspatqppatspstsptshapsanppkgssptpatspstsspyppkgyspvpatspstspsshapspyppKGYspvpatspstspsssqspaanaptglspapgtspstspssqppaanaptglspapgtspstspssqppaanaptgvspppgtspstsppavpsspgnapslapsnssnpaggtpppspsgsqtsgsqtssavstplslgllgvslvlglvsgIIFVGV
Disordered region (IsUnstruct)
*****SLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKL******FKLDRSGPFYFISGNHDHCQKGQKLIVVVLH****************************************************************************************************************************************************************************************************************************************LSLGLLGVSLVLGLVSGIIFV**
Disordered Region (DISOPRED)
*****SLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLH*********************************************************************************************************************************************************************************************************************************************LGVSLVLGLVSGIIFVGV
Disordered Region (DISEMBL)
MEFQKSLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERP***********************************************************************************************************************************************************************************************************************************TPLSLGLLGVSLVLGLVSGIIFVGV
Disordered Region (DISPRO)
*EFQKSLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHE**************************************************************************************************************************************************************************************************************************************PLSLGLLGVSLVLGLVSGIIFVGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFQKSLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSLGLLGVSLVLGLVSGIIFVGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q9T076	349	Early nodulin-like protei	yes	no	0.702	0.765	0.452	6e-49
Q5JNJ5	237	Early nodulin-like protei	yes	no	0.326	0.523	0.496	2e-31
Q9SK27	182	Early nodulin-like protei	no	no	0.3	0.626	0.478	4e-23
Q8LC95	186	Early nodulin-like protei	no	no	0.326	0.666	0.421	5e-20
Q02917	187	Early nodulin-55-2 OS=Gly	no	no	0.302	0.614	0.380	1e-13
P93329	268	Early nodulin-20 OS=Medic	N/A	no	0.213	0.302	0.358	9e-10
Q05544	137	Early nodulin-55-1 (Fragm	no	no	0.168	0.467	0.462	6e-09

>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1

 Score =  195 bits (495), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 142/314 (45%), Positives = 177/314 (56%), Gaps = 47/314 (14%)

Query: 1   MEFQKSLCLSLA-LFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFF 59
           + F  ++ LSL+ LF      S+A KFNVGG   WVTNP ENY  WSG+NRFLV+DTL+F
Sbjct: 9   LSFFFTILLSLSTLFTI----SNARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYF 64

Query: 60  KYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKL 119
            Y KG+DSVL VNK DYD+CNTK P+ ++D GDSE  LDR GPFYFISGN D+C+KGQKL
Sbjct: 65  SYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKL 124

Query: 120 IVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQ-PPATSPSTSPTSHAPSANPPKGS 178
            VVV+  R        P+T   PHA +P S +P +  PP  + S   +S       P GS
Sbjct: 125 NVVVISAR-------IPSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGS 177

Query: 179 S--PTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS 236
           +  P  A SP +SS           A SP+TSP    P    PK  SPV  T+   +P  
Sbjct: 178 TTPPGGAHSPKSSS-----------AVSPATSP----PGSMAPKSGSPVSPTTSPPAPPK 222

Query: 237 SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT 296
           S SP              SPS++P + PPA  AP   S  P   PS++P + PP + AP 
Sbjct: 223 STSP-------------VSPSSAPMTSPPAPMAPKSSSTIP---PSSAPMTSPPGSMAPK 266

Query: 297 GVSPPPGTSPSTSP 310
             S P   SP+ SP
Sbjct: 267 S-SSPVSNSPTVSP 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 86/129 (66%), Gaps = 5/129 (3%)

Query: 11  LALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYK-KGSDSVL 69
           L L A F SSS A  F  GG+ GWV +P E++N W+ RNRF VNDT+ F +  +   SVL
Sbjct: 17  LGLVAVF-SSSEAYVFYAGGRDGWVVDPAESFNYWAERNRFQVNDTIVFLHDDEVGGSVL 75

Query: 70  LVNKDDYDSCNTKKPLLKLD---SGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHE 126
            V + D+D+C+T  P+ +L+   +G S F+ DRSGPF+FISG+ D CQKGQKL ++V+  
Sbjct: 76  QVTEGDFDTCSTGNPVQRLEDVAAGRSVFRFDRSGPFFFISGDEDRCQKGQKLYIIVMAV 135

Query: 127 RPPPPSTGP 135
           RP  PS  P
Sbjct: 136 RPTKPSEAP 144

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 79/119 (66%), Gaps = 5/119 (4%)

Query: 11  LALFA--FFISSSHALKFNVGGKHG-WVTNPGENYN--KWSGRNRFLVNDTLFFKYKKGS 65
           +A+F+  F  S + A +  VGGK G W   P  +Y+  +W+ + RF V D + F+Y+ G 
Sbjct: 14  VAIFSLIFLFSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGK 73

Query: 66  DSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
           DSVL V K+ Y+SCNT  PL     G+++ KLDRSGPFYFISG + HC+KGQKL +VV+
Sbjct: 74  DSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVVI 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 78/128 (60%), Gaps = 4/128 (3%)

Query: 4   QKSLCLSLALFAFFISSSHALK-FNVGGK-HGWVT--NPGENYNKWSGRNRFLVNDTLFF 59
           Q++L  +  L  F +++    K   VGGK   W    +P E+ NKW+   RF V DTL +
Sbjct: 3   QRTLVATFFLIFFLLTNLVCSKEIIVGGKTSSWKIPSSPSESLNKWAESLRFRVGDTLVW 62

Query: 60  KYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKL 119
           KY +  DSVL V KD Y +CNT  P     +GD++ KL+RSGP++FISG+  +C +G+KL
Sbjct: 63  KYDEEKDSVLQVTKDAYINCNTTNPAANYSNGDTKVKLERSGPYFFISGSKSNCVEGEKL 122

Query: 120 IVVVLHER 127
            +VV+  R
Sbjct: 123 HIVVMSSR 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 6/121 (4%)

Query: 9   LSLALFAFFISSSHALKFNVGG-KHGW---VTNPGENYNKWSGRNRFLVNDTLFFKYKKG 64
           L +      IS+S A K+ VGG +  W   ++ P ++ + W+  +RF + DTL FKY+K 
Sbjct: 12  LVMLAMCLLISTSEAEKYVVGGSEKSWKFPLSKP-DSLSHWANSHRFKIGDTLIFKYEKR 70

Query: 65  SDSVLLVNKDDYDSCNTK-KPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVV 123
           ++SV   N+ DY+ CNT  K  +  + G+++  L + G  +FISGN  HCQ G KL V+V
Sbjct: 71  TESVHEGNETDYEGCNTVGKYHIVFNGGNTKVMLTKPGFRHFISGNQSHCQMGLKLAVLV 130

Query: 124 L 124
           +
Sbjct: 131 I 131

Glycine max (taxid: 3847)

>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 48/81 (59%)

Query: 44  KWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPF 103
           +W+   +F+V DT+ F+Y   ++SV  V ++DYD C  +   +    G++   L ++G  
Sbjct: 48  RWASNYQFIVGDTITFQYNNKTESVHEVEEEDYDRCGIRGEHVDHYDGNTMVVLKKTGIH 107

Query: 104 YFISGNHDHCQKGQKLIVVVL 124
           +FISG   HC+ G KL VVV+
Sbjct: 108 HFISGKKRHCRLGLKLAVVVM 128

Medicago truncatula (taxid: 3880)

>sp|Q05544|NO551_SOYBN Early nodulin-55-1 (Fragment) OS=Glycine max GN=ENOD55-1 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 60  KYKKGSDSVLLVNKDDYDSCNT--KKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQ 117
           KY + ++SV  VN+ DY+ CNT  K+ +L  + G+++  L +SG  +FISGN  HCQ G 
Sbjct: 1   KYDERTESVHEVNETDYEQCNTVGKEHVL-FNDGNTKVMLTKSGFRHFISGNQSHCQMGL 59

Query: 118 KLIVVVL 124
           KL+VVV+
Sbjct: 60  KLMVVVM 66

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
255574684	379	copper ion binding protein, putative [Ri	0.660	0.662	0.464	8e-52
383932360	338	hypothetical protein [Gossypium hirsutum	0.852	0.958	0.429	1e-48
15234164	349	early nodulin-like protein 2 [Arabidopsi	0.702	0.765	0.452	4e-47
51968674	370	predicted GPI-anchored protein [Arabidop	0.478	0.491	0.558	4e-47
15238868	370	early nodulin-like protein 1 [Arabidopsi	0.478	0.491	0.558	7e-47
21592865	344	unknown [Arabidopsis thaliana]	0.384	0.424	0.563	2e-45
297799230	336	hypothetical protein ARALYDRAFT_913787 [	0.628	0.711	0.460	4e-45
28396618	370	phytocyanin protein, PUP2 [Arabidopsis t	0.478	0.491	0.548	1e-44
225446398	207	PREDICTED: early nodulin-like protein 2	0.442	0.811	0.519	2e-43
224128099	377	predicted protein [Populus trichocarpa]	0.878	0.885	0.405	2e-43

>gi|255574684|ref|XP_002528251.1| copper ion binding protein, putative [Ricinus communis] gi|223532337|gb|EEF34136.1| copper ion binding protein, putative [Ricinus communis]

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 136/293 (46%), Positives = 174/293 (59%), Gaps = 42/293 (14%)

Query: 1   MEFQKSLCLSLALFA-FFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFF 59
           M  + S  L LALFA FFI+SS    F VGGK GWV NP E+YN W+GRNRF VNDTL F
Sbjct: 3   MASKVSTSLCLALFACFFITSSFGYTFYVGGKDGWVLNPPEDYNDWAGRNRFSVNDTLVF 62

Query: 60  KYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKL 119
           KYK GSDSVL+V+KDDY SCNTK P+  L+SG S F+ DRSGPF+FI+GN ++CQKGQ+L
Sbjct: 63  KYKNGSDSVLVVSKDDYYSCNTKNPIKNLNSGTSVFQFDRSGPFFFITGNEENCQKGQRL 122

Query: 120 IVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPAT---------------------QPPA 158
           IVVVL  RP P    P ++     AP+  SP PA                      +PP+
Sbjct: 123 IVVVLAIRPKPTKESPKSSP----APTVSSPPPAIPPESSAHSPSSPSPKSPSPIAKPPS 178

Query: 159 TS---PSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPK-GYSPVPATSPSTSPS---S 211
           +S   P+ SP S +P A  P  S+  PA SP++ SP+      +P PA SP +  +   S
Sbjct: 179 SSAHVPAVSPASPSPIAKAPSSSAHVPAVSPASPSPFVEAPSLAPTPALSPKSPKAKTPS 238

Query: 212 HAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQP 264
            APSP+          TSP++SP+ + SP+A A   +SP+P  +    P S P
Sbjct: 239 FAPSPF---------TTSPTSSPTKAPSPSAVAHAPISPSPSPAAVEEPVSSP 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932360|gb|AFH57277.1| hypothetical protein [Gossypium hirsutum]

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 164/382 (42%), Positives = 203/382 (53%), Gaps = 58/382 (15%)

Query: 1   MEFQKSLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFK 60
           M+F   L L L LF  F+SSS+   F V     WV +P E YN W+G+ RF VNDT+ FK
Sbjct: 1   MKFHILLTLFLVLFVSFLSSSNCYTFYVD----WVLHPKEKYNDWAGKMRFQVNDTIIFK 56

Query: 61  YKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLI 120
           Y+KGSDSVLLV KDDYD C  K+PL+++++G SEFK   SGPFYFISG   HCQKGQK+I
Sbjct: 57  YEKGSDSVLLVQKDDYDKCERKQPLMEMNNGSSEFKYPHSGPFYFISGKEGHCQKGQKMI 116

Query: 121 VVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSP 180
            VV+  R   PS  PPT      APSPK   P T  PA     SP  H P A PP GSSP
Sbjct: 117 TVVMAVRHGTPSIHPPT------APSPKHHGPVTPGPA----HSPYHHGPVAKPPTGSSP 166

Query: 181 TPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSP 240
            PA +P   +  PP G SPVPA        +  P   PP   +P PA SP         P
Sbjct: 167 VPALAPGPIA-KPPTGSSPVPAL-------ALGPIAKPPTALTPGPAQSP-----YHHGP 213

Query: 241 AANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTG-VS 299
            +N PT  SPAP + P+ SP+          G SP+P    +  P + PP+  APT  VS
Sbjct: 214 ISNPPTASSPAPYSGPALSPTHH--------GPSPSPT---AEGPIATPPSPQAPTTPVS 262

Query: 300 PPPGTSP-------STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSS 352
            PPG +P          P    SSP   P+ + + +S P GG+PP             SS
Sbjct: 263 SPPGEAPVSGPPAPPQGPSPSSSSPSPPPAGSQTQTSTPPGGSPP------------KSS 310

Query: 353 AVSTPLSLGLLGVSLVLGLVSG 374
           A     S+ +L  SL++ +V G
Sbjct: 311 ATLIYSSIVVLAASLLINMVFG 332

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234164|ref|NP_194482.1| early nodulin-like protein 2 [Arabidopsis thaliana] gi|34395735|sp|Q9T076.1|ENL2_ARATH RecName: Full=Early nodulin-like protein 2; AltName: Full=Phytocyanin-like protein; Flags: Precursor gi|11762218|gb|AAG40387.1|AF325035_1 AT4g27520 [Arabidopsis thaliana] gi|4469003|emb|CAB38264.1| putative protein [Arabidopsis thaliana] gi|7269606|emb|CAB81402.1| putative protein [Arabidopsis thaliana] gi|23397249|gb|AAN31906.1| unknown protein [Arabidopsis thaliana] gi|24417234|gb|AAN60227.1| unknown [Arabidopsis thaliana] gi|56381997|gb|AAV85717.1| At4g27520 [Arabidopsis thaliana] gi|332659953|gb|AEE85353.1| early nodulin-like protein 2 [Arabidopsis thaliana]

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 142/314 (45%), Positives = 177/314 (56%), Gaps = 47/314 (14%)

Query: 1   MEFQKSLCLSLA-LFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFF 59
           + F  ++ LSL+ LF      S+A KFNVGG   WVTNP ENY  WSG+NRFLV+DTL+F
Sbjct: 9   LSFFFTILLSLSTLFTI----SNARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYF 64

Query: 60  KYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKL 119
            Y KG+DSVL VNK DYD+CNTK P+ ++D GDSE  LDR GPFYFISGN D+C+KGQKL
Sbjct: 65  SYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKL 124

Query: 120 IVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQ-PPATSPSTSPTSHAPSANPPKGS 178
            VVV+  R        P+T   PHA +P S +P +  PP  + S   +S       P GS
Sbjct: 125 NVVVISAR-------IPSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGS 177

Query: 179 S--PTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS 236
           +  P  A SP +SS           A SP+TSP    P    PK  SPV  T+   +P  
Sbjct: 178 TTPPGGAHSPKSSS-----------AVSPATSP----PGSMAPKSGSPVSPTTSPPAPPK 222

Query: 237 SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT 296
           S SP              SPS++P + PPA  AP   S  P   PS++P + PP + AP 
Sbjct: 223 STSP-------------VSPSSAPMTSPPAPMAPKSSSTIP---PSSAPMTSPPGSMAPK 266

Query: 297 GVSPPPGTSPSTSP 310
             S P   SP+ SP
Sbjct: 267 S-SSPVSNSPTVSP 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968674|dbj|BAD43029.1| predicted GPI-anchored protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 128/197 (64%), Gaps = 15/197 (7%)

Query: 3   FQKSLCLS---LALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFF 59
             KSLC S   LA FA F S + A +FNVGG   WVTNP ENYN W+ RNRF VND+L+F
Sbjct: 4   IMKSLCFSFLILASFATFFSVADAWRFNVGGNGAWVTNPQENYNTWAERNRFQVNDSLYF 63

Query: 60  KYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKL 119
           KY+KGSDSV  V K D+D CN + P+   ++G+S   LDRSG FYFISGN DHCQKGQKL
Sbjct: 64  KYEKGSDSVQQVMKADFDGCNVRNPIKNFENGESVVTLDRSGAFYFISGNQDHCQKGQKL 123

Query: 120 IVVVLHER--PPPPSTGP-PTTKP--PPHAPSPKSP-SPATQPPATSPSTSPTSHAPSAN 173
           IVVVL  R  P  P+  P P+  P  PP + SP SP +PA+ P  + P   P S    A 
Sbjct: 124 IVVVLAVRNQPSAPAHSPVPSVSPTQPPKSHSPVSPVAPASAPSKSQP---PRSSVSPAQ 180

Query: 174 PPKGSSP---TPATSPS 187
           PPK SSP   TPA SPS
Sbjct: 181 PPKSSSPISHTPALSPS 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238868|ref|NP_200198.1| early nodulin-like protein 1 [Arabidopsis thaliana] gi|10177249|dbj|BAB10717.1| unnamed protein product [Arabidopsis thaliana] gi|109946411|gb|ABG48384.1| At5g53870 [Arabidopsis thaliana] gi|332009038|gb|AED96421.1| early nodulin-like protein 1 [Arabidopsis thaliana]

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 127/197 (64%), Gaps = 15/197 (7%)

Query: 3   FQKSLCLS---LALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFF 59
             KSLC S   LA FA F S + A +FNVGG   WVTNP ENYN W+ RNRF VND+L+F
Sbjct: 4   IMKSLCFSFLILASFATFFSVADAWRFNVGGNGAWVTNPQENYNTWAERNRFQVNDSLYF 63

Query: 60  KYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKL 119
           KY KGSDSV  V K D+D CN + P+   ++G+S   LDRSG FYFISGN DHCQKGQKL
Sbjct: 64  KYAKGSDSVQQVMKADFDGCNVRNPIKNFENGESVVTLDRSGAFYFISGNQDHCQKGQKL 123

Query: 120 IVVVLHER--PPPPSTGP-PTTKP--PPHAPSPKSP-SPATQPPATSPSTSPTSHAPSAN 173
           IVVVL  R  P  P+  P P+  P  PP + SP SP +PA+ P  + P   P S    A 
Sbjct: 124 IVVVLAVRNQPSAPAHSPVPSVSPTQPPKSHSPVSPVAPASAPSKSQP---PRSSVSPAQ 180

Query: 174 PPKGSSP---TPATSPS 187
           PPK SSP   TPA SPS
Sbjct: 181 PPKSSSPISHTPALSPS 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592865|gb|AAM64815.1| unknown [Arabidopsis thaliana]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 109/158 (68%), Gaps = 12/158 (7%)

Query: 1   MEFQKSLCLSLA-LFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFF 59
           + F  ++ LSL+ LF      S+A KFNVGG   WVTNP ENY  WSG+NRFLV+DTL+F
Sbjct: 4   LSFFFTILLSLSTLFTI----SNARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYF 59

Query: 60  KYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKL 119
            Y KG+DSVL VNK DYD+CNTK P+ ++D GDSE  LDR GPFYFISGN D+C+KGQKL
Sbjct: 60  SYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKL 119

Query: 120 IVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPP 157
            VVV+  R        P+T   PHA +P S +P +  P
Sbjct: 120 NVVVISAR-------IPSTAQSPHAAAPGSSTPGSMTP 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799230|ref|XP_002867499.1| hypothetical protein ARALYDRAFT_913787 [Arabidopsis lyrata subsp. lyrata] gi|297313335|gb|EFH43758.1| hypothetical protein ARALYDRAFT_913787 [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/267 (46%), Positives = 159/267 (59%), Gaps = 28/267 (10%)

Query: 1   MEFQKSLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFK 60
           + F  ++ LSL+ F    + S A KF VGG   WV NP ENY  WSGRNRFLV+DTL+F 
Sbjct: 9   LSFFFTILLSLSTF---FTISDARKFKVGGSGAWVPNPPENYESWSGRNRFLVHDTLYFS 65

Query: 61  YKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLI 120
           Y KG+DSV+ VNK DYD+CN+K P+ ++D GDSE  LDR GPFYFISGN D+C+KGQKL 
Sbjct: 66  YAKGADSVVEVNKADYDACNSKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLA 125

Query: 121 VVVLHERPPPPSTGPPTTKPPPHAPSPKSPSP--ATQPPATSPSTSPTSHAPSANPPKGS 178
           VVV+  + P       +T  PPHA +P S +P  A  P ++SP +  TS   S  P  GS
Sbjct: 126 VVVISAKVP-------STAQPPHAAAPGSSTPGGAHSPKSSSPVSPTTSPPGSMAPKSGS 178

Query: 179 SPTPATSPSTSSPYPPKGYSPVPA-------------TSPSTSPSSHAPSPYPPKGYSPV 225
             +P TSP  S    PK  +PV                SPS++P +  P+P  PK  S V
Sbjct: 179 HGSPMTSPPGS--MAPKSDTPVSPATSPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTV 236

Query: 226 P-ATSPSTSPSSSQSPAANAPTGLSPA 251
           P +++P TSP    +P ++ P   SPA
Sbjct: 237 PPSSAPMTSPPGPMAPKSSTPVSNSPA 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28396618|emb|CAD66637.1| phytocyanin protein, PUP2 [Arabidopsis thaliana]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 125/197 (63%), Gaps = 15/197 (7%)

Query: 3   FQKSLCLS---LALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFF 59
             KSLC S   LA FA F S + A +FNVGG   WVTNP ENYN W+ RNRF VND+ +F
Sbjct: 4   IMKSLCFSFLILASFATFFSVADAWRFNVGGNGAWVTNPQENYNTWAERNRFQVNDSPYF 63

Query: 60  KYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKL 119
           KY K SDSV  V K D+D CN + P+   ++G+S   LDRSG FYFISGN DHCQKGQKL
Sbjct: 64  KYAKRSDSVQQVMKADFDGCNARNPIKNFENGESVVTLDRSGAFYFISGNQDHCQKGQKL 123

Query: 120 IVVVLHER--PPPPSTGP-PTTKP--PPHAPSPKSP-SPATQPPATSPSTSPTSHAPSAN 173
           IVVVL  R  P  P+  P P+  P  PP + SP SP +PA+ P  + P   P S    A 
Sbjct: 124 IVVVLAVRNQPSAPAHSPVPSVSPTQPPKSHSPVSPVAPASAPSKSQP---PRSSVSPAQ 180

Query: 174 PPKGSSP---TPATSPS 187
           PPK SSP   TPA SPS
Sbjct: 181 PPKSSSPISHTPALSPS 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446398|ref|XP_002275206.1| PREDICTED: early nodulin-like protein 2 [Vitis vinifera] gi|302143308|emb|CBI21869.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 113/177 (63%), Gaps = 9/177 (5%)

Query: 1   MEFQKSLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFK 60
           MEF K+  L LA+F  F+ SS    F VGGK GW  NP E+Y +W+ RNRF VNDTL FK
Sbjct: 1   MEFLKTSLLLLAIFMAFLCSSQGYVFYVGGKQGWSANPSEDYVQWAERNRFQVNDTLVFK 60

Query: 61  YKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLI 120
           Y+KG +SVL+VN++DY  CN + P+ K   G++EFKLDRSG F+FI GN D+CQKGQ+LI
Sbjct: 61  YEKGQNSVLVVNREDYYKCNVENPINKYTDGNTEFKLDRSGSFFFIGGNADYCQKGQRLI 120

Query: 121 VVVLHER------PPPPST--GPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHA 169
           VVVL  R       P PS    PP   PP  +P   SPSPA+ P     S +P  H 
Sbjct: 121 VVVLAVRNETQTPTPTPSVPGNPPVLSPPSESPE-GSPSPASSPAGDENSPAPAPHG 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128099|ref|XP_002329081.1| predicted protein [Populus trichocarpa] gi|222869750|gb|EEF06881.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 157/387 (40%), Positives = 219/387 (56%), Gaps = 53/387 (13%)

Query: 14  FAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNK 73
           ++F  S+++   F VGGK GWVTNP E+YN W+ +NRF VND+L FKY  GSDSVLLV K
Sbjct: 17  YSFTSSAAYNNSFYVGGKDGWVTNPSESYNHWAEKNRFQVNDSLVFKYNNGSDSVLLVTK 76

Query: 74  DDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERPPPPST 133
           DDY+SC TKKPL  + SG S F+ D+SGP++FISGN D+C+KGQK+ VVVL  +P    T
Sbjct: 77  DDYNSCKTKKPLKTMGSGSSVFQFDKSGPYFFISGNEDNCRKGQKMTVVVLSAKPKQAPT 136

Query: 134 GPPTTKPPPHAPSPKSPSPATQ------------------PPATSPSTSPTSHAPSANPP 175
             P ++PP  A SPK+PSP                       +  PS SP S AP +  P
Sbjct: 137 --PVSQPP--AMSPKAPSPVAHNNPSPAPSKSPSPSAEPPASSQGPSLSPISPAPISKTP 192

Query: 176 KGS---SPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPST 232
            GS   +P P+  P  SS  PP   +P  A     SP+S+AP+        PVPA SPS 
Sbjct: 193 SGSPLEAPGPSLVPVKSS--PPSADTPTLA----PSPTSNAPT-------GPVPAKSPSL 239

Query: 233 SPSS---SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGL-SPAPGTSPSTSPSSQ 288
           S SS   + SP ++APTG   APG SP    +  P  +  P+G  + APG+  S SP + 
Sbjct: 240 SVSSPYLAPSPFSDAPTG---APGPSPV---AMTPHISLVPSGSPASAPGSEISPSPLTN 293

Query: 289 PPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGS 348
           PPA +       P  ++P  SP  +P+   ++ +  P +S  PA     P+ +G+  + +
Sbjct: 294 PPAPSQSPESPSPLASAPVVSP--IPAKSPSSSTPTPKSSYTPAHS---PNSNGADLAPA 348

Query: 349 QTSSAVSTPLSLGLLGVSLVLGLVSGI 375
             +S V+TP ++ ++  S ++G V G+
Sbjct: 349 PAASCVATPSTVMVIVASFLIGSVIGV 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2137672	349	ENODL2 "early nodulin-like pro	0.271	0.295	0.699	1.9e-37
TAIR|locus:2154679	370	ENODL1 "early nodulin-like pro	0.271	0.278	0.660	4.6e-34
TAIR|locus:2127861	221	ENODL4 "early nodulin-like pro	0.263	0.452	0.6	2.7e-29
TAIR|locus:505006529	199	ENODL3 "early nodulin-like pro	0.263	0.502	0.61	9.1e-29
UNIPROTKB|Q5JNJ5	237	ENODL1 "Early nodulin-like pro	0.268	0.430	0.490	2.6e-24
TAIR|locus:2040164	182	ENODL14 "early nodulin-like pr	0.263	0.549	0.514	5.3e-24
TAIR|locus:2085775	203	ENODL9 "early nodulin-like pro	0.271	0.507	0.461	1.1e-23
TAIR|locus:2028396	177	ENODL6 "early nodulin-like pro	0.257	0.553	0.490	1.8e-23
TAIR|locus:2086899	188	ENODL5 "early nodulin-like pro	0.257	0.521	0.5	1e-22
TAIR|locus:2116767	177	ENODL15 "early nodulin-like pr	0.263	0.564	0.466	1.1e-21

TAIR|locus:2137672 ENODL2 "early nodulin-like protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 72/103 (69%), Positives = 83/103 (80%)

Query:    25 KFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP 84
             KFNVGG   WVTNP ENY  WSG+NRFLV+DTL+F Y KG+DSVL VNK DYD+CNTK P
Sbjct:    30 KFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNP 89

Query:    85 LLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER 127
             + ++D GDSE  LDR GPFYFISGN D+C+KGQKL VVV+  R
Sbjct:    90 IKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVVISAR 132

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2154679 ENODL1 "early nodulin-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 68/103 (66%), Positives = 78/103 (75%)

Query:    25 KFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP 84
             +FNVGG   WVTNP ENYN W+ RNRF VND+L+FKY KGSDSV  V K D+D CN + P
Sbjct:    29 RFNVGGNGAWVTNPQENYNTWAERNRFQVNDSLYFKYAKGSDSVQQVMKADFDGCNVRNP 88

Query:    85 LLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER 127
             +   ++G+S   LDRSG FYFISGN DHCQKGQKLIVVVL  R
Sbjct:    89 IKNFENGESVVTLDRSGAFYFISGNQDHCQKGQKLIVVVLAVR 131

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2127861 ENODL4 "early nodulin-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 60/100 (60%), Positives = 72/100 (72%)

Query:    25 KFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP 84
             KF VGG+ GWV  P E+Y+ WS RNRF VNDTL+FKY KG DSVL V++ +Y++CNT  P
Sbjct:    30 KFYVGGRDGWVLTPSEDYSHWSHRNRFQVNDTLYFKYVKGKDSVLEVSEKEYNTCNTTHP 89

Query:    85 LLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
             L  L  GDS F L RS PF+F+SGN   C KGQKL V V+
Sbjct:    90 LTSLSDGDSLFLLSRSDPFFFVSGNSGSCLKGQKLAVTVM 129

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:505006529 ENODL3 "early nodulin-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 61/100 (61%), Positives = 70/100 (70%)

Query:    25 KFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP 84
             KF VGGK GWV  P E+Y+ WS RNRF VNDTL FKY KG DSVL V + +Y++CNT  P
Sbjct:    28 KFYVGGKDGWVPTPSEDYSHWSHRNRFQVNDTLHFKYAKGKDSVLEVTEQEYNTCNTTHP 87

Query:    85 LLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
             L  L  GDS F L  SG ++FISGN  +C KGQKL V VL
Sbjct:    88 LTSLSDGDSLFLLSHSGSYFFISGNSQNCLKGQKLAVKVL 127

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

UNIPROTKB|Q5JNJ5 ENODL1 "Early nodulin-like protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 52/106 (49%), Positives = 74/106 (69%)

Query:    26 FNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYK-KGSDSVLLVNKDDYDSCNTKKP 84
             F  GG+ GWV +P E++N W+ RNRF VNDT+ F +  +   SVL V + D+D+C+T  P
Sbjct:    31 FYAGGRDGWVVDPAESFNYWAERNRFQVNDTIVFLHDDEVGGSVLQVTEGDFDTCSTGNP 90

Query:    85 LLKLD---SGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER 127
             + +L+   +G S F+ DRSGPF+FISG+ D CQKGQKL ++V+  R
Sbjct:    91 VQRLEDVAAGRSVFRFDRSGPFFFISGDEDRCQKGQKLYIIVMAVR 136

GO:0032578 "aleurone grain membrane" evidence=IDA

TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 53/103 (51%), Positives = 70/103 (67%)

Query:    28 VGGKHG-WVTNPGENYN--KWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP 84
             VGGK G W   P  +Y+  +W+ + RF V D + F+Y+ G DSVL V K+ Y+SCNT  P
Sbjct:    33 VGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNP 92

Query:    85 LLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER 127
             L     G+++ KLDRSGPFYFISG + HC+KGQKL +VV+  R
Sbjct:    93 LANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVVISPR 135

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 48/104 (46%), Positives = 68/104 (65%)

Query:    25 KFNVGGKHGWVTNPGEN-YNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKK 83
             +F VGG  GW    G   Y++W+ ++RF + D+L F Y+   DSVL V +D YDSCNT  
Sbjct:    29 EFTVGGATGWTVPSGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDS 88

Query:    84 PLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER 127
             P  K   G +   L+ SGP+YFISGN D+C+K +KL+V+V+ +R
Sbjct:    89 PTAKFADGKTSVTLNHSGPYYFISGNKDNCKKNEKLVVIVMADR 132

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2028396 ENODL6 "early nodulin-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 51/104 (49%), Positives = 72/104 (69%)

Query:    25 KFNVGGKHGWV----TNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCN 80
             +F  GG++GW+    +N  + +N+W+ +NRF V DT+ FKYKK  DSVL+V +D+Y  C 
Sbjct:    25 EFEAGGENGWIIPQSSNQSDIFNQWASKNRFKVGDTIRFKYKK--DSVLVVTEDEYKKCQ 82

Query:    81 TKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
             T KP L  +  D+ FKLDR G FYFISG   HC++GQK+I+ V+
Sbjct:    83 TTKPELYSNHDDTVFKLDRPGLFYFISGVSGHCEQGQKMIIKVM 126

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2086899 ENODL5 "early nodulin-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 52/104 (50%), Positives = 71/104 (68%)

Query:    25 KFNVGGKHGWVTNP----GENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCN 80
             +F VGG++GW+       G+ +N+W+  NRF V DTL FKY K  DSVL+V++++Y  C 
Sbjct:    26 EFEVGGENGWIVPKSKTLGDAFNQWASDNRFKVGDTLRFKYTK--DSVLVVSEEEYKKCK 83

Query:    81 TKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
               KP L  ++ D+ FKLDR G FYFISG   HC+KGQK+IV V+
Sbjct:    84 ATKPQLYSNNEDTVFKLDRPGLFYFISGVSGHCEKGQKMIVKVM 127

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2116767 ENODL15 "early nodulin-like protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 48/103 (46%), Positives = 66/103 (64%)

Query:    28 VGGKHG-WVTNPGENY--NKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP 84
             VGGK G W   P  ++  N+W+ + RF V D + FKY+ G DSVL V ++ Y+ CNT  P
Sbjct:    29 VGGKSGDWKIPPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSP 88

Query:    85 LLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER 127
                   G+++ KLD++GP YF+SG   HCQKGQKL +VV+  R
Sbjct:    89 KASYTDGNTKVKLDQAGPVYFVSGTEGHCQKGQKLRLVVITPR 131

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
pfam02298	84	pfam02298, Cu_bind_like, Plastocyanin-like domain	5e-26
PLN03148	167	PLN03148, PLN03148, Blue copper-like protein; Prov	1e-21
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-16
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-16
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-13
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-13
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-12
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-12
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-11
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-11
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-10
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-10
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	7e-10
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-09
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-09
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-09
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-09
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-09
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	8e-09
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-08
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-08
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	5e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	9e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-06
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	2e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	2e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	3e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-06
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	4e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	7e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	7e-06
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	7e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	8e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	1e-05
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	1e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-05
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	3e-05
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	3e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-05
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	4e-05
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	4e-05
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	5e-05
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	5e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-05
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	6e-05
COG5422	1175	COG5422, ROM1, RhoGEF, Guanine nucleotide exchange	6e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-05
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	7e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	7e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-05
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	8e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	9e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	1e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	1e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	1e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-04
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	2e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	2e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	3e-04
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	3e-04
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	3e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-04
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	3e-04
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	3e-04
pfam11593	381	pfam11593, Med3, Mediator complex subunit 3 fungal	3e-04
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-04
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	4e-04
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	4e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	5e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	5e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	5e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-04
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	6e-04
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	6e-04
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	6e-04
PTZ00429	746	PTZ00429, PTZ00429, beta-adaptin; Provisional	7e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-04
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	8e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	8e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	8e-04
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	8e-04
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	8e-04
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	8e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	0.001
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.001
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.001
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.001
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.001
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.001
COG1429	1388	COG1429, CobN, Cobalamin biosynthesis protein CobN	0.001
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	0.001
pfam00716	326	pfam00716, Peptidase_S21, Assemblin (Peptidase fam	0.001
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.002
pfam04652	315	pfam04652, DUF605, Vta1 like	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.002
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.002
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.002
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.002
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	0.002
pfam04388	667	pfam04388, Hamartin, Hamartin protein	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.003
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.003
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	0.003
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	0.003
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.003
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.004
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	0.004
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.004
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	0.004
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.004
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.004
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.004

>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain

 Score = 99.3 bits (248), Expect = 5e-26
 Identities = 34/84 (40%), Positives = 44/84 (52%)

Query: 34  WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDS 93
           W      +Y  W+    F V DTL F Y KG  +V+ V K DY+SCNT KP+    +G+ 
Sbjct: 1   WTVPLNADYTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGND 60

Query: 94  EFKLDRSGPFYFISGNHDHCQKGQ 117
              L + G  YFI G   HC+ GQ
Sbjct: 61  IIPLTKPGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional

 Score = 90.3 bits (224), Expect = 1e-21
 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 6   SLCLSLALFAFF-ISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG 64
           +  L    FA F  S++ A    VG   GW  NPG NY  W+    F V D + F+Y+K 
Sbjct: 2   AHLLLFCFFALFSASATTATDHIVGANKGW--NPGINYTLWANNQTFYVGDLISFRYQKT 59

Query: 65  SDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
             +V  VN+  YD+C T+       SG     L+++  +YFI GN   C  G K+ ++V 
Sbjct: 60  QYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPLNKAKRYYFICGN-GQCFNGMKVTILV- 117

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSP 150
           H  PPPPS          H+ +P + 
Sbjct: 118 HPLPPPPSHTAAANGAKSHSAAPAAF 143

Length = 167

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 81.5 bits (201), Expect = 1e-16
 Identities = 62/248 (25%), Positives = 82/248 (33%), Gaps = 17/248 (6%)

Query: 127  RPPPPSTGPP-TTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS 185
             P PPS  PP T  P P  PSP   +    P        P        P + S P  A  
Sbjct: 2610 GPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669

Query: 186  PS--TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAAN 243
                  +  PP+      A     S +S A  P PP    P P    +   ++   P   
Sbjct: 2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP---HALVSATPLPPGPA 2726

Query: 244  APTGLSPAPGTSPSTSPSSQP---PAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSP 300
            A    SPA   +P+          P   A     P     P+ +P + P A        P
Sbjct: 2727 AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

Query: 301  PPGT-------SPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSA 353
               +        PS   PA P +   AP+ A   +++PAG  PPP  S   T+       
Sbjct: 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP-TSAQPTAPPPPPGP 2845

Query: 354  VSTPLSLG 361
                L LG
Sbjct: 2846 PPPSLPLG 2853

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 58/231 (25%), Positives = 81/231 (35%), Gaps = 8/231 (3%)

Query: 126 ERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS 185
             P P S  PP   PPP +P P      ++      S  P   A         +   + +
Sbjct: 107 TPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDA 166

Query: 186 PSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAP 245
            S+     P       A +PS+ P+   PS  P       P  S   S S+S    A   
Sbjct: 167 ASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGR 226

Query: 246 TGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTS 305
           +    A  +S  +S S        P    P P  +P T P+    A+             
Sbjct: 227 SAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS--------GWNGP 278

Query: 306 PSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVST 356
            S   PA  SS     S +PS SS  +G  P    + S +S S+ SS+ ST
Sbjct: 279 SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSST 329

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 57/231 (24%), Positives = 81/231 (35%), Gaps = 4/231 (1%)

Query: 130  PPSTGPPTTKPPPHAP-SPKSPSPATQPPATSPSTSPTS-HAPSANPPKGSSPTPATSPS 187
            P     P     P  P +P  P+   +PP T+   +P    AP+A PP+  +     S S
Sbjct: 2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLS 2792

Query: 188  TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATS-PSTSPSSSQSPAANAPT 246
             S    P  + P    +   +P++  P    P G  P P ++ P+  P     P  + P 
Sbjct: 2793 ESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852

Query: 247  GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
            G S APG      P S+ PAA       P        + S    +   P      P    
Sbjct: 2853 GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQ 2912

Query: 307  STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
            +  PP     P   P   P     P    PP +P+       + S AV  P
Sbjct: 2913 APPPPQPQPQPPPPPQPQPPPPP-PPRPQPPLAPTTDPAGAGEPSGAVPQP 2962

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 75.0 bits (184), Expect = 2e-14
 Identities = 64/252 (25%), Positives = 83/252 (32%), Gaps = 26/252 (10%)

Query: 127  RPPPPSTGPPTTKPPPHAPSPKSP-----------SPATQPPATSPSTSPTSHAPSANPP 175
             PPPP   PPT +P PHA    +P           SPA       P+       P     
Sbjct: 2700 DPPPP---PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR 2756

Query: 176  KGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHA----PSPYPPKGYSPVPATSPS 231
                PT A  P+ + P  P    P   T P+ +  S +    PSP+ P    P    +P+
Sbjct: 2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD-PPAAVLAPA 2815

Query: 232  TSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPA 291
             +   + SPA   P   S  P   P       PP  + P G S APG      P S+ PA
Sbjct: 2816 AALPPAASPAGPLPPPTSAQPTAPPPPPG---PPPPSLPLGGSVAPGGDVRRRPPSRSPA 2872

Query: 292  ANAPTGVSPP----PGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSG 347
            A       PP       + S S  +    P          +  P    P P P       
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP 2932

Query: 348  SQTSSAVSTPLS 359
                     PL+
Sbjct: 2933 PPPPPRPQPPLA 2944

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 51/225 (22%), Positives = 75/225 (33%), Gaps = 4/225 (1%)

Query: 127  RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
            R    S+ P   +     P+  S +    PP   P+  P   AP A       P    + 
Sbjct: 2672 RAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEP---APHALVSATPLPPGPAAA 2728

Query: 187  STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
              +SP  P   +P    +   +P   A    PP    P PA +P  +P++        P 
Sbjct: 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP-PAPAPPAAPAAGPPRRLTRPA 2787

Query: 247  GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
              S +       SP        A    + A   + S +    PP +  PT   PPPG  P
Sbjct: 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847

Query: 307  STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTS 351
             + P     +PG      P + S  A    P  P   + +    S
Sbjct: 2848 PSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVS 2892

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 2/196 (1%)

Query: 144 APSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPAT 203
            P+P +      P   S      +  P+A     +   PA + + ++P            
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 204 SPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS-SQSPAANAPTGLSPAPGTSPSTSPSS 262
           +P   P  H   P    G    PA +   +P++   +PA  AP   + A    P+ +P++
Sbjct: 649 APEHHPK-HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707

Query: 263 QPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPS 322
            PPA  A    +  P  +   S  S       P    P     P+ +P   P  P  AP+
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPA 767

Query: 323 LAPSNSSNPAGGTPPP 338
            AP+ +  P+  +   
Sbjct: 768 AAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 73.4 bits (180), Expect = 7e-14
 Identities = 53/218 (24%), Positives = 72/218 (33%), Gaps = 2/218 (0%)

Query: 127  RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
             P  P    P  +P P    P   S A +P A   S  P +       P+G +P     P
Sbjct: 2560 PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP 2619

Query: 187  STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
             T +P PP       A  P   P    P P  P+        S           A  +  
Sbjct: 2620 DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP 2679

Query: 247  GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
               P    +  T  S    A   P   +P P      S +  PP   A    SP    +P
Sbjct: 2680 PQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

Query: 307  STSP-PAVPSSPGN-APSLAPSNSSNPAGGTPPPSPSG 342
            +    PA P++PG  A    P  ++ P    PP +P+ 
Sbjct: 2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAA 2777

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 57/240 (23%), Positives = 75/240 (31%), Gaps = 17/240 (7%)

Query: 128  PPPPSTGPPTTKPPPHAPS-----PKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTP 182
            P  P+ GPP     P   S        PSP       +   +P +  P A  P G  P P
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831

Query: 183  ATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAA 242
             ++  T+ P PP    P      S +P        P +  +  PA            PA 
Sbjct: 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891

Query: 243  NAPT---GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVS 299
            +  T    L P     P    +  PP         P P   P   P  QPP A       
Sbjct: 2892 SRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA------- 2944

Query: 300  PPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLS 359
            P    + +  P      P    +L P   + P    P P+PS  +   S T       LS
Sbjct: 2945 PTTDPAGAGEPSGAVPQPWLG-ALVPGRVAVPRFRVPQPAPS-REAPASSTPPLTGHSLS 3002

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 46/215 (21%), Positives = 81/215 (37%), Gaps = 11/215 (5%)

Query: 128 PPPPSTGP-PTTKPPPHAPSPKSPSPATQP--PATSPSTSPTSHAPSANPPKGSSPTPAT 184
           P   +  P     P   AP+  +P+PA  P  PA +P+ +  + A +A P + S    A 
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433

Query: 185 SPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSP--STSPSSSQSPAA 242
           + +  +     G +P PA +P+ +P++ A             A +     +P+++ +PA 
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAD 493

Query: 243 NAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPP 302
           + P      P    S +P+       AP G        P+T   + P  A      +P  
Sbjct: 494 DDPPPWEELPPEFASPAPAQPDA---APAGWVAESIPDPAT---ADPDDAFETLAPAPAA 547

Query: 303 GTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPP 337
             +P  +    P      P  + S   +   G  P
Sbjct: 548 APAPRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 39/197 (19%), Positives = 57/197 (28%), Gaps = 3/197 (1%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
              P          +P   A      +PA    A +P+ +  + AP    P+      A 
Sbjct: 600 PPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAV 659

Query: 185 SPSTSSPY--PPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAA 242
             ++      P K     PA  P     +   +P       P PA + +     +  PAA
Sbjct: 660 PDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAA 719

Query: 243 NAPTGLSPAPGTSPSTSPS-SQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPP 301
             P     A   SP+       PP  + P   + AP   P     +   A  A    SPP
Sbjct: 720 QPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779

Query: 302 PGTSPSTSPPAVPSSPG 318
                     A      
Sbjct: 780 SEEEEMAEDDAPSMDDE 796

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 53/239 (22%), Positives = 73/239 (30%), Gaps = 12/239 (5%)

Query: 127  RPPPPSTGPPTTKP--PPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
            RPP  +  P    P  P   P  +   PA    + S  + P+   P+  P    +P  A 
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818

Query: 185  SPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGY----SPVPATSPSTSPSSSQSP 240
             P  +SP  P         +    P    P   P  G       V    PS SP++  + 
Sbjct: 2819 -PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAA 2877

Query: 241  AANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSP 300
             A  P      P  S ST   + PP           P       P  QP     P    P
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPP-----DQPERPPQPQAPPPPQPQPQPPPPPQPQPP 2932

Query: 301  PPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLS 359
            PP       P A  + P  A   + +      G   P   +  +    Q + +   P S
Sbjct: 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.4 bits (172), Expect = 7e-13
 Identities = 53/226 (23%), Positives = 84/226 (37%), Gaps = 6/226 (2%)

Query: 129  PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
            P   + P   +    A    SP    +  A  P+    + + +  PP   +P PA     
Sbjct: 2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHALV 2716

Query: 189  SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTG- 247
            S+   P G +     SP+  P++ AP   P    +P     P+  P+++  PA   P   
Sbjct: 2717 SATPLPPGPAAARQASPAL-PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

Query: 248  -LSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
               P    +     S      + P+   PA   +   +P++  P A +P G  PPP ++ 
Sbjct: 2776 AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ 2835

Query: 307  STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSS 352
             T+PP  P      PSL    S  P G      PS S  +     +
Sbjct: 2836 PTAPP--PPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA 2879

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.4 bits (172), Expect = 7e-13
 Identities = 55/231 (23%), Positives = 84/231 (36%), Gaps = 19/231 (8%)

Query: 126  ERPPPPSTGPPTTKPPPHA-PSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSP-TPA 183
            +RP   +  P        A P P  P+P   P A   +T       +A     + P  PA
Sbjct: 2681 QRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA 2740

Query: 184  TSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAAN 243
                 + P  P G +       +  P + AP   P    +  P      + +S      +
Sbjct: 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA---AGPPRRLTRPAVASLSESRES 2797

Query: 244  APTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPS--SQPPAANAPTGVSPP 301
             P+   PA   +   +P++  P A +P G  P P ++  T+P     PP  + P G S  
Sbjct: 2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Query: 302  PG-----TSPSTSPPAVPSSPGN-------APSLAPSNSSNPAGGTPPPSP 340
            PG       PS SP A P++P          P+++ S  S       P  P
Sbjct: 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP 2908

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.6 bits (171), Expect = 8e-13
 Identities = 37/232 (15%), Positives = 64/232 (27%), Gaps = 11/232 (4%)

Query: 118 KLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKG 177
           ++  VV          GPP             P+    P A +      + A  A     
Sbjct: 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAA 642

Query: 178 SSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSS 237
            +P  A                V     S                +P PA +P+   + +
Sbjct: 643 PAPGVAAPEHH--------PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

Query: 238 QSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTG 297
            +  A      +  P    +  P++QPP A A    +P+P          +P     P G
Sbjct: 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQA-AQGASAPSPAADDPVPLPPEPDDPPDPAG 753

Query: 298 VSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSS--NPAGGTPPPSPSGSQTSG 347
               P   P+ +P A P++       +       + A          ++   
Sbjct: 754 APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVA 805

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 11/242 (4%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
              P   ++          +     P  + +  A +PS+ P    PS  P   S   P  
Sbjct: 150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRR 209

Query: 185 SPSTSSPYPPKGYSP-------VPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSS 237
           S   S+       +P         A+S  +S S  +   + P+   P+P  +P T P+  
Sbjct: 210 SSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRI 269

Query: 238 QSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTG 297
              +        P P +S S+     P  + +  G  PAP +  ++S SS    +++ + 
Sbjct: 270 WEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSST 329

Query: 298 VSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
            S    +S S+   AV   P  + S +PS    PA  + P        + S  +++   P
Sbjct: 330 SS----SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRP 385

Query: 358 LS 359
             
Sbjct: 386 TR 387

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 45/229 (19%), Positives = 73/229 (31%), Gaps = 15/229 (6%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATS--PSTSPTSHAPSANPPKGSSPTPATS 185
                TG       P A +  + + A  PPA    P+T+      +       +   A +
Sbjct: 398 AVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARA 457

Query: 186 PSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQ-SPAANA 244
            + S     +   P   +  +++P+S AP     +      A S +T  +       A A
Sbjct: 458 SADSRC-DERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516

Query: 245 PTGLSPAPGTSPSTSPSSQPPAANAP----TGLSPA------PGTSPSTSPSSQPPAANA 294
               +PA    P+       PAA AP     G + A       G   S+   ++  AA  
Sbjct: 517 SREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAK 576

Query: 295 PTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGS 343
           P   +P     P+    AV      A +       N A      + S  
Sbjct: 577 P-AAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRG 624

Length = 830

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 59/234 (25%), Positives = 86/234 (36%), Gaps = 8/234 (3%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
               P   P  + P   A      S A      +   S       A     + P P+T P
Sbjct: 140 PVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPP 199

Query: 187 STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
           + +SP P       P  S   S S+ +P+P P +  +     S S S SS  S     P 
Sbjct: 200 AAASPRP-------PRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252

Query: 247 GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
              P P  +P T P+    A+      S     S S+SP  + P+ +  +  S P  +SP
Sbjct: 253 NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSP 312

Query: 307 STSPPAVPSSPGNAPS-LAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLS 359
             S  +  S   ++ S  + S SS  A  +P PSPS S +       A  +   
Sbjct: 313 RASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR 366

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 44/229 (19%), Positives = 72/229 (31%), Gaps = 19/229 (8%)

Query: 130 PPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS 189
           P  +G         A     P+PA   PA +        A  A  P  ++   A + + +
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424

Query: 190 SPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLS 249
              P          + +  P           G +P PA +P+ +P+++  PAA  P    
Sbjct: 425 RRSPAPEALAAARQASARGP-----------GGAPAPAPAPAAAPAAAARPAAAGP---R 470

Query: 250 PAPGTSPSTSPSSQPPAANAPTGLSP-----APGTSPSTSPSSQPPAANAPTGVSPPPGT 304
           P    + +    + P AA AP    P      P    S +P+    A       S P   
Sbjct: 471 PVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530

Query: 305 SPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSA 353
           +          +P  A + AP  ++       P  P  S +        
Sbjct: 531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 4/192 (2%)

Query: 168 HAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPA 227
            AP A   +G     ++ P   +  P    +P    +P+ + ++ AP+         V A
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 228 TSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSS 287
             P   P     P A+      PA     + +     PA  AP   + A    P+ +P++
Sbjct: 650 --PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707

Query: 288 QPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNP--AGGTPPPSPSGSQT 345
            PPA  A    + PP  +   S P+  +         P +  +P  A   PPP P+ +  
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPA 767

Query: 346 SGSQTSSAVSTP 357
           +    +   S P
Sbjct: 768 AAPAAAPPPSPP 779

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 63/251 (25%), Positives = 96/251 (38%), Gaps = 17/251 (6%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
             R P      P    PP A SP+ P  ++   A++ S +P     +A+    SS   ++
Sbjct: 182 TARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSS 241

Query: 185 SPSTSSPYPPKGYSPVPATSPSTSPSSHA---------PSPYPPKGYSPVPATSPSTSPS 235
           S S+   + P+   P+P  +P T P+              P P    S     SPS SPS
Sbjct: 242 SESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPS 301

Query: 236 SSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQ---PPAA 292
           S  S  A +    S +  +S  +S SS   ++ +  G + +PG SPS SPS     PPA 
Sbjct: 302 SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPAD 361

Query: 293 NAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPP-----PSPSGSQTSG 347
            +     P P  +PS+   +           A +  +     T       P PS      
Sbjct: 362 PSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGA 421

Query: 348 SQTSSAVSTPL 358
           +  +     PL
Sbjct: 422 ASGAFYARYPL 432

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 8/185 (4%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
           P     G P    P           A    A   S  P   A +       +P  A + +
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 188 TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTG 247
            +    P      PAT+     ++   +P        VPA + + + + S+    +A   
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAP--------VPAKANARASADSRCDERDAQPP 471

Query: 248 LSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPS 307
                 ++P++          AP   +P+  T  +   +  P AA+     +     +P 
Sbjct: 472 ADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPE 531

Query: 308 TSPPA 312
             PP 
Sbjct: 532 ARPPT 536

Length = 830

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 45/189 (23%), Positives = 59/189 (31%), Gaps = 4/189 (2%)

Query: 130  PPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS 189
            PP+  P    PPP +  P +P P   PP  S      S AP  +  +        +   +
Sbjct: 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG-GSVAPGGDVRRRPPSRSPAAKPAA 2877

Query: 190  SPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLS 249
               PP      PA S ST   +  P   P +   P     P   P     P    P    
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPPDQ-PERPPQPQAPPPPQPQPQPPPPPQPQPP--PP 2934

Query: 250  PAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTS 309
            P P   P  +P++ P  A  P+G  P P            P    P         + ST 
Sbjct: 2935 PPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994

Query: 310  PPAVPSSPG 318
            P    S   
Sbjct: 2995 PLTGHSLSR 3003

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 37/218 (16%), Positives = 75/218 (34%), Gaps = 9/218 (4%)

Query: 153 ATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSH 212
           A +P  +     P     +A     + P PA +   ++   P      PA +P+ + ++ 
Sbjct: 362 AFRPGQSGGGAGP----ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAAR 417

Query: 213 APSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTG 272
           A +  P +  SP P    +   +S++ P        +PA   + +  P++  P   A   
Sbjct: 418 AVAAAPAR-RSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAA 476

Query: 273 LSP----APGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNS 328
            +     AP  +P+ +    PP    P   + P    P  +P    +     P+ A  + 
Sbjct: 477 AAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD 536

Query: 329 SNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSLGLLGVS 366
           +       P +    + + +        P      G+ 
Sbjct: 537 AFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 52/259 (20%), Positives = 85/259 (32%), Gaps = 29/259 (11%)

Query: 130 PPSTGPPTTKPPPHAPSP-----KSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
                 P T PPP   +         +P       +P++     +P+   P    P P T
Sbjct: 61  ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPT 120

Query: 185 SPSTSS-PYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAAN 243
            P  S  P P    S +     S  P   A  P      + V + + S+  ++    +  
Sbjct: 121 PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPE 180

Query: 244 APTGLSPAPGT-------------------SPSTSPSSQPPAANAPTGLSPAPGTSPSTS 284
                  +P                     SP ++ +S P  A   +    A  +S  +S
Sbjct: 181 ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSS 240

Query: 285 PSSQPPAANAPTGVSPPPGTSPSTSPP----AVPSSPGNAPSLAPSNSSNPAGGTPPPSP 340
            S        P    P P  +P T P     A   +  ++     S+SS+P   +P PSP
Sbjct: 241 SSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300

Query: 341 SGSQTSGSQTSSAVSTPLS 359
           S   +  + +S   S+  S
Sbjct: 301 SSPGSGPAPSSPRASSSSS 319

Length = 1352

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 60.2 bits (145), Expect = 7e-10
 Identities = 56/225 (24%), Positives = 83/225 (36%), Gaps = 4/225 (1%)

Query: 137 TTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKG 196
           TT  P     P + +  T   A   S +PT    S  P   S  +  TS + ++  P   
Sbjct: 446 TTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPA 505

Query: 197 YSPVPATSP---STSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPG 253
            +   ATSP    TS + +A SP P        ATSP T  +S  +  +   T  SP   
Sbjct: 506 VTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNN 565

Query: 254 TSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSP-PA 312
           T+     S+     +A T      G+SP++     P ++++    +    T   TS  P 
Sbjct: 566 TNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPT 625

Query: 313 VPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
              +        PS +        P   + SQ SG   SS    P
Sbjct: 626 GGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYP 670

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 27/148 (18%), Positives = 41/148 (27%), Gaps = 8/148 (5%)

Query: 145 PSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATS 204
           P+   P P   P + +P+ S  + A                P  S+P      +P     
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQ----APAVPLP 416

Query: 205 PSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQP 264
            +TS    A             AT    S  ++ S A    + L       P+ S   + 
Sbjct: 417 ETTSQLLAARQQLQRAQ----GATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKA 472

Query: 265 PAANAPTGLSPAPGTSPSTSPSSQPPAA 292
           PA                  P + P A 
Sbjct: 473 PAKKEAYRWKATNPVEVKKEPVATPKAL 500

Length = 647

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 6/197 (3%)

Query: 157 PATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSP 216
           PA +   +P    P+       +P    + +  +   P   +   A   + +P + A + 
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 217 YPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPA 276
              +  +P  A +P  +       A       + A   +      S+    +A       
Sbjct: 420 -ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARAS---ADSRCDERDAQPPADSG 475

Query: 277 PGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTP 336
             ++P++          AP   +P   T  +      P++     + A +    PA    
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAP--PAPEAR 533

Query: 337 PPSPSGSQTSGSQTSSA 353
           PP+P+ +  +     +A
Sbjct: 534 PPTPAAAAPAARAGGAA 550

Length = 830

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 44/211 (20%), Positives = 66/211 (31%), Gaps = 9/211 (4%)

Query: 130 PPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS 189
              +            +          P   P T   ++   + P    S     SP+  
Sbjct: 44  VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPARE 103

Query: 190 SPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLS 249
               P G S      P+  P+S  PSP P      +               A+    G S
Sbjct: 104 GSPTPPGPSSPDPPPPTPPPASPPPSPAP-----DLSEMLRPVGSPGPPPAASPPAAGAS 158

Query: 250 PAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTS 309
           PA   S + S        ++P   + AP + P+  P S PPAA +P     PP  S   S
Sbjct: 159 PAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASP----RPPRRSSPIS 214

Query: 310 PPAVPSSPGNAPSLAPSNSSNPAGGTPPPSP 340
             A   +P    S A    ++ +  +   S 
Sbjct: 215 ASASSPAPAPGRSAADDAGASSSDSSSSESS 245

Length = 1352

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 32/166 (19%), Positives = 52/166 (31%), Gaps = 22/166 (13%)

Query: 170 PSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATS 229
           P+A  P+   P  + +P+ S+       + V        P   A +          P  +
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASA----------PQQA 410

Query: 230 PSTSPSSSQSPAANAPTGLSPAPGTS--PSTSPSSQPPAANAPTGLSPAPGTSPSTSPSS 287
           P+     + S    A   L  A G +    + P++   A    + L       P+ S   
Sbjct: 411 PAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALE 470

Query: 288 QPPA--------ANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAP 325
           + PA        A  P  V   P  +P     A+       P LA 
Sbjct: 471 KAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEK--TPELAA 514

Length = 647

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 9/232 (3%)

Query: 126 ERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS 185
           E  P P   P        + S       +   A     +  +      PP G  P P T 
Sbjct: 19  EFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTE 78

Query: 186 PSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAP 245
              +       +S      P++     +P+P  P    P P T P        SP  +  
Sbjct: 79  APANESRSTPTWSLSTLA-PASPAREGSPTPPGPSSPDPPPPTPPP------ASPPPSPA 131

Query: 246 TGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTS 305
             LS       S  P           G SPA   S + S        ++P   +  P + 
Sbjct: 132 PDLSEMLRPVGSPGPPPAASPP--AAGASPAAVASDAASSRQAALPLSSPEETARAPSSP 189

Query: 306 PSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
           P+  PP+ P +  +      S+  + +  +P P+P  S    +  SS+ S+ 
Sbjct: 190 PAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSS 241

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 198 SPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPS 257
           +          P + AP+  P        A +P+ +P+++ S  A  P    PAP     
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVA--QAAAAPAPAAAPAAAASAPAAPPAAAPPAP----- 425

Query: 258 TSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSP 317
                  PAA AP    PA   +      + PPA  AP  V+ P   +P  +  +   +P
Sbjct: 426 ----VAAPAAAAPAAA-PAAAPAAVALAPA-PPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 318 GNAPSLAP 325
             AP+ A 
Sbjct: 480 AAAPAAAR 487

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 147 PKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPS 206
           P + + A  P        P + AP+A P          + + +    P   +  PA  P+
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPV------AQAAAAPAPAAAPAAAASAPAAPPA 419

Query: 207 TSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQ--- 263
            +P +   +P      +  PA +P+    +   PA  AP  ++     +P  + +S    
Sbjct: 420 AAPPAPVAAP-AAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPA 478

Query: 264 PPAANAPTGLSPAP 277
           P AA A   L+P  
Sbjct: 479 PAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 56.9 bits (137), Expect = 8e-09
 Identities = 57/214 (26%), Positives = 81/214 (37%), Gaps = 11/214 (5%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
           P  PS       P P A  P+  SP T      P TSP    PS++P    S      P+
Sbjct: 349 PEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPA 408

Query: 188 TSSPYP-PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPV-PATSPSTSPSSSQSPAANAP 245
                P P   S VP   P+   +       P   Y  + P TSPS +  +  SP+ ++ 
Sbjct: 409 EPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSST 468

Query: 246 TGLSPAPGTSPSTSPSS-QPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGT 304
           + +   P T+P+T+ +    P       LSP         P+S  PAA        P G 
Sbjct: 469 SSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAA--------PVGK 520

Query: 305 SPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPP 338
              +S   V     +AP  A ++  + A   P P
Sbjct: 521 VAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRP 554

Length = 576

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 219 PKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPG 278
             G  P     P  +  ++    + A    SP+P  S + +  S P +A  P G +P   
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAA-SPSPSQSSAAAQPSAPQSATQPAG-TPPTV 427

Query: 279 TSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPG 318
           +    +     P + AP  V P         P +  SS G
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLG 467

Length = 614

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 131 PSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSS 190
              G           +  +   A   PA +   +  + AP+A P    +P PA +P + +
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 191 PYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSP 250
              P G +P P  + + S               P PA +P  + + + +P A      +P
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPA-----------PAPAAAPEPTAAPAPAPPAAPAPAAAP 494

Query: 251 APGTSPSTSPSSQPPAA 267
           A   +P+    +   A 
Sbjct: 495 AAPAAPAAPAGADDAAT 511

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 5/183 (2%)

Query: 179 SPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQ 238
           + T   +P    P    G  P P    + +  + A         +   A +P  + +++ 
Sbjct: 361 AVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAA 420

Query: 239 SPAANAPTGLSPAP----GTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
           + A   P   +P      G   +   +  P  ANA               P +   +A+A
Sbjct: 421 TRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD-ERDAQPPADSGSASA 479

Query: 295 PTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAV 354
           P   +PP          A PS+   A        +  +    P + +         + A 
Sbjct: 480 PASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAA 539

Query: 355 STP 357
           + P
Sbjct: 540 AAP 542

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 16/99 (16%), Positives = 33/99 (33%)

Query: 260 PSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGN 319
           P++  P    P   +    ++ +T+  +   A      V PPP ++P  +P        +
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 320 APSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPL 358
               A        G T       +  S ++  ++    L
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERL 459

Length = 647

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 33/115 (28%), Positives = 41/115 (35%), Gaps = 16/115 (13%)

Query: 131 PSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSS 190
           P   P   KP   APSP  P+PA   P+T P  +  ++ P    P   + TP   P    
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPA---PSTRPKAAAAANIPPK-EPVRETATPPPVP---- 413

Query: 191 PYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAP 245
             P     PVP T  S    + A  P   K     PA      P   +  A  A 
Sbjct: 414 --PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPA------PPKEEEKALIAD 460

Length = 585

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 1/166 (0%)

Query: 193 PPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAP 252
           P       P        +   P+P      +   +  P+ +  +  + AA AP   + A 
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 253 GTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQP-PAANAPTGVSPPPGTSPSTSPP 311
            T     P++  P A A  G   A G +P  + ++    A +        P     ++  
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASA 479

Query: 312 AVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
               +P +A       ++ P+  TP   P     + +    A +  
Sbjct: 480 PASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525

Length = 830

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 47/211 (22%), Positives = 70/211 (33%), Gaps = 1/211 (0%)

Query: 131 PSTGPPTTKPPPHAPS-PKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS 189
           P T P T++    APS  ++P P   P  T    +  SH P  + P+         P   
Sbjct: 576 PLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRP 635

Query: 190 SPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLS 249
               P  ++ +   +P   P        P           PS + +++  P   AP  + 
Sbjct: 636 LRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQ 695

Query: 250 PAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTS 309
           P P       P + PP        +      P+ +P    P A AP    PP        
Sbjct: 696 PPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 755

Query: 310 PPAVPSSPGNAPSLAPSNSSNPAGGTPPPSP 340
           PPA        P+ AP   +       PP+P
Sbjct: 756 PPAAAPGRARPPAAAPGAPTPQPPPQAPPAP 786

Length = 991

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 3/130 (2%)

Query: 177 GSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS 236
            ++   A      +P  P+  +P  A     + +  AP+  P    S   A   +  P+ 
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAP-APAAAPAAAASAPAAPPAAAPPAP 425

Query: 237 SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT 296
             +PAA AP    PA   +      + PPA  AP  ++     +P  + +S  PA  A  
Sbjct: 426 VAAPAAAAPAAA-PAAAPAAVALAPA-PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483

Query: 297 GVSPPPGTSP 306
             +    T  
Sbjct: 484 AAARLTPTEE 493

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 126 ERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS 185
           E   P     P    P  A    +P           +    + +  A PP  + P P  +
Sbjct: 371 EAAAPAEKKTPA--RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAA 428

Query: 186 PSTSSP--YPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAAN 243
           P+ ++P   P    + V       + ++      P +        S + +P+++ + A  
Sbjct: 429 PAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488

Query: 244 APTGLSPA 251
            PT     
Sbjct: 489 TPTEEGDV 496

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 23/154 (14%), Positives = 37/154 (24%), Gaps = 2/154 (1%)

Query: 205 PSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQP 264
           P+   +     P P     P  A  P+   + +   A         A     S +P+   
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGA--AAAPAEASAAPAPGV 647

Query: 265 PAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLA 324
            A          P  S             AP    P P  +   +P     +       A
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707

Query: 325 PSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPL 358
              +         P  +    S    ++    PL
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 139 KPPPHAPSPKSPSPAT--QPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKG 196
           KP   A +       T  +P A +P+ +P      A      +  PA + S  +  P   
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAP---VAQAAAAPAPAAAPAAAASAPAAPP--- 418

Query: 197 YSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSP 256
                  +P  +P++ AP+  P    + V       + ++ ++ A        PA  ++ 
Sbjct: 419 --AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476

Query: 257 STSPSSQPPAANAPTGLSPA 276
               ++   A   PT     
Sbjct: 477 PAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 225 VPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTS 284
           +     + +P+++   AA A    +PAP  +   + ++  PAA      +PAP  +P + 
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 285 PSSQPPAANAPTGVSPPPGTSPSTSP-PAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGS 343
             + P    A    SPPP  +PS  P PA  ++P    + AP+  + PA    P +P+  
Sbjct: 445 AGNAP----AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500

Query: 344 QTSGSQT 350
                  
Sbjct: 501 AAPAGAD 507

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 10/127 (7%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
             P +  P      P          A   PA +   +  + AP+A P    +P PA +P 
Sbjct: 392 GAPAAAAPSAAAAAP---------AAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPP 442

Query: 188 TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTG 247
           + +   P G +P P  + + S    AP+P      +  PA +P  +P+ + +PAA A   
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQP-APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501

Query: 248 LSPAPGT 254
                  
Sbjct: 502 APAGADD 508

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 19/109 (17%), Positives = 39/109 (35%)

Query: 236 SSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAP 295
           ++  P    P   +    ++ +T+  +   A      + P P ++P  +P+   P   + 
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Query: 296 TGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQ 344
              +         +  A  S P  A    P NS+     +  P+PS  +
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALE 470

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 7/123 (5%)

Query: 219 PKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPG 278
           P    P P   P ++  ++ + A  APT     P       P +  P        +PA  
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQ------APAVP 414

Query: 279 TSPSTSPSSQ-PPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPP 337
              +TS             G +    + P+ +  A P +       +   + +     P 
Sbjct: 415 LPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPA 474

Query: 338 PSP 340
              
Sbjct: 475 KKE 477

Length = 647

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 56/223 (25%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
           +   P T  P   P P  P P  P    QP   +    PT H P         PT     
Sbjct: 612 QSHIPETSAPRQWPMPLRPIPMRP-LRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIG 670

Query: 187 STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
                     Y P P  + +  P   AP    P   +P P   P+  P  +Q PAA A  
Sbjct: 671 HIP-------YQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAA-ATG 722

Query: 247 GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
              P         P +  P    P   +P     P+ +P    P A AP   +P P    
Sbjct: 723 RARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQP---- 778

Query: 307 STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQ 349
              PP  P +P   P  AP+    P  G            G Q
Sbjct: 779 ---PPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQ 818

Length = 991

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 147 PKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPS 206
           P    P  +    +   +  S           +    + P +SSP  P   S        
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVP---SFPSPPEDP 204

Query: 207 TSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPA 266
           +SPS  +  P P    S  P  SP +  + S  P   AP           ST+  + P A
Sbjct: 205 SSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264

Query: 267 ANAP 270
           +  P
Sbjct: 265 SATP 268

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 175 PKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSP 234
             G  P     P  + P       P  A + S SPS  + +  P    +P  AT P+ +P
Sbjct: 370 SGGRGPKQHIKPVFTQPAA--APQPSAAAAASPSPSQSSAAAQPS---APQSATQPAGTP 424

Query: 235 SSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
                P  +     +  P   PST+P +  PA               S  PS+  P    
Sbjct: 425 -----PTVSVDPP-AAVPVNPPSTAPQAVRPAQFKEE-KKIPVSKVSSLGPSTLRPIQEK 477

Query: 295 PTGVS 299
               +
Sbjct: 478 AEQAT 482

Length = 614

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 54/234 (23%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
           P           P P  P      P      +S    P   A S  PP    P+ A   S
Sbjct: 259 PSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPP-LPLPSQAQPHS 317

Query: 188 TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPST----SPSSSQSPAAN 243
            + P         P       P+   P   PP   +P+P     +          SP   
Sbjct: 318 HTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPT-TPIPQLPNQSHKHPPHLQGPSPFPQ 376

Query: 244 APTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPG 303
            P+ L P P   P +S  +  P +  P  L   P + P  S  +QPP       + P   
Sbjct: 377 MPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKAS 436

Query: 304 TSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
           T P +   + P     A    P  S       PPPS   S  +    +S+ S P
Sbjct: 437 THPHSGLHSGPPQSPFAQH--PFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQP 488

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 41/208 (19%), Positives = 54/208 (25%), Gaps = 22/208 (10%)

Query: 131 PSTGPPTTKPPPH--APSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
           PS G P   PP       P+ P P  +P             P             T+   
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPR----QDQLPTARPA 145

Query: 189 SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGL 248
              YP     P P   P    +          G+ P    +   S +  Q          
Sbjct: 146 ---YPAYQQRPEPGAWP--RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDR------ 194

Query: 249 SPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPST 308
            P     P      +      P      P    +  P   P A +   G   PP    + 
Sbjct: 195 EPYDAGRPEYDQRRRDYDHPRPD--WDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAP 252

Query: 309 SPPAVPSSPGNAPSLAPSNSSNPAGGTP 336
             P  PS+PG    LA   +  P  G P
Sbjct: 253 VVPIRPSAPG---PLAAQPAPAPGPGEP 277

Length = 617

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 52/253 (20%), Positives = 74/253 (29%), Gaps = 28/253 (11%)

Query: 128  PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSH-----------APSANPPK 176
            P P   GPP    PP   +P   +PA  P                       +  A  P 
Sbjct: 2496 PDPGGGGPPDPDAPP---APSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPP 2552

Query: 177  GSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPS--PYPPKGYSPV--PATSPST 232
               P  A   +     PP   +P P + P+ +  +  P   P   +  +PV         
Sbjct: 2553 PPLPPAAPPAAPDRSVPPPRPAPRP-SEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGP 2611

Query: 233  SPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAA 292
            +P S   P  +AP    P+P  + +      PP    P      P     + P       
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671

Query: 293  NAPTGVSPPPGTSPSTSPPAV--------PSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQ 344
             A    SPP       + P V        P  P   P  AP      A   PP   +  Q
Sbjct: 2672 RAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV-SATPLPPGPAAARQ 2730

Query: 345  TSGSQTSSAVSTP 357
             S +  ++     
Sbjct: 2731 ASPALPAAPAPPA 2743

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 41/212 (19%), Positives = 54/212 (25%), Gaps = 8/212 (3%)

Query: 127  RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
            RP    +      PP     P  P     P        P    P   PP    P  A + 
Sbjct: 2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTT 2947

Query: 187  STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
              +    P G  P P            P    P+      A + ST P +  S +  +  
Sbjct: 2948 DPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSW 3007

Query: 247  GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
              S A        P S       P     +   S   S S +          +  P    
Sbjct: 3008 ASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLE------ALDPLPPE 3061

Query: 307  STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPP 338
               P A    P      A +  S  +   PPP
Sbjct: 3062 PHDPFAHEPDPA--TPEAGARESPSSQFGPPP 3091

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 49/195 (25%), Positives = 68/195 (34%), Gaps = 15/195 (7%)

Query: 150 PSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSP 209
           P PA     T    +   + PS+ P   SS +     S             P+ SPS+  
Sbjct: 258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERS-------------PSPSPSSPG 304

Query: 210 SSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANA 269
           S  APS       S     S S+S SSS   +  A     P+P  SPS S    PPA  +
Sbjct: 305 SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPP-PPADPS 363

Query: 270 PTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSS-PGNAPSLAPSNS 328
                P P  +PS+  +S           +         +    P+  P  +P  A + S
Sbjct: 364 SPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAAS 423

Query: 329 SNPAGGTPPPSPSGS 343
                  P  +PSG 
Sbjct: 424 GAFYARYPLLTPSGE 438

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 227 ATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPS 286
           A  P+ +  ++       P         +P+ +P +Q  AA AP     A     + S  
Sbjct: 363 AFKPAAAAEAAAPAEKKTPA---RPEAAAPAAAPVAQAAAAPAPAAAPAA-----AASAP 414

Query: 287 SQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPS----LAPSNSSNPAGGTPPPSPSG 342
           + PPAA  P  V+ P   +P+ +P A P++   AP+     AP   + P    P P+ + 
Sbjct: 415 AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVAS 474

Query: 343 SQ-TSGSQTSSAVSTPLSLG 361
           +     +  ++A  TP   G
Sbjct: 475 AAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 130 PPSTGPPTTKPPPHAPSPKSPSPATQP-----PATSPSTSPTSHAPSANPPKGSSPTPAT 184
            P+ GPP  +    A    + S  + P     PA++  + P S +P           P++
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 185 S-PSTSSPYPPKGYSPVPATSP-STSPSSHAPSPYPPKGYSPVPATSPSTS-PSSSQSPA 241
              S+  P P    S  P  SP S +  S  P P  P           ST+ P+   + A
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Query: 242 ANAPTG 247
             AP G
Sbjct: 267 TPAPIG 272

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 61/223 (27%), Positives = 80/223 (35%), Gaps = 13/223 (5%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
             PS+ PP       +  P  P P+   P +    S ++  P   PP+     PA S   
Sbjct: 287 QHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQ-QPPREQPLPPAPSMPH 345

Query: 189 SSPYPPKGYSPVPATSPSTSPSSHAPSPYP--PKGYSPVPATSPSTSPSSSQSPAANAPT 246
             P P      +P  S    P    PSP+P  P    P PA  P +S  +   P+A+ P 
Sbjct: 346 IKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPP 405

Query: 247 GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSP---SSQPPAANAPTGVSPPPG 303
            L   P + P  S  +QPP       L P   T P +       Q P A  P      P 
Sbjct: 406 -LQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPA 464

Query: 304 TSP------STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSP 340
             P      ST      +S G+ P  +   SS    G  PP P
Sbjct: 465 IGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLP 507

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 193 PPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAP 252
              G +  PA +  ++ ++ AP+  P    +  PA + + +P+++  PA       +PAP
Sbjct: 386 GVAGGAGAPAAAAPSAAAA-APAAAPAPA-AAAPAAAAAPAPAAAPQPAP------APAP 437

Query: 253 GTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPA 312
             +P +   + P         SP P  +PS  P+  P AA  PT    P   +      A
Sbjct: 438 APAPPSPAGNAPAGGAP----SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493

Query: 313 VPSSPGNAPSLAPS 326
             +    A      
Sbjct: 494 PAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 23/113 (20%), Positives = 33/113 (29%)

Query: 134 GPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYP 193
              T            P+ A+     S S    S       P   S +      +S    
Sbjct: 163 VATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSD 222

Query: 194 PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
               SP   T+PS  P   AP P P +   P+    P+   +S+        T
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGIT 275

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 252 PGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPP 311
           PG++ + + ++   AA A    + AP      +P+  PPAA AP   + PP  + + +  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAP-AAAPAAKAPAAPAPAPPAAAAP---AAPPKPAAAAAAA 93

Query: 312 AVPSSPGNAPSLAPSNSSNPAGGTPP 337
           A P++P  A + A   ++       P
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 25/148 (16%), Positives = 40/148 (27%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
           P P   PP  + P   P P         PA       T     A  P  +   PA     
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGP 110

Query: 189 SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGL 248
           +    P    PV      T   +++P   P +  +         +P+S Q P+       
Sbjct: 111 TIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQK 170

Query: 249 SPAPGTSPSTSPSSQPPAANAPTGLSPA 276
           +         +  + P   +        
Sbjct: 171 NDESQLQQQPNGETPPQQTDGAGDDESE 198

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 209 PSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAAN 268
           P++ A +  P +  +P    + + + +    P A A    +PA   + + S  + PPAA 
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAA----PVAQAAAAPAPAAAPAAAASAPAAPPAAA 421

Query: 269 APTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNS 328
            P  ++     +P+         A AP  V+  P      +P  V      AP  A +++
Sbjct: 422 PPAPVAAPAAAAPA------AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475

Query: 329 SNPAGGTPPPSP 340
           +      P  + 
Sbjct: 476 APAPAAAPAAAR 487

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 225 VPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSP--- 281
           VP  +P  +  ++ +P+   PT   PAP T P  + ++  P        +  P   P   
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPT---PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV 417

Query: 282 STSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSS 316
           +      P +A   T  + P    P  +PPA P  
Sbjct: 418 APPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 28/134 (20%), Positives = 40/134 (29%), Gaps = 3/134 (2%)

Query: 224 PVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPST 283
           P P          +     N+            S SPS  P ++         P    S 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 284 SPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGS 343
           S SS PPA ++    +PPP     T+P   P      P   P     P   T  P+P  +
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPP---PPVQQVPPLSTAKPTPPSA 264

Query: 344 QTSGSQTSSAVSTP 357
             + +         
Sbjct: 265 SATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 13/141 (9%)

Query: 174 PPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTS 233
             +            ++       +P  A +P+      A +P      +P  A  P+ +
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPA------AAAPAAAAAPAPAAAPQPAPA 434

Query: 234 PSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAAN 293
           P+ + +P        +   G +PS  P++ P A  AP    PA    P+ +P+  PPAA 
Sbjct: 435 PAPAPAPP---SPAGNAPAGGAPSPPPAAAPSAQPAPA---PAAAPEPTAAPAPAPPAAP 488

Query: 294 APTGVSPPPGTSPSTSPPAVP 314
           AP   +P    +P+    A  
Sbjct: 489 APAA-APAAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 169 APSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPAT 228
           A +A     ++P  A +P+ ++P      +P  A  P+ +P+     P P        A 
Sbjct: 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

Query: 229 SPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQ 288
           SP  + + S  PA        P    +P+   +  P AA       PA   +P+    + 
Sbjct: 455 SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA-------PAAPAAPAAPAGAD 507

Query: 289 PPAA 292
             A 
Sbjct: 508 DAAT 511

Length = 824

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 42/228 (18%), Positives = 62/228 (27%), Gaps = 38/228 (16%)

Query: 141 PPHAPSPKSPSPATQPPATSPSTSPTSH---------------APSANPPKGSS---PTP 182
                 P S S +     T+ + S                      A  PK       + 
Sbjct: 582 SAAEAQPSSQSLSPISAVTTAAASLADDDILDAVLAARDSLLSDLDALSPKEGDGKKSSA 641

Query: 183 ATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAA 242
              P T    PP    P   + P++SP +   S           AT  S   ++  S +A
Sbjct: 642 DRKPKT----PPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSA 697

Query: 243 NAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPP 302
            AP          P   P  +PP   AP   + A    P+ +       +      S   
Sbjct: 698 PAP---------PPVPDPYDRPPWEEAPEV-ASANDG-PNNAAEGNLSESVEDASNSELQ 746

Query: 303 GTSPSTSP----PAVPSSPGNAPSL-APSNSSNPAGGTPPPSPSGSQT 345
                 +      A   SP +  +L   S+             SGS T
Sbjct: 747 AVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNLVLLSSGSIT 794

Length = 944

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 33/173 (19%), Positives = 54/173 (31%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
                P      ++          S   +   P++  ++S +S +  ++    SS + ++
Sbjct: 277 GPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336

Query: 185 SPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANA 244
             +  SP P    SP P+  P  +  S       P      PA S           A   
Sbjct: 337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAG 396

Query: 245 PTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTG 297
                 A G  P+  P   P  A A +G   A     + S    P +   P G
Sbjct: 397 RARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPPG 449

Length = 1352

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 14/110 (12%)

Query: 244 APTGLSPAPGTSPSTS-PSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPP 302
           A  G  P     P  + P++ P  + A    SP+P     +S ++QP A        P  
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAA-SPSP---SQSSAAAQPSA--------PQS 416

Query: 303 GTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSS 352
            T P+ +PP V   P  A       S+ P    P       +   S+ SS
Sbjct: 417 ATQPAGTPPTVSVDPP-AAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465

Length = 614

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 52/217 (23%), Positives = 67/217 (30%), Gaps = 21/217 (9%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPA----TQPPATSPSTSPTSHAPSANPPKGSSP 180
              PP   +  P T  P   P P  P P      QP   +    PT H P         P
Sbjct: 605 TPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKP 664

Query: 181 T---PATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSS 237
           T       P   SP       P+     +  P   AP+P  P    P  A  P+ +   +
Sbjct: 665 TWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRA 724

Query: 238 QSPAANA--------------PTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPST 283
           + PAA                P   +P     P+ +P    P A AP   +P P      
Sbjct: 725 RPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPP 784

Query: 284 SPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNA 320
           +P  +P  A  P        TS    P A P   G  
Sbjct: 785 APQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPT 821

Length = 991

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 232 TSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPA 291
                  + A  A    + A  ++P+ +P+++ PAA AP    P    +P+  P     A
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA---PPAAAAPAAPPKPAAAA 90

Query: 292 ANAPTGVSPPPGTSPSTSPPAVPSSPGNAP 321
           A A    + PP  + + +P A        P
Sbjct: 91  A-AAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 38/191 (19%), Positives = 59/191 (30%)

Query: 148 KSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPST 207
             P+P T P     ++     +    P   SS     SPS S   P  G +P    + S+
Sbjct: 258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSS 317

Query: 208 SPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAA 267
           S SS   S       S     +  +   S     + +       P +       S+ P++
Sbjct: 318 SSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377

Query: 268 NAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSN 327
            A +   P    + +                +  P  SP  +  A  +     P L PS 
Sbjct: 378 PAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSG 437

Query: 328 SSNPAGGTPPP 338
              P    PPP
Sbjct: 438 EPWPGSPPPPP 448

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 135 PPTTKPPPHAPSPKSPSPAT-QPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYP 193
           P            K+P+      PA +P     +    A  P  ++  PA  P+ + P P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 194 ---PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSP 250
              P   +P  A + + +  + AP+P        V A     +P  + + AA AP     
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV-AIPVRVAPEPAVASAAPAPAAAPA 484

Query: 251 APGTSPS 257
           A   +P+
Sbjct: 485 AARLTPT 491

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 158 ATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPY 217
              P+  P     +A  P   +P P+T P  ++        PV  T+    P    P P 
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETAT---PPPVPPRPV 417

Query: 218 PPKGYSPVPATSPSTSPSS-SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAP 270
            P    PVP T  S    + +  P    P    PAP       P  +  A  A 
Sbjct: 418 AP----PVPHTPESAPKLTRAAIPVDEKPKYTPPAP-------PKEEEKALIAD 460

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 196 GYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTS 255
            Y P    +P+ + ++ A +   P      PA     +P+ +   AA       PA   +
Sbjct: 35  DYGPGSTAAPTAAAAAAAAAASAPA---AAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA 91

Query: 256 PSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
            + +P++ P AA A      A       +P     AA A
Sbjct: 92  AAAAPAAPPAAAAAAA--PAAAAVEDEVTPLRGAAAAVA 128

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
            P   +           A S  + +PA + PA      P + AP+A PPK ++   A + 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA-PPKPAAAAAAAAA 95

Query: 187 STSSPYPPKGYSPVPATSPSTS 208
             + P      +P  A      
Sbjct: 96  PAAPPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 24/144 (16%), Positives = 35/144 (24%), Gaps = 9/144 (6%)

Query: 211 SHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQP--PAAN 268
              PSP  P   + +P   P   P+ +              P  SP+ +P +    PA  
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGP 107

Query: 269 APTGLSPAPG-TSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSN 327
           A   +   PG   P   P         P                        AP+ +   
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMVT---QNPANSPLDQPAQQRALQQLQQRY--GAPA-SGQL 161

Query: 328 SSNPAGGTPPPSPSGSQTSGSQTS 351
            S              Q    +T 
Sbjct: 162 PSQQQSAQKNDESQLQQQPNGETP 185

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 34/191 (17%), Positives = 56/191 (29%), Gaps = 11/191 (5%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPP------ATSPSTSPTSHAPSANPPKGSSPTP 182
           P P+   PT    P     K  + A          A     +  +     + P+  +P  
Sbjct: 69  PAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPR-QAPAA 127

Query: 183 ATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPA- 241
           A   + S P P        A   +     HA S  P + ++    T+P            
Sbjct: 128 APVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVA 187

Query: 242 ANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPP 301
           A AP     A   +   + +          G            P++ PP   AP   +P 
Sbjct: 188 APAPVPAIAAALAAH-AAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIVVAP--AAPA 244

Query: 302 PGTSPSTSPPA 312
              + + + PA
Sbjct: 245 ALAAVAAAAPA 255

Length = 559

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 13/204 (6%)

Query: 152 PATQPPATSPSTSPTSHAPSANPPKGSSPTPAT-SPSTSSPYPPKGYSPVPATSPSTSPS 210
           P +       + S  + + +A    G S    +   +++  Y     S  P  +P  S +
Sbjct: 383 PHSNASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNT 442

Query: 211 SHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAP 270
            ++  P     YS +P          S +P +NAP  LS AP +S     S+   A    
Sbjct: 443 PYSNPPNSNPPYSNLP---------YSNTPYSNAP--LSNAPPSSAKDHHSAYHAAYQHR 491

Query: 271 TGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNA-PSLAPSNSS 329
               PA     +  P++      A   V  P  + P  S P   ++   A P+       
Sbjct: 492 AANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAPYGGNAATTADPNGIAKRED 551

Query: 330 NPAGGTPPPSPSGSQTSGSQTSSA 353
           +P GGT       S     ++SS+
Sbjct: 552 HPEGGTNRQKYEQSDEESVESSSS 575

Length = 1560

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 169 APSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPAT 228
            P+  PP       A   +T+S     G    PA++  + P S +P              
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSF--------- 197

Query: 229 SPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQ 288
                PS  + P++ + + L PAP +  S +P   P +          P   P  +    
Sbjct: 198 -----PSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPES-------PTNPSPPPGPAAPPP 245

Query: 289 PPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAP 321
           PP    P   +  P    +++ PA         
Sbjct: 246 PPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 34/202 (16%), Positives = 44/202 (21%), Gaps = 9/202 (4%)

Query: 153 ATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSH 212
            T  P+      P  HA   + P+   P           Y        P   P       
Sbjct: 86  ITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEG----YGGPRADDRPPGLPRQDQLPT 141

Query: 213 APSPYPPKGYSPVPATSPSTS-PSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT 271
           A   YP     P P   P  +     Q      P     A   S +          +A  
Sbjct: 142 ARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGR 201

Query: 272 GLSPAPGTSPSTS-PSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSN 330
                         P    P  +      PPPG          P  P             
Sbjct: 202 PEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGA--GHVHRGGPGPPE-RDDAPVVPIRP 258

Query: 331 PAGGTPPPSPSGSQTSGSQTSS 352
            A G     P+ +   G  T+ 
Sbjct: 259 SAPGPLAAQPAPAPGPGEPTAR 280

Length = 617

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 22/105 (20%), Positives = 38/105 (36%)

Query: 237 SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT 296
            QS A  +       P  + +T+  +  PA  AP   +P    +P+ + +  P       
Sbjct: 148 DQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQN 207

Query: 297 GVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPS 341
            V  P   +  T+    P++P      AP  +      TP   P+
Sbjct: 208 AVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252

Length = 331

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 207 TSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPA 266
            +  + AP+   P   +  PA +P+ +       A  A    +PA    P+ +P+  P  
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAA-----AAPAAAAAPAPAAAPQPAPAPAPAPAP 441

Query: 267 ANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPS 326
            +           SP  + +     A AP   +P P  +P+ +PPA P+        AP+
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA-APEPTAAPAPAPPAAPAPAAAPA--APA 498

Query: 327 NSSNPAGGTP 336
             + PAG   
Sbjct: 499 APAAPAGADD 508

Length = 824

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 39/219 (17%), Positives = 73/219 (33%), Gaps = 4/219 (1%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
               +T PPT        +    +  +    T+     ++ +   +          +SP+
Sbjct: 535 VTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPT 594

Query: 188 TSSPYPPKGYSPVP-ATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
           +  P  P      P + S ST+P   +  P   +  +    + PST+  S+ SP     T
Sbjct: 595 SQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGT 654

Query: 247 GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
               +   + STS     P     T   P P  +  ++PS Q  A    T       ++ 
Sbjct: 655 TSQVSGPGNSSTSRY---PGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTT 711

Query: 307 STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQT 345
             +  +   +  +  +   +  + P   T    PS S  
Sbjct: 712 KETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSK 750

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 10/102 (9%)

Query: 229 SPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQ 288
           S    P     P    P   + AP  S + + S  P  ++A    +       +T P+  
Sbjct: 370 SGGRGPKQHIKPVFTQP---AAAPQPSAAAAASPSPSQSSAA---AQPSAPQSATQPAGT 423

Query: 289 PPAANAPTGVS---PPPGTSPSTSPPAVPSSPG-NAPSLAPS 326
           PP  +     +    PP T+P    PA          S   S
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465

Length = 614

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 46/217 (21%), Positives = 68/217 (31%), Gaps = 15/217 (6%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
           R P  + G      PP  P   +P+ A  PP      +  + AP A P     P PA  P
Sbjct: 267 RAPETARGAT---GPPPPPEAAAPNGAAAPPDGVWGAA-LAGAPLALPAPPDPPPPA--P 320

Query: 187 STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQS--PAANA 244
           +  +         +   SP   P  H P  +P +         P+ +P SS     A   
Sbjct: 321 AGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKR-------RRPTWTPPSSLEDLSAGRH 373

Query: 245 PTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGT 304
               +  P     ++  +  P A  P G       +P  +    P     P    PPP T
Sbjct: 374 HPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPAT 433

Query: 305 SPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPS 341
              ++ P     P   P   P   +       P   +
Sbjct: 434 PLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDAT 470

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 10/155 (6%)

Query: 205 PSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQP 264
              +P +      P     P  +  P  +   +   A  AP    PAP  + +    +  
Sbjct: 588 VGPAPGAAGGEGPPA----PASSGPPEEAARPAAPAAPAAPAA--PAPAGAAAAPAEASA 641

Query: 265 PAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLA 324
             A         P        S       A  G + P    P+ +P A  +  G AP+  
Sbjct: 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Query: 325 PSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLS 359
               +     TPP   +    +    ++  ++  S
Sbjct: 702 APAPA----ATPPAGQADDPAAQPPQAAQGASAPS 732

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 6/130 (4%)

Query: 234 PSSSQSPAANAPT------GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSS 287
           PS+S                L  A G     + +    AA      +PA     + +  +
Sbjct: 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPA 424

Query: 288 QPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSG 347
              A       +P P             +P   P+ APS    PA    P   +    + 
Sbjct: 425 PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484

Query: 348 SQTSSAVSTP 357
               +  + P
Sbjct: 485 PAAPAPAAAP 494

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 43/212 (20%), Positives = 52/212 (24%), Gaps = 24/212 (11%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKS-------PSPATQPPATSPSTSPTSHAPSANPPKGSSP 180
            P P   PP        P   +          A           P         P+G  P
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQV--LPQGMPP 186

Query: 181 TPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSP 240
             A  P    P  P GY   P            P    P+ + P P+ +P+  P   Q P
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQ---------GHPEQVQPQQFLPAPSQAPAQPPLPPQLP 237

Query: 241 AANAPTGLSPAPGTSPST-SPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVS 299
               P      PG S     P  QPP          A    P   P+  P          
Sbjct: 238 QQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPP-PQNQPTPHPGLPQGQNAPL 296

Query: 300 PPPGTSPS----TSPPAVPSSPGNAPSLAPSN 327
           PPP           P      P     L   +
Sbjct: 297 PPPQQPQLLPLVQQPQGQQRGPQFREQLVQLS 328

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 116 GQKLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPP 175
           G+ + + +  +     +T      P    P P    P  QP AT+P  +P    P+A   
Sbjct: 503 GRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA 562

Query: 176 KGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSS 211
             SS  PA  P+ SSP PP    P P+ +  +SP  
Sbjct: 563 --SSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.9 bits (115), Expect = 6e-06
 Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 20/154 (12%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQ---PPATSPSTSPTSHAPSANPP--------- 175
           PP  +    + +      +  +P  A     PPA++P  +P    P              
Sbjct: 371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQ 430

Query: 176 --KGSSPTPATSPSTSSPYPP--KGYSPVPATSPSTSPSSHAPS---PYPPKGYSPVPA- 227
             +G++    + P+ +S   P       + +  P+ S    AP+    Y  K  +PV   
Sbjct: 431 RAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVK 490

Query: 228 TSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPS 261
             P  +P + +    +  T    A   + +    
Sbjct: 491 KEPVATPKALKKALEHEKTPELAAKLAAEAIERD 524

Length = 647

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 248 LSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPS 307
           L P P   P+  P++  P+   PT   PAP T P  + ++  P        + PP   P 
Sbjct: 360 LVPVPAPQPAK-PTAAAPSPVRPT---PAPSTRPKAAAAANIPPKEPVRETATPPPVPPR 415

Query: 308 TSPPAVPSSPGNAPSLAPSNSSNPAGGT-PPPSPSGSQTSGSQTSSAV 354
              P VP +P +AP L  +           PP+P   +         V
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463

Length = 585

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 207 TSPSSHAPSPYPPKGYSPVP-ATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPP 265
           T+ +  + +         VP  TS +T P+++ +PAA   T  +P    +P+ + +  P 
Sbjct: 144 TTMADQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDT--TPTNSQTPAVATAPAPA 201

Query: 266 AANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSP-PPGTSPSTSPPAVPSS 316
                  +      +  T+ +  P A   P G +P P   +  ++P A P++
Sbjct: 202 VDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 189 SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGL 248
           S+         VP  + +T+  +  P+P  P   +P  + +P+ + + + +        +
Sbjct: 151 SAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVV 210

Query: 249 SPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
           +P+   +  T+ +  P A   P G +P P  +     S+     NA
Sbjct: 211 APSQ-ANVDTAATPAPAAPATPDGAAPLP--TDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 34/198 (17%), Positives = 52/198 (26%), Gaps = 29/198 (14%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANP-PKGSSPTPATSP 186
             P                 +   P     + S   S      +  P P+ ++P+ AT  
Sbjct: 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPA 505

Query: 187 STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPS-------------TS 233
           +      P   S   A + +  P+  A  P P        A   +             +S
Sbjct: 506 AVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSS 565

Query: 234 PSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAAN 293
              +++ AA  P     A             PAA       P P    +T  +    AA 
Sbjct: 566 DRGARAAAAAKPAAAPAAA----------PKPAAPRVAVQVPTPRARAATGDAPPNGAAR 615

Query: 294 APTGVSPPPGTSPSTSPP 311
           A          S    PP
Sbjct: 616 A-----EQAAESRGAPPP 628

Length = 830

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 44/210 (20%), Positives = 64/210 (30%), Gaps = 11/210 (5%)

Query: 150 PSPATQPPATSPSTSPT-SHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTS 208
           P+P   P    P TSPT S   S+ P    +P P   PS +   P         ++P   
Sbjct: 565 PAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQW 624

Query: 209 PSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAAN 268
           P    P P  P    P+              P  + P  +   P     T     P    
Sbjct: 625 PMPLRPIPMRPLRMQPITFNVLV-------FPTPHQPPQVEITPYKPTWTQIGHIP---Y 674

Query: 269 APTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNS 328
            P+            +P +  P   APT + PP         PA  +     P+ AP  +
Sbjct: 675 QPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRA 734

Query: 329 SNPAGGTPPPSPSGSQTSGSQTSSAVSTPL 358
             PA       P  +    ++  +A     
Sbjct: 735 RPPAAAPGRARPPAAAPGRARPPAAAPGRA 764

Length = 991

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 20/154 (12%)

Query: 131 PSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSS 190
             + P  + P  +   P S +P   PP    S +P S+ P++NPP       +  P +++
Sbjct: 413 GYSNPGNSNPGYNNA-PNSNTPYNNPPN---SNTPYSNPPNSNPPY------SNLPYSNT 462

Query: 191 PYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSP 250
           PY     S  P +S     S++  +      Y    A  P+ +  ++  PAAN   G   
Sbjct: 463 PYSNAPLSNAPPSSAKDHHSAYHAA------YQHRAANQPAANLPTANQPAANNFHG--- 513

Query: 251 APGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTS 284
           A G S     +S+ P  +AP G + A    P+  
Sbjct: 514 AAGNSVGNPFASR-PFGSAPYGGNAATTADPNGI 546

Length = 1560

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 2/124 (1%)

Query: 234 PSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAAN 293
                  A  A    + AP  + +   ++  PAA AP   + AP  + +  P+  P  A 
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAA-AAAPAPAAAPQPAPAPAPAP 439

Query: 294 APTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSA 353
           AP   +       + SPP   +     P+ AP+ +  P     P  P+    + +  + A
Sbjct: 440 APPSPAGNAPAGGAPSPPPAAAPSA-QPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498

Query: 354 VSTP 357
               
Sbjct: 499 APAA 502

Length = 824

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 47.4 bits (112), Expect = 8e-06
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 25/126 (19%)

Query: 186 PSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAP 245
           P    PY P  ++  P ++ ST   S A S            T  S SPS+  +P+ + P
Sbjct: 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAASSN----------TTFSSDSPSTVVAPSTSPP 600

Query: 246 TGLSPAPGTSPST--SPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPG 303
            G   +P  +PS   SPS+ PPA++               SPS+ P +  +   V+    
Sbjct: 601 AGHLGSPPATPSKIVSPSTSPPASHL-------------GSPSTTPSSPESSIKVASTET 647

Query: 304 TSPSTS 309
            SP +S
Sbjct: 648 ASPESS 653

Length = 670

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 47/200 (23%), Positives = 61/200 (30%), Gaps = 13/200 (6%)

Query: 126  ERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS 185
            ERPP P   PP   P P  P P  P P   PP            P+ +P     P+ A  
Sbjct: 2906 ERPPQPQAPPPPQ-PQPQPPPPPQPQPPPPPPPRPQPPLA----PTTDPAGAGEPSGAVP 2960

Query: 186  PSTSSPYPPKGYSPVPATSPSTSPSSHAP-SPYPPKGYSPVPATSPSTSPSSSQSPAANA 244
                    P   +      P  +PS  AP S  PP     +   S   S  +        
Sbjct: 2961 QPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPP 3020

Query: 245  PTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGT 304
            P  L        +  P      ++A +        S   +    PP  + P    P P T
Sbjct: 3021 PVSL------KQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPAT 3074

Query: 305  SPSTSPPAVPSSPGNAPSLA 324
             P       PSS    P L+
Sbjct: 3075 -PEAGARESPSSQFGPPPLS 3093

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 7/175 (4%)

Query: 122 VVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPT 181
           + L  R    S     +  P  A S  SP   +  P+ S   S  + +        SS  
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSR 322

Query: 182 PATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPA 241
            ++S STSS       S     +  +   S + SP P +   P   +SP   P  S++P+
Sbjct: 323 ESSSSSTSSS------SESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376

Query: 242 ANAPTGLSPAP-GTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAP 295
           + A +   P       + +  ++   A           +      +S    A  P
Sbjct: 377 SPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP 431

Length = 1352

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 25/120 (20%), Positives = 34/120 (28%), Gaps = 10/120 (8%)

Query: 227 ATSPSTS-PSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSP 285
           A  P+   P     P + AP   + A     +     Q PA   P   + AP  +P+   
Sbjct: 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPP--ASAPQQAPA--V 413

Query: 286 SSQPPAANA----PTGVSPPPGTSPSTSPPAVPSSPGNAPS-LAPSNSSNPAGGTPPPSP 340
                 +               T    S PA  S      S L    S  PA      +P
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473

Length = 647

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 14/132 (10%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
           R P     P  T+P        + + +  P  +S +  P++   SA  P G+ PT +  P
Sbjct: 373 RGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSA-PQSATQPAGTPPTVSVDP 431

Query: 187 STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS--SQSPAANA 244
             + P  P          PST+P +  P+ +  +   PV +   S  PS+       A  
Sbjct: 432 PAAVPVNP----------PSTAPQAVRPAQFKEEKKIPV-SKVSSLGPSTLRPIQEKAEQ 480

Query: 245 PTGLSPAPGTSP 256
            TG      T  
Sbjct: 481 ATGNIKEAPTGT 492

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 133 TGPPTTKPPPHA-PSPKSPSPATQPP-ATSPSTSPTSHAPSANPPKGSSPTPATSPSTSS 190
                  P  H  P    P+ A QP  A + S SP+  + +A P    +P  AT P+ + 
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS---APQSATQPAGTP 424

Query: 191 PYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQS 239
           P           +    +     P    P+   P         P S  S
Sbjct: 425 P---------TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 27/167 (16%)

Query: 183 ATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAA 242
           A  P +++ Y    YS    ++ + S +  + + Y   G S         +  +S +P  
Sbjct: 380 AGGPHSNASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNS----NPGYNNAPNSNTPYN 435

Query: 243 NAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT------ 296
           N P           S +P S PP +N P    P   T  S +P S  P ++A        
Sbjct: 436 NPPN----------SNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYH 485

Query: 297 ------GVSPPPGTSPSTSPPAV-PSSPGNAPSLAPSNSSNPAGGTP 336
                   + P    P+ + PA          S+    +S P G  P
Sbjct: 486 AAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAP 532

Length = 1560

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 37/227 (16%), Positives = 62/227 (27%), Gaps = 5/227 (2%)

Query: 123 VLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTP 182
           V+  +   P  G     PPP +P     +        SPST+ +     +         P
Sbjct: 520 VVSIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDP 579

Query: 183 ATSPSTSSPYP-PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPA 241
               +T       +G + V ++      +S  P   P     P      + S S   +  
Sbjct: 580 FAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAAR 639

Query: 242 ANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPP 301
                  + +    PS       P +   + L     ++ ST      P      G    
Sbjct: 640 ----NAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAG 695

Query: 302 PGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGS 348
            GT  +++     +  G            P         S S   GS
Sbjct: 696 GGTESASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSASSPGGS 742

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 47/212 (22%), Positives = 64/212 (30%), Gaps = 20/212 (9%)

Query: 142  PHAPSPKSPSPATQPPATSPSTSPTSHAPS--ANPPKGSSPTPATSP--STSSPYPPKGY 197
            P AP  + P+ A  P A   +  P    P     PP  S   PA  P      P  P+  
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534

Query: 198  SPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPA------ 251
            + +       S  +  P P       P+P  +P  +P  S  P   AP    PA      
Sbjct: 2535 TWIRGLEELASDDAGDPPP-------PLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRAR 2587

Query: 252  -PGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSP 310
             P   P ++    P            P   P  + +  PP  +     + P    P T P
Sbjct: 2588 RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVP 2647

Query: 311  PAVPSSPGNAPSLA--PSNSSNPAGGTPPPSP 340
            P        AP     P  +          SP
Sbjct: 2648 PPERPRDDPAPGRVSRPRRARRLGRAAQASSP 2679

Length = 3151

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 56/252 (22%), Positives = 90/252 (35%), Gaps = 9/252 (3%)

Query: 128 PPPPSTGP-PTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
           P      P   T  P    +P   + A         +SPTS  P    P  S  TP ++ 
Sbjct: 555 PQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPG--IPSSSHSTPRSNS 612

Query: 187 STSSPYP----PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAA 242
           ++++P      P G   +   +PS   ++H  +  P  G       S   + S+S+ P  
Sbjct: 613 TSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGE 672

Query: 243 NAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPP 302
              T   P P  +  ++PS Q  A    T       ++   +  S   A+ +P       
Sbjct: 673 VHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEGAF 732

Query: 303 GTSPSTSPPAVPSSPGNAPSLAPSNSSNPAG--GTPPPSPSGSQTSGSQTSSAVSTPLSL 360
            T+P  +   +P S  +      + +S P        P P       S  S  V    SL
Sbjct: 733 RTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHPDHSNLSMLVLQWASL 792

Query: 361 GLLGVSLVLGLV 372
            +L + L+L LV
Sbjct: 793 SVLTLLLLLVLV 804

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 199 PVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPST 258
           PVPA  P+  P++ APSP  P    P P+T P  + +++  P         P   T+   
Sbjct: 362 PVPAPQPAK-PTAAAPSPVRPT---PAPSTRPKAAAAANIPPK-------EPVRETATPP 410

Query: 259 SPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPG 303
               +P A   P     AP  + +  P  + P    P     PP 
Sbjct: 411 PVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPP----APPK 451

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 126 ERPPPPSTGPPTTKPPPHAPS-PKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
                PS  P ++   P  PS P+ PS  +        +S  S  P  +P   ++P+P  
Sbjct: 179 PASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPP 238

Query: 185 SPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSP 224
            P+   P P +   P+    P+   +S  P+P        
Sbjct: 239 GPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 16/82 (19%), Positives = 28/82 (34%)

Query: 263 QPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPS 322
            P +  APT  + A   + S   ++    A A    +PP   +P+  P    ++   A  
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 323 LAPSNSSNPAGGTPPPSPSGSQ 344
            AP  ++  A            
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 39/203 (19%), Positives = 53/203 (26%), Gaps = 14/203 (6%)

Query: 140 PPPHAPSPKSPSPATQPPATSPSTSPTSHAPSAN--PPKGSSPTPATSPSTSSPYP-PKG 196
            P   P P   +P +QP   +P+    S          +  +P     P    P   P  
Sbjct: 129 APKPEPQP-PQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPR 187

Query: 197 YSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPA-ANAPTGLSPAPGTS 255
            +  P   P   P  +   P             P+ S + +Q P     P    P     
Sbjct: 188 QAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ 247

Query: 256 PSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPP-GTSPSTSPPAVP 314
                   PP    P      P       P +QPP  N PT     P G +    PP  P
Sbjct: 248 FPGLSQQMPPPPPQPPQQQQQPPQ-----PQAQPPPQNQPTPHPGLPQGQNAPLPPPQQP 302

Query: 315 SSPGNAPSLAPSNSSNPAGGTPP 337
                 P +              
Sbjct: 303 QLL---PLVQQPQGQQRGPQFRE 322

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 19/133 (14%)

Query: 142 PHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVP 201
           P    P  P      P ++ ST   S A S       SP+   +PSTS   PP G+   P
Sbjct: 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTS---PPAGHLGSP 607

Query: 202 ATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPS 261
             +PS   S   PS  PP  +   P+T+PS+  SS +  +             + + SP 
Sbjct: 608 PATPSKIVS---PSTSPPASHLGSPSTTPSSPESSIKVAS-------------TETASPE 651

Query: 262 SQPPAANAPTGLS 274
           S    A+  + +S
Sbjct: 652 SSIKVASTESSVS 664

Length = 670

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKS---PSPATQP-PATSPSTSPTSHAPSANPPKGSSPTPA 183
            P  +   P   P P A +P +   P+PA  P PA +P+ +P   +P+ N P G +P+P 
Sbjct: 398 APSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPP 457

Query: 184 TSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAAN 243
            + + S+        P PA + +  P++ AP+P PP   +P  A +   +P++       
Sbjct: 458 PAAAPSAQ-------PAPAPAAAPEPTA-APAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509

Query: 244 A 244
           A
Sbjct: 510 A 510

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 9/80 (11%), Positives = 22/80 (27%)

Query: 126 ERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS 185
               P +             +  +      P    P+ +  +  P       ++  PA  
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99

Query: 186 PSTSSPYPPKGYSPVPATSP 205
           P+ ++   P   +     +P
Sbjct: 100 PAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 14/106 (13%)

Query: 260 PSSQPPA-------ANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPA 312
           P+S  P+           +  +P    + + + +S P AA A    + P    P+ + PA
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA 81

Query: 313 VPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPL 358
            P  P  A        +  A    PP+ + +    +       TPL
Sbjct: 82  APPKPAAAA-------AAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 233 SPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPA- 291
           S +S QS   +  T   PA   +P+    + P  +  P   +           +   P+ 
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQ 214

Query: 292 --ANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNS 328
              +     +P    +P  + P      G +   A  N+
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 22/230 (9%)

Query: 139  KPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYS 198
            KP P   + K+    T       S   T +      PKG +     +P+ +     +   
Sbjct: 1204 KPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEI 1263

Query: 199  PVPA---------TSPSTSPSSHAPSPYPP--KGYSPVPATSPSTSPSSSQSPAANAPTG 247
                         ++P+ S          P  +  +     +  +  S S     +    
Sbjct: 1264 LDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVE 1323

Query: 248  LSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPP---GT 304
            +S A             PAA      +  P  +    P++        T +  P    G 
Sbjct: 1324 VSLAERLKKKGGRK---PAAANKKA-AKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGI 1379

Query: 305  SPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAV 354
            SP      + +SP N  S +          T   + S    SGS +S   
Sbjct: 1380 SPEKKVRKMRASPFNKKSGSVLGR----AATNKETESSENVSGSSSSEKD 1425

Length = 1465

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 30/117 (25%), Positives = 37/117 (31%), Gaps = 19/117 (16%)

Query: 181 TPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSP 240
            P  +P  + P         P  +PST P + A +  PPK      AT P   P     P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR----P 416

Query: 241 AANAPTGLSPAPGTSPS--TSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAP 295
            A       P P T  S      +  P    P    PAP       P  +  A  A 
Sbjct: 417 VA------PPVPHTPESAPKLTRAAIPVDEKPKYTPPAP-------PKEEEKALIAD 460

Length = 585

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 18/103 (17%), Positives = 31/103 (30%)

Query: 235 SSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
            +     A AP+             P+++  AA+       +  ++   + +  P  A A
Sbjct: 77  DAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAA 136

Query: 295 PTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPP 337
             G +P P   P+T             S  P   S P      
Sbjct: 137 RDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAG 179

Length = 226

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 146 SPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSP 205
           S  S S A  P +   +T PT   P    P+G++P    +PS+++P  P   +P  A SP
Sbjct: 379 SAPSGSAAEGPASGGAATIPT---PGTQGPQGTAPAAGMTPSSAAPATP---APSAAPSP 432

Query: 206 STSPSSHAPSPY----PPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPST 258
                   P+P     PP+    +P  SP      S + A++AP  L     T+  T
Sbjct: 433 RVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHT 489

Length = 624

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 130 PPSTGPPTTKPP----PHAPSPKSPSPATQPPATSP--STSPTSHAPSANPPKGSSPTPA 183
           P ++ P     P    P+   P S +P + PP ++P  S  P S+ P +N P  ++P   
Sbjct: 417 PGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAP--- 473

Query: 184 TSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAAN 243
             PS++  +    Y        +  P+++ P+   P   +   A   S     +  P  +
Sbjct: 474 --PSSAKDH-HSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGS 530

Query: 244 APTGLSPAPGTSPSTS 259
           AP G + A    P+  
Sbjct: 531 APYGGNAATTADPNGI 546

Length = 1560

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 193 PPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTS-PSSSQSPAANAPTGLSPA 251
           P  G +  P+ S +  P+S   +  P  G      T+P+     SS +PA  AP+  +P+
Sbjct: 373 PSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSA-APS 431

Query: 252 PGTSPSTSPSSQPPAANAPTGLSPAPGTSPST-SPSSQPPAANAPTGVSPPPGTSPST 308
           P      +P + P +   P      P  SP   +P S   A++AP  +  P  T+  T
Sbjct: 432 PRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHT 489

Length = 624

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 64/244 (26%), Positives = 87/244 (35%), Gaps = 20/244 (8%)

Query: 121 VVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSP 180
              L    PPP+       PP  +P    P+P  Q P+     S    APS +P +  SP
Sbjct: 186 GAALAPSAPPPTPSAQAV-PPQGSPIAAQPAPQPQQPSPLSLIS----APSLHPQRLPSP 240

Query: 181 TPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSP 240
            P   P T+S   P    P   +S     S H P P  P      P      S +  Q P
Sbjct: 241 HPPLQPQTASQQSP---QPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQ-P 296

Query: 241 AANAPTGLSPAPGTSPSTSPSSQPPAANAPTG--------LSPAPGTSPSTSPSSQPPAA 292
              A + + P P  S +   S  PP+ +A           L PAP       P + P   
Sbjct: 297 FGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQ 356

Query: 293 NAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNS---SNPAGGTPPPSPSGSQTSGSQ 349
                   PP     +  P +PS+    P+L P +S    +P    PPP     Q+   Q
Sbjct: 357 LPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQ 416

Query: 350 TSSA 353
           +  A
Sbjct: 417 SVPA 420

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 235 SSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
           S   S    +    S A G +   + +   P    P G +PA G +PS++  + P  + A
Sbjct: 370 SLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAA 429

Query: 295 PTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAV 354
           P+     P      +PPA P S            ++P  G P    S S    +    + 
Sbjct: 430 PS-----PRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSD 484

Query: 355 STP 357
           +  
Sbjct: 485 TAE 487

Length = 624

>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 53/246 (21%), Positives = 79/246 (32%), Gaps = 17/246 (6%)

Query: 126 ERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS 185
            R             PP     K    + +  A +   +  S         G     + S
Sbjct: 20  PRKSDAFV--SKQLLPPRRLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIFSSFS 77

Query: 186 PSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPAT-SPSTSPSSSQSPAANA 244
              SSP   +  +     + S S +S   S     G    PA+ S S +PSS+QS   + 
Sbjct: 78  ---SSPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSG 134

Query: 245 PTGLSPAPGTS----PSTSPSSQPPAAN------APTGLSPAPGTSPSTSPSSQPPAANA 294
           P   SP         PS+S     P         +  G   A       S  SQ     +
Sbjct: 135 PGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPS 194

Query: 295 PTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAV 354
           P        +S +++  + PS   N+   + S  S P   T       S +SG+   S+ 
Sbjct: 195 PH-FRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSN 253

Query: 355 STPLSL 360
            TP S 
Sbjct: 254 ITPSSS 259

Length = 1175

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 7/164 (4%)

Query: 201 PATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSP 260
           P T P   P + AP+       +   +T    SP+   SP    P+   P P   P+  P
Sbjct: 67  PPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPP---PTPPP 123

Query: 261 SSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNA 320
           +S PP  +    LS       S  P        A    +     + S+   A+P S    
Sbjct: 124 ASPPP--SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEE 181

Query: 321 PSLAPSNSSNPAGGTPPPS--PSGSQTSGSQTSSAVSTPLSLGL 362
            + APS+       + PP+          S  S++ S+P     
Sbjct: 182 TARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPG 225

Length = 1352

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 218 PPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAP 277
           P KG   +P        S++ +P  +A +  +     SPST  +   P+ + P G   +P
Sbjct: 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVA---PSTSPPAGHLGSP 607

Query: 278 GTSPST--SPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAP 321
             +PS   SPS+ PPA++     SP    S   S   V S+   +P
Sbjct: 608 PATPSKIVSPSTSPPASHLG---SPSTTPSSPESSIKVASTETASP 650

Length = 670

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 34/189 (17%), Positives = 50/189 (26%), Gaps = 5/189 (2%)

Query: 167 SHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPV---PATSPSTSPSSHAPSPYPPKGYS 223
              P   P + +  +   SP  S              P  S S + S      YPP+   
Sbjct: 2   PGKPRGQPGRWNYDSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETG 61

Query: 224 PVPATSPSTSPSSSQSPAANAPTGLSPAPGT-SPSTSPSSQPPAANAPTGLSPAPGTSPS 282
                + ST  +  + P     T   P     S    P   P       G S     + S
Sbjct: 62  SGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADS 121

Query: 283 TSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSG 342
           TSP         P  ++P   ++ S+   +        P        N     P      
Sbjct: 122 TSPRFLYQVNF-PVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKH 180

Query: 343 SQTSGSQTS 351
                S+ S
Sbjct: 181 KTHKRSEFS 189

Length = 580

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 127 RPPPPSTGPPTTKP--PPHAPSPKS-PSPATQPPATSPSTSPTSHAPSANPPKGSSPTPA 183
            P P             P A  P+   + A   PA +   +  + A    PP    P   
Sbjct: 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF 506

Query: 184 TSPSTSSPYP-PKGYSPVPATSPSTSPSSHA-PSPYPPKGYSPVPATSPSTSPSSSQSPA 241
            SP+ + P   P G+       P+T+    A  +  P    +P P  + +T P  +  P 
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566

Query: 242 ANAPTGLSPA 251
             + +GL   
Sbjct: 567 RASASGLPDM 576

Length = 700

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 5/132 (3%)

Query: 225 VPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTS 284
             A+  S S S   S   ++      +     STS SS+P   NAP     +     ++S
Sbjct: 1   RAASVSSGSTSGDASSPRSSSRRRLSSS--FLSTSASSRPRRLNAPASPPSSSPARNTSS 58

Query: 285 PSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGS- 343
            SS   +   P   S   G   S        SP  A SL  S ++    G+  PS S   
Sbjct: 59  SSSFGLSKQRP--SSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRT 116

Query: 344 QTSGSQTSSAVS 355
            +S   + +  S
Sbjct: 117 TSSDLSSGNGPS 128

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 240 PAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVS 299
           P    PT  +P+P   P+ +PS++P AA A    +  P   P     +  P    P  V+
Sbjct: 366 PQPAKPTAAAPSPVR-PTPAPSTRPKAAAA----ANIPPKEP--VRETATPPPVPPRPVA 418

Query: 300 PPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPS 339
           PP    P T   A   +    P       + PA   PP  
Sbjct: 419 PPV---PHTPESAPKLTRAAIPVDEKPKYTPPA---PPKE 452

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 218 PPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAP 277
           P    +P  A + + + +S+ + A  A    +PAP   P+ +  + PP         PA 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAP-APPAAAAPAAPPK--------PAA 88

Query: 278 GTSPSTSPSSQPPAAN--APTGVSPPPGTSPSTSPPA 312
             + + +P++ P AA   AP   +     +P     A
Sbjct: 89  AAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 235 SSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
           S+  S  +     L  +  T P+T+P+   P    PT  S  P  + + +P+   P  NA
Sbjct: 151 SAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTN-SQTPAVATAPAPAV-DPQQNA 208

Query: 295 PTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGS 343
               S     + +T  PA P++P  A  L        AG + P +   +
Sbjct: 209 VVAPSQANVDTAATPAPAAPATPDGAAPLPTDQ----AGVSTPAADPNA 253

Length = 331

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 146 SPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSP 205
              + +P     A + + S  + AP+A  P  ++P PA   + +   PPK  +   A + 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAP--AAPAPAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 206 STSPSSHAPSPYPPKGYSPVPATSP 230
             +P + A     P   +     +P
Sbjct: 96  PAAPPAAAA-AAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 155 QPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAP 214
            P +T+  T+  + A +A     ++P      + +   P       PA  P  + ++ A 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA---AAPAAPPKPAAAAAAA 93

Query: 215 -SPYPPKGYSPVPATSPSTSPSSSQ---SPAA 242
            +P  P   +   A + +            AA
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 31/159 (19%), Positives = 44/159 (27%), Gaps = 18/159 (11%)

Query: 201 PATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPST-- 258
            A  P        P P P +    +PA       + + SPAAN P   +   G +  T  
Sbjct: 54  QAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQ 113

Query: 259 SPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPG 318
           +   Q      P  ++  P  SP   P+ Q                      PA    P 
Sbjct: 114 TEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQL----------QQRYGAPASGQLPS 163

Query: 319 NAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
              S   ++ S              +T   QT  A    
Sbjct: 164 QQQSAQKNDES------QLQQQPNGETPPQQTDGAGDDE 196

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTS-PTSHAPSANPPKGSSPTPA 183
               P P T  P    P    +P S +PAT  P+ +PS   P   AP A P  G  P PA
Sbjct: 394 AATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPA 453

Query: 184 TSPSTSSPYP--PKGYSPVPATSPSTSPSSHAPSPYPPKG 221
                +SP P  P   +      P+    S   + + P G
Sbjct: 454 PRMPEASPVPGAPDSVASASDAPPTLGDPS-DTAEHTPSG 492

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 18/147 (12%)

Query: 199 PVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPST 258
           PV +  PS   +S           S   AT P+        P    P G +PA G +PS+
Sbjct: 367 PVESLRPSGGGASAPSGSAAEGPASGGAATIPT--------PGTQGPQGTAPAAGMTPSS 418

Query: 259 SPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPG 318
           +     PA  AP+  +P+P      +P + P +   P      P  SP    P   +S  
Sbjct: 419 AA----PATPAPSA-APSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASAS 473

Query: 319 NAPSLAPSNSSNPAGGTPPPSPSGSQT 345
           +AP      +      T   +PSG +T
Sbjct: 474 DAP-----PTLGDPSDTAEHTPSGPRT 495

Length = 624

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 272 GLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNP 331
           G++P+P  SP     +  P    P     P       + PA   SP +AP+        P
Sbjct: 379 GVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPT--------P 430

Query: 332 AGGTPPPSPSGSQTSGSQTSSAVSTPLSLGL 362
               P    +    S   ++         G+
Sbjct: 431 EQQPPVARSAPLPPSPQASAPRNVASGKPGV 461

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 24/124 (19%), Positives = 32/124 (25%), Gaps = 7/124 (5%)

Query: 143 HAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPA 202
                 +PSPA  P     +  P    P  +P       P   P+          SP  A
Sbjct: 375 RNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELP-------SPASA 427

Query: 203 TSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSS 262
            +P   P     +P PP   +  P    S  P              +           SS
Sbjct: 428 PTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASS 487

Query: 263 QPPA 266
              A
Sbjct: 488 SDAA 491

Length = 620

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 41/233 (17%), Positives = 57/233 (24%), Gaps = 23/233 (9%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
           P P TG P   P P     +S           P   P         P    P      + 
Sbjct: 364 PGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAP 423

Query: 189 SSPYPPKGYSPVPA-TSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTG 247
           +   P +     PA   P    +  A              T  +    ++Q P    P  
Sbjct: 424 APEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQP 483

Query: 248 LSPAPGTSP-----STSPSSQP-------PAANAPTGLSPAPGTSPSTSPSSQPPAANAP 295
           +   P   P      T P+  P           A      A    P   P  +P    + 
Sbjct: 484 VEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSS 543

Query: 296 TGVSPPPGTSPSTSPPAVP----------SSPGNAPSLAPSNSSNPAGGTPPP 338
                     P  +  AV            + G A ++A    S    G P P
Sbjct: 544 LKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRP 596

Length = 1355

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 50/202 (24%), Positives = 67/202 (33%), Gaps = 13/202 (6%)

Query: 160 SPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPP 219
            P  S  +  P   P K  +P   + P    P  PK   P P      SP +      PP
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRP-----LSPYTAYEDLKPP 383

Query: 220 KGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTG-LSPA-- 276
               P P +S   S  S  + A  A   + P+PG++ +             T  LSP   
Sbjct: 384 TSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYAR 443

Query: 277 -PGTSPSTSPSSQPPAANAPTGVSPPPGT-SPSTSPPAVPSSPGNAPSLAPSNSSN---P 331
                P TSPS   P   +P+  S       P T+P    +     P       S     
Sbjct: 444 YEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVY 503

Query: 332 AGGTPPPSPSGSQTSGSQTSSA 353
               PP SPS +   G    S+
Sbjct: 504 DDLKPPTSPSPAAPVGKVAPSS 525

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 262 SQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAP 321
            Q    +  T   PA   +P+    + P  +  P   + P           V  S  N  
Sbjct: 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANV- 217

Query: 322 SLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSL 360
               + +  PA    P   +   T  +  S+  + P +L
Sbjct: 218 --DTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNAL 254

Length = 331

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 249 SPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPST 308
           S    T P    S  PPA      L     T+P  +P   PP A   +  +P    + S+
Sbjct: 518 SNTAKTPPPPQKSPPPPAP--TPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 309 SPPAVPSSPGNAPSLAPSNSS 329
            PP +P  P  +P+   S   
Sbjct: 576 PPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 199 PVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPST 258
               +S STS  + +P     +  S    ++ ++S     +  A+ P+       +S S+
Sbjct: 2   AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61

Query: 259 SPSSQPPAANAPTGLSPAPGTSPS-TSPSSQPPAANAPTGVSPPPGTSPSTSP--PAVPS 315
              S+   ++   G   +   SPS  SPS+      +    S    +SPS S    +   
Sbjct: 62  FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121

Query: 316 SPGNAPSLAPS 326
           S GN PS+   
Sbjct: 122 SSGNGPSVLSF 132

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 30/163 (18%), Positives = 38/163 (23%), Gaps = 5/163 (3%)

Query: 144 APSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPAT 203
           AP               P   PT        P+   P  A +P             V   
Sbjct: 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394

Query: 204 SPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQ 263
            P   P       Y P    P      + +P         AP    P  G +   +   Q
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAG-NAWQAEEQQ 453

Query: 264 PPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
              A   T             P++Q P    P  V   P   P
Sbjct: 454 STFAPQST----YQTEQTYQQPAAQEPLYQQPQPVEQQPVVEP 492

Length = 1355

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 249 SPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPST 308
           +PAP ++   +P+   PAA  P    P P  +P+  P++  PA  AP   +     + S 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPA-RPAAARPAP-APAPPAAAAPPARSA 438

Query: 309 SPPAVPSSPGNAPSL-APSNSSNPAGGT 335
            P A  S+     +  A      PA G 
Sbjct: 439 DPAAAASAGDRWRAFVAFVKGKKPALGA 466

Length = 576

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 21/121 (17%), Positives = 33/121 (27%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
           +  P            P H   P   S   + P   P  +      +  P + +      
Sbjct: 72  NHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQ 131

Query: 185 SPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANA 244
                 P  P      P  +P+  P   AP P         P  +P   P +  +P  + 
Sbjct: 132 PAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDK 191

Query: 245 P 245
           P
Sbjct: 192 P 192

Length = 333

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 41/199 (20%), Positives = 58/199 (29%), Gaps = 9/199 (4%)

Query: 149 SPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTS 208
           +P P     A     +         PP+ ++P  A +P      P   +    A +P   
Sbjct: 256 APPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAP------PDGVWGAALAGAPLAL 309

Query: 209 PSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAAN 268
           P+   P P  P G +             S  P       L       P+ +P S     +
Sbjct: 310 PAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSS--LED 367

Query: 269 APTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNS 328
              G       S  T        A  P    P        + P   S P  AP+  P+ S
Sbjct: 368 LSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPA-S 426

Query: 329 SNPAGGTPPPSPSGSQTSG 347
           + P   TP PS       G
Sbjct: 427 APPPPATPLPSAEPGSDDG 445

Length = 3151

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 53/218 (24%), Positives = 81/218 (37%), Gaps = 4/218 (1%)

Query: 132 STGPPTTKPPPHAPSPKSPSPATQPPATSPS-TSPTSHAPSANPPKGSSPTPATSPSTSS 190
           ST P  T P     S    + +  P  T+P+ TSPT+   S  P   S        +T++
Sbjct: 480 STLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTA 539

Query: 191 PYPPKG-YSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLS 249
             PP G  S   ATSP  +  S   +   P   S  P+   S   +      ++  +   
Sbjct: 540 TSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSA-PSVLTSAVTTGQHGTGSSPTSQQP 598

Query: 250 PAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPS-TSPSSQPPAANAPTGVSPPPGTSPST 308
             P +S ST  S+        T   P  G + +  +PS       +     P PGT+   
Sbjct: 599 GIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQV 658

Query: 309 SPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTS 346
           S P   S+      +  +        T P +PSG +T+
Sbjct: 659 SGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTA 696

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 25/138 (18%)

Query: 216 PYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSP 275
           PY P  ++  P ++ ST P+ S + +    +  SP+   +PSTSP         P G   
Sbjct: 556 PYIPGLFAGNPGSTNST-PTGSAASSNTTFSSDSPSTVVAPSTSP---------PAGHLG 605

Query: 276 APGTSPST--SPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAG 333
           +P  +PS   SPS+ PPA++               SP   PSSP ++  +A + +++P  
Sbjct: 606 SPPATPSKIVSPSTSPPASHL-------------GSPSTTPSSPESSIKVASTETASPES 652

Query: 334 GTPPPSPSGSQTSGSQTS 351
                S   S +  S ++
Sbjct: 653 SIKVASTESSVSMVSMST 670

Length = 670

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 8/135 (5%)

Query: 166 TSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPV 225
            + + S+    G + +P +S            S         +P+S   S       S  
Sbjct: 1   RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSS 60

Query: 226 PATSPSTSPSSSQSPAANAPTGLSPAPGTSPS-TSPSSQPPAANAPTGLSPAPGTSPSTS 284
                   PSS          G   +   SPS  SPS+      +    S +  +SPS S
Sbjct: 61  SFGLSKQRPSSLSR-------GRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRS 113

Query: 285 PSSQPPAANAPTGVS 299
             +     ++  G S
Sbjct: 114 RRTTSSDLSSGNGPS 128

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 42/222 (18%), Positives = 60/222 (27%), Gaps = 24/222 (10%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
             PP          P       P P T  P  +P+            P      P   P 
Sbjct: 342 QTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPV 401

Query: 188 TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPV-PATSPSTSPSSSQSPAANAPT 246
                     +  PA  P  +P+   P+  P    +P  P    +      QS  A   T
Sbjct: 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQST 461

Query: 247 GLSPAPGTSPSTSPSS--QPPAANAPTGLSPAPG---TSPSTSP-------------SSQ 288
             +      P+       QP        + P P    T P+  P               +
Sbjct: 462 YQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRARERE 521

Query: 289 PPAA---NAPTGVSPPPGTSPSTSPPAVPSSP--GNAPSLAP 325
             AA     P  V  P     S   P+V + P    A +++P
Sbjct: 522 QLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP 563

Length = 1355

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 30/121 (24%), Positives = 47/121 (38%)

Query: 221 GYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTS 280
           G  PV A +PS++ + S +   ++    SPA   S  T+ S+    A+A    S     S
Sbjct: 297 GTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPS 356

Query: 281 PSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSP 340
             T P +    A  P  + P P ++  T   +  +    A     S  + PA   P    
Sbjct: 357 DVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPT 416

Query: 341 S 341
           S
Sbjct: 417 S 417

Length = 421

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 35/220 (15%), Positives = 60/220 (27%), Gaps = 16/220 (7%)

Query: 140 PPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSP 199
            P  A   +       P       SP +H  +        P  +T+     P PP  ++ 
Sbjct: 487 KPERAAPEQLFKDLMLPSQMLDRKSPRTHTVNDRGQCFGDPDISTAAMFIIPKPPDSFAN 546

Query: 200 VPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTS 259
           V A +   SP                     +  P  +          ++P       T 
Sbjct: 547 VAAAALYNSP----------------FCMPQTPQPQDAPEQTEALSLVVTPKKKRHKVTD 590

Query: 260 PSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGN 319
               P   +    L  A G +  T      P++ + +    PP        P   + P  
Sbjct: 591 TRITPRTVSRILALRDAVGPAAGTHHQPLHPSSLSASMGFHPPPFRHPFPLPLTVAIPNP 650

Query: 320 APSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLS 359
           +   +      P       +PSGS     + S  +  P +
Sbjct: 651 SLHQSEVFMGYPFQSPHLGAPSGSPPGKDRDSPDLPRPTT 690

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 8/206 (3%)

Query: 163 TSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGY 222
               +   SA+  K S+ + A + S+++  P          + + + ++   S       
Sbjct: 120 NQLGNAGASASITKTSNGSDAATTSSTANTPAAAKVLKANAASAPNTTTGVGSAATTAAI 179

Query: 223 SPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGL-----SPAP 277
           S   AT+P+T+    + P     TG + A     S    +Q  A N    L     +   
Sbjct: 180 SATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVPQNTSML 239

Query: 278 GTSPSTSPSSQPPAANAPTGV--SPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGT 335
              P+ +P  Q     +P     SP    SP  +   + +          +N+ N    +
Sbjct: 240 AQIPNPTPLMQLLNGVSPNNAMASPLNNMSPMRNLNQMGNQNNGGQMTPSANNGNMNNQS 299

Query: 336 PPPSPSGSQT-SGSQTSSAVSTPLSL 360
              S +   T S S  +    TP ++
Sbjct: 300 RENSMNQGMTPSASMINLNNITPANI 325

Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator subunit Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor. Length = 381

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 11/199 (5%)

Query: 144 APSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS------SPYPPKGY 197
           A S    + A   PA    T P +   +      ++         S      +    +  
Sbjct: 58  ARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQP 117

Query: 198 SPVPATSPSTSPSSHAPSPYPPKGYSPVPA---TSPSTSPSSSQSPAANAPTGLSPAPGT 254
             VP  +P+ +P   A  P P        A   T+P    + S  P       L+ AP  
Sbjct: 118 VSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVP 177

Query: 255 SPSTSPSSQPPAANAPTGLSPAPG-TSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAV 313
                       A  P   +      + +     Q          + P    P+  PP V
Sbjct: 178 RAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIV 237

Query: 314 PSSPGNAPSLAPSNSSNPA 332
             +P    +LA   ++ PA
Sbjct: 238 -VAPAAPAALAAVAAAAPA 255

Length = 559

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTP-ATSPS 187
              S     + P    P+P    P      ++P T   +  PS  P K S P P    P+
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 188 TSSPYPPKGYSPVPATS 204
             SP PP   +  P + 
Sbjct: 423 EPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 8/127 (6%)

Query: 223 SPVPATSPSTSPSSSQSPAANAPTGLS---PAPGTSPSTSPSSQPPAANAPTGLS---PA 276
           + +P     TS ++ +   A AP   +   P P  +P+++ S +P  A APT  +     
Sbjct: 24  TNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFD 83

Query: 277 PGTSPSTSPSSQPPAANAPTGVSP--PPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGG 334
           P  +P  + S  P  A AP   +   P      TS      +P +A + A S   +PA  
Sbjct: 84  PAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAH 143

Query: 335 TPPPSPS 341
           T    P 
Sbjct: 144 TQHSPPP 150

Length = 566

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 20/220 (9%)

Query: 122 VVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPT 181
           V+ +     PS      +     P P+  +   Q P  + S        +A P +G +  
Sbjct: 371 VIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASA-------AAMPSEGKTAG 423

Query: 182 PATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPV--PATSPSTSPSSSQS 239
           P ++   +   PP   +P  A + +        +    K         T P    S +++
Sbjct: 424 PVSNQENND-VPPWEDAPDEAQTAA------GTAQTSAKSIQTASEAETPPENQVSKNKA 476

Query: 240 PAANAPTGLSPAPGTSPS-TSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGV 298
                   LS  P  +P   +P+ +          +PA        P +  P  +   G 
Sbjct: 477 ADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPED---GA 533

Query: 299 SPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPP 338
             PP      +P        +  + A     N     PPP
Sbjct: 534 EIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPP 573

Length = 709

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 12/81 (14%), Positives = 30/81 (37%)

Query: 179 SPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQ 238
            P    +P+ ++       S   A   + +P++ AP+P      +  P  + + + +++ 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 239 SPAANAPTGLSPAPGTSPSTS 259
           +    A    +PA        
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 173 NPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPST 232
            P   ++PT A + + ++   P       A +        A +P  P    P  A + + 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP--KPAAAAAAAA 94

Query: 233 SPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANA 269
           +P++  + AA A      A       +P     AA A
Sbjct: 95  APAAPPAAAAAAAP---AAAAVEDEVTPLRGAAAAVA 128

Length = 1228

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 114 QKGQKLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPS-- 171
           Q   + + +       P +T  P         + ++P+ AT P            APS  
Sbjct: 156 QNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA 215

Query: 172 -ANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSS 211
             +     +P    +P  ++P P         ++P+  P++
Sbjct: 216 NVDTAATPAPAAPATPDGAAPLPT---DQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 19/85 (22%), Positives = 35/85 (41%)

Query: 132 STGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSP 191
           +T P TT  P         +  T   AT+P+ +      +   P  ++   A +P+ ++P
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP 228

Query: 192 YPPKGYSPVPATSPSTSPSSHAPSP 216
             P G +P+P      S  +  P+ 
Sbjct: 229 ATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 202 ATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPS 261
           A SP+ SP     +P P      +P       P+  ++P A      SPA   +P   P 
Sbjct: 381 APSPAGSPDVKKKAPEPD-----LPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP 435

Query: 262 SQPPAANAPTGLSPAPGTSPSTSPS 286
               A   P+  + AP    S  P 
Sbjct: 436 VARSAPLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 250 PAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTS 309
           P  GT     P++ P +A  PT   P+P  SP++  S+ P +A      S    T+ +  
Sbjct: 77  PKTGTGKVAPPAATPTSAPTPT---PSPPASPASGMSAAPASAVEEKSPSEESATATAPE 133

Query: 310 PPAVPSSPGNAPSLAPSNSSNPAGGT 335
            P+      + PS     +S    G+
Sbjct: 134 SPS-----TSVPSSGSDAASTLVVGS 154

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 17/87 (19%), Positives = 24/87 (27%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
              P P +   P   P P    P     A    A SP  +    A  A  P  +    A 
Sbjct: 420 AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAA 479

Query: 185 SPSTSSPYPPKGYSPVPATSPSTSPSS 211
                   P    +P    +P+    +
Sbjct: 480 PAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 269 APTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNS 328
           A  G  P     P  +  +  P  +A    SP P  S + + P+ P S        P+ S
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 329 SNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSLGLLGVSLVLGLVSGI 375
            +P    P   PS +  +           + +  +  SL    +  I
Sbjct: 429 VDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS-SLGPSTLRPI 474

Length = 614

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 38/204 (18%), Positives = 63/204 (30%), Gaps = 13/204 (6%)

Query: 141 PPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP-STSSPYPPKGYSP 199
                +  +P+PA Q P    +        SAN         A++     +    +    
Sbjct: 60  SDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVS 119

Query: 200 VPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTS 259
           VP  +P+ +P   A  P P        A +  T+P    + +A      +    T+P   
Sbjct: 120 VPRQAPAAAPVRAASIPSPAAQAL-AHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPR 178

Query: 260 PSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGN 319
              Q P   AP    P P    +   +    A +    +           P  +P  P  
Sbjct: 179 APVQAPVVAAPA---PVP-AIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILP--PAA 232

Query: 320 APSL-----APSNSSNPAGGTPPP 338
            P +     AP+  +  A   P P
Sbjct: 233 LPPIVVAPAAPAALAAVAAAAPAP 256

Length = 559

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 6/211 (2%)

Query: 136 PTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPK 195
           P       A +    +    P A +      +  P   P   ++ TP  + S ++  P +
Sbjct: 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAA-MPSE 418

Query: 196 GYSPVPATSPSTS---PSSHAPSPYP-PKGYSPVPATSPSTSPSSSQSPAANAPTGLSPA 251
           G +  P ++   +   P   AP       G +   A S  T+  +   P        +  
Sbjct: 419 GKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAAD 478

Query: 252 PGTSPSTSPSSQP-PAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSP 310
             T    S      P    P   +    T    +P+        P    PP   +    P
Sbjct: 479 NETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPP 538

Query: 311 PAVPSSPGNAPSLAPSNSSNPAGGTPPPSPS 341
               ++P +         +   G     +PS
Sbjct: 539 DWEHAAPADTAGGGADEEAEAGGIGGNNTPS 569

Length = 709

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTS-HAPSANPPKGSSPTPATSP 186
           PP            P   S  + +          S +PT    PS++P   S+PT   SP
Sbjct: 150 PPLQHRKRDAVTASPS--SMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESP 207

Query: 187 S-----TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSS 237
           S     T  P P    +   +T  S++  S   S   P+      +T  S S S +
Sbjct: 208 SNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSSIN 263

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 32/152 (21%), Positives = 44/152 (28%), Gaps = 10/152 (6%)

Query: 193 PPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAP 252
           PP G + V      T        P  P         +   SP+ S +PA       +   
Sbjct: 599 PPYGLADVELDEEDTEDDDAVELPSTP------SMGTQDGSPAPSAAPAGYDIFEFA-GD 651

Query: 253 GTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPA 312
           GT      +S    A     L       PST  +S P    A    +P    SP T+  A
Sbjct: 652 GTGAPHPVASGSNGAQHADPLGDLFSGLPSTVGASSPAFQAASGSQAPA---SPPTAASA 708

Query: 313 VPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQ 344
           +     N           P    P  +   +Q
Sbjct: 709 IEDLFANGMGSGSQTVPLPISAAPQSADRDTQ 740

Length = 746

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
             P   T  P+T+P   A +   P    +  AT P   P    P A P   +  +     
Sbjct: 376 PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR---PVAPPVPHTPESAPKLT 432

Query: 187 STSSPYPPKGYSPVPATSPSTSPSSHAP 214
             + P   K     PA       +  A 
Sbjct: 433 RAAIPVDEKPKYTPPAPPKEEEKALIAD 460

Length = 585

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 20/130 (15%)

Query: 174 PPKGSSPTP---ATSPSTSSPYPPKGYSPVPATSPSTSPS-SHAPSPYPPKGYSPVPATS 229
           P KG    P   A +P +++  P    +    T  S SPS   APS  PP G+   P  +
Sbjct: 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPAT 610

Query: 230 PSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQP 289
           PS   S S SP    P     +P T+PS+  SS   A+            + + SP S  
Sbjct: 611 PSKIVSPSTSP----PASHLGSPSTTPSSPESSIKVAS------------TETASPESSI 654

Query: 290 PAANAPTGVS 299
             A+  + VS
Sbjct: 655 KVASTESSVS 664

Length = 670

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 247 GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
           G++P+P  SP     +  P    P      PG +   +P ++P    +P     P    P
Sbjct: 379 GVAPSPAGSPDVKKKAPEPDLPQP---DRHPGPAKPEAPGARPAELPSPASAPTPEQQPP 435

Query: 307 STSPPAVPSSPGNAPSLAPSNSS 329
                 +P SP  +     ++  
Sbjct: 436 VARSAPLPPSPQASAPRNVASGK 458

Length = 620

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 147 PKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPS 206
           PK+ +    PPA +P+++PT   P+ +PP  +SP    S + +S    K  S   AT+ +
Sbjct: 77  PKTGTGKVAPPAATPTSAPT---PTPSPP--ASPASGMSAAPASAVEEKSPSEESATATA 131

Query: 207 -TSPSSHAPSPYP 218
             SPS+  PS   
Sbjct: 132 PESPSTSVPSSGS 144

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 16/137 (11%)

Query: 140 PPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSP 199
           P  H       +  +   A +   S      S  P +G  P+            P+  S 
Sbjct: 151 PLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPS----------SSPRSLSN 200

Query: 200 VPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTS 259
                  ++       P P    +   +T  S++  S  S  A      +P  G S  ++
Sbjct: 201 PTTLESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLA------TPRSGESFRST 254

Query: 260 PSSQPPAANAPTGLSPA 276
           P+S   + N  +GL  A
Sbjct: 255 PTSGSSSINPVSGLDEA 271

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 29/166 (17%), Positives = 44/166 (26%), Gaps = 17/166 (10%)

Query: 137 TTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKG 196
                    +PK  S        +   +        +      P PA+ P    P P + 
Sbjct: 263 MLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLP----PPPVRR 318

Query: 197 YSPVPATSPSTSPS-SHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTS 255
                  +    P  +       P    P  +TS   S S+    + +   G S A  +S
Sbjct: 319 PRVKHPEAGKEEPDGARNAEAKEPA--QPATSTSSKGSSSAQNKDSGSTGPGSSLAAASS 376

Query: 256 PSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPP 301
                    P  +  T L   P           P   +AP   S P
Sbjct: 377 FLEDDDFGSPPLDLTTSLRHMPS----------PSVTSAPEPPSIP 412

Length = 418

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 31/239 (12%), Positives = 57/239 (23%), Gaps = 24/239 (10%)

Query: 122 VVLHERPPPPSTGPP---TTKPPPHAPSP----------KSPSPATQPPATSPSTS---P 165
            V  E  P          +++ P    S           K      Q  +         P
Sbjct: 13  AVQPEATPSAGAPTGLQQSSESPTQRASHSLASEGKKNRKKMPKVFQKSSAPRQIQAAPP 72

Query: 166 TSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPS----TSPSSHAPSPYPPKG 221
            +  P+A  P+ SS  P      + P          ++  +     S            G
Sbjct: 73  QALNPTAAAPQ-SSRGPTLRELLALPEDDGETQAPESSPSARRLTRSEGVARHEMEDLAG 131

Query: 222 YSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSP 281
              V   +         + ++++          + S  P++   +A              
Sbjct: 132 RPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAALFKDDEIRQEVDA 191

Query: 282 STSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSP 340
           + S  +     +   G  P      +   P +  S G        N         P SP
Sbjct: 192 ARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTRSAGGRFEGEDENLERN---LQPQSP 247

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 258 TSPSSQPPAANAPTGLSPAP-----GTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPA 312
           T+ + Q  A  +       P      T P+T+P+   P    PT    P   +       
Sbjct: 144 TTMADQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVD 203

Query: 313 VPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
              +   APS A  +++       P +P G+    +   + VSTP
Sbjct: 204 PQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTD-QAGVSTP 247

Length = 331

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 42/240 (17%), Positives = 61/240 (25%), Gaps = 19/240 (7%)

Query: 127 RPPPPSTGPPTTKPPPH--------APSPKSPSPATQPPATSPSTSPTSHAPSANPPKGS 178
            P       P ++              S  S S          ++S      S    +  
Sbjct: 470 PPSKRRVSAPASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSIKELRPR 529

Query: 179 SPTPATSPSTSSPYPPKGYSPV--PATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS 236
                 SP   SP   +    V     SPST+ S               P    +T   +
Sbjct: 530 IGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLT 589

Query: 237 SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT 296
                 N   G S  P  S S+ P + P      + L PA     + S S    A NA  
Sbjct: 590 DNMRGGN-GVGSSVKPKGSASSKPLTGPG-----SDLKPATLNGKTPSSSLVGAARNAGA 643

Query: 297 GVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVST 356
                    PS              +L    +S  +       P    T+G +      +
Sbjct: 644 SSK---VKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTES 700

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 21/121 (17%), Positives = 36/121 (29%)

Query: 142 PHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVP 201
             + S  S S     P +S     +S   S +         A +   SS       S   
Sbjct: 2   AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61

Query: 202 ATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPS 261
                  PSS +      +  SP   +  + +  +     A+     SP+     ++S  
Sbjct: 62  FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121

Query: 262 S 262
           S
Sbjct: 122 S 122

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 11/89 (12%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
           P P  +     K P        P P   P    P       AP A P +  SP  A +P 
Sbjct: 382 PSPAGSPDVKKKAPEPDL----PQPDRHPGPAKPE------APGARPAELPSPASAPTPE 431

Query: 188 TSSPYPPKG-YSPVPATSPSTSPSSHAPS 215
              P        P P  S   + +S  P 
Sbjct: 432 QQPPVARSAPLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 159 TSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYP 218
           T  +    +  PS+   + S+ TP++  +  SP       P   T+ S + +  +     
Sbjct: 295 THGTVPVAAVTPSSAVTQSSAITPSS-AAIPSP----AVIPSSVTTQSATTTQASAVALS 349

Query: 219 PKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPG 278
             G  P   T P T    +  P    P  +S    T  S++ +    A    T L  AP 
Sbjct: 350 SAGVLPSDVTLPGTVALPAAEPVNMQPQPMS-TTETQQSSTGNITSTANGPTTSLPAAPA 408

Query: 279 TSPSTSPSSQ 288
           ++   SP+S+
Sbjct: 409 SNIPVSPTSR 418

Length = 421

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 178 SSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSS 237
           +  T    P   +    +   P PA       +S AP P      +  P ++ S  P  +
Sbjct: 21  NLNTNIPIPELHTSAATQKPDPAPA---PHQAASRAPDP------AVAPTSAASRKPDLA 71

Query: 238 QSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT---GLSPAPGTSPSTSPSSQPPAANA 294
           Q+P   A     PAP  +P  + S  P  A AP       P    + +++  +    A+A
Sbjct: 72  QAPTPAASEKFDPAP--APHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADA 129

Query: 295 PTGV---SPPPGTSPSTSPPA 312
            T      P P      SPP 
Sbjct: 130 GTSAASKKPDPAAHTQHSPPP 150

Length = 566

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 27/176 (15%), Positives = 48/176 (27%), Gaps = 12/176 (6%)

Query: 116 GQKLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPP 175
             +L+  +                  P   S ++ +       T         A  A+  
Sbjct: 247 AYRLLFQIGQLTSSAFMLNSSLPTSAPKRRSRRAGAMRAAAGET---------ADLADDD 297

Query: 176 KGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPS-SHAPSPYPPKGYSPVPATSPSTSP 234
                 P   P++  P P +        +    P  +       P    P  +TS   S 
Sbjct: 298 GSEHSDPEPLPASLPPPPVRRPRVKHPEAGKEEPDGARNAEAKEPA--QPATSTSSKGSS 355

Query: 235 SSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPP 290
           S+    + +   G S A  +S         P  +  T L   P  S +++P     
Sbjct: 356 SAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSI 411

Length = 418

>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related Mg-chelatases [Coenzyme metabolism]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 17/100 (17%)

Query: 291  AANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPP-PSPSGS------ 343
            AA AP   +P    S  T+  +  SS  +A     + S   +G     PS   +      
Sbjct: 1290 AAFAPASATPGAPESVGTTAVSTASSASSATV---TGSDAGSGADSTGPSLGAAGSVTGA 1346

Query: 344  ------QTSGSQTSSAVSTPLSLGLLGVSLVLGLVSGIIF 377
                         S +     S  ++GV  ++ LV    F
Sbjct: 1347 GEGYEMTKEAVSGSESTGMSFS-AIVGVLALVVLVGAGYF 1385

Length = 1388

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 51/230 (22%), Positives = 67/230 (29%), Gaps = 19/230 (8%)

Query: 138 TKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGY 197
             P P  P P+SP    +P  +S     +       P    SP   TS    +P  P   
Sbjct: 216 FTPHPSLPQPQSPL---KPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPASPSSR 272

Query: 198 SPVPATSPSTSPSSHAPSP-YPPKGYSPVPATS-PSTSPSSSQSPAANAPTGLSPAPGTS 255
            P  A     + SS    P    + Y P  + S PS  P+ S +     P   +      
Sbjct: 273 RPSTAQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNKKAKRD 332

Query: 256 PSTSPSSQPPAANAPTGLSPAPGTS--PSTSPS--SQPPAANAPTGVSPPPGTSP----- 306
                 +      A    +   GT   P   PS   Q P +N+P   S     S      
Sbjct: 333 RRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPPSNSPLLSSLADTPSGAAHQP 392

Query: 307 -STSPPAVPSSPGNAPS----LAPSNSSNPAGGTPPPSPSGSQTSGSQTS 351
            S  PPAV        S      P +S  P        PS          
Sbjct: 393 ASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQELGPSVMALLDRDQG 442

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21)

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 224 PVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPST 283
            + A       +S          G +P+   +PS SPS QP +  AP G S   GT+ S 
Sbjct: 213 GLTAACHDEVVASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSA 272

Query: 284 SPSSQP------PAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNP 331
           SP++        P       ++      P       P +    P+ AP   +NP
Sbjct: 273 SPAALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326

Length = 326

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 126 ERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS 185
            RP  P       KPP  +PSP +P+  + P  +S S+ P       +    ++ T A +
Sbjct: 435 TRPLSPYARYEDLKPPT-SPSPTAPTGVS-PSVSSTSSVPA----VPDTAPATAATDAAA 488

Query: 186 PSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSP----VPATSPSTSPSSSQSPA 241
           P  ++  P   Y+      P TSPS  AP        +     V  ++P T+ +  Q  A
Sbjct: 489 PPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHA 548

Query: 242 ANAPTGLSPAP---GTSPSTSPSSQPP 265
              P  LSP        P TSP+  P 
Sbjct: 549 QPKPRPLSPYTMYEDLKPPTSPTPSPV 575

Length = 576

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 123 VLHERPPPPSTGPPTTKPPPHAP-SPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPT 181
           V     PP     P+    P AP S +S +P   P + +  + P   A    PP    P 
Sbjct: 194 VPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253

Query: 182 PATSPSTSSPYPPKGYSPVPATSPSTSPSS 211
            +T+  T         +P P    +    +
Sbjct: 254 LSTAKPTPPSASA---TPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 49/201 (24%), Positives = 64/201 (31%), Gaps = 7/201 (3%)

Query: 148 KSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPST 207
           +S SP+   P  + S S +S       P+G         +  +P  P       A  P  
Sbjct: 148 RSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQG 207

Query: 208 SPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSP----AANAPTGLSPAPGTSPSTSPSSQ 263
           SP +  P+P P +       ++PS  P    SP         +  SP P    S  P S 
Sbjct: 208 SPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSS 267

Query: 264 PPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSL 323
                 P   +   G      PSS PP          PP   PS    A P S       
Sbjct: 268 HHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQ---AQPHSHTPPSQS 324

Query: 324 APSNSSNPAGGTPPPSPSGSQ 344
           A      P     PP+PS   
Sbjct: 325 ALQPQQPPREQPLPPAPSMPH 345

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 13/72 (18%), Positives = 22/72 (30%)

Query: 125 HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
                      P  K P         + A   P    + +  + AP+A P   ++  PA 
Sbjct: 51  AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110

Query: 185 SPSTSSPYPPKG 196
           +       P +G
Sbjct: 111 AAVEDEVTPLRG 122

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 146 SPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYP-PKGYSPVPATS 204
              S +  T PP       P    P   P   + P     P  ++        + +PA S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 205 PSTSPSSHAPSPYPPK 220
               P    P+P P K
Sbjct: 575 SPPPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 172 ANPPKGSS-PTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAP-SPYPPKGYSP-VPAT 228
           A+ P GS+   PA+  + + P P        A +   +PSS AP +P P    SP VP  
Sbjct: 378 ASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWD 437

Query: 229 SPSTSPSSSQSPAANAPT--GLSPAPGTSPSTSPSS-QPPAANAPTGLSPAPGTSPST 283
               +P  S  P   AP     SP PG   S + +S  PP    P+  +    + P T
Sbjct: 438 DAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495

Length = 624

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 33/189 (17%), Positives = 52/189 (27%), Gaps = 10/189 (5%)

Query: 180 PTPATSPSTSSP----YPPKGYSPVPATSPSTSPS-SHAPSPYPPKGYSPVPATSPSTSP 234
           P  +TS +TS      YPP+        + ST  +    P         P    +    P
Sbjct: 39  PLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELP 98

Query: 235 SSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
                       G S     + STSP         P  L+P   ++ S+   S+    + 
Sbjct: 99  PGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNF-PVILAPIGESNSSSEELSEEEEHSR 157

Query: 295 PTGVSPPPGTSPST--SPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSS 352
           P   S            P        +  S     +   A      S     +   + S 
Sbjct: 158 P-PPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGLTKK-AARKRKGSFVFKPSQLKELSG 215

Query: 353 AVSTPLSLG 361
           ++   L L 
Sbjct: 216 SLKNLLHLD 224

Length = 580

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 5/121 (4%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATS----PSTSPTSHAPSANPPKGSSPTP 182
                S         P + S +  S +    + S       +P S   S+     SS + 
Sbjct: 2   AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61

Query: 183 ATSPSTSSPYPPKGYSPVPATSPS-TSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPA 241
                       +G       SPS  SPS+ A         S   ++SPS S  ++ S  
Sbjct: 62  FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121

Query: 242 A 242
           +
Sbjct: 122 S 122

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 29/130 (22%), Positives = 39/130 (30%), Gaps = 12/130 (9%)

Query: 175 PKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPV--PATSPST 232
           P  +    A  PS    Y P   S  P       P +  P  + P+   P   P   P+ 
Sbjct: 75  PANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAY 134

Query: 233 SPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAA 292
            P   Q         ++PAP    S    +Q     A           P  +P  +P A 
Sbjct: 135 QPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAE----------PVAAPQPEPVAE 184

Query: 293 NAPTGVSPPP 302
            AP    P  
Sbjct: 185 PAPVMDKPKR 194

Length = 333

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 220 KGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGT 279
            G    PA +P+++P+ + SP A+  +G+S AP    S      P   +A      AP +
Sbjct: 81  TGKVAPPAATPTSAPTPTPSPPASPASGMSAAP---ASAVEEKSPSEESATA---TAPES 134

Query: 280 SPSTSPSSQPPAANA 294
             ++ PSS   AA+ 
Sbjct: 135 PSTSVPSSGSDAAST 149

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 27/203 (13%)

Query: 139 KPPPHAPSP--KSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATS----------- 185
           K   H  S   K  S A+    TS            N     S    T            
Sbjct: 203 KEENHTLSVTDKEKSEASSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDH 262

Query: 186 -PSTSSPYP--------PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS 236
             S +  +          K       T       S+   P           TS S+S ++
Sbjct: 263 HHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAA 322

Query: 237 SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT 296
               + ++ +       ++ + S SS P + ++  G  P+   S + S   +   +++  
Sbjct: 323 GSIGSKSSKSA----KHSNRNKSNSS-PKSHSSANGSVPSSSVSDNESKQKRASKSSSGA 377

Query: 297 GVSPPPGTSPSTSPPAVPSSPGN 319
             S    +  S +       P N
Sbjct: 378 RDSKKDASGMSANGTVENCIPEN 400

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 20/170 (11%)

Query: 156 PPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPST-SPSS--- 211
           P  ++ S+ P++      P    +    TS + S    P       +   S  S S+   
Sbjct: 460 PYGSTESSVPST------PSTRRNDRNITSNTPSLKRTPNLTKSSLSQEASLISKSTGNT 513

Query: 212 --HAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSP-SSQPPAAN 268
             H+           +PA S S+  +  +S A    +    +PG+  S SP  S P    
Sbjct: 514 HKHSTPRRLTTL-PKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVPLVRV 572

Query: 269 APTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTS---PPAVPS 315
               L  A  T    S  S          +   P + P  S    P + S
Sbjct: 573 FDIHLR-ASTTKGRHSTPSTNEKKKRL--LKRSPLSPPKESVATTPRLNS 619

Length = 619

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 2/133 (1%)

Query: 178 SSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSS 237
           SS  P +SP  + P P        +TS S   +  +  P      +    T  S    SS
Sbjct: 279 SSAYPNSSPRQALP-PSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSLWSPSS 337

Query: 238 QSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTG 297
               A  P+ +  +P      SPS     A   TG       S ST  +S PP   A   
Sbjct: 338 LCGMATPPSSIGMSPLILSL-SPSHLSGRAPGTTGSGKGEPASESTPSTSPPPPGLADDI 396

Query: 298 VSPPPGTSPSTSP 310
           V     TS  ++P
Sbjct: 397 VRAIFATSSRSAP 409

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 37/160 (23%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 136 PTTKPPPHAPS--PKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYP 193
           P  +P  H P   PK   P   PP++    S   H      PK +S       S      
Sbjct: 339 PLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRH-----HPKRASLPTRKRRSARHAAT 393

Query: 194 PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPG 253
           P    P        +    A  P P    +PVPA++P   P ++  P+A   +   PAP 
Sbjct: 394 PFARGPGGDDQTRPAAPVPASVPTP--APTPVPASAP--PPPATPLPSAEPGSDDGPAPP 449

Query: 254 TSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAAN 293
                   +  PA + P   +     +       +PP A+
Sbjct: 450 PERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGAD 489

Length = 3151

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 145 PSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATS 204
           P   S +          +   T+   S  P   ++P PA  P  ++   P   +   A +
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222

Query: 205 PSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQS 239
           P+ +  +      P     P      ST  +   +
Sbjct: 223 PAPAAPATPDGAAP----LPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 13/83 (15%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
            P  P+  PP   PP    +P    PA   PA      P    P+A  P   S  PA + 
Sbjct: 393 TPAAPAAPPPAAAPPVPPAAP--ARPAAARPA------PAPAPPAAAAPPARSADPAAAA 444

Query: 187 STSSPYPP-----KGYSPVPATS 204
           S    +       KG  P    S
Sbjct: 445 SAGDRWRAFVAFVKGKKPALGAS 467

Length = 576

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 159 TSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYP 218
           TS +T     AP+ +     +P PA +P++++   P       A +P T  +S    P P
Sbjct: 33  TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPD-----LAQAP-TPAASEKFDPAP 86

Query: 219 PKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPG 278
               +   A  P+ +P  + +P         P    + +++  +    A+A T  +    
Sbjct: 87  APHQAASRAPDPAVAPQLAAAP--------KPDAAEAFTSAAQAHEAPADAGTSAASKKP 138

Query: 279 TSPSTSPSSQPPAA 292
              + +  S PP A
Sbjct: 139 DPAAHTQHSPPPFA 152

Length = 566

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 131 PSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSS 190
           P TG     PP   P+  +P+P   PPA SP++  ++   SA   K  S   AT+    +
Sbjct: 77  PKTGTGKVAPPAATPT-SAPTPTPSPPA-SPASGMSAAPASAVEEKSPSEESATAT---A 131

Query: 191 PYPPKGYSPVPA 202
           P  P    P   
Sbjct: 132 PESPSTSVPSSG 143

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 11/174 (6%)

Query: 160 SPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPP 219
           S S+S +S   S+     ++     +    +  PP+  S  P +   T     A  P  P
Sbjct: 82  SGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPT----QAAPPQTP 137

Query: 220 KGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGT 279
            G   +      +   S Q    NA +  +    ++  T+P++  P+  A    +     
Sbjct: 138 NGQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHP 197

Query: 280 SPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAG 333
           +P   P+++ PA N          T+    PPA    P +  + A + SS PA 
Sbjct: 198 TPPQKPATKKPAVN-------HHKTATVAVPPATSGKPKSGAASARALSSAPAS 244

Length = 327

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 9/215 (4%)

Query: 150 PSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSP 209
           P  +   P++SPS+S     P + P    S     +P + S              P+ + 
Sbjct: 390 PGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLA- 448

Query: 210 SSHAPSPYPPKGYSPVPATSPSTSPSSSQSP----AANAPTGLSPAPGTSPSTSPSSQPP 265
            S                TSP++S      P       +    +         + SS PP
Sbjct: 449 -SIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSIPP 507

Query: 266 AANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAP 325
            +   + ++    + P++  SS      + +G    P   P+       +      S++ 
Sbjct: 508 LSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRSVSD 567

Query: 326 SNS---SNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
                                +   + +S   S+ 
Sbjct: 568 IEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSL 602

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
           PP +  P   +PPP A       PA      +P      HA      +      A +P+ 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLV--EHAKRLTAQREQLVARAAAPAA 110

Query: 189 SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAP 245
                P             +P+  A +    +  +   A +P     +  + A    
Sbjct: 111 PEAQAP------------AAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 145 PSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST---SSPYPPKGYSPVP 201
           P+  + S  T   + SPST      PS +PP G   +P  +PS     S  PP  +   P
Sbjct: 573 PTGSAASSNTTFSSDSPSTVVA---PSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSP 629

Query: 202 ATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLS 249
           +T+PS        SP      +     SP +S   + + ++ +   +S
Sbjct: 630 STTPS--------SPESSIKVASTETASPESSIKVASTESSVSMVSMS 669

Length = 670

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 53/288 (18%), Positives = 82/288 (28%), Gaps = 14/288 (4%)

Query: 77  DSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERPPPPSTGPP 136
           +S      +L  ++ D       S             +     I+    + P        
Sbjct: 378 NSGKEMPGILTTENLDLPLASTDSTEMDPEDKRGGAVKINNSGILAWGLKTPGLAVNDER 437

Query: 137 TTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSAN---PPKGSSPTPATSPSTSSPYP 193
           +        +     P+     +S     +   PS      P            T++P  
Sbjct: 438 SIAVSSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVSAPASRLDDAKRPEVTATPES 497

Query: 194 PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPG 253
               S   A+      SS A S    K   P       + P   +SP  +  T +     
Sbjct: 498 SGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPPP--KSPPKSRRTLIVALSL 555

Query: 254 TSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAV 313
            SPST+ S +P  +     +   P    +T   +         G S  P  S S+ P   
Sbjct: 556 ASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTG 615

Query: 314 PSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSLG 361
           P S     +L         G TP  S  G+    +  SS V  P  LG
Sbjct: 616 PGSDLKPATL--------NGKTPSSSLVGAA-RNAGASSKVKIPSGLG 654

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 27/121 (22%), Positives = 36/121 (29%), Gaps = 19/121 (15%)

Query: 129 PPPSTGPPTTK--PPPHAPSPKSPSPATQP--PATSPST--SPTSH-APSANPPKGSSPT 181
           P P+  P   K  P P  P P       +P  P   P+   SP S   P   PP   S  
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441

Query: 182 PATSPSTSSPYPPKGYSPV--------PATSPSTSPSSHAPSPYPPKGYSPVPATSPSTS 233
              SP  S+P       P            + + + S   P     +  S   A +    
Sbjct: 442 LPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPV----QASSSDAAQTGVFE 497

Query: 234 P 234
            
Sbjct: 498 G 498

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 236 SSQSPAANAPTGLSPAPGTSPSTS-PSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANA 294
           +   P+A        AP   P  + P   P A   P    PAP             A  A
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAP-----APAPPAAAAPPA 435

Query: 295 PTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPS 326
            +       ++       V    G  P+L  S
Sbjct: 436 RSADPAAAASAGDRWRAFVAFVKGKKPALGAS 467

Length = 576

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 23/124 (18%), Positives = 44/124 (35%)

Query: 179 SPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQ 238
           S                  S + A +   S      S  P +G  P  +    ++P++ +
Sbjct: 146 SSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLE 205

Query: 239 SPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGV 298
           SP+    T   P P ++ ++  S+   +AN     S A   S  +  S+    +++   V
Sbjct: 206 SPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSSINPV 265

Query: 299 SPPP 302
           S   
Sbjct: 266 SGLD 269

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 26/136 (19%), Positives = 38/136 (27%), Gaps = 9/136 (6%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSP------STSPTSHAPSANPPKGSSPTP 182
                  P         S   P    Q   T P      S   +      +   GS  +P
Sbjct: 486 SGHLPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSY-SGSIVSP 544

Query: 183 ATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAA 242
              P+  S     G S   + S          +  P +  +       +TS   S S   
Sbjct: 545 PPYPTLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLP- 603

Query: 243 NAPTGLSPAPGTSPST 258
            +PTG+   PG+ P  
Sbjct: 604 -SPTGVIGFPGSVPRF 618

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 183 ATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAA 242
           A +P  ++        P  A +  + P++ A  P P         T+      + ++ A 
Sbjct: 50  ALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVA-RAAAP 108

Query: 243 NAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSP 300
            AP   +PA         +++  A         A   +P     +   AA A    + 
Sbjct: 109 AAPEAQAPAAPAER---AAAENAARRLAR----AAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 38.8 bits (89), Expect = 0.004
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 12/165 (7%)

Query: 158 ATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPY 217
           A + +    + A  A  P G     A +P+ ++  P K          + +P + A +  
Sbjct: 194 AAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAK----------AAAPPAKAAAAP 243

Query: 218 PPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAP 277
                +P  A +P    ++  + AA  P   +  P  + + +P ++  A  A    +PA 
Sbjct: 244 AKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPP--AKAAAPPAKAAAPPAKAAAAPAK 301

Query: 278 GTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPS 322
             +     ++ P  A AP   +  P    +T P    + P  A +
Sbjct: 302 AAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAA 346

Length = 357

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 38.4 bits (88), Expect = 0.004
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 194 PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPG 253
           P G     A +P+ + ++ A +  PP   +  PA + +    ++  PA  A      A  
Sbjct: 211 PSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAP 270

Query: 254 TSPSTSPSSQPPAANAPTGLSPA-PGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPA 312
            + + +P ++  A  A     PA    +P+ + ++   AA AP   + PP  + + +PPA
Sbjct: 271 PAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPP--AKAAAPPA 328

Query: 313 VPSSPGNAPSLAPSNSS 329
             ++P    +  P+ ++
Sbjct: 329 KAATPPAKAAAPPAKAA 345

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
PLN03148	167	Blue copper-like protein; Provisional	100.0
PF02298	85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.95
PRK02710	119	plastocyanin; Provisional	98.8
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	98.53
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	98.39
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	98.38
COG3794	128	PetE Plastocyanin [Energy production and conversio	98.08
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	98.0
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	97.47
TIGR02657	83	amicyanin amicyanin. Members of this family are am	97.32
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	96.55
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	96.37
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	96.09
KOG3858	233	consensus Ephrin, ligand for Eph receptor tyrosine	95.98
COG4454	158	Uncharacterized copper-binding protein [Inorganic	94.82
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	94.34
PF00812	145	Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a	94.27
TIGR02695	125	azurin azurin. Azurin is a blue copper-binding pro	91.49
KOG0260	1605	consensus RNA polymerase II, large subunit [Transc	90.04
PLN02604	566	oxidoreductase	90.0
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	89.34
PRK02888	635	nitrous-oxide reductase; Validated	88.04
KOG0260	1605	consensus RNA polymerase II, large subunit [Transc	86.94
PF00116	120	COX2: Cytochrome C oxidase subunit II, periplasmic	86.57
TIGR01480	587	copper_res_A copper-resistance protein, CopA famil	86.42
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	86.42
PRK10378	375	inactive ferrous ion transporter periplasmic prote	85.22
TIGR02866	201	CoxB cytochrome c oxidase, subunit II. Cytochrome	85.03
PLN02354	552	copper ion binding / oxidoreductase	84.4

>PLN03148 Blue copper-like protein; Provisional

Probab=100.00  E-value=2.3e-39  Score=290.88  Aligned_cols=114  Identities=32%  Similarity=0.596  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhhcccceEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCcccc
Q 016941            9 LSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKL   88 (380)
Q Consensus         9 llLaLLAaL~s~AsA~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~f   88 (380)
                      |++++++++...+.+++|+|||+.||+.  +.||++|+++++|+|||+|+|+|+.+.|+|+||++++|++|+..+++..|
T Consensus         6 l~~~~~~~~~~~~~a~~~~VGd~~GW~~--~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~   83 (167)
T PLN03148          6 LFCFFALFSASATTATDHIVGANKGWNP--GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNW   83 (167)
T ss_pred             HHHHHHHHhhhhccceEEEeCCCCCcCC--CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCccee
Confidence            3333444556688899999999999984  57999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEeccccceEEEeCCCCcCCCCCeEEEEecC
Q 016941           89 DSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLH  125 (380)
Q Consensus        89 SsGndvVtLdkpG~yYFICGV~gHCq~GMKLaInV~a  125 (380)
                      ++|++.|+|+++|+|||||+ .+||++||||.|+|..
T Consensus        84 tsG~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~  119 (167)
T PLN03148         84 TSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP  119 (167)
T ss_pred             cCCCcEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence            99999999999999999999 5999999999999953

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=99.95  E-value=8e-30  Score=205.03  Aligned_cols=84  Identities=44%  Similarity=0.911  Sum_probs=69.0

Q ss_pred             CccCC-CCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccceEEEeCCCCc
Q 016941           34 WVTNP-GENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDH  112 (380)
Q Consensus        34 Wt~~P-~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~yYFICGV~gH  112 (380)
                      |+++. ..+|++||++++|+|||+|+|+|+.+.|+|+||+|++|+.|+..+++..+.+|++.|+|+++|++||||++++|
T Consensus         1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H   80 (85)
T PF02298_consen    1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH   80 (85)
T ss_dssp             SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred             CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence            77653 26999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 016941          113 CQKGQ  117 (380)
Q Consensus       113 Cq~GM  117 (380)
                      |++||
T Consensus        81 C~~Gq   85 (85)
T PF02298_consen   81 CQKGQ   85 (85)
T ss_dssp             TTTT-
T ss_pred             ccccC
Confidence            99999

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.

>PRK02710 plastocyanin; Provisional

Probab=98.80  E-value=6.2e-08  Score=81.80  Aligned_cols=85  Identities=15%  Similarity=0.238  Sum_probs=58.1

Q ss_pred             EEEecCCCCC-ccCCCCCcccccCCCeEecCceeeeeee-cCCceEEEecccCCCCCCCCCCccccCCCC-cEEEecccc
Q 016941           25 KFNVGGKHGW-VTNPGENYNKWSGRNRFLVNDTLFFKYK-KGSDSVLLVNKDDYDSCNTKKPLLKLDSGD-SEFKLDRSG  101 (380)
Q Consensus        25 tyvVGGs~GW-t~~P~~nYt~WAS~kTF~VGDTLVFkY~-aG~HSVveVnK~dYdsCn~snpI~~fSsGn-dvVtLdkpG  101 (380)
                      ++.+|.++|+ .|.|        +..++++||+|.|... ...|+|+.-   +.+.....+  .....|. .+++++++|
T Consensus        32 ~V~~~~~~~~~~F~P--------~~i~v~~Gd~V~~~N~~~~~H~v~~~---~~~~~~~~~--~~~~pg~t~~~tF~~~G   98 (119)
T PRK02710         32 EVKMGSDAGMLAFEP--------STLTIKAGDTVKWVNNKLAPHNAVFD---GAKELSHKD--LAFAPGESWEETFSEAG   98 (119)
T ss_pred             EEEEccCCCeeEEeC--------CEEEEcCCCEEEEEECCCCCceEEec---CCccccccc--cccCCCCEEEEEecCCE
Confidence            5667766555 4443        4679999999999874 356998642   111111111  1233443 578999999


Q ss_pred             ceEEEeCCCCcCCCCCeEEEEec
Q 016941          102 PFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       102 ~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      .|.|+|.  .|=+.|||..|+|.
T Consensus        99 ~y~y~C~--~H~~~gM~G~I~V~  119 (119)
T PRK02710         99 TYTYYCE--PHRGAGMVGKITVE  119 (119)
T ss_pred             EEEEEcC--CCccCCcEEEEEEC
Confidence            9999999  79999999999983

>TIGR02656 cyanin_plasto plastocyanin

Probab=98.53  E-value=4.9e-07  Score=73.80  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=59.7

Q ss_pred             EEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeec-CCceEEEeccc-----CCCCCCCCCCccccCCCC-cEEE
Q 016941           25 KFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK-GSDSVLLVNKD-----DYDSCNTKKPLLKLDSGD-SEFK   96 (380)
Q Consensus        25 tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-G~HSVveVnK~-----dYdsCn~snpI~~fSsGn-dvVt   96 (380)
                      ++.||.+ .+-.|.|.        ..++++||+|+|..+. ..|+|+.....     ........+.......|. ..++
T Consensus         2 ~v~~g~~~g~~~F~P~--------~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~t   73 (99)
T TIGR02656         2 TVKMGADKGALVFEPA--------KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVT   73 (99)
T ss_pred             EEEEecCCCceeEeCC--------EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEE
Confidence            5678854 44667653        6799999999999653 45998763221     000111111011123444 4788


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++.+|.|.|+|.  .||+.||+..|.|.
T Consensus        74 F~~~G~y~y~C~--~H~~aGM~G~I~V~   99 (99)
T TIGR02656        74 FSTPGTYTFYCE--PHRGAGMVGKITVE   99 (99)
T ss_pred             eCCCEEEEEEcC--CccccCCEEEEEEC
Confidence            999999999999  89999999999884

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=98.39  E-value=1.1e-06  Score=71.40  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=53.4

Q ss_pred             CCeEecCceeeeee-ecCCceEEEeccc--CCCCCCCCCC---ccccCCCC-cEEEeccccceEEEeCCCCcCCCCCeEE
Q 016941           48 RNRFLVNDTLFFKY-KKGSDSVLLVNKD--DYDSCNTKKP---LLKLDSGD-SEFKLDRSGPFYFISGNHDHCQKGQKLI  120 (380)
Q Consensus        48 ~kTF~VGDTLVFkY-~aG~HSVveVnK~--dYdsCn~snp---I~~fSsGn-dvVtLdkpG~yYFICGV~gHCq~GMKLa  120 (380)
                      ..++++||+|.|.+ +...|+|+.....  .-..++....   ......|. ..++++++|.|.|+|. . |+..||+-.
T Consensus        18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~   95 (99)
T PF00127_consen   18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT   95 (99)
T ss_dssp             EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred             EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence            67899999999999 4567999887521  0111221111   11234454 3788889999999999 7 999999999


Q ss_pred             EEec
Q 016941          121 VVVL  124 (380)
Q Consensus       121 InV~  124 (380)
                      |.|.
T Consensus        96 i~V~   99 (99)
T PF00127_consen   96 IIVE   99 (99)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9984

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>TIGR03102 halo_cynanin halocyanin domain

Probab=98.38  E-value=2.1e-06  Score=73.66  Aligned_cols=88  Identities=22%  Similarity=0.355  Sum_probs=63.2

Q ss_pred             cceEEEec--CC-CCCccCCCCCcccccCCCeEecCceeeeeeec--CCceEEEecccCCCCCCCCCCccccCCC-CcEE
Q 016941           22 HALKFNVG--GK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK--GSDSVLLVNKDDYDSCNTKKPLLKLDSG-DSEF   95 (380)
Q Consensus        22 sA~tyvVG--Gs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a--G~HSVveVnK~dYdsCn~snpI~~fSsG-ndvV   95 (380)
                      ...++.||  ++ .+..|.|.        ..++++||+|+|+|+.  ..|+|.-.+...|+.    .. .....| ...+
T Consensus        22 ~~~~v~~G~~~~~g~~~F~P~--------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~-~~~~~G~t~s~   88 (115)
T TIGR03102        22 DEVTVDVGAEANGGGFAFDPP--------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE-RVSEEGTTYEH   88 (115)
T ss_pred             ceEEEEecccCCCCceeEeCC--------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc-cccCCCCEEEE
Confidence            44678898  33 34667663        5799999999999865  569997633334441    11 122334 4589


Q ss_pred             EeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           96 KLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        96 tLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +|+++|.|.|+|..  |=..|||-.|.|.
T Consensus        89 Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~  115 (115)
T TIGR03102        89 TFEEPGIYLYVCVP--HEALGMKGAVVVE  115 (115)
T ss_pred             EecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence            99999999999996  8888999999983

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=98.08  E-value=2.6e-05  Score=68.65  Aligned_cols=84  Identities=20%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             EEEecC-CCCCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecccCCCCCCCCCCccccCCC---CcEEEecc
Q 016941           25 KFNVGG-KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNKDDYDSCNTKKPLLKLDSG---DSEFKLDR   99 (380)
Q Consensus        25 tyvVGG-s~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK~dYdsCn~snpI~~fSsG---ndvVtLdk   99 (380)
                      ...++. .+.-.|.|        +..++.+||++.|.|... .|||.-+...+.+      ....+..+   ..++++++
T Consensus        39 ~~~~~~~~~~~vF~P--------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~------g~~~~~~~~~~s~~~Tfe~  104 (128)
T COG3794          39 SVNKGVDIGAMVFEP--------AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPE------GSGTLKAGINESFTHTFET  104 (128)
T ss_pred             eeeeeccCcceeEcC--------cEEEECCCCEEEEEECCCCCceEEEeCCCCcc------cccccccCCCcceEEEecc
Confidence            344443 34466766        367999999999999887 8999886544111      11112222   24788999


Q ss_pred             ccceEEEeCCCCcCCCCCeEEEEec
Q 016941          100 SGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       100 pG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +|.|.|+|.-  |=..|||-.|.|.
T Consensus       105 ~G~Y~Y~C~P--H~~~gM~G~IvV~  127 (128)
T COG3794         105 PGEYTYYCTP--HPGMGMKGKIVVG  127 (128)
T ss_pred             cceEEEEecc--CCCCCcEEEEEeC
Confidence            9999999998  9999999999985

>TIGR02375 pseudoazurin pseudoazurin

Probab=98.00  E-value=3.3e-05  Score=66.41  Aligned_cols=75  Identities=12%  Similarity=0.045  Sum_probs=54.4

Q ss_pred             CCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccceEEEeCCCCcCCCCCeEEEEecCCC
Q 016941           48 RNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER  127 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~yYFICGV~gHCq~GMKLaInV~ass  127 (380)
                      ..++++||+|+|.+....|+|..+.....+.   .+.+..-.+...+++++++|.|-|+|.  .|=..||+-.|+|....
T Consensus        16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~   90 (116)
T TIGR02375        16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPP   90 (116)
T ss_pred             EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence            5799999999999988889997643211111   111111012335899999999999999  59999999999998753

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>TIGR03095 rusti_cyanin rusticyanin

Probab=97.47  E-value=0.00067  Score=60.20  Aligned_cols=75  Identities=15%  Similarity=0.226  Sum_probs=49.4

Q ss_pred             CeEecCceeeeeeecC----CceEEEeccc-CC-----------C-CCCCCCCc--cccCCCCcEEEeccccceEEEeCC
Q 016941           49 NRFLVNDTLFFKYKKG----SDSVLLVNKD-DY-----------D-SCNTKKPL--LKLDSGDSEFKLDRSGPFYFISGN  109 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG----~HSVveVnK~-dY-----------d-sCn~snpI--~~fSsGndvVtLdkpG~yYFICGV  109 (380)
                      .+++.||+|+|.+.+.    .|.....++. .+           . .|.+....  ..+..+..+|+++++|+|||+|..
T Consensus        54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~  133 (148)
T TIGR03095        54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY  133 (148)
T ss_pred             EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence            4689999999999775    3665543321 11           1 13221111  001112457888899999999999


Q ss_pred             CCcCCCCCeEEEEe
Q 016941          110 HDHCQKGQKLIVVV  123 (380)
Q Consensus       110 ~gHCq~GMKLaInV  123 (380)
                      .+|=+.||+-.|.|
T Consensus       134 pgH~~~GM~G~iiV  147 (148)
T TIGR03095       134 PGHAENGMYGKIVV  147 (148)
T ss_pred             hhHHHCCCEEEEEE
Confidence            99999999988877

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>TIGR02657 amicyanin amicyanin

Probab=97.32  E-value=0.001  Score=52.85  Aligned_cols=70  Identities=17%  Similarity=0.207  Sum_probs=48.3

Q ss_pred             CCeEecCceeeeeeecC-CceEEEecccCCCCCCCCCCccccCCCC-cEEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           48 RNRFLVNDTLFFKYKKG-SDSVLLVNKDDYDSCNTKKPLLKLDSGD-SEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG-~HSVveVnK~dYdsCn~snpI~~fSsGn-dvVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ..++++||+|.|..... .|+|...+.. +..=+....  ....|. .+++++++|.|-|.|..+.    +||-.|.|.
T Consensus        12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~-~~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~   83 (83)
T TIGR02657        12 ELHVKVGDTVTWINREAMPHNVHFVAGV-LGEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE   83 (83)
T ss_pred             EEEECCCCEEEEEECCCCCccEEecCCC-Ccccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence            56899999999998754 6999764322 111111111  123443 4899999999999999855    499998873

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=96.55  E-value=0.0046  Score=55.14  Aligned_cols=58  Identities=17%  Similarity=0.273  Sum_probs=37.3

Q ss_pred             cCCCeEecCceeeeeeecCC---ceEEEecccCCCCCCCCCCccccCCCCc---EEEeccccceEEEeCCCCcCC
Q 016941           46 SGRNRFLVNDTLFFKYKKGS---DSVLLVNKDDYDSCNTKKPLLKLDSGDS---EFKLDRSGPFYFISGNHDHCQ  114 (380)
Q Consensus        46 AS~kTF~VGDTLVFkY~aG~---HSVveVnK~dYdsCn~snpI~~fSsGnd---vVtLdkpG~yYFICGV~gHCq  114 (380)
                      -+..+++.||.+++.|.+..   |.+..   ++|+   ..   .....|..   .|+.+++|.|+|+|+.  ||.
T Consensus        60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~  123 (135)
T TIGR03096        60 PEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPK  123 (135)
T ss_pred             CCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence            35568899999999886533   44332   2332   11   12233433   5778999999999998  774

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=96.37  E-value=0.015  Score=54.90  Aligned_cols=78  Identities=13%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             EecCceeeeeeecCC---ceEEEecc-cCCCCCCCC---CCccc--------c-----CCCCcE---EEeccccceEEEe
Q 016941           51 FLVNDTLFFKYKKGS---DSVLLVNK-DDYDSCNTK---KPLLK--------L-----DSGDSE---FKLDRSGPFYFIS  107 (380)
Q Consensus        51 F~VGDTLVFkY~aG~---HSVveVnK-~dYdsCn~s---npI~~--------f-----SsGndv---VtLdkpG~yYFIC  107 (380)
                      +-.|.++.|+|.+..   |+++.|.. ..+..|..-   +.+..        |     ..|...   +.-..+|+|||+|
T Consensus        90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC  169 (196)
T PF06525_consen   90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC  169 (196)
T ss_pred             EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence            456888888887643   99877732 233333211   22210        0     123322   2122479999999


Q ss_pred             CCCCcCCCCCeEEEEecCCCC
Q 016941          108 GNHDHCQKGQKLIVVVLHERP  128 (380)
Q Consensus       108 GV~gHCq~GMKLaInV~asss  128 (380)
                      +..+|-+.||-..+.|...-.
T Consensus       170 ~ipGHA~sGMw~~LiVs~~vt  190 (196)
T PF06525_consen  170 GIPGHAESGMWGVLIVSSNVT  190 (196)
T ss_pred             cCCChhhcCCEEEEEEecCcc
Confidence            999999999999999887654

The most closely related proteins characterised as functionally different are the rusticyanins.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=96.09  E-value=0.0054  Score=50.00  Aligned_cols=63  Identities=13%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             CCeEecCceeeeeeecC---CceEEEecccCCCCCCCCCCccccCCCCc-EEEe--ccccceEEEeCCCCcCCCCCeEEE
Q 016941           48 RNRFLVNDTLFFKYKKG---SDSVLLVNKDDYDSCNTKKPLLKLDSGDS-EFKL--DRSGPFYFISGNHDHCQKGQKLIV  121 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG---~HSVveVnK~dYdsCn~snpI~~fSsGnd-vVtL--dkpG~yYFICGV~gHCq~GMKLaI  121 (380)
                      ..+++.||.+.|.|.+.   .|++..   .++      +.......|.. +|++  +++|.|=|+|+.+.  .  ||-.|
T Consensus        36 ~i~v~~G~~v~l~~~N~~~~~h~~~i---~~~------~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~--~--m~G~l  102 (104)
T PF13473_consen   36 TITVKAGQPVTLTFTNNDSRPHEFVI---PDL------GISKVLPPGETATVTFTPLKPGEYEFYCTMHP--N--MKGTL  102 (104)
T ss_dssp             EEEEETTCEEEEEEEE-SSS-EEEEE---GGG------TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS---T--TB---
T ss_pred             EEEEcCCCeEEEEEEECCCCcEEEEE---CCC------ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCC--c--ceecc
Confidence            67999999555555442   355543   111      11122334443 4555  89999999999754  3  77666


Q ss_pred             Ee
Q 016941          122 VV  123 (380)
Q Consensus       122 nV  123 (380)
                      .|
T Consensus       103 iV  104 (104)
T PF13473_consen  103 IV  104 (104)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]

Probab=95.98  E-value=0.026  Score=54.52  Aligned_cols=105  Identities=22%  Similarity=0.416  Sum_probs=59.8

Q ss_pred             HHHhhcccce-EEEecCCCCCcc-CCC---CCcccccCCCeEecCceeeeeeec---CC------ceEEEecccCCCCCC
Q 016941           15 AFFISSSHAL-KFNVGGKHGWVT-NPG---ENYNKWSGRNRFLVNDTLFFKYKK---GS------DSVLLVNKDDYDSCN   80 (380)
Q Consensus        15 AaL~s~AsA~-tyvVGGs~GWt~-~P~---~nYt~WAS~kTF~VGDTLVFkY~a---G~------HSVveVnK~dYdsCn   80 (380)
                      ++.+..+.+. .|.|=    |.. ++-   .||     .+.+++||.|-+-...   +.      .-|++|+++.|+.|+
T Consensus        15 l~~~~~~~~~~~~~Vy----WNSSNp~F~~~d~-----vI~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~   85 (233)
T KOG3858|consen   15 LCPLGLAAGKNLHPVY----WNSSNPRFRRGDY-----VIYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCE   85 (233)
T ss_pred             hcccccCccccccceE----ecCCCcceecCCc-----eEEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhh
Confidence            4455666666 66665    853 221   122     2457889999886532   21      225789999999999


Q ss_pred             C-CCCcccc--CC--C--------------CcEEEecccc-ceEEEeCCC-----------CcCC-CCCeEEEEecCCCC
Q 016941           81 T-KKPLLKL--DS--G--------------DSEFKLDRSG-PFYFISGNH-----------DHCQ-KGQKLIVVVLHERP  128 (380)
Q Consensus        81 ~-snpI~~f--Ss--G--------------ndvVtLdkpG-~yYFICGV~-----------gHCq-~GMKLaInV~asss  128 (380)
                      . .++....  +.  .              ..-+.+ ++| .||||+.-.           +-|. ..||+.+.|.....
T Consensus        86 ~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~  164 (233)
T KOG3858|consen   86 LRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPGHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR  164 (233)
T ss_pred             ccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCCCeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence            6 3332111  10  0              011222 245 788887422           3454 36999999987665


Q ss_pred             C
Q 016941          129 P  129 (380)
Q Consensus       129 ~  129 (380)
                      .
T Consensus       165 ~  165 (233)
T KOG3858|consen  165 S  165 (233)
T ss_pred             C
Confidence            4

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=94.82  E-value=0.39  Score=44.36  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=50.5

Q ss_pred             cCCCeEecCceeeeeeecCCceEEEe--cccCCC-----C--------CCCCCCccccCCC---CcEEEeccccceEEEe
Q 016941           46 SGRNRFLVNDTLFFKYKKGSDSVLLV--NKDDYD-----S--------CNTKKPLLKLDSG---DSEFKLDRSGPFYFIS  107 (380)
Q Consensus        46 AS~kTF~VGDTLVFkY~aG~HSVveV--nK~dYd-----s--------Cn~snpI~~fSsG---ndvVtLdkpG~yYFIC  107 (380)
                      .+...++-|.+++|.-++....+.++  .+.+..     .        -+..+. .+..-|   .-+|.+.++|.|=|+|
T Consensus        62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~-v~L~PG~s~elvv~ft~~g~ye~~C  140 (158)
T COG4454          62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNT-VTLAPGKSGELVVVFTGAGKYEFAC  140 (158)
T ss_pred             CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcce-eEeCCCCcEEEEEEecCCccEEEEe
Confidence            35567899999988877654333322  111110     0        011111 122333   3478899999999999


Q ss_pred             CCCCcCCCCCeEEEEec
Q 016941          108 GNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       108 GV~gHCq~GMKLaInV~  124 (380)
                      .+++|-+.||.-.|+|.
T Consensus       141 ~iPGHy~AGM~g~itV~  157 (158)
T COG4454         141 NIPGHYEAGMVGEITVS  157 (158)
T ss_pred             cCCCcccCCcEEEEEeC
Confidence            99999999999999985

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=94.34  E-value=0.19  Score=47.56  Aligned_cols=34  Identities=18%  Similarity=0.434  Sum_probs=28.2

Q ss_pred             EEeccccceEEEeCCCCcCCCCCeEEEEecCCCC
Q 016941           95 FKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERP  128 (380)
Q Consensus        95 VtLdkpG~yYFICGV~gHCq~GMKLaInV~asss  128 (380)
                      +.-..+|.||++|+..+|-+.||-..+.|...-.
T Consensus       156 ~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt  189 (195)
T TIGR03094       156 WNDTSAGKYWLVCGITGHAESGMWAVVIVSSNVT  189 (195)
T ss_pred             eccCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence            3434689999999999999999998888876543

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO)

Probab=94.27  E-value=0.034  Score=49.98  Aligned_cols=75  Identities=24%  Similarity=0.443  Sum_probs=44.6

Q ss_pred             eEecCceeeeeeecCC-----------ceEEEecccCCCCCCCCC-Ccccc------C-CCCcEEEe--c----------
Q 016941           50 RFLVNDTLFFKYKKGS-----------DSVLLVNKDDYDSCNTKK-PLLKL------D-SGDSEFKL--D----------   98 (380)
Q Consensus        50 TF~VGDTLVFkY~aG~-----------HSVveVnK~dYdsCn~sn-pI~~f------S-sGndvVtL--d----------   98 (380)
                      .+++||.|.|......           ..|++|++++|+.|+... ....+      . .|...|++  -          
T Consensus        25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E  104 (145)
T PF00812_consen   25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE  104 (145)
T ss_dssp             EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred             EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence            6889999999875432           347889999999999642 22111      1 23333331  1          


Q ss_pred             -ccc-ceEEEeCCC-----------CcCCC-CCeEEEEec
Q 016941           99 -RSG-PFYFISGNH-----------DHCQK-GQKLIVVVL  124 (380)
Q Consensus        99 -kpG-~yYFICGV~-----------gHCq~-GMKLaInV~  124 (380)
                       ++| .||||+.-.           |-|.. .|||.|.|.
T Consensus       105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~  144 (145)
T PF00812_consen  105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG  144 (145)
T ss_dssp             --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred             ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence             255 889998422           23754 799999885

These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....

>TIGR02695 azurin azurin

Probab=91.49  E-value=1.5  Score=39.09  Aligned_cols=29  Identities=17%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             cEEEec----ccc-ceEEEeCCCCcCCCCCeEEEE
Q 016941           93 SEFKLD----RSG-PFYFISGNHDHCQKGQKLIVV  122 (380)
Q Consensus        93 dvVtLd----kpG-~yYFICGV~gHCq~GMKLaIn  122 (380)
                      +.|+++    ++| .|=|||+.++|=. .||-.++
T Consensus        91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~  124 (125)
T TIGR02695        91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK  124 (125)
T ss_pred             EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence            345554    367 4999999999986 6887764

Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]

Probab=90.04  E-value=39  Score=40.27  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=14.4

Q ss_pred             EEEecc---ccceEE-EeCCCCcCCCCCeEE
Q 016941           94 EFKLDR---SGPFYF-ISGNHDHCQKGQKLI  120 (380)
Q Consensus        94 vVtLdk---pG~yYF-ICGV~gHCq~GMKLa  120 (380)
                      +|.|..   -|++.| +-...+.|..||.+.
T Consensus      1400 nImlgqlap~gTg~~d~~ld~e~l~~~~~~~ 1430 (1605)
T KOG0260|consen 1400 NIMLGQLAPMGTGCFDLMLDAEKLKKGIEIP 1430 (1605)
T ss_pred             eeeecccccCCCcceeeeccHHhhhccCccC
Confidence            455544   244433 223446788887666

>PLN02604 oxidoreductase

Probab=90.00  E-value=1.5  Score=46.42  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             CCCeEecCceeeeeeecCC----ceEEE--ec--ccC-CC------CCCCCCCccccCCCC---cEEEeccccceEEEeC
Q 016941           47 GRNRFLVNDTLFFKYKKGS----DSVLL--VN--KDD-YD------SCNTKKPLLKLDSGD---SEFKLDRSGPFYFISG  108 (380)
Q Consensus        47 S~kTF~VGDTLVFkY~aG~----HSVve--Vn--K~d-Yd------sCn~snpI~~fSsGn---dvVtLdkpG~yYFICG  108 (380)
                      -..+++.||+|++++.+..    |++..  +.  ... +|      .|.+       ..|.   ..|+++.+|+|||=|-
T Consensus        55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i-------~pg~s~~y~f~~~~~Gt~wyH~H  127 (566)
T PLN02604         55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPI-------LPGETFTYEFVVDRPGTYLYHAH  127 (566)
T ss_pred             CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCcc-------CCCCeEEEEEEcCCCEEEEEeeC
Confidence            3468999999999987752    23321  10  001 11      1221       2333   3688899999999999


Q ss_pred             CCCcCCCCCeEEEEecCCC
Q 016941          109 NHDHCQKGQKLIVVVLHER  127 (380)
Q Consensus       109 V~gHCq~GMKLaInV~ass  127 (380)
                      ...|-..||.-.|.|....
T Consensus       128 ~~~q~~~Gl~G~liV~~~~  146 (566)
T PLN02604        128 YGMQREAGLYGSIRVSLPR  146 (566)
T ss_pred             cHHHHhCCCeEEEEEEecC
Confidence            9899999999888887543

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=89.34  E-value=1.1  Score=44.11  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             CeEecCceeeeeeecC-----CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCC----CcCCCC
Q 016941           49 NRFLVNDTLFFKYKKG-----SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNH----DHCQKG  116 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG-----~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~----gHCq~G  116 (380)
                      .+++.||+|++.+.+.     .|++..=-....+   -...+.....|.   ..|+++.+|+|||-|...    .|=..|
T Consensus        61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G  137 (311)
T TIGR02376        61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG  137 (311)
T ss_pred             EEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence            5789999999888765     3655431100000   001111133444   368889999999999954    477889


Q ss_pred             CeEEEEecCCC
Q 016941          117 QKLIVVVLHER  127 (380)
Q Consensus       117 MKLaInV~ass  127 (380)
                      |.-.|.|....
T Consensus       138 l~G~liV~~~~  148 (311)
T TIGR02376       138 MNGAIMVLPRE  148 (311)
T ss_pred             cceEEEeeccC
Confidence            99999987643

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PRK02888 nitrous-oxide reductase; Validated

Probab=88.04  E-value=1.1  Score=48.84  Aligned_cols=71  Identities=10%  Similarity=0.154  Sum_probs=42.8

Q ss_pred             CCeEecCceeeeeeecCC--ceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCC---CCeE
Q 016941           48 RNRFLVNDTLFFKYKKGS--DSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQK---GQKL  119 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~--HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~---GMKL  119 (380)
                      ..++++||.+.|...+-.  .+|.-    .|......-. .....|.   ..|+.+++|.|||+|+.  .|..   +|+-
T Consensus       556 ~i~Vk~GDeVt~~lTN~d~~~DViH----GF~Ip~~nI~-~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~~M~G  628 (635)
T PRK02888        556 EFTVKQGDEVTVIVTNLDKVEDLTH----GFAIPNYGVN-MEVAPQATASVTFTADKPGVYWYYCTW--FCHALHMEMRG  628 (635)
T ss_pred             eEEecCCCEEEEEEEeCCccccccc----ceeecccCcc-EEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcccceE
Confidence            468999999999998621  11210    1111111101 1112333   36788999999999998  5644   6888


Q ss_pred             EEEecC
Q 016941          120 IVVVLH  125 (380)
Q Consensus       120 aInV~a  125 (380)
                      .|.|..
T Consensus       629 ~~iVep  634 (635)
T PRK02888        629 RMLVEP  634 (635)
T ss_pred             EEEEEe
Confidence            888864

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]

Probab=86.94  E-value=39  Score=40.28  Aligned_cols=12  Identities=25%  Similarity=0.351  Sum_probs=5.7

Q ss_pred             CCCcEEEecccc
Q 016941           90 SGDSEFKLDRSG  101 (380)
Q Consensus        90 sGndvVtLdkpG  101 (380)
                      +|...+.|+...
T Consensus      1411 Tg~~d~~ld~e~ 1422 (1605)
T KOG0260|consen 1411 TGCFDLMLDAEK 1422 (1605)
T ss_pred             CcceeeeccHHh
Confidence            444455555433

>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o

Probab=86.57  E-value=1.7  Score=37.29  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=40.9

Q ss_pred             CCCeEecCceeeeeeecC--CceEEEecccCCCCCCCCCCcc-ccCCCC---cEEEeccccceEEEeCCCCcCCCC---C
Q 016941           47 GRNRFLVNDTLFFKYKKG--SDSVLLVNKDDYDSCNTKKPLL-KLDSGD---SEFKLDRSGPFYFISGNHDHCQKG---Q  117 (380)
Q Consensus        47 S~kTF~VGDTLVFkY~aG--~HSVveVnK~dYdsCn~snpI~-~fSsGn---dvVtLdkpG~yYFICGV~gHCq~G---M  117 (380)
                      +...+..|+.+.|+....  .|+...-   ++.       ++ ..-.|.   ..|+.+++|.|++.|..  .|..|   |
T Consensus        46 ~~l~lp~g~~v~~~ltS~DViHsf~ip---~~~-------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M  113 (120)
T PF00116_consen   46 NELVLPAGQPVRFHLTSEDVIHSFWIP---ELG-------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFM  113 (120)
T ss_dssp             SEEEEETTSEEEEEEEESSS-EEEEET---TCT-------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-
T ss_pred             ceecccccceEeEEEEcCCcccccccc---ccC-------cccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCC
Confidence            344678889988888763  2544331   111       11 112333   35788999999999997  89877   8


Q ss_pred             eEEEEec
Q 016941          118 KLIVVVL  124 (380)
Q Consensus       118 KLaInV~  124 (380)
                      ++.|.|.
T Consensus       114 ~~~v~VV  120 (120)
T PF00116_consen  114 PGKVIVV  120 (120)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEC
Confidence            8888763

; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....

>TIGR01480 copper_res_A copper-resistance protein, CopA family

Probab=86.42  E-value=3.1  Score=44.77  Aligned_cols=85  Identities=16%  Similarity=0.236  Sum_probs=54.2

Q ss_pred             CccCCCCCcccccCCCeEecCceeeeeeecCC---ceE------EEecccC--CCCCCCCCCccccCCCC---cEEEecc
Q 016941           34 WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS---DSV------LLVNKDD--YDSCNTKKPLLKLDSGD---SEFKLDR   99 (380)
Q Consensus        34 Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~---HSV------veVnK~d--YdsCn~snpI~~fSsGn---dvVtLdk   99 (380)
                      |+++ +..|.. ....+++.||.+++.+.+..   |.+      ++|...+  |..  ..+.+. ...|.   ..|.++.
T Consensus       488 wtiN-G~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~-V~Pg~t~~~~f~ad~  562 (587)
T TIGR01480       488 WSFD-GEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVD-VPPGGKRSFRVTADA  562 (587)
T ss_pred             EEEC-CccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCcee-eCCCCEEEEEEECCC
Confidence            9886 233333 23578999999999998743   332      3332211  111  001111 12333   3678899


Q ss_pred             ccceEEEeCCCCcCCCCCeEEEEe
Q 016941          100 SGPFYFISGNHDHCQKGQKLIVVV  123 (380)
Q Consensus       100 pG~yYFICGV~gHCq~GMKLaInV  123 (380)
                      +|+++|=|-+..|=+.||.-.|.|
T Consensus       563 pG~w~~HCH~l~H~~~GM~~~~~v  586 (587)
T TIGR01480       563 LGRWAYHCHMLLHMEAGMFREVTV  586 (587)
T ss_pred             CeEEEEcCCCHHHHhCcCcEEEEe
Confidence            999999999999999999888876

This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=86.42  E-value=0.61  Score=39.66  Aligned_cols=76  Identities=20%  Similarity=0.261  Sum_probs=47.0

Q ss_pred             CCeEecCceeeeeeecC---CceEEE--e--ccc-CCCC-C-CCCCCccccCCCC---cEEEecc-ccceEEEeCCCCcC
Q 016941           48 RNRFLVNDTLFFKYKKG---SDSVLL--V--NKD-DYDS-C-NTKKPLLKLDSGD---SEFKLDR-SGPFYFISGNHDHC  113 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG---~HSVve--V--nK~-dYds-C-n~snpI~~fSsGn---dvVtLdk-pG~yYFICGV~gHC  113 (380)
                      .++++.||+|++++.+.   .++|..  +  ... ..|. . .....   ...|.   ..|+++. +|+|||-|-...|=
T Consensus        27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~---i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~  103 (117)
T PF07732_consen   27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCP---IAPGESFTYEFTANQQAGTYWYHSHVHGQQ  103 (117)
T ss_dssp             EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSS---BSTTEEEEEEEEESSCSEEEEEEECSTTHH
T ss_pred             EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCccccccee---EEeecceeeeEeeeccccceeEeeCCCchh
Confidence            45899999999999864   244433  1  111 0111 0 01111   12232   3788888 99999999998865


Q ss_pred             CCCCeEEEEecCC
Q 016941          114 QKGQKLIVVVLHE  126 (380)
Q Consensus       114 q~GMKLaInV~as  126 (380)
                      ..||--.|.|...
T Consensus       104 ~~GL~G~~iV~~~  116 (117)
T PF07732_consen  104 VMGLYGAIIVEPP  116 (117)
T ss_dssp             HTTEEEEEEEE-T
T ss_pred             cCcCEEEEEEcCC
Confidence            5899888887643

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional

Probab=85.22  E-value=5.9  Score=40.88  Aligned_cols=28  Identities=21%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             EEEeccccceEEEeCCCCcCCCCCeEEEEecCC
Q 016941           94 EFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHE  126 (380)
Q Consensus        94 vVtLdkpG~yYFICGV~gHCq~GMKLaInV~as  126 (380)
                      +++| ++|+|.|+|+.  |  ..||-.|+|...
T Consensus        91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~  118 (375)
T PRK10378         91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGE  118 (375)
T ss_pred             EEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence            4566 69999999976  4  335667777653

>TIGR02866 CoxB cytochrome c oxidase, subunit II

Probab=85.03  E-value=2.3  Score=39.14  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=41.8

Q ss_pred             CCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCC---CCeEEE
Q 016941           48 RNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQK---GQKLIV  121 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~---GMKLaI  121 (380)
                      ...+.+|+.++|.-..  .||+-    +|.-=+..... ..-.|.   ..++.+++|.|++.|..  .|..   .|++.|
T Consensus       118 ~l~vp~g~~v~~~~ts--~DV~H----sf~ip~~~~k~-da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v  188 (201)
T TIGR02866       118 ELVVPAGTPVRLQVTS--KDVIH----SFWVPELGGKI-DAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLMLFKV  188 (201)
T ss_pred             EEEEEcCCEEEEEEEe--Cchhh----cccccccCceE-EecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCeEEE
Confidence            3467888888888765  33321    11111111110 011232   25788999999999997  6655   499999


Q ss_pred             EecCC
Q 016941          122 VVLHE  126 (380)
Q Consensus       122 nV~as  126 (380)
                      .|...
T Consensus       189 ~v~~~  193 (201)
T TIGR02866       189 VVVER  193 (201)
T ss_pred             EEECH
Confidence            88753

Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.

>PLN02354 copper ion binding / oxidoreductase

Probab=84.40  E-value=5.1  Score=42.75  Aligned_cols=74  Identities=11%  Similarity=0.085  Sum_probs=47.6

Q ss_pred             CeEecCceeeeeeecCC--------ceEEEecccC-----CCCCCCCCCccccCCCCcEEEe-ccccceEEEeCCCCcCC
Q 016941           49 NRFLVNDTLFFKYKKGS--------DSVLLVNKDD-----YDSCNTKKPLLKLDSGDSEFKL-DRSGPFYFISGNHDHCQ  114 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG~--------HSVveVnK~d-----YdsCn~snpI~~fSsGndvVtL-dkpG~yYFICGV~gHCq  114 (380)
                      ++++.||+|+.+..+..        |-+.+.....     +..|-+.-.    .+=..+|++ +..|+|||=+-...+-.
T Consensus        60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG----~sf~Y~F~~~~q~GT~WYHsH~~~Q~~  135 (552)
T PLN02354         60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPG----TNFTYHFQPKDQIGSYFYYPSTGMHRA  135 (552)
T ss_pred             EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCC----CcEEEEEEeCCCCcceEEecCccceec
Confidence            47899999999887642        4455432211     223522211    111136777 47899999998877888


Q ss_pred             CCCeEEEEecCC
Q 016941          115 KGQKLIVVVLHE  126 (380)
Q Consensus       115 ~GMKLaInV~as  126 (380)
                      .||.-.|.|...
T Consensus       136 ~Gl~G~lII~~~  147 (552)
T PLN02354        136 AGGFGGLRVNSR  147 (552)
T ss_pred             CCccceEEEcCC
Confidence            899888888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
1ws7_A	109	Crystal Structure Of Mavicyanin From Cucurbita Pepo		1e-14
1x9r_A	116	Umecyanin From Horse Raddish- Crystal Structure Of		2e-09
2cbp_A	96	Cucumber Basic Protein, A Blue Copper Protein Lengt		1e-08
1f56_A	91	Spinach Plantacyanin Length = 91		2e-05
1jer_A	138	Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138		1e-04

>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 51/96 (53%)
Query: 28  VGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLK 87
           VG   GW T    +Y KW+  N+F V D+L F Y     +VL V+++ + SCN+  P   
Sbjct: 7   VGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAAS 66
Query: 88  LDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVV 123
             SG     L R G FYF+ G   HCQ GQK+ + V
Sbjct: 67  YTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 26  FNVGGKHGWV--TNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKK 83
           ++VGG   W   ++P + Y  W+    F V D L F +  G   V +V KD +D+C  + 
Sbjct: 4   YDVGGDMEWKRPSDP-KFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62
Query: 84  PLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
           P+  + +   +  L+ +GP Y+I    DHC+ GQKL + V+
Sbjct: 63  PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103

>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 28  VGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLK 87
           VGG  GW  N       W    RF   D L F Y     +V++VN+  + +CNT      
Sbjct: 5   VGGSGGWTFN----TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 88  LDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
             SG  + KL + G  YFI     HCQ G K+ V  L
Sbjct: 61  YTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96

>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 35  VTNPGENYNKWSGRNR-FLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDS 93
           V N G ++N    R + F   D L FKY KG  +V+ VN   Y SC+  +      SG  
Sbjct: 2   VYNIGWSFNVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQD 61
Query: 94  EFKLDRSGPFYFISGNHDHCQKGQKLIV 121
             KL R G  YFI     HC  G K+ +
Sbjct: 62  RIKLTR-GQNYFICSFPGHCGGGMKIAI 88

>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 28  VGGKHGWVTNPGEN-YNKWSGRNRFLVNDTLFFKYKKGSDSV-LLVNKDDYDSCN----- 80
           VG   GW      N Y++W+    F V D+L F +   + +V  +  K  +D+CN     
Sbjct: 8   VGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSD 67
Query: 81  ----TKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
                  P+++        +LD  G  YF+     HC  GQKL + V+
Sbjct: 68  NDVERTSPVIE--------RLDELGMHYFVCTVGTHCSNGQKLSINVV 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	2e-41
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	4e-39
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	2e-38
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	8e-36
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	4e-27
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-26
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-26
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-24
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-22
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-14
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-26
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-25
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	8e-23
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-22
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-21
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-20
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	9e-20
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-16
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-08
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-08
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-08
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	3e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	8e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	3e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	9e-04
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	9e-05
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	2e-04
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	3e-04
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	7e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-04
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	2e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	8e-04

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score =  140 bits (354), Expect = 2e-41
 Identities = 39/107 (36%), Positives = 52/107 (48%)

Query: 23  ALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTK 82
           A    VG   GW T    +Y KW+  N+F V D+L F Y     +VL V+++ + SCN+ 
Sbjct: 2   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61

Query: 83  KPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERPP 129
            P     SG     L R G FYF+ G   HCQ GQK+ + V      
Sbjct: 62  SPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSS 108

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score =  133 bits (337), Expect = 4e-39
 Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 26  FNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPL 85
           + VGG  GW  N       W    RF   D L F Y     +V++VN+  + +CNT    
Sbjct: 3   YVVGGSGGWTFN----TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA 58

Query: 86  LKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
               SG  + KL + G  YFI     HCQ G K+ V  L
Sbjct: 59  KVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score =  133 bits (335), Expect = 2e-38
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 26  FNVGGKHGWVTNPG-ENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP 84
           ++VGG   W      + Y  W+    F V D L F +  G   V +V KD +D+C  + P
Sbjct: 4   YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 63

Query: 85  LLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERPPPPSTGPP 136
           +  + +   +  L+ +GP Y+I    DHC+ GQKL + V+          P 
Sbjct: 64  ISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGATPG 115

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91

 Score =  125 bits (315), Expect = 8e-36
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 31  KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDS 90
             GW           +    F   D L FKY KG  +V+ VN   Y SC+  +      S
Sbjct: 4   NIGWSF-----NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSS 58

Query: 91  GDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVV 123
           G    KL R G  YFI     HC  G K+ +  
Sbjct: 59  GQDRIKLTR-GQNYFICSFPGHCGGGMKIAINA 90

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score =  103 bits (258), Expect = 4e-27
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 3/135 (2%)

Query: 22  HALKFNVGGKHGWVTNPGEN-YNKWSGRNRFLVNDTLFFKYKKGSDSVLLV-NKDDYDSC 79
            +    VG   GW      N Y++W+    F V D+L F +   + +V  +  K  +D+C
Sbjct: 2   QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDAC 61

Query: 80  NTKKPLLKL-DSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERPPPPSTGPPTT 138
           N       +  +     +LD  G  YF+     HC  GQKL + V+          P ++
Sbjct: 62  NFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPPPSSS 121

Query: 139 KPPPHAPSPKSPSPA 153
            P    P P  P P+
Sbjct: 122 PPSSVMPPPVMPPPS 136

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  109 bits (273), Expect = 5e-26
 Identities = 81/235 (34%), Positives = 109/235 (46%), Gaps = 24/235 (10%)

Query: 128  PPPPSTGPPTTKPPPHAPSPKSPSPATQPPA---TSPSTSPTSHAPSANPPKGSSPTPAT 184
                  G  T+    +  +P SP      P    TSP+ SPTS A S   P  S  +P+ 
Sbjct: 1511 YGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSY 1570

Query: 185  SPSTSSPYPPKG--YSP----VPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS-S 237
            SP TS  Y P    YSP       TSPS SP+S + SP  P  YSP   TSPS SP+S S
Sbjct: 1571 SP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSP---TSPSYSPTSPS 1625

Query: 238  QSPAANAPTGLSPA-PGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPT 296
             SP + + +  SP+   TSPS SP+S   +  +P     +P  SP TSPS  P + +   
Sbjct: 1626 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP-TSPSYSPTSPS--- 1681

Query: 297  GVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTS 351
              SP   +   TSP   P+SP  +P+   S   +P      P     + + ++ S
Sbjct: 1682 -YSPTSPSYSPTSPNYSPTSPSYSPT---SPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  109 bits (272), Expect = 6e-26
 Identities = 71/232 (30%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 130  PPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS 189
            P S                  SP     +        +    A+  + +SP  A   + +
Sbjct: 1472 PYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPT 1531

Query: 190  SPYPPK---GYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
            SP       G+SP   TSP+ SP+S A SP  P      P+ SP TSPS S +  + +PT
Sbjct: 1532 SPGFGVSSPGFSP---TSPTYSPTSPAYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPT 1587

Query: 247  GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPG---TSPSTSPSSQPPAANAPTGVSPPPG 303
              S +P TSPS SP+S   +  +P+    +P    TSPS SP+S   +  +P+     P 
Sbjct: 1588 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1646

Query: 304  TSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVS 355
             SP TSP   P+SP  +P+    + ++P+     PS S +  S S TS   S
Sbjct: 1647 YSP-TSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYS 1697

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  104 bits (261), Expect = 2e-24
 Identities = 77/232 (33%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 129  PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
            P   +G              +       P  +   +PTS     + P  S  +P  SP T
Sbjct: 1494 PLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP-T 1552

Query: 189  SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSP-SSSQSPAANAPTG 247
            S  Y P   S  P TSPS SP+S + SP  P  YSP   TSPS SP S S SP + + + 
Sbjct: 1553 SPAYSPTSPSYSP-TSPSYSPTSPSYSPTSPS-YSP---TSPSYSPTSPSYSPTSPSYSP 1607

Query: 248  LSPAPG-TSPSTSPSSQPPAANAPTGLSPAP---GTSPSTSPSSQPPAANAPTGVSPPPG 303
             SP+   TSPS SP+S   +  +P+    +P    TSPS SP+S   +  +P      P 
Sbjct: 1608 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667

Query: 304  TSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVS 355
             SP TSP   P+SP  +P+    + ++P      PS S +    S  S A S
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 99.0 bits (246), Expect = 2e-22
 Identities = 71/244 (29%), Positives = 105/244 (43%), Gaps = 13/244 (5%)

Query: 117  QKLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPK 176
            + L+  +  ++      G      P    S    +          S    S +  A    
Sbjct: 1448 ESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG 1507

Query: 177  GSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS 236
             ++   A     +SP+   G +P   TSP    SS   SP  P  YSP   TSP+ SP+S
Sbjct: 1508 FTAYGGADYGEATSPFGAYGEAP---TSPGFGVSSPGFSPTSP-TYSP---TSPAYSPTS 1560

Query: 237  -SQSPAANAPTGLSPAPG-TSPSTSPSSQPPAANAP--TGLSPAPG-TSPSTSPSSQPPA 291
             S SP + + +  SP+   TSPS SP+S   +  +P  +  SP+   TSPS SP+S P  
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSY 1619

Query: 292  ANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTS 351
            +      SP   +   TSP   P+SP  +P+    + ++PA     PS S +  S S TS
Sbjct: 1620 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTS 1679

Query: 352  SAVS 355
             + S
Sbjct: 1680 PSYS 1683

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 72.4 bits (177), Expect = 8e-14
 Identities = 50/148 (33%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 127  RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
             P  PS  P +    P +PS    SP+  P  TSPS SPTS + S   P  S  +P+ SP
Sbjct: 1592 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649

Query: 187  STS--SPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANA 244
            ++   SP  P      P+ SP+ SPS    SP     YSP   +   TSP+ S +  + +
Sbjct: 1650 TSPSYSPTSPAYSPTSPSYSPT-SPSYSPTSP----SYSPTSPSYSPTSPNYSPTSPSYS 1704

Query: 245  PTGLSPAPGTSPSTSPSSQPPAANAPTG 272
            PT    +P  SP+ SP       N    
Sbjct: 1705 PTSPGYSP-GSPAYSPKQDEQKHNENEN 1731

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score =  109 bits (272), Expect = 7e-26
 Identities = 82/222 (36%), Positives = 110/222 (49%), Gaps = 15/222 (6%)

Query: 128  PPPPSTGPPTTKPPPHAPSPKSPSPATQPP--ATSPSTSPTSHAPSANPPKGSSPTPATS 185
             P  S   P       + SP SP  +T P    +SPS SPTS + S   P  S  +P+ S
Sbjct: 1541 SPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYS 1600

Query: 186  PSTSSPYPP-KGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANA 244
            P++ S       YSP   TSPS SP+S + SP  P  YSP   +   TSPS S +  + +
Sbjct: 1601 PTSPSYSATSPSYSP---TSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYS 1656

Query: 245  PTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGT 304
            PT  S +P TSPS SP+S   +  +P        TSPS SP+S   +  +P+     P  
Sbjct: 1657 PTSPSYSP-TSPSYSPTSPSYSPTSP----SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711

Query: 305  SPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTS 346
            SP TSP   P+SP  +P+    + ++P     P SPS S TS
Sbjct: 1712 SP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTS 1750

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score =  107 bits (269), Expect = 2e-25
 Identities = 89/237 (37%), Positives = 121/237 (51%), Gaps = 21/237 (8%)

Query: 128  PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
                +  P      P   SP S + +     TSPS SP+S   S +P      +P+ SP 
Sbjct: 1523 GLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPA-YMPSSPSYSP- 1580

Query: 188  TSSPYPPK--GYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS-SQSPAANA 244
            TS  Y P    YSP   TSPS SP+S + S   P  YSP   TSPS SP+S S SP + +
Sbjct: 1581 TSPSYSPTSPSYSP---TSPSYSPTSPSYSATSP-SYSP---TSPSYSPTSPSYSPTSPS 1633

Query: 245  PTGLSPA-PGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPG 303
             +  SP+   TSPS SP+S    + +PT  S +P TSPS SP+S   +  +P+     P 
Sbjct: 1634 YSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS 1689

Query: 304  TSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQT-SSAVSTPLS 359
             SP TSP   P+SP  +P+    + ++P+    P SPS S TS S + +S   +P S
Sbjct: 1690 YSP-TSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTS 1743

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 99.8 bits (248), Expect = 8e-23
 Identities = 72/235 (30%), Positives = 104/235 (44%), Gaps = 13/235 (5%)

Query: 125  HERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
               P   S    +      +P  +  S   +           S       P  +SP  + 
Sbjct: 1487 ERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSA 1546

Query: 185  SPSTSSPYPPK--GYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS-SQSPA 241
                     P     SP  +TSP+  PSS + SP  P  YSP   TSPS SP+S S SP 
Sbjct: 1547 MSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSP-SYSP---TSPSYSPTSPSYSPT 1602

Query: 242  ANAPTGLSPAPG-TSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSP 300
            + + +  SP+   TSPS SP+S    + +PT  S +P TSPS SP+S   +  +P+  SP
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSP---SYSPTSPSYSP-TSPSYSPTSPSYSPTSPS-YSP 1657

Query: 301  PPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVS 355
               +   TSP   P+SP  +P+    + ++P+     PS S +  S S TS + S
Sbjct: 1658 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 97.1 bits (241), Expect = 7e-22
 Identities = 75/247 (30%), Positives = 105/247 (42%), Gaps = 19/247 (7%)

Query: 121  VVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPA----TSPSTSPTSHAPSANPPK 176
              +    P    +G  T++ P  A +P   SP           + + SP     S     
Sbjct: 1459 YSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREG 1518

Query: 177  GSSPTP--ATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPS--- 231
                    A SP      P        A SP    +S + SP  P GYS  PA  PS   
Sbjct: 1519 FGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSP-GYSTSPAYMPSSPS 1577

Query: 232  ---TSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQ 288
               TSPS S +  + +PT  S +P TSPS S +S    + +PT  S +P TSPS SP+S 
Sbjct: 1578 YSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSATSP---SYSPTSPSYSP-TSPSYSPTSP 1632

Query: 289  PPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGS 348
              +  +P+     P  SP TSP   P+SP  +P+    + ++P+     PS S +  S S
Sbjct: 1633 SYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691

Query: 349  QTSSAVS 355
             TS + S
Sbjct: 1692 PTSPSYS 1698

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 95.9 bits (238), Expect = 1e-21
 Identities = 73/232 (31%), Positives = 104/232 (44%), Gaps = 18/232 (7%)

Query: 130  PPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS 189
            P    P        +P   + SP  Q  +             A  P     +P  +   S
Sbjct: 1485 PYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFS 1544

Query: 190  SPYPPKGYSPVPATSPSTSPSSHAPSPYPPK--GYSPVPATSPSTSPSS-SQSPAANAPT 246
            S   P GY     +   +SP       Y P    YSP   TSPS SP+S S SP + + +
Sbjct: 1545 SAMSP-GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSP---TSPSYSPTSPSYSPTSPSYS 1600

Query: 247  GLSPAPG-TSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTS 305
              SP+   TSPS SP+S    + +PT  S +P TSPS SP+S    + +PT  S  P TS
Sbjct: 1601 PTSPSYSATSPSYSPTSP---SYSPTSPSYSP-TSPSYSPTSP---SYSPTSPSYSP-TS 1652

Query: 306  PSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
            PS SP +   SP  +PS +P+ S + +  +P  SP+    S +  S + ++P
Sbjct: 1653 PSYSPTSPSYSP-TSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 91.3 bits (226), Expect = 4e-20
 Identities = 79/219 (36%), Positives = 103/219 (47%), Gaps = 42/219 (19%)

Query: 128  PPPPSTGPPTTKPPPHAP--------SPKSP-----SPATQPP-----ATSPSTSPTSHA 169
               P  G  +    P +P         P SP     SP+  P       TSPS SPTS +
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1605

Query: 170  PSANPPKGSSPTPATSPSTSSPYP-PKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPAT 228
             SA  P  S  +P+ SP++ S  P    YSP   TSPS SP+S + SP  P  YSP   +
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPS-YSPTSPS 1661

Query: 229  SPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPG---------- 278
               TSPS S +  + +PT  S +P TSPS SP+S   +  +P+    +P           
Sbjct: 1662 YSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720

Query: 279  TSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSP 317
            TSPS SP+S    + +PT     P  SP TSP   P+SP
Sbjct: 1721 TSPSYSPTSP---SYSPT----SPSYSP-TSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 90.5 bits (224), Expect = 9e-20
 Identities = 61/211 (28%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 149  SPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTS 208
              S   +   T    SP   +     P  ++ +P     +        Y  + A SP   
Sbjct: 1474 GTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKG 1533

Query: 209  PSSHAPSPYPPKGYSP-VPATSPSTSPSSSQSPAANAPTGLSPAPG-TSPSTSPSSQPPA 266
              S   +       SP    TSPS SPSS     + A    SP+   TSPS SP+S    
Sbjct: 1534 VQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP--- 1590

Query: 267  ANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPS 326
            + +PT  S +P TSPS S +S   +  +P+     P  SP TSP   P+SP  +P+    
Sbjct: 1591 SYSPTSPSYSP-TSPSYSATSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSY 1648

Query: 327  NSSNPAGGTPPPSPSGSQTSGSQTSSAVSTP 357
            + ++P+     PS S +  S S TS + S  
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1679

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 80.9 bits (199), Expect = 1e-16
 Identities = 64/206 (31%), Positives = 89/206 (43%), Gaps = 16/206 (7%)

Query: 159  TSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYP 218
                 +       +       P  A +P   SP    G+   P  + + SP     S   
Sbjct: 1458 NYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSP-DAAAFSPLVQGGSEGR 1516

Query: 219  PKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPG---TSPSTSPSSQPPAANAPTGLSP 275
              G+        ++     QSP   +P   + +PG   TSPS SPSS P  + +P  +  
Sbjct: 1517 E-GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSS-PGYSTSPAYMPS 1574

Query: 276  APGTSPSTSPSSQPPA-ANAPTGVSPPPGTSPS---TSPPAVPSSPGNAPSLAPSNSSNP 331
            +P  SP TSPS  P + + +PT  S  P TSPS   TSP   P+SP  +P+ +PS S   
Sbjct: 1575 SPSYSP-TSPSYSPTSPSYSPTSPSYSP-TSPSYSATSPSYSPTSPSYSPT-SPSYSPTS 1631

Query: 332  AGGTPPPSPSGSQTSG--SQTSSAVS 355
               +P  SPS S TS   S TS + S
Sbjct: 1632 PSYSPT-SPSYSPTSPSYSPTSPSYS 1656

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 46/104 (44%), Positives = 55/104 (52%), Gaps = 15/104 (14%)

Query: 128  PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
            P  PS  P +    P +PS    SP+  P  TSPS SPTS + S   P  S  +P+ SP 
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSP- 1720

Query: 188  TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPS 231
             +SP     YSP   TSPS SP+S + SP  P  YSP   TSPS
Sbjct: 1721 -TSP----SYSP---TSPSYSPTSPSYSPTSP-SYSP---TSPS 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 10/129 (7%)

Query: 235  SSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGT-SPSTSPSSQPPAAN 293
            S   +    A +G+  +     + +P  + P  ++    SP     SP     S+     
Sbjct: 1460 SLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREG- 1518

Query: 294  APTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTP---PPSPSGSQTSGSQT 350
                     G   + SP     SPG     + + S      +P   P SP  S +     
Sbjct: 1519 -----FGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMP 1573

Query: 351  SSAVSTPLS 359
            SS   +P S
Sbjct: 1574 SSPSYSPTS 1582

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.1 bits (168), Expect = 7e-13
 Identities = 24/182 (13%), Positives = 41/182 (22%), Gaps = 2/182 (1%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
                   P  +P    P       A           P    PS    +  +P       
Sbjct: 14  LQYGQNATPLQQPAQFMPPQ--DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71

Query: 188 TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTG 247
                            P   P+++     P +  +P+       +  +   P+A     
Sbjct: 72  QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131

Query: 248 LSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPS 307
           + P     P    +  PP     T   P     P         +  +P  +       P 
Sbjct: 132 MRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPK 191

Query: 308 TS 309
            S
Sbjct: 192 NS 193

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.5 bits (164), Expect = 2e-12
 Identities = 28/191 (14%), Positives = 44/191 (23%), Gaps = 3/191 (1%)

Query: 143 HAPSPKSPSPATQPPATS-PSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVP 201
           H      P    Q    + P   P    P  +P                  P  G     
Sbjct: 3   HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62

Query: 202 ATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPS 261
             +P+                       P   P++   P      G        P  +P+
Sbjct: 63  --TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120

Query: 262 SQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAP 321
              P+A     + P     P    +  PP     T   PP    P         S  +  
Sbjct: 121 YGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPD 180

Query: 322 SLAPSNSSNPA 332
            +  + ++ P 
Sbjct: 181 YIRSTLNAVPK 191

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 29/196 (14%), Positives = 53/196 (27%), Gaps = 5/196 (2%)

Query: 172 ANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPS 231
           ++  K   P        ++    +    +P   P+ +  S+     PP+G  P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 232 TSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQP----PAANAPTGLSPAPGTSPSTSPSS 287
            +P+  Q          S       +           P      G        P  +P+ 
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 288 QPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSG 347
             P+A     + P     P      +P    +     P     P      PS   + +  
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPP-PLVIPPERMLVPSELSNASPD 180

Query: 348 SQTSSAVSTPLSLGLL 363
              S+  + P +  LL
Sbjct: 181 YIRSTLNAVPKNSSLL 196

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 1/177 (0%)

Query: 154 TQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHA 213
           +         +   +  +A P +  +         ++          P  +  +      
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 214 PSPYPPKGY-SPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTG 272
            +P   + +     AT+          P  +    + P       T    Q     AP  
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 273 LSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSS 329
             P+     +  P +Q    +  T + PP        PP V            SN+S
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNAS 178

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 29/148 (19%), Positives = 42/148 (28%), Gaps = 12/148 (8%)

Query: 142 PHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVP 201
            H                S  TSPT     A            +PS      P   SP  
Sbjct: 4   HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMA------------APSLHPSLGPGIGSPGQ 51

Query: 202 ATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPS 261
             SP ++ SS      PP      P    S S  ++ +   +  +    +P    S+S  
Sbjct: 52  LHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSED 111

Query: 262 SQPPAANAPTGLSPAPGTSPSTSPSSQP 289
            +PP         PA  +    S +   
Sbjct: 112 IKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 23/150 (15%), Positives = 34/150 (22%), Gaps = 15/150 (10%)

Query: 168 HAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPA 227
                +         +T  ++S              SP+   S  APS +P  G      
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLT------------SPTGRGSMAAPSLHPSLGPG---I 46

Query: 228 TSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSS 287
            SP    S   + ++       P    S    P S         G S       S     
Sbjct: 47  GSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPV 106

Query: 288 QPPAANAPTGVSPPPGTSPSTSPPAVPSSP 317
                  P          P+     + S  
Sbjct: 107 SSSEDIKPPLGLNGVLKVPAHPSGNMASFT 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 22/138 (15%), Positives = 34/138 (24%), Gaps = 2/138 (1%)

Query: 166 TSHAPSANPPKGSSPTPATSPSTSSPY-PPKGYSPVPATSPSTSPSSHAPSPYPPKGYS- 223
             H            +   + S +SP       +P    S      S      P    S 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 224 PVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPST 283
           P+    P  S  SS     +     +P  G S  +   S P    + +     P      
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 284 SPSSQPPAANAPTGVSPP 301
                 P+ N  +     
Sbjct: 122 LKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 2/137 (1%)

Query: 234 PSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAAN 293
               +  +    + L+   G     +PS  P     P   SP    SP ++ SS      
Sbjct: 10  DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPS--LGPGIGSPGQLHSPISTLSSPINGMG 67

Query: 294 APTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSA 353
            P  V   P    S S P  P+   +  S   S+  NP   +    P        +  + 
Sbjct: 68  PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127

Query: 354 VSTPLSLGLLGVSLVLG 370
            S  ++     +  + G
Sbjct: 128 PSGNMASFTKHICAICG 144

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 21/138 (15%), Positives = 35/138 (25%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
                       K      +    SP  +    +PS  P+      +P +  SP    S 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 187 STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
             +   PP      P    S S  +     +           +P +S    + P      
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 247 GLSPAPGTSPSTSPSSQP 264
              PA  +    S +   
Sbjct: 122 LKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 26/146 (17%), Positives = 41/146 (28%), Gaps = 5/146 (3%)

Query: 209 PSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAAN 268
              H                S  TSP+   S AA      S  P   P      Q  +  
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAP-----SLHPSLGPGIGSPGQLHSPI 56

Query: 269 APTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNS 328
           +           P +  SS     +     +P  G S  +   + P +P ++        
Sbjct: 57  STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPL 116

Query: 329 SNPAGGTPPPSPSGSQTSGSQTSSAV 354
                   P  PSG+  S ++   A+
Sbjct: 117 GLNGVLKVPAHPSGNMASFTKHICAI 142

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 9/141 (6%)

Query: 189 SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGL 248
           +  +           S   + S  +P+             +PS  PS    P   +P  L
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPT-------GRGSMAAPSLHPSL--GPGIGSPGQL 52

Query: 249 SPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPST 308
                T  S      PP +   + + P   + P+T        +   +    P  +S   
Sbjct: 53  HSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDI 112

Query: 309 SPPAVPSSPGNAPSLAPSNSS 329
            PP   +     P+    N +
Sbjct: 113 KPPLGLNGVLKVPAHPSGNMA 133

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 19/135 (14%), Positives = 30/135 (22%), Gaps = 4/135 (2%)

Query: 124 LHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPA 183
            H                       S +  +  P+  P         S      S     
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 184 TSPST--SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPA 241
             P +  SSP  P   S    T+P+   S+ +P    P                +     
Sbjct: 67  GPPFSVISSPMGPHSMS--VPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124

Query: 242 ANAPTGLSPAPGTSP 256
              P+G   +     
Sbjct: 125 PAHPSGNMASFTKHI 139

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 26/112 (23%), Positives = 36/112 (32%)

Query: 207 TSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPA 266
           +S   H  S       S +   S S + ++S   AA  P    P P   P  +P++  P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 267 ANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPG 318
                           T P +   A     G  P P    S  P A  + PG
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 4/114 (3%)

Query: 177 GSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSS 236
           GSS       S   P       P  + + +   +S   +   P    P PA  P  +P++
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVTSA---ASDFLAALHPPVTVPDPAPPPPPAPAA 58

Query: 237 SQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPP 290
              P                 T P +   A     G  P P    S  P++   
Sbjct: 59  GN-PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRA 111

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 6/109 (5%)

Query: 131 PSTGPPTTKPPPHAPSPKSPSPATQPPATSP--STSPTSHAPSANPPKGSSPTPATSPST 188
                 ++   P       PS +    A+    +  P    P   PP   +P     P  
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP-- 62

Query: 189 SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSS 237
                             T P + + +P    G  P P    S  P++ 
Sbjct: 63  --DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG 109

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 6/113 (5%)

Query: 232 TSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPA 291
           +S       +   P G      ++  TS +S   AA  P    P P   P  +P++  P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 292 ANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQ 344
                           T P    +S   A          P    P  +P  + 
Sbjct: 63  DTVTGDSVLQRILRGPTGPG--TTSLAPAVRYGRQ----PGPEAPASAPPAAG 109

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.1 bits (119), Expect = 7e-07
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 4/115 (3%)

Query: 226 PATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSP 285
                 +S    +      P   S +  ++ S   ++  P    P    P P    + +P
Sbjct: 5   HHHHHHSSGLVPRGSHMVIP---SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 286 SSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSP 340
                  +    +   P T P T+  A     G  P      S+ PA G   P  
Sbjct: 62  PDTVTGDSVLQRILRGP-TGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 19/134 (14%), Positives = 30/134 (22%), Gaps = 7/134 (5%)

Query: 136 PTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPK 195
                      P+         + + + S      +A  P  + P PA  P    P  P 
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASD---FLAALHPPVTVPDPAPPP----PPAPA 57

Query: 196 GYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTS 255
             +P    +  +        P  P   S  PA      P      +A    G +      
Sbjct: 58  AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117

Query: 256 PSTSPSSQPPAANA 269
                         
Sbjct: 118 HPVPEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 27/119 (22%), Positives = 35/119 (29%), Gaps = 2/119 (1%)

Query: 110 HDHCQKGQKLIVVVLHERPPPPSTGPPTTKPP-PHAPSPKSPSPATQPPATSPSTSPTSH 168
           H H      L+    H   P  S     +       P    P PA  PP    + +P   
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 169 APSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPA 227
               +  +     P T P T+S  P   Y   P      S    A    P   + PVP 
Sbjct: 65  VTGDSVLQRILRGP-TGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 8/136 (5%)

Query: 159 TSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYP 218
           +S      S            P+ + + + S               P T P    P P  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDF-------LAALHPPVTVPDPAPPPPPA 55

Query: 219 PKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPG 278
           P   +P    +  +             T  S AP       P  + PA+  P      PG
Sbjct: 56  PAAGNPPDTVTGDSVLQRILRGPTGPGTT-SLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114

Query: 279 TSPSTSPSSQPPAANA 294
                 P   P     
Sbjct: 115 LYHHPVPEPDPVRVEE 130

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 7/115 (6%)

Query: 151 SPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPS 210
           S          S      +    P    +   +   +   P       P PA  P  +P+
Sbjct: 4   SHHHHHH---SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVT---VPDPAPPPPPAPA 57

Query: 211 SHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPP 265
           +  P                 T P ++ S A     G  P P    S  P++   
Sbjct: 58  AGNPPDTVTGDSVLQRILRGPTGPGTT-SLAPAVRYGRQPGPEAPASAPPAAGRA 111

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 7/108 (6%)

Query: 253 GTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQP--PAANAPTGVSPPPGTSPSTSP 310
           G+S      S          + P+   + + S       P    P    PPP    + +P
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 311 PAVPSSPGNAPSLAPSNSSNPAG-GTPPPSPSGSQTSGSQTSSAVSTP 357
           P   +       +       P G GT   +P+          +  S P
Sbjct: 62  PDTVTGDSVLQRILRG----PTGPGTTSLAPAVRYGRQPGPEAPASAP 105

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 54.6 bits (130), Expect = 4e-08
 Identities = 23/228 (10%), Positives = 50/228 (21%), Gaps = 5/228 (2%)

Query: 110 HDHCQKGQKLIVVVLHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHA 169
           H H   G    +  L+ +    +    +             S            +  +  
Sbjct: 3   HHHHHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKL 62

Query: 170 PSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATS 229
             A     +S T + + + ++           + +     +S   +  P     P     
Sbjct: 63  EKAEGVATASETASPASNEAATTETA---EAASAAKPEEKASEVVAETPSAEAKPKSDKE 119

Query: 230 PSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQP 289
               P ++     + P   + A  T     P                  +          
Sbjct: 120 TEAKPEATNQGDESKPA--AEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPG 177

Query: 290 PAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPP 337
              +           S  T       +   A   A SN+++ A     
Sbjct: 178 AREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHAS 225

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 29/196 (14%), Positives = 50/196 (25%), Gaps = 9/196 (4%)

Query: 170 PSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATS 229
           P     K S     ++  +               +    P++  P     + Y   P  +
Sbjct: 5   PRKTKGKSSGKGNDSTERSDDGSSQL----RDKQNNKAGPATTEPGTSNREQYRARPGIA 60

Query: 230 PSTSPSSSQSPAANAPTGLSPAPGTSPS----TSPSSQPPAANAPTGLSPAPGTSPSTSP 285
                + S           +P    +         S     A+  T              
Sbjct: 61  SVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQV 120

Query: 286 SSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAG-GTPPPSPSGSQ 344
           +      N    +S              P S   A + +   S +PA  G PP + SG  
Sbjct: 121 TYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHG 180

Query: 345 TSGSQTSSAVSTPLSL 360
                 S+ + +PL L
Sbjct: 181 YQCHVCSAVLFSPLDL 196

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 145 PSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPT--PATSPSTSSPYPPKGYSPVPA 202
              K            P+   +  APSA+  +               + YPP+GY+P P 
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 203 TSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGL 248
             P        P  YPP+GY P     P        +P A  P G+
Sbjct: 399 GYPPQGYP---PQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGV 441

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 26/104 (25%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 214 PSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGL 273
                         T      SS  +P+A+A                 +  P    P G 
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYP----PQGY 393

Query: 274 SPAPGTSPSTSPSSQ--PPAANAPTGVSPPP-GTSPSTSPPAVP 314
           +P P   P      Q  PP    P G  PPP G  P  +PPA P
Sbjct: 394 APPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 1/166 (0%)

Query: 126 ERPPPPSTGPPTTKPPPHAP-SPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPAT 184
            R  PP     T  P   A  +P S +  ++  A  P+      A      +        
Sbjct: 18  PRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEV 77

Query: 185 SPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANA 244
           S  ++   P     P P      S  +    P+          +  ++    ++   A  
Sbjct: 78  SSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARV 137

Query: 245 PTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPP 290
               + A     S +P ++          +PA     + +    P 
Sbjct: 138 RALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 27/184 (14%), Positives = 38/184 (20%), Gaps = 5/184 (2%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
                GPP   PP  A    SP+        S ++     A     P      P      
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 189 SSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGL 248
                      V + S   +P   A      K     PA       +S+Q     +    
Sbjct: 71  RLSVD-----EVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELAS 125

Query: 249 SPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPST 308
                        +   +A                 P  +   A         PG     
Sbjct: 126 CLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

Query: 309 SPPA 312
            P  
Sbjct: 186 LPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 44.0 bits (102), Expect = 7e-05
 Identities = 26/186 (13%), Positives = 41/186 (22%), Gaps = 13/186 (6%)

Query: 174 PPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTS 233
           P       P  +  T SP  P   +P  ATS S                +  PA      
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKR-------------ARPPAAPGRDQ 61

Query: 234 PSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAAN 293
                            +P T  +    + P         +PA G  P  + +      +
Sbjct: 62  ARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTIS 121

Query: 294 APTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSA 353
                        +       S+     S  P     P       +P+  +         
Sbjct: 122 ELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGL 181

Query: 354 VSTPLS 359
               L 
Sbjct: 182 PGLVLP 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 23/162 (14%), Positives = 38/162 (23%)

Query: 199 PVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPST 258
           P P        +   PSP  P   +P  ATS S   +   +                 S 
Sbjct: 15  PGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSV 74

Query: 259 SPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPG 318
              S P    AP   +           +         T        S   S        G
Sbjct: 75  DEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELG 134

Query: 319 NAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSL 360
                  +++ +      P +    +    + + A     +L
Sbjct: 135 ARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHAL 176

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 2/111 (1%)

Query: 130 PPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS 189
           P S G P       A +    +PA  PPA   + +          PK  +P      + +
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPA--PPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 190 SPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSP 240
                           + +  ++     PP G + V    P   P+  +  
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQ 113

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 12/84 (14%), Positives = 24/84 (28%)

Query: 147 PKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPS 206
           P +P+    P   + + +      +  PP   +          +  P     P PA   +
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 207 TSPSSHAPSPYPPKGYSPVPATSP 230
           T  + HA      +        + 
Sbjct: 62  TVAAGHATLREHLRDIKAENTDAN 85

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 12/95 (12%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 249 SPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPST 308
           +P    +P  + ++Q       T     P    + +   +P     P   +PP     + 
Sbjct: 4   APTSPGTPGVAAATQAANGGPAT--PAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 309 SPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGS 343
           +  A  ++         + +++      PP    +
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 9/88 (10%), Positives = 16/88 (18%), Gaps = 2/88 (2%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
           P  P     T        +P  P+    P                 P          +  
Sbjct: 8   PGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGH 67

Query: 188 TSSPYPPKGYSPVPATSP--STSPSSHA 213
            +     +        +      P + A
Sbjct: 68  ATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 7/102 (6%)

Query: 234 PSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAAN 293
           P++  SP        + A    P+T       A       +P     P  +   + P   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGA-------APTGDPKPKKNKKPKNPTPP 54

Query: 294 APTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGT 335
            P G +       +T    +                 P G T
Sbjct: 55  RPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 7/100 (7%)

Query: 157 PATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYSPVPATSPSTSPSSHAPSP 216
           PA   S      A +     G   TPA     ++P      +  P    +  P +  P  
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAP------TGDPKPKKNKKPKNPTPPR 55

Query: 217 YPPKGYSP-VPATSPSTSPSSSQSPAANAPTGLSPAPGTS 255
                 +      +        ++   +A   + P P  +
Sbjct: 56  PAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 5/113 (4%)

Query: 198 SPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPS 257
           +P    +P  + ++ A +  P       PA     +  +            +P P     
Sbjct: 4   APTSPGTPGVAAATQAANGGPAT-----PAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58

Query: 258 TSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSP 310
            + +     A     L      +   +    PP   A       P   P+   
Sbjct: 59  DNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPE 111

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 24/146 (16%), Positives = 35/146 (23%), Gaps = 10/146 (6%)

Query: 129 PPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPST 188
           P  +    ++       +   P     P          +  P A   KG    P+   + 
Sbjct: 22  PAKTKKGLSSILDAARWNRGEPQ---VPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNI 78

Query: 189 SSP---YPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAP 245
            +P    P     P+   SP   P + AP           P    S    +         
Sbjct: 79  GAPGQDTPGVSLHPLSLDSPDREPGADAPLELG----DSSPQGPMSLESLAPPESTDEGA 134

Query: 246 TGLSPAPGTSPSTSPSSQPPAANAPT 271
              SP PG       S        P 
Sbjct: 135 ETESPEPGDEGEPGRSGLELEPEEPP 160

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 19/150 (12%), Positives = 34/150 (22%), Gaps = 1/150 (0%)

Query: 139 KPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTSSPYPPKGYS 198
           +P        S   A +     P      H  +    +    T         P   +   
Sbjct: 21  EPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATD-RKGGVGMPSRDRNIG 79

Query: 199 PVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPST 258
                +P  S    +      +  +  P     +SP    S  + AP   +     + S 
Sbjct: 80  APGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESP 139

Query: 259 SPSSQPPAANAPTGLSPAPGTSPSTSPSSQ 288
            P  +     +   L P             
Sbjct: 140 EPGDEGEPGRSGLELEPEEPPGWRELVPPD 169

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 24/165 (14%), Positives = 33/165 (20%), Gaps = 8/165 (4%)

Query: 148 KSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS-SPYPPKGYSPVPATSPS 206
           +S  PA      S                      A   +        KG   +P+   +
Sbjct: 18  RSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRN 77

Query: 207 T-SPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPP 265
             +P    P        S  P +  S                    P +  S +P     
Sbjct: 78  IGAPGQDTPGV------SLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTD 131

Query: 266 AANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSPSTSP 310
                    P     P  S     P          PP T  S   
Sbjct: 132 EGAETESPEPGDEGEPGRSGLELEPEEPPGWRELVPPDTLHSLPK 176

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 16/128 (12%), Positives = 28/128 (21%), Gaps = 13/128 (10%)

Query: 225 VPATSPSTSPSSSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTS 284
           V     S  P+ ++   ++         G  P         A               +  
Sbjct: 13  VMGNRRSDEPAKTKKGLSSILDAARWNRG-EPQVPDFRHLKAE------------VDAEK 59

Query: 285 PSSQPPAANAPTGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQ 344
           P +                 +P    P V   P +  S      ++        SP G  
Sbjct: 60  PGATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPM 119

Query: 345 TSGSQTSS 352
           +  S    
Sbjct: 120 SLESLAPP 127

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 28/95 (29%)

Query: 130 PPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPSTS 189
           P        +P P  P P + SP   P + + S    S A     P   SP  +      
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 190 SPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSP 224
           S           A + + S      S    +G + 
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAA 113

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 5/108 (4%)

Query: 236 SSQSPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAP 295
           S  +  AN P G            P     +  A  G +       S   +S      +P
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAA-----ASAERASTAAPVASP 64

Query: 296 TGVSPPPGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGS 343
              SP              +      + A + S    GG+      G+
Sbjct: 65  AAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGA 112

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 13/84 (15%), Positives = 27/84 (32%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
           PPPP +       P  A +    +    P A+  + SP S          S+    T+ +
Sbjct: 32  PPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAA 91

Query: 188 TSSPYPPKGYSPVPATSPSTSPSS 211
            ++ +  +            + + 
Sbjct: 92  AAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 8/93 (8%), Positives = 20/93 (21%)

Query: 128 PPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSPS 187
                   P +       +  +   A+    +  S+       S +     +   A +  
Sbjct: 37  SAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATF 96

Query: 188 TSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPK 220
           +       G +     +         P     K
Sbjct: 97  SEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAK 129

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 1/88 (1%)

Query: 124 LHERPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPA 183
           L    PPP      +       +  S   A+     +   +P+    S      SS + A
Sbjct: 26  LQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP-GSSGGGGFFSSLSNA 84

Query: 184 TSPSTSSPYPPKGYSPVPATSPSTSPSS 211
              +T++            +  +    +
Sbjct: 85  VKQTTAAAAATFSEQVGGGSGGAGRGGA 112

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 26/236 (11%), Positives = 53/236 (22%), Gaps = 14/236 (5%)

Query: 127 RPPPPSTGPPTTKPPPHAPSPKSPSPATQPPATSPSTSPTSHAPSANPPKGSSPTPATSP 186
                      T P P   +   P+      ++   ++      +     G +       
Sbjct: 126 SNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPA 185

Query: 187 STSSPYPPKGYSPVPATSPSTSPSSHAPSPYPPKGYSPVPATSPSTSPSSSQSPAANAPT 246
            T + +P  G   +       +    +         S V       S + ++S       
Sbjct: 186 CTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSH----- 240

Query: 247 GLSPAPGTSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPPPGTSP 306
                     + S SS   ++     LS         S +++    N  T  +       
Sbjct: 241 ---------SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQN 291

Query: 307 STSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPLSLGL 362
             S   V    G +     +              S  + S            +  L
Sbjct: 292 VVSVNGVDMRKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNAL 347

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 19/117 (16%), Positives = 30/117 (25%), Gaps = 6/117 (5%)

Query: 244 APTGLSPAPG--TSPSTSPSSQPPAANAPTGLSPAPGTSPSTSPSSQPPAANAPTGVSPP 301
               +   P   T  S   +    +   P   +  P T    SP    P       + P 
Sbjct: 7   MSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPI---SMTMPPH 63

Query: 302 PGTSPSTSPPAVPSSPGNAPSLAPSNSSNPAGGTPPPSPSGSQTSGSQTSSAVSTPL 358
                  +    PS    +    P  +S+P            QTS   +   +   L
Sbjct: 64  GSLQGYQTYGHFPSRAIKSEYPDPY-TSSPESIMGYSYMDSYQTSSPASIPHLILEL 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	100.0
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	100.0
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	100.0
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	100.0
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	99.97
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	99.33
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	99.25
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	99.07
2cal_A	154	Rusticyanin; iron respiratory electron transport c	99.04
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	99.02
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	99.01
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	98.98
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.97
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	98.96
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	98.96
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	98.93
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	98.89
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	98.88
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	98.81
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	98.79
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	98.79
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	98.79
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	98.57
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	98.37
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	98.31
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	98.26
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	98.22
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	98.19
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	98.13
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	98.06
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	97.99
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	97.97
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	97.97
1iko_P	178	Ephrin-B2; greek KEY, glycosylation, signaling pro	97.56
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	97.29
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	97.16
2x11_B	177	Ephrin-A5; receptor-signaling protein complex, dev	97.1
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	96.58
2vsm_B	140	Ephrin-B2; developmental protein, henipavirus, neu	96.51
3czu_B	182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	96.18
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	95.36
3d12_B	141	Ephrin-B3; beta propeller, protein-receptor comple	95.16
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	95.04
1shx_A	138	Ephrin-A5; ephrin signaling, hormone-growth factor	94.88
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	93.37
2wo3_B	157	Ephrin-A2; transferase-signaling protein complex,	93.04
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	87.83
3hei_B	132	Ephrin-A1; EPH receptor tyrosine kinase, cell memb	87.33
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	86.77
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	85.25
3hb3_B	298	Cytochrome C oxidase subunit 2; electron transfer,	83.93
1kbv_A	327	ANIA, major outer membrane protein PAN 1; ANIA[NO2	82.41
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	82.28

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=9.9e-41  Score=289.12  Aligned_cols=109  Identities=25%  Similarity=0.501  Sum_probs=100.8

Q ss_pred             cceEEEecCCCCCccCCC-CCcccccCCCeEecCceeeeeeecCCceEEEe-cccCCCCCCCCCCccccCCCCcEEEe-c
Q 016941           22 HALKFNVGGKHGWVTNPG-ENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLV-NKDDYDSCNTKKPLLKLDSGDSEFKL-D   98 (380)
Q Consensus        22 sA~tyvVGGs~GWt~~P~-~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveV-nK~dYdsCn~snpI~~fSsGndvVtL-d   98 (380)
                      +|++|+|||+.||++.+. .||++|+++++|+|||+|+|+|..++|+|+|| ++++|+.|+..+++..+++|+++|+| +
T Consensus         2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~   81 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD   81 (138)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred             CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence            578999999999998643 78999999999999999999999999999999 99999999999999999999999999 9


Q ss_pred             cccceEEEeCCCCcCCCCCeEEEEecCCCCCC
Q 016941           99 RSGPFYFISGNHDHCQKGQKLIVVVLHERPPP  130 (380)
Q Consensus        99 kpG~yYFICGV~gHCq~GMKLaInV~asss~p  130 (380)
                      ++|+|||||++.+||++||||+|+|......+
T Consensus        82 ~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~  113 (138)
T 1jer_A           82 ELGMHYFVCTVGTHCSNGQKLSINVVAANATV  113 (138)
T ss_dssp             SSEEEEEECCSTTTGGGTCEEEEEEECCC---
T ss_pred             CCcCEEEEcCCCCccccCCEEEEEEcCCCCCC
Confidence            99999999999999999999999999876543

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=100.00  E-value=8.4e-39  Score=266.57  Aligned_cols=107  Identities=36%  Similarity=0.693  Sum_probs=99.5

Q ss_pred             cceEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEecccc
Q 016941           22 HALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSG  101 (380)
Q Consensus        22 sA~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG  101 (380)
                      +|++|+|||+.||++.+..||++||++++|+|||+|+|+|..+.|+|+||++++|+.|+..+++..+++|+++|+|+++|
T Consensus         1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G   80 (109)
T 1ws8_A            1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG   80 (109)
T ss_dssp             CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred             CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCc
Confidence            46789999999999865689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeCCCCcCCCCCeEEEEecCCCC
Q 016941          102 PFYFISGNHDHCQKGQKLIVVVLHERP  128 (380)
Q Consensus       102 ~yYFICGV~gHCq~GMKLaInV~asss  128 (380)
                      ++||||++.+||++||||+|+|.+..+
T Consensus        81 ~~yFic~~~gHC~~GmKl~I~V~~~~s  107 (109)
T 1ws8_A           81 TFYFLCGIPGHCQLGQKVEIKVDPGSS  107 (109)
T ss_dssp             EEEEECCSTTTTTTTCEEEEEECC---
T ss_pred             CEEEECCCCCcccCCCEEEEEEcCCCC
Confidence            999999999999999999999987653

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A

Probab=100.00  E-value=2.1e-37  Score=260.83  Aligned_cols=106  Identities=31%  Similarity=0.624  Sum_probs=96.6

Q ss_pred             eEEEecCCCCCccC-CCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccc
Q 016941           24 LKFNVGGKHGWVTN-PGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGP  102 (380)
Q Consensus        24 ~tyvVGGs~GWt~~-P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~  102 (380)
                      ++|+|||+.||++. ...||++|+++++|+|||+|+|+|..++|+|+||++++|+.|+..+++..+++|+++|+|+++|+
T Consensus         2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~   81 (116)
T 1x9u_A            2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGP   81 (116)
T ss_dssp             CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEE
T ss_pred             eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCC
Confidence            47999999999975 35789999999999999999999999999999999999999999999988999999999999999


Q ss_pred             eEEEeCCCCcCCCCCeEEE-EecCCCCC
Q 016941          103 FYFISGNHDHCQKGQKLIV-VVLHERPP  129 (380)
Q Consensus       103 yYFICGV~gHCq~GMKLaI-nV~asss~  129 (380)
                      +||||++.+||++||||+| +|...+..
T Consensus        82 ~yFic~~~~HC~~Gmkl~In~V~~~~~~  109 (116)
T 1x9u_A           82 QYYICTVGDHCRVGQKLSINVVGAGGAG  109 (116)
T ss_dssp             EEEECCSTTTTTTTCEEEEEEECC----
T ss_pred             EEEECCCCCccccCCEEEEEEECCCCCC
Confidence            9999999999999999999 78766543

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=2.8e-36  Score=245.95  Aligned_cols=96  Identities=35%  Similarity=0.670  Sum_probs=91.9

Q ss_pred             eEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccce
Q 016941           24 LKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPF  103 (380)
Q Consensus        24 ~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~y  103 (380)
                      ++|+|||+.||++    +|++|+++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|+++|+| ++|++
T Consensus         1 ~~~~VG~~~GW~~----~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~   75 (96)
T 2cbp_A            1 AVYVVGGSGGWTF----NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQS   75 (96)
T ss_dssp             CEEETTGGGCSCS----SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEEE
T ss_pred             CEEEECCcCCCcc----ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCCE
Confidence            3699999999986    699999999999999999999999999999999999999999999889999999999 89999


Q ss_pred             EEEeCCCCcCCCCCeEEEEec
Q 016941          104 YFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       104 YFICGV~gHCq~GMKLaInV~  124 (380)
                      ||||++++||++||||+|+|+
T Consensus        76 yFic~~~~HC~~Gmkl~I~Vl   96 (96)
T 2cbp_A           76 YFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEECCSTTTGGGTCEEEEEEC
T ss_pred             EEEcCCCCccccCCEEEEEEC
Confidence            999999999999999999985

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1

Probab=99.97  E-value=2.9e-32  Score=220.66  Aligned_cols=91  Identities=33%  Similarity=0.581  Sum_probs=85.6

Q ss_pred             eEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccce
Q 016941           24 LKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPF  103 (380)
Q Consensus        24 ~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~y  103 (380)
                      ++|+|    ||+++     ++|+++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|+++|+|+ +|++
T Consensus         1 ~~y~V----gW~~~-----~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~   70 (91)
T 1f56_A            1 AVYNI----GWSFN-----VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQN   70 (91)
T ss_dssp             CEEEE----ECSSS-----CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEE
T ss_pred             CEEEE----eCCCC-----CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCCe
Confidence            36889    79873     89999999999999999999999999999999999999999998899999999996 8999


Q ss_pred             EEEeCCCCcCCCCCeEEEEec
Q 016941          104 YFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       104 YFICGV~gHCq~GMKLaInV~  124 (380)
                      ||||++++||++||||+|+|.
T Consensus        71 yFic~~~~HC~~Gmkl~I~v~   91 (91)
T 1f56_A           71 YFICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EEECCSTTTTTTTCEEEEEEC
T ss_pred             EEEcCCCCccccCCEEEEEEC
Confidence            999999999999999999984

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=99.33  E-value=2.8e-12  Score=106.76  Aligned_cols=96  Identities=19%  Similarity=0.256  Sum_probs=66.6

Q ss_pred             ccceEEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeec-----CCceEEEeccc-CCCC--------------C
Q 016941           21 SHALKFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK-----GSDSVLLVNKD-DYDS--------------C   79 (380)
Q Consensus        21 AsA~tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-----G~HSVveVnK~-dYds--------------C   79 (380)
                      +..+++.|+-. ++|.|.|        ...+++.||+|+|.|.+     ..|+++..+.. ++..              +
T Consensus        14 ~~~~~v~V~~~~~~~~F~P--------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (140)
T 1qhq_A           14 TPAQTVEVRAAPDALAFAQ--------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFV   85 (140)
T ss_dssp             CCSEEEEEEBCSSSSSBSC--------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTC
T ss_pred             CCCEEEEEEEeCCCceEeC--------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhccccccc
Confidence            34467888753 4698865        36799999999999977     46998876422 1111              0


Q ss_pred             ---CCCCCc---cccCCC---CcEEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           80 ---NTKKPL---LKLDSG---DSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        80 ---n~snpI---~~fSsG---ndvVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                         +..+.+   .....|   ..+|+++++|.|||+|++.+||+.|||..|+|.
T Consensus        86 ~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~  139 (140)
T 1qhq_A           86 PPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT  139 (140)
T ss_dssp             CCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             CccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence               000100   112333   346888999999999999999999999999985

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=99.25  E-value=1e-11  Score=94.88  Aligned_cols=86  Identities=16%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             eEEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeec-CCceEEEecccCCCCCCCCCCccccCCC-CcEEEeccc
Q 016941           24 LKFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK-GSDSVLLVNKDDYDSCNTKKPLLKLDSG-DSEFKLDRS  100 (380)
Q Consensus        24 ~tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-G~HSVveVnK~dYdsCn~snpI~~fSsG-ndvVtLdkp  100 (380)
                      .++.||++ .+|.|.|.        ..++++||+|+|.+.. ..|+|......++. .    ....+..| ...++++++
T Consensus         3 ~~v~~~~~~~~~~f~P~--------~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-~----~~~~~~~g~~~~~~f~~~   69 (91)
T 1bxv_A            3 VAIKMGADNGMLAFEPS--------TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-H----KDLAFSPGETFEATFSEP   69 (91)
T ss_dssp             EEEEESCTTSCSSEESS--------EEEECTTCEEEEEECSSCCEEEEETTCGGGC-E----EEEECSTTCEEEEECCSC
T ss_pred             EEEEEecCCCccEEeCC--------EEEECCCCEEEEEECCCCCcEEEEeCCCccC-c----ccceeCCCCEEEEEeCCC
Confidence            35677764 56888663        5789999999999875 57999875533221 0    11123444 357889999


Q ss_pred             cceEEEeCCCCcCCCCCeEEEEec
Q 016941          101 GPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       101 G~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      |.|+|+|.  .||..||+..|.|.
T Consensus        70 G~y~~~C~--~H~~~gM~g~i~V~   91 (91)
T 1bxv_A           70 GTYTYYCE--PHRGAGMVGKIVVQ   91 (91)
T ss_dssp             EEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEEEeC--CCccCCCEEEEEEC
Confidence            99999999  79999999999983

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=99.07  E-value=1.8e-10  Score=90.59  Aligned_cols=92  Identities=16%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             ceEEEecC-CCCCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecc---cCCCCCCCCCCccccCCCC-cEEE
Q 016941           23 ALKFNVGG-KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNK---DDYDSCNTKKPLLKLDSGD-SEFK   96 (380)
Q Consensus        23 A~tyvVGG-s~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK---~dYdsCn~snpI~~fSsGn-dvVt   96 (380)
                      +.++.+|+ +.++.|.|.        ..++++||+|+|.+... .|+|...+.   +.++.+...........|. .+++
T Consensus         1 ~~~V~m~~~~~~~~F~P~--------~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~t   72 (98)
T 1iuz_A            1 AQIVKLGGDDGSLAFVPS--------KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRK   72 (98)
T ss_dssp             CEEEEESCTTSCCSEESS--------EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEE
T ss_pred             CEEEEEecCCCCcEEeCC--------EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEE
Confidence            35667765 456888663        57899999999998764 799987532   1233322211111234454 4788


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++|.|+|+|..  ||+.||+..|.|.
T Consensus        73 f~~~G~y~y~C~~--H~~~gM~G~I~V~   98 (98)
T 1iuz_A           73 LSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             CCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             cCCCEEEEEEchh--hccCCCEEEEEEC
Confidence            9999999999996  9999999999983

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=99.04  E-value=1.9e-10  Score=99.46  Aligned_cols=76  Identities=13%  Similarity=0.220  Sum_probs=59.0

Q ss_pred             CCeEecCceeeeeeecC----CceEEEec-ccCCCCCCCCCCccc-------cCCCC---c--EEEeccccceEEEeCCC
Q 016941           48 RNRFLVNDTLFFKYKKG----SDSVLLVN-KDDYDSCNTKKPLLK-------LDSGD---S--EFKLDRSGPFYFISGNH  110 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG----~HSVveVn-K~dYdsCn~snpI~~-------fSsGn---d--vVtLdkpG~yYFICGV~  110 (380)
                      ..++++||+|+|+|.+.    .|+++.++ ...|+.|.....+..       ...|.   .  +|++ ++|+|||+|...
T Consensus        62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~  140 (154)
T 2cal_A           62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP  140 (154)
T ss_dssp             EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred             EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence            46899999999999764    49998885 457878876543321       12333   2  5678 999999999999


Q ss_pred             CcCCCCCeEEEEec
Q 016941          111 DHCQKGQKLIVVVL  124 (380)
Q Consensus       111 gHCq~GMKLaInV~  124 (380)
                      +||+.|||..|.|.
T Consensus       141 gH~~~GM~G~IiV~  154 (154)
T 2cal_A          141 GMAATGMFGKIVVK  154 (154)
T ss_dssp             TTGGGTCEEEEEEC
T ss_pred             CHHHCCCEEEEEEC
Confidence            99999999999883

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=99.02  E-value=1.7e-09  Score=90.10  Aligned_cols=95  Identities=14%  Similarity=0.236  Sum_probs=66.5

Q ss_pred             ccceEEEecC-CCCCccCCCCCcccccCCCeEecCceeeeeeecC----CceEEEeccc------------------CCC
Q 016941           21 SHALKFNVGG-KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG----SDSVLLVNKD------------------DYD   77 (380)
Q Consensus        21 AsA~tyvVGG-s~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG----~HSVveVnK~------------------dYd   77 (380)
                      +..+++.||. ..+|.|.|.        .++++.||+++|.|.+.    .|+++....+                  +|.
T Consensus        16 ~~~~~V~v~~~~~~~~F~p~--------~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~   87 (139)
T 2aan_A           16 SGPVTIEIGSKGEELAFDKT--------ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYL   87 (139)
T ss_dssp             -CCEEEEEEBCTTSSSBSCS--------EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTC
T ss_pred             CcCEEEEEEecCCccEEcCC--------eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccccc
Confidence            3445777852 346877653        57899999999998764    6998877532                  566


Q ss_pred             CCCCCCCc---cccCCCCc---EEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           78 SCNTKKPL---LKLDSGDS---EFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        78 sCn~snpI---~~fSsGnd---vVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      .|+..+.+   ..+..|..   +|+++++|.|+|+|.+.+||+ ||+..|.|.
T Consensus        88 p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~  139 (139)
T 2aan_A           88 PADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN  139 (139)
T ss_dssp             CSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred             CcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence            66533211   12344543   455568999999999999999 999999883

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=99.01  E-value=3.2e-10  Score=89.22  Aligned_cols=91  Identities=16%  Similarity=0.194  Sum_probs=61.7

Q ss_pred             eEEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeec-CCceEEEecccCCC-----CCCCCCCccccCCCC-cEE
Q 016941           24 LKFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK-GSDSVLLVNKDDYD-----SCNTKKPLLKLDSGD-SEF   95 (380)
Q Consensus        24 ~tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-G~HSVveVnK~dYd-----sCn~snpI~~fSsGn-dvV   95 (380)
                      .++.||.+ .+|.|.|.        ..++++||+|+|.+.. ..|+|...+....+     .+...........|. .+|
T Consensus         4 ~~V~~~~~~~~~~F~P~--------~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~~~   75 (106)
T 2gim_A            4 YTVKLGSDKGLLVFEPA--------KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTST   75 (106)
T ss_dssp             EEEEESCTTCCSSEESS--------EEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEE
T ss_pred             EEEEEEecCCcceEcCC--------EEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEEEE
Confidence            36778754 67888663        5789999999999765 46998764322110     000000011233443 478


Q ss_pred             Ee---ccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           96 KL---DRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        96 tL---dkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++   +++|.|+|+|.  .||+.||+..|+|.
T Consensus        76 ~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  105 (106)
T 2gim_A           76 TFPADAPAGEYTFYCE--PHRGAGMVGKITVA  105 (106)
T ss_dssp             ECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence            88   89999999999  89999999999985

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=98.98  E-value=1.4e-09  Score=85.04  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=62.2

Q ss_pred             EEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEeccc---CCCCCCCC--CCccccCCCC-cEEE
Q 016941           25 KFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNKD---DYDSCNTK--KPLLKLDSGD-SEFK   96 (380)
Q Consensus        25 tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK~---dYdsCn~s--npI~~fSsGn-dvVt   96 (380)
                      ++.||++ .++.|.|.        ..++++||+|+|++... .|+|...+..   +++.++..  ..-.....|. .+++
T Consensus         2 ~v~m~~~~~~~~F~P~--------~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~t   73 (99)
T 1plc_A            2 DVLLGADDGSLAFVPS--------EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVA   73 (99)
T ss_dssp             EEEESCTTCCSCEESS--------EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEE
T ss_pred             EEEEecCCCcceEeCC--------EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEEE
Confidence            5677754 55777653        57899999999988764 6999775431   12222110  0001233444 4789


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++|.|+|+|.  .||+.||+..|+|.
T Consensus        74 f~~~G~y~~~C~--~H~~~gM~G~i~V~   99 (99)
T 1plc_A           74 LSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             ECCCceEEEEcC--CCcccCCEEEEEEC
Confidence            999999999999  79999999999983

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=98.97  E-value=6e-10  Score=86.52  Aligned_cols=92  Identities=13%  Similarity=0.181  Sum_probs=63.4

Q ss_pred             ceEEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecc---cCCCCCCCCCCccccCCCC-cEEE
Q 016941           23 ALKFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNK---DDYDSCNTKKPLLKLDSGD-SEFK   96 (380)
Q Consensus        23 A~tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK---~dYdsCn~snpI~~fSsGn-dvVt   96 (380)
                      +.++.+|++ .++.|.|.        ..++++||+|+|.+... .|+|...+.   ++++.+...........|. .+++
T Consensus         1 ~~~V~m~~~~~~~~F~P~--------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~t   72 (98)
T 2plt_A            1 DATVKLGADSGALEFVPK--------TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVK   72 (98)
T ss_dssp             CEEEEESCTTCCSSEESS--------EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEE
T ss_pred             CEEEEEecCCCCceEeCC--------EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEE
Confidence            356778754 56887653        57899999999988764 699876532   1222221111111234454 4788


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++|.|+|+|.  .||+.||+..|.|.
T Consensus        73 f~~~G~y~y~C~--~H~~~gM~G~i~V~   98 (98)
T 2plt_A           73 LTAAGEYGYYCE--PHQGAGMVGKIIVQ   98 (98)
T ss_dssp             CCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred             eCCCeEEEEEcC--CccccCCeEEEEEC
Confidence            999999999999  79999999999983

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=98.96  E-value=1.6e-09  Score=84.96  Aligned_cols=90  Identities=14%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             EEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeec-CCceEEEecccCCC----CCCCCC----CccccCCCC-c
Q 016941           25 KFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK-GSDSVLLVNKDDYD----SCNTKK----PLLKLDSGD-S   93 (380)
Q Consensus        25 tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-G~HSVveVnK~dYd----sCn~sn----pI~~fSsGn-d   93 (380)
                      ++.||.+ .++.|.|.        ..++++||+|+|.+.. ..|+|+....+.++    .|+...    .......|. .
T Consensus         2 ~V~~g~~~~~~~F~P~--------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~   73 (102)
T 1kdj_A            2 KVEVGDEVGNFKFYPD--------SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSF   73 (102)
T ss_dssp             EEEESCTTCCCCEESS--------EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEE
T ss_pred             EEEEecCCCccEEeCC--------EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEE
Confidence            5678864 55777653        5789999999999765 36998875433332    111100    111234443 4


Q ss_pred             EEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           94 EFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        94 vVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +++++++|.|+|+|.  .||+.||+..|.|.
T Consensus        74 ~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~  102 (102)
T 1kdj_A           74 KAKVSTPGTYTFYCT--PHKSANMKGTLTVK  102 (102)
T ss_dssp             EECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred             EEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence            788899999999999  89999999999983

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=98.96  E-value=1.5e-09  Score=91.08  Aligned_cols=83  Identities=22%  Similarity=0.275  Sum_probs=60.6

Q ss_pred             cCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCC-ccccCCCC-cEEEeccccceEEE
Q 016941           29 GGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP-LLKLDSGD-SEFKLDRSGPFYFI  106 (380)
Q Consensus        29 GGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snp-I~~fSsGn-dvVtLdkpG~yYFI  106 (380)
                      |+++++.|.|.        ..++++||+|+|.+....|+|+...     .|...+. ......|. .+|+++++|.|+|+
T Consensus        11 g~~g~~~F~P~--------~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~   77 (123)
T 1pmy_A           11 GPGGMMVFDPA--------LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFK   77 (123)
T ss_dssp             ETTEEEEEESS--------EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEE
T ss_pred             cCCCCceEeCC--------EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEE
Confidence            55556877663        5789999999999988789998642     2222211 11112333 47999999999999


Q ss_pred             eCCCCcCCCCCeEEEEecCC
Q 016941          107 SGNHDHCQKGQKLIVVVLHE  126 (380)
Q Consensus       107 CGV~gHCq~GMKLaInV~as  126 (380)
                      |.  .||..||+..|+|...
T Consensus        78 C~--~H~~~gM~G~I~V~~~   95 (123)
T 1pmy_A           78 CA--PHYMMGMVALVVVGDK   95 (123)
T ss_dssp             CS--TTTTTTCEEEEEESSC
T ss_pred             eC--CccccCCEEEEEEcCC
Confidence            98  4999999999999854

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=98.93  E-value=1.8e-09  Score=90.49  Aligned_cols=83  Identities=14%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             cCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCC-ccccCCCC-cEEEeccccceEEE
Q 016941           29 GGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP-LLKLDSGD-SEFKLDRSGPFYFI  106 (380)
Q Consensus        29 GGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snp-I~~fSsGn-dvVtLdkpG~yYFI  106 (380)
                      |+++++.|.|.        ..++++||+|+|.+....|+|+..     +.|...+. ......|. .+|+++++|.|+|+
T Consensus        11 g~~g~~~F~P~--------~i~V~~GdtV~f~~~~~~H~v~~~-----~~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~   77 (123)
T 1paz_A           11 GAEGAMVFEPA--------YIKANPGDTVTFIPVDKGHNVESI-----KDMIPEGAEKFKSKINENYVLTVTQPGAYLVK   77 (123)
T ss_dssp             ETTEEEEEESS--------EEEECTTCEEEEEESSSSCCCEEC-----TTCSCTTCCCCBCCTTCCEEEECCSCEEEEEE
T ss_pred             cCCCCceEeCC--------EEEECCCCEEEEEECCCCeEEEEe-----cccCCCCccceecCCCCEEEEEeCCCEEEEEE
Confidence            55555777663        579999999999998878999763     12222111 01112333 47899999999999


Q ss_pred             eCCCCcCCCCCeEEEEecCC
Q 016941          107 SGNHDHCQKGQKLIVVVLHE  126 (380)
Q Consensus       107 CGV~gHCq~GMKLaInV~as  126 (380)
                      |.  .||..||+..|+|...
T Consensus        78 C~--~H~~~gM~G~I~V~~~   95 (123)
T 1paz_A           78 CT--PHYAMGMIALIAVGDS   95 (123)
T ss_dssp             CT--TTGGGTCEEEEEESSS
T ss_pred             eC--CcccCCCEEEEEEcCC
Confidence            98  4999999999999863

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=98.89  E-value=4.6e-09  Score=81.85  Aligned_cols=90  Identities=20%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             EEEecC-CCCCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecc---cCCCCCCCC--CCccccCCCC-cEEE
Q 016941           25 KFNVGG-KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNK---DDYDSCNTK--KPLLKLDSGD-SEFK   96 (380)
Q Consensus        25 tyvVGG-s~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK---~dYdsCn~s--npI~~fSsGn-dvVt   96 (380)
                      ++.||+ +.++.|.|.        ..++++||+|+|++... .|+|.....   +.++.+...  ..-.....|. .+++
T Consensus         2 ~V~~~~~~~~~~F~P~--------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~   73 (99)
T 1byp_A            2 EVLLGSSDGGLAFVPS--------DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVT   73 (99)
T ss_dssp             EEEESCTTSCCSEESS--------EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEE
T ss_pred             EEEEecCCCcceEeCC--------EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEE
Confidence            567775 456877653        56899999999988764 699876532   122222110  0001234444 4788


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++|.|+|+|.  .||+.||+..|+|.
T Consensus        74 f~~~G~y~~~C~--~H~~~gM~G~i~V~   99 (99)
T 1byp_A           74 LTEKGTYKFYCA--PHAGAGMVGKVTVN   99 (99)
T ss_dssp             ECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             eCCCcEEEEEcC--CccccCCEEEEEEC
Confidence            999999999999  79999999999983

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=98.88  E-value=4.1e-09  Score=81.89  Aligned_cols=89  Identities=18%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             eEEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecccC---CCCCCCCCCccccCCC-CcEEEe
Q 016941           24 LKFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNKDD---YDSCNTKKPLLKLDSG-DSEFKL   97 (380)
Q Consensus        24 ~tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK~d---YdsCn~snpI~~fSsG-ndvVtL   97 (380)
                      .++.||++ .++.|.|.        ..++++||+|+|.+... .|+|.......   ++.|....  .....| ..++++
T Consensus         3 ~~V~~~~~~~~~~F~P~--------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~tf   72 (97)
T 1b3i_A            3 VQIKMGTDKYAPLYEPK--------ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGSFYSVTL   72 (97)
T ss_dssp             EEEEEEETTTEEEEESS--------EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSCCEEEEC
T ss_pred             EEEEEeccCCccEEeCC--------EEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc--eecCCCCEEEEEe
Confidence            35667753 56777653        57899999999998653 69987753221   11111111  122334 357889


Q ss_pred             ccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           98 DRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        98 dkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +++|.|+|+|.  .||+.||+..|.|.
T Consensus        73 ~~~G~y~y~C~--~H~~~gM~G~i~V~   97 (97)
T 1b3i_A           73 GTPGTYSFYCT--PHRGAGMVGTITVE   97 (97)
T ss_dssp             CSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred             CCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence            99999999999  89999999999983

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=98.81  E-value=3.7e-09  Score=82.28  Aligned_cols=91  Identities=13%  Similarity=0.180  Sum_probs=61.0

Q ss_pred             eEEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeec-CCceEEEecccC--CCCCCCCCCccccCCCC-cEEEec
Q 016941           24 LKFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK-GSDSVLLVNKDD--YDSCNTKKPLLKLDSGD-SEFKLD   98 (380)
Q Consensus        24 ~tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-G~HSVveVnK~d--YdsCn~snpI~~fSsGn-dvVtLd   98 (380)
                      .++.+|.+ .++.|.|.        ..++++||+|+|.+.. ..|+|...+...  .+.++..........|. .+++++
T Consensus         3 ~~V~~~~~~~~~~F~P~--------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~   74 (98)
T 1pcs_A            3 ATVKMGSDSGALVFEPS--------TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFT   74 (98)
T ss_dssp             EEEEESCTTSCSSEESS--------EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECC
T ss_pred             EEEEEecCCCccEEeCC--------EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcC
Confidence            45677754 56887653        5789999999999765 369987643210  00011100011223443 478889


Q ss_pred             cccceEEEeCCCCcCCCCCeEEEEec
Q 016941           99 RSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        99 kpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++|.|+|+|.  .||+.||+..|.|.
T Consensus        75 ~~G~y~~~C~--~H~~~gM~G~i~V~   98 (98)
T 1pcs_A           75 EPGTYTYYCE--PHRGAGMVGKVVVE   98 (98)
T ss_dssp             SCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             CCeEEEEEcC--CccccCCeEEEEEC
Confidence            9999999999  79999999999983

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=98.79  E-value=7.4e-09  Score=87.20  Aligned_cols=80  Identities=16%  Similarity=0.087  Sum_probs=58.7

Q ss_pred             CCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCc-cccCCC-CcEEEeccccceEEEeC
Q 016941           31 KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPL-LKLDSG-DSEFKLDRSGPFYFISG  108 (380)
Q Consensus        31 s~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI-~~fSsG-ndvVtLdkpG~yYFICG  108 (380)
                      +..+.|.|.        ..++++||+|+|.+.+..|+|...+.     |...+.. .....| ..+++++++|.|+|+|.
T Consensus        13 ~G~~~F~P~--------~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~   79 (123)
T 3erx_A           13 SGAMVFEPA--------FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT   79 (123)
T ss_dssp             TEEEEEESS--------EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG
T ss_pred             CCcEeEeCC--------EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC
Confidence            334777663        67999999999999887899976321     2222210 111223 35899999999999999


Q ss_pred             CCCcCCCCCeEEEEecC
Q 016941          109 NHDHCQKGQKLIVVVLH  125 (380)
Q Consensus       109 V~gHCq~GMKLaInV~a  125 (380)
                        .||..||+-.|+|..
T Consensus        80 --~H~~~GM~G~I~V~~   94 (123)
T 3erx_A           80 --PHFGMGMVGLVQVGD   94 (123)
T ss_dssp             --GGTTTTCEEEEEESS
T ss_pred             --CCCcCCcEEEEEECC
Confidence              699999999999985

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=98.79  E-value=1.3e-08  Score=86.26  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=60.9

Q ss_pred             cCCCC--CccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCc-cccCCCC-cEEEeccccceE
Q 016941           29 GGKHG--WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPL-LKLDSGD-SEFKLDRSGPFY  104 (380)
Q Consensus        29 GGs~G--Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI-~~fSsGn-dvVtLdkpG~yY  104 (380)
                      +|++|  +.|.|.        ..++++||+|+|.+....|+|...+.     |...+.. .....|. .+++++++|.|+
T Consensus        10 ~g~~G~~~~F~P~--------~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~   76 (124)
T 3ef4_A           10 KDDAGNTMVFQPG--------FVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYV   76 (124)
T ss_dssp             ECTTSCEEEEESS--------EEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEE
T ss_pred             cCCCCceeEEeCC--------EEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEE
Confidence            44444  888763        67999999999999888899987421     2222211 1122333 589999999999


Q ss_pred             EEeCCCCcCCCCCeEEEEecC
Q 016941          105 FISGNHDHCQKGQKLIVVVLH  125 (380)
Q Consensus       105 FICGV~gHCq~GMKLaInV~a  125 (380)
                      |+|.  .||..||+-.|+|..
T Consensus        77 Y~C~--~H~~~GM~G~I~V~~   95 (124)
T 3ef4_A           77 LKCA--PHYGMGMVVLVQVGK   95 (124)
T ss_dssp             EECT--TTGGGTCEEEEEESS
T ss_pred             EEcC--CCCcCCCEEEEEECC
Confidence            9998  599999999999986

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=98.79  E-value=1.1e-08  Score=86.61  Aligned_cols=85  Identities=16%  Similarity=0.134  Sum_probs=61.5

Q ss_pred             ecCCC-CCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCc-cccCCC-CcEEEeccccceE
Q 016941           28 VGGKH-GWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPL-LKLDSG-DSEFKLDRSGPFY  104 (380)
Q Consensus        28 VGGs~-GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI-~~fSsG-ndvVtLdkpG~yY  104 (380)
                      +|.+. ++.|.|.        ..++++||+|+|.+.+..|+|...+.     |...... .....| ..+|+++++|.|+
T Consensus        11 ~g~~g~~~~F~P~--------~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~   77 (127)
T 3tu6_A           11 KAADGRVMAFEPA--------VIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYM   77 (127)
T ss_dssp             ECTTSCEEEEESS--------EEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEE
T ss_pred             cCCCCcccEEeCC--------EEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEE
Confidence            36554 4777663        67999999999999887899976432     1111110 111223 3589999999999


Q ss_pred             EEeCCCCcCCCCCeEEEEecCCC
Q 016941          105 FISGNHDHCQKGQKLIVVVLHER  127 (380)
Q Consensus       105 FICGV~gHCq~GMKLaInV~ass  127 (380)
                      |+|.  .||..||+..|.|....
T Consensus        78 y~C~--~H~~~GM~G~I~V~~~~   98 (127)
T 3tu6_A           78 YQCA--PHVGMGMIGAIVVGEPA   98 (127)
T ss_dssp             EECT--TTGGGTCEEEEEESSCT
T ss_pred             EEeC--CCCcCCcEEEEEECcCC
Confidence            9999  59999999999998643

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.57  E-value=9.7e-08  Score=80.15  Aligned_cols=77  Identities=8%  Similarity=0.020  Sum_probs=51.7

Q ss_pred             CCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecccCCCCCCCCCCccccCCCC-cEEEeccccceEEEeCCC
Q 016941           33 GWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNKDDYDSCNTKKPLLKLDSGD-SEFKLDRSGPFYFISGNH  110 (380)
Q Consensus        33 GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK~dYdsCn~snpI~~fSsGn-dvVtLdkpG~yYFICGV~  110 (380)
                      +|.|.|        ...++++||+|+|.+... .|+|...+..+- .-.+..  ..+..|. .+++++++|.|+|+|.. 
T Consensus        54 ~~~F~P--------~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g-~~~~~s--~~l~pG~t~~~tF~~~G~y~y~C~~-  121 (132)
T 3c75_A           54 KMKYLT--------PEVTIKAGETVYWVNGEVMPHNVAFKKGIVG-EDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP-  121 (132)
T ss_dssp             TTEESS--------SEEEECTTCEEEEEECSSSCBCCEECTTTSS-SSCEEC--CCBCTTEEEEEEECSCEEEEEECSS-
T ss_pred             eeEEeC--------CEEEECCCCEEEEEECCCCceEEEEeCCCCC-cccccc--cccCCCCEEEEEcCCCEEEEEEeCC-
Confidence            466655        357899999999997654 599876432210 000111  1223443 47888999999999998 


Q ss_pred             CcCCCCCeEEEEec
Q 016941          111 DHCQKGQKLIVVVL  124 (380)
Q Consensus       111 gHCq~GMKLaInV~  124 (380)
                       |.  ||+..|.|.
T Consensus       122 -H~--gM~G~I~V~  132 (132)
T 3c75_A          122 -HP--FMRGKVIVE  132 (132)
T ss_dssp             -CT--TCEEEEEEC
T ss_pred             -Cc--CCEEEEEEC
Confidence             76  999999883

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=98.37  E-value=9e-07  Score=68.97  Aligned_cols=89  Identities=16%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             eEEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeec-CCceEEEecccCCCCCCC-------CCCccccCCCC-c
Q 016941           24 LKFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK-GSDSVLLVNKDDYDSCNT-------KKPLLKLDSGD-S   93 (380)
Q Consensus        24 ~tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-G~HSVveVnK~dYdsCn~-------snpI~~fSsGn-d   93 (380)
                      .++.||.+ .++.|.+.        ..+++.||+|+|.+.. ..|+|..-...  ..|..       .........|. .
T Consensus         3 ~~V~~~~~~~~~~f~p~--------~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~~~   72 (105)
T 3cvb_A            3 FTVKMGADSGLFQFEPA--------NVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGESY   72 (105)
T ss_dssp             EEEEESCTTCCSCEESS--------EEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTCEE
T ss_pred             EEEEEeecCCccEEeCC--------EEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCCeE
Confidence            45678754 56777543        5689999999998754 36888763211  11210       00001123343 3


Q ss_pred             EEEe---ccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           94 EFKL---DRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        94 vVtL---dkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++   +++|+|+|.|.  .||..||+-.|.|.
T Consensus        73 ~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  104 (105)
T 3cvb_A           73 EITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE  104 (105)
T ss_dssp             EEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence            6677   78999999999  79999999999985

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=98.31  E-value=1.9e-06  Score=76.61  Aligned_cols=92  Identities=13%  Similarity=0.181  Sum_probs=60.8

Q ss_pred             eEEEecCCCCCccCCCCCcccccCCCeE-ecCceeeeeeecC--------CceEEEecccC---------------CCCC
Q 016941           24 LKFNVGGKHGWVTNPGENYNKWSGRNRF-LVNDTLFFKYKKG--------SDSVLLVNKDD---------------YDSC   79 (380)
Q Consensus        24 ~tyvVGGs~GWt~~P~~nYt~WAS~kTF-~VGDTLVFkY~aG--------~HSVveVnK~d---------------YdsC   79 (380)
                      +++.|+.++++.|.+.        .+++ +.||+|.|.|.+.        .|+++..+..+               |..=
T Consensus        43 ~~V~I~~~d~m~F~P~--------~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~  114 (167)
T 3ay2_A           43 CAATVESNDNMQFNTK--------DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKP  114 (167)
T ss_dssp             CEEEEEECTTSCBSCS--------EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCT
T ss_pred             eEEEEEeCCCceEecc--------eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccc
Confidence            4677876668888653        4677 7899877777543        29987765432               2211


Q ss_pred             CCCCCc---cccCCCCc-EEEec----cccceEEEeCCCCcCCCCCeEEEEec
Q 016941           80 NTKKPL---LKLDSGDS-EFKLD----RSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        80 n~snpI---~~fSsGnd-vVtLd----kpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +..+.+   .....|.+ .|+++    ++|.|+|+|...+|-+ |||-.|+|.
T Consensus       115 ~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~  166 (167)
T 3ay2_A          115 DDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV  166 (167)
T ss_dssp             TCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred             cccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence            111111   12344543 55554    7899999999999988 999999985

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=98.26  E-value=5.8e-07  Score=70.91  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             CCeEecCceeeeeeecCC---ceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCCCCeEEE
Q 016941           48 RNRFLVNDTLFFKYKKGS---DSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQKGQKLIV  121 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~---HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~GMKLaI  121 (380)
                      ..++++||++.|.+.+..   |++..-   ++..   .   .....|.   ..|+.+++|.|.|+|.  .||..||+-.|
T Consensus        29 ~i~v~~G~tV~~~~~n~d~~~H~~~~~---~~~~---~---~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i   97 (100)
T 4hci_A           29 VITIPINESTTLLLKNKGKSEHTFTIK---KLGI---D---VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKV   97 (100)
T ss_dssp             EEEECTTSCEEEEEEECSSSCEEEEEG---GGTE---E---EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEE
T ss_pred             EEEECCCCEEEEEEEcCCCceEEEEEe---cCCc---c---eeecCCcceeEEEecccCceEEEECc--cccCCCCEEEE
Confidence            579999999999986532   666541   1110   0   1122333   3567789999999997  59999999999


Q ss_pred             Eec
Q 016941          122 VVL  124 (380)
Q Consensus       122 nV~  124 (380)
                      .|.
T Consensus        98 ~Ve  100 (100)
T 4hci_A           98 IVK  100 (100)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            884

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=98.22  E-value=2e-06  Score=71.78  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=59.0

Q ss_pred             EEEe---cCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCc-cccCCC-CcEEEecc
Q 016941           25 KFNV---GGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPL-LKLDSG-DSEFKLDR   99 (380)
Q Consensus        25 tyvV---GGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI-~~fSsG-ndvVtLdk   99 (380)
                      ++.+   |+++++.|.|.        ..++++||+|+|.+....|+|+...     .|...+.. .....| ...+++++
T Consensus         4 ~V~ml~~g~~g~~~F~P~--------~i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p~~~~~~~~~~g~t~~~tF~~   70 (122)
T 2ux6_A            4 EVHMLNKGKDGAMVFEPA--------SLKVAPGDTVTFIPTDKGHNVETIK-----GMIPDGAEAFKSKINENYKVTFTA   70 (122)
T ss_dssp             EEEEEEEETTEEEEEESS--------EEEECTTEEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEEECS
T ss_pred             EEEEEecCCCCCceEeCC--------EEEECCCCEEEEEECCCCcEEEEcc-----cccCCCcceeecCCCCEEEEEeCC
Confidence            4455   55545777653        5789999999999987789997643     12111110 111223 35789999


Q ss_pred             ccceEEEeCCCCcCCCCCeEEEEecCC
Q 016941          100 SGPFYFISGNHDHCQKGQKLIVVVLHE  126 (380)
Q Consensus       100 pG~yYFICGV~gHCq~GMKLaInV~as  126 (380)
                      +|.|+|+|..  |+.  |+..|.|...
T Consensus        71 ~G~y~y~C~~--H~~--M~G~I~V~~~   93 (122)
T 2ux6_A           71 PGVYGVKCTP--HPF--MVGVVQVGDA   93 (122)
T ss_dssp             CEEEEEEETT--EEE--EEEEEEESSS
T ss_pred             CEEEEEEeCC--Ccc--CEEEEEEeCC
Confidence            9999999998  888  9999999753

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=98.19  E-value=1e-05  Score=68.61  Aligned_cols=91  Identities=8%  Similarity=0.166  Sum_probs=60.1

Q ss_pred             EEEecCCCCCccCCCCCcccccCCCeEecC-ceeeeeeecC--------CceEEEeccc----------------CCCCC
Q 016941           25 KFNVGGKHGWVTNPGENYNKWSGRNRFLVN-DTLFFKYKKG--------SDSVLLVNKD----------------DYDSC   79 (380)
Q Consensus        25 tyvVGGs~GWt~~P~~nYt~WAS~kTF~VG-DTLVFkY~aG--------~HSVveVnK~----------------dYdsC   79 (380)
                      ++.|+.++.+.|.+.        ..+++.| |.+.|.|.+.        .|+++..+..                +|..=
T Consensus         4 ~v~i~~~d~m~F~p~--------~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~   75 (129)
T 1cuo_A            4 ETTVTSGDTMTYSTR--------SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTP   75 (129)
T ss_dssp             EEEEEECSSSCCSCS--------EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCT
T ss_pred             EEEEEeCCCceEccC--------eEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccc
Confidence            566766667888653        5689999 9877777553        3998776543                23211


Q ss_pred             CCCCCc---cccCCCCc---EEEec---cccceEEEeCCCCcCCCCCeEEEEec
Q 016941           80 NTKKPL---LKLDSGDS---EFKLD---RSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        80 n~snpI---~~fSsGnd---vVtLd---kpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +..+.+   .....|.+   +|+++   ++|.|+|+|..++|=+ |||-.|.|.
T Consensus        76 ~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~  128 (129)
T 1cuo_A           76 GDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE  128 (129)
T ss_dssp             TCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred             ccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence            111111   12344543   45544   8999999999999999 899999985

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=98.13  E-value=3.2e-06  Score=67.51  Aligned_cols=82  Identities=13%  Similarity=0.047  Sum_probs=55.1

Q ss_pred             ceEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecccC----CCCCCCCCCccccCCCC-cEEE
Q 016941           23 ALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNKDD----YDSCNTKKPLLKLDSGD-SEFK   96 (380)
Q Consensus        23 A~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK~d----YdsCn~snpI~~fSsGn-dvVt   96 (380)
                      +.+|.|.- ++|.|.|.        ..++++||+|+|.+... .|+|...+..+    |+.+       .+..|. ..++
T Consensus        18 a~~~~V~~-~~~~F~P~--------~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~t   81 (105)
T 2ov0_A           18 DGAIVVDI-AKMKYETP--------ELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLT   81 (105)
T ss_dssp             TTCEEEEE-ETTEESSS--------EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEE
T ss_pred             CcCEEEEE-eecEEcCC--------EEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEE
Confidence            34444432 35777653        57899999999987654 69987643211    2211       123343 4788


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++|.|+|+|..  |.  ||+..|.|.
T Consensus        82 f~~~G~y~y~C~~--H~--gM~G~i~V~  105 (105)
T 2ov0_A           82 FTEAGTYDYHCTP--HP--FMRGKVVVE  105 (105)
T ss_dssp             ECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred             eCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence            8999999999998  54  999999883

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=98.06  E-value=5.2e-06  Score=66.69  Aligned_cols=77  Identities=8%  Similarity=0.037  Sum_probs=51.6

Q ss_pred             CCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecccCCCCCCCCCCccccCCCC-cEEEeccccceEEEeCCC
Q 016941           33 GWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNKDDYDSCNTKKPLLKLDSGD-SEFKLDRSGPFYFISGNH  110 (380)
Q Consensus        33 GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK~dYdsCn~snpI~~fSsGn-dvVtLdkpG~yYFICGV~  110 (380)
                      +|.|.|.        ..++++||+|.|.+... .|+|...+... ..-.+..  ..+..|. ..++++++|.|.|+|.. 
T Consensus        28 ~~~F~P~--------~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~~s--~~l~~g~~~~~tf~~~G~y~~~C~~-   95 (106)
T 1id2_A           28 KMKYLTP--------EVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP-   95 (106)
T ss_dssp             TTEESSS--------EEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEEC--CCBCTTEEEEEEECSCEEEEEECSS-
T ss_pred             ecEEeCC--------EEEECCCCEEEEEECCCCcEEEEEeCCCC-Ccccccc--cccCCCCEEEEEeCCCEEEEEEeCC-
Confidence            3666653        57899999999997654 59987643210 0000011  1223343 47888999999999998 


Q ss_pred             CcCCCCCeEEEEec
Q 016941          111 DHCQKGQKLIVVVL  124 (380)
Q Consensus       111 gHCq~GMKLaInV~  124 (380)
                       |+  ||+..|.|.
T Consensus        96 -H~--~M~G~I~V~  106 (106)
T 1id2_A           96 -HP--FMRGKVIVE  106 (106)
T ss_dssp             -CT--TCEEEEEEC
T ss_pred             -CC--CCEEEEEEC
Confidence             77  999999883

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=97.99  E-value=3.1e-05  Score=65.62  Aligned_cols=91  Identities=13%  Similarity=0.219  Sum_probs=57.8

Q ss_pred             EEEecCCCCCccCCCCCcccccCCCeE-ecCceeeeeeecC--------CceEEEeccc----------------CCCCC
Q 016941           25 KFNVGGKHGWVTNPGENYNKWSGRNRF-LVNDTLFFKYKKG--------SDSVLLVNKD----------------DYDSC   79 (380)
Q Consensus        25 tyvVGGs~GWt~~P~~nYt~WAS~kTF-~VGDTLVFkY~aG--------~HSVveVnK~----------------dYdsC   79 (380)
                      ++.|+.++++.|.|.        ..++ +.||++.|.|.+.        .|+++..+.+                +|..=
T Consensus         3 ~v~v~~~d~m~F~p~--------~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~   74 (128)
T 2iaa_C            3 DVSIEGNDSMQFNTK--------SIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKA   74 (128)
T ss_dssp             EEEEEECTTSCBSCS--------EEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCT
T ss_pred             EEEEEeCCCceEecC--------EEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccccc
Confidence            456666667888653        3455 6699877777553        3998775433                23211


Q ss_pred             CCCCCc---cccCCCCc-EEE--ec--ccc-ceEEEeCCCCcCCCCCeEEEEec
Q 016941           80 NTKKPL---LKLDSGDS-EFK--LD--RSG-PFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        80 n~snpI---~~fSsGnd-vVt--Ld--kpG-~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +..+.+   .....|.+ .|+  +.  ++| .|.|+|..++|=+ |||-.|+|.
T Consensus        75 ~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  127 (128)
T 2iaa_C           75 GDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG  127 (128)
T ss_dssp             TCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred             ccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence            111111   12345543 444  44  678 5999999999999 999999985

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=97.97  E-value=2.4e-05  Score=66.34  Aligned_cols=91  Identities=13%  Similarity=0.176  Sum_probs=58.2

Q ss_pred             EEEecCCCCCccCCCCCcccccCCCeE-ecCceeeeeeecC--------CceEEEecccC----------------CCCC
Q 016941           25 KFNVGGKHGWVTNPGENYNKWSGRNRF-LVNDTLFFKYKKG--------SDSVLLVNKDD----------------YDSC   79 (380)
Q Consensus        25 tyvVGGs~GWt~~P~~nYt~WAS~kTF-~VGDTLVFkY~aG--------~HSVveVnK~d----------------YdsC   79 (380)
                      ++.|+.++++.|.|.        ..++ +.||++.|.|.+.        .|+++..+.++                |..=
T Consensus         4 ~v~v~~~d~m~F~p~--------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~   75 (128)
T 1nwp_A            4 KVTVDSTDQMSFNTK--------DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKD   75 (128)
T ss_dssp             EEEEEECTTSCBSCS--------EEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCT
T ss_pred             EEEEEeCCCccEecC--------EEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccccc
Confidence            566776667888763        4577 7899887777553        29987754332                2111


Q ss_pred             CCCCCc---cccCCCCc-EEE--ec--cccc-eEEEeCCCCcCCCCCeEEEEec
Q 016941           80 NTKKPL---LKLDSGDS-EFK--LD--RSGP-FYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        80 n~snpI---~~fSsGnd-vVt--Ld--kpG~-yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +..+.+   .....|.+ .|+  +.  ++|. |+|+|..++|=+ |||-.|+|.
T Consensus        76 ~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  128 (128)
T 1nwp_A           76 GDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK  128 (128)
T ss_dssp             TCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred             ccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence            111111   12345543 444  44  5676 999999999999 999999883

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=97.97  E-value=2.9e-05  Score=65.75  Aligned_cols=91  Identities=13%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             EEEecCCCCCccCCCCCcccccCCCeE-ecCceeeeeeecC--------CceEEEeccc----------------CCCCC
Q 016941           25 KFNVGGKHGWVTNPGENYNKWSGRNRF-LVNDTLFFKYKKG--------SDSVLLVNKD----------------DYDSC   79 (380)
Q Consensus        25 tyvVGGs~GWt~~P~~nYt~WAS~kTF-~VGDTLVFkY~aG--------~HSVveVnK~----------------dYdsC   79 (380)
                      ++.|+.++++.|.+.        ..++ +.||++.|.|.+.        .|+++..+..                +|..=
T Consensus         4 ~v~v~~~d~m~F~p~--------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~   75 (129)
T 2ccw_A            4 EATVESNDAMQYNVK--------EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKA   75 (129)
T ss_dssp             EEEEEECTTSCBSCS--------EEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCT
T ss_pred             EEEEEeCCCccEecc--------eEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccccc
Confidence            566776667888652        3455 6699877777553        2998876543                23221


Q ss_pred             CCCCCc---cccCCCCc-E--EEec--cccc-eEEEeCCCCcCCCCCeEEEEec
Q 016941           80 NTKKPL---LKLDSGDS-E--FKLD--RSGP-FYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        80 n~snpI---~~fSsGnd-v--VtLd--kpG~-yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +..+.+   .....|.+ .  |++.  ++|. |+|+|..++|=+ |||-.|+|.
T Consensus        76 ~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~  128 (129)
T 2ccw_A           76 GDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG  128 (129)
T ss_dssp             TCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred             ccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence            111111   12344543 4  4454  5665 999999999988 999999985

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5

Probab=97.56  E-value=2.2e-05  Score=71.07  Aligned_cols=80  Identities=28%  Similarity=0.421  Sum_probs=52.7

Q ss_pred             eEecCceeeeeeecC---------CceEEEecccCCCCCCCCC-C--ccccCC--CCcEEEec-------------ccc-
Q 016941           50 RFLVNDTLFFKYKKG---------SDSVLLVNKDDYDSCNTKK-P--LLKLDS--GDSEFKLD-------------RSG-  101 (380)
Q Consensus        50 TF~VGDTLVFkY~aG---------~HSVveVnK~dYdsCn~sn-p--I~~fSs--GndvVtLd-------------kpG-  101 (380)
                      .+++||.|.|-....         .+.|++|++++|+.|+... .  +...+.  +...|++.             ++| 
T Consensus        25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~  104 (178)
T 1iko_P           25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK  104 (178)
T ss_dssp             CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred             EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence            356799998875332         2678999999999998863 2  222232  22233321             255 


Q ss_pred             ceEEEeCCC-----------CcCCC-CCeEEEEecCCCCC
Q 016941          102 PFYFISGNH-----------DHCQK-GQKLIVVVLHERPP  129 (380)
Q Consensus       102 ~yYFICGV~-----------gHCq~-GMKLaInV~asss~  129 (380)
                      .|||||.-.           ++|.. +|||.|.|......
T Consensus       105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~  144 (178)
T 1iko_P          105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS  144 (178)
T ss_dssp             EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred             ceEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence            999999764           68965 99999999765543

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=97.29  E-value=0.00029  Score=56.16  Aligned_cols=66  Identities=14%  Similarity=0.174  Sum_probs=44.6

Q ss_pred             CCeEecCceeeeeeecC---CceEEEecccCCCCCCCCCCccccCCCCc---EEEeccccceEEEeCCCCcCCC-CCeEE
Q 016941           48 RNRFLVNDTLFFKYKKG---SDSVLLVNKDDYDSCNTKKPLLKLDSGDS---EFKLDRSGPFYFISGNHDHCQK-GQKLI  120 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG---~HSVveVnK~dYdsCn~snpI~~fSsGnd---vVtLdkpG~yYFICGV~gHCq~-GMKLa  120 (380)
                      ..+++.||.++|.+.+.   .|++...+   +.   .   ......|..   .|+.+++|.|+|.|..  ||.. +|+..
T Consensus        39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~---~~---~---~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~  107 (112)
T 1iby_A           39 TLVVKKGDAVKVVVENKSPISEGFSIDA---FG---V---QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT  107 (112)
T ss_dssp             EEEEETTCEEEEEEEECSSSCEEEEEGG---GT---E---EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEEcC---CC---c---eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence            56899999999988653   47765422   11   1   112234432   4555999999999998  7853 49999


Q ss_pred             EEec
Q 016941          121 VVVL  124 (380)
Q Consensus       121 InV~  124 (380)
                      |.|.
T Consensus       108 i~V~  111 (112)
T 1iby_A          108 LNVV  111 (112)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9885

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=97.16  E-value=0.00095  Score=56.76  Aligned_cols=81  Identities=14%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             eEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecC--CceEEEecccCCCCCCCCCCccccCCCC---cEEEec
Q 016941           24 LKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG--SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLD   98 (380)
Q Consensus        24 ~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG--~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLd   98 (380)
                      .++.|.+. .|.|.|        +..++.+||.++|...+.  .|++..-   ++.   ..   .....|.   ..|+++
T Consensus        46 ~~V~v~~~-~~~f~P--------~~l~Vp~G~~V~~~vts~DV~Hsf~ip---~~~---~k---~d~~PG~~~~~~~~~~  107 (135)
T 2cua_A           46 YTVYVLAF-AFGYQP--------NPIEVPQGAEIVFKITSPDVIHGFHVE---GTN---IN---VEVLPGEVSTVRYTFK  107 (135)
T ss_dssp             EEEEEEEE-TTEEES--------SSEEEETTSEEEEEEEBSSSCEEEEET---TSS---CE---EEECBTBCEEEEEECC
T ss_pred             EEEEEEEE-eCEEEC--------CEEEEcCCCEEEEEEEeCCccceEEec---CCC---ce---eEeCCCCcEEEEEEcC
Confidence            34555432 365544        367899999999999763  3665431   111   00   1122342   478999


Q ss_pred             cccceEEEeCCCCcCC---CCCeEEEEec
Q 016941           99 RSGPFYFISGNHDHCQ---KGQKLIVVVL  124 (380)
Q Consensus        99 kpG~yYFICGV~gHCq---~GMKLaInV~  124 (380)
                      ++|.|+|+|..  +|.   .+|++.|.|.
T Consensus       108 ~~G~y~~~C~e--~CG~~H~~M~g~v~V~  134 (135)
T 2cua_A          108 RPGEYRIICNQ--YCGLGHQNMFGTIVVK  134 (135)
T ss_dssp             SCEEEEEECCS--CCSTTSTTCEEEEEEE
T ss_pred             CCEEEEEECcc--cCCCCcCCCEEEEEEE
Confidence            99999999987  554   6899999986

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}

Probab=97.10  E-value=0.0012  Score=59.81  Aligned_cols=77  Identities=25%  Similarity=0.358  Sum_probs=49.3

Q ss_pred             CeEecCceeeeeeec----------CCceEEEecccCCCCCCCCCCc-c--ccC-----CCCcEEEe-------------
Q 016941           49 NRFLVNDTLFFKYKK----------GSDSVLLVNKDDYDSCNTKKPL-L--KLD-----SGDSEFKL-------------   97 (380)
Q Consensus        49 kTF~VGDTLVFkY~a----------G~HSVveVnK~dYdsCn~snpI-~--~fS-----sGndvVtL-------------   97 (380)
                      ..+++||.|.+-...          ....|++|++++|+.|+..... .  .-+     .|...|++             
T Consensus        52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E  131 (177)
T 2x11_B           52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  131 (177)
T ss_dssp             EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence            468999999876432          1344788999999999875432 1  111     13333321             


Q ss_pred             cccc-ceEEEeCCC-----CcCCCCCeEEEEecCCCC
Q 016941           98 DRSG-PFYFISGNH-----DHCQKGQKLIVVVLHERP  128 (380)
Q Consensus        98 dkpG-~yYFICGV~-----gHCq~GMKLaInV~asss  128 (380)
                      =++| .||||+.-.     +-|   |||.|.|.....
T Consensus       132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~  165 (177)
T 2x11_B          132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS  165 (177)
T ss_dssp             CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred             ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence            1256 788997432     346   999999987764

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=96.58  E-value=0.014  Score=50.00  Aligned_cols=88  Identities=13%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             EEEecCCCCCccCCCCCcccccCCCeEec-CceeeeeeecCC--------ceEEEeccc----------------CCCCC
Q 016941           25 KFNVGGKHGWVTNPGENYNKWSGRNRFLV-NDTLFFKYKKGS--------DSVLLVNKD----------------DYDSC   79 (380)
Q Consensus        25 tyvVGGs~GWt~~P~~nYt~WAS~kTF~V-GDTLVFkY~aG~--------HSVveVnK~----------------dYdsC   79 (380)
                      ++.|..+++..|.+.        .+++.. |+++.|.+.+..        |+++..+.+                +|-.=
T Consensus         4 ~v~i~~~d~M~F~p~--------~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~   75 (125)
T 3fsa_A            4 SVDIQGNDQMQFNTN--------AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKP   75 (125)
T ss_dssp             EEEEEBCTTSCBSCS--------EEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCT
T ss_pred             EEEEEccCCcEEecC--------EEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCC
Confidence            455666667888652        445544 999988886533        998776322                33221


Q ss_pred             CCCCCc---cccCCCCc-EEEec-----cccceEEEeCCCCcCCCCCeEEEEec
Q 016941           80 NTKKPL---LKLDSGDS-EFKLD-----RSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        80 n~snpI---~~fSsGnd-vVtLd-----kpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +..+.+   ..+..|.. +++++     ++|.|-|+|.  +|=  |||-.|.|.
T Consensus        76 ~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~  125 (125)
T 3fsa_A           76 DDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK  125 (125)
T ss_dssp             TCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred             CCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence            111111   12345553 44443     6699999999  787  999999873

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E

Probab=96.51  E-value=0.002  Score=56.30  Aligned_cols=76  Identities=29%  Similarity=0.427  Sum_probs=49.4

Q ss_pred             eEecCceeeeeeecC---------CceEEEecccCCCCCCCCC-Cc--cccC--CCCcEEEec-------------ccc-
Q 016941           50 RFLVNDTLFFKYKKG---------SDSVLLVNKDDYDSCNTKK-PL--LKLD--SGDSEFKLD-------------RSG-  101 (380)
Q Consensus        50 TF~VGDTLVFkY~aG---------~HSVveVnK~dYdsCn~sn-pI--~~fS--sGndvVtLd-------------kpG-  101 (380)
                      .+++||.|.|-....         ...|++|++++|+.|+... ..  ..-+  .+...|++.             ++| 
T Consensus        24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~  103 (140)
T 2vsm_B           24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK  103 (140)
T ss_dssp             CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred             EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence            356799998875432         2457889999999998863 21  1111  222233221             355 


Q ss_pred             ceEEEeCCC-----------CcCCC-CCeEEEEecC
Q 016941          102 PFYFISGNH-----------DHCQK-GQKLIVVVLH  125 (380)
Q Consensus       102 ~yYFICGV~-----------gHCq~-GMKLaInV~a  125 (380)
                      .||||+.-.           |-|.. .|||.|.|..
T Consensus       104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~  139 (140)
T 2vsm_B          104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH  139 (140)
T ss_dssp             EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence            888888644           47864 8999999964

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*

Probab=96.18  E-value=0.015  Score=52.93  Aligned_cols=98  Identities=20%  Similarity=0.361  Sum_probs=55.2

Q ss_pred             cccceEEEecCCCCCccCCCCCcccccC--CCeEecCceeeeeeecC-----------CceEEEecccCCCCCCCCC-Cc
Q 016941           20 SSHALKFNVGGKHGWVTNPGENYNKWSG--RNRFLVNDTLFFKYKKG-----------SDSVLLVNKDDYDSCNTKK-PL   85 (380)
Q Consensus        20 ~AsA~tyvVGGs~GWt~~P~~nYt~WAS--~kTF~VGDTLVFkY~aG-----------~HSVveVnK~dYdsCn~sn-pI   85 (380)
                      .+++..+.|=    |..   .|--.+..  ...+++||.|.+-....           ...|++|++++|+.|+... ..
T Consensus        26 ~~sa~rh~Vy----WNS---sNp~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~   98 (182)
T 3czu_B           26 MDAADRHTVF----WNS---SNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQ   98 (182)
T ss_dssp             ---CCEEEEE----CST---TCGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGG
T ss_pred             hhhccccceE----EcC---CCccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCc
Confidence            3445556665    853   12222222  34689999998864321           2457889999999998764 21


Q ss_pred             ccc------C-CCCcEEE--------------ecccc-ceEEEeC----CCCcCCCCCeEEEEecCCCC
Q 016941           86 LKL------D-SGDSEFK--------------LDRSG-PFYFISG----NHDHCQKGQKLIVVVLHERP  128 (380)
Q Consensus        86 ~~f------S-sGndvVt--------------LdkpG-~yYFICG----V~gHCq~GMKLaInV~asss  128 (380)
                      ..+      . .|...|+              + ++| .||||+.    .++.|   |||.|.|.....
T Consensus        99 ~~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF-~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~  163 (182)
T 3czu_B           99 VRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF-KEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT  163 (182)
T ss_dssp             EEEEECCTTCTTSCCEEEEECCSCCSCTTSCCC-CTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred             EEEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeE-eCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence            111      1 1222222              2 355 7888884    33566   999999985543

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=95.36  E-value=0.015  Score=56.09  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             CCCeEecCceeeeeeecC---CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCCCCeEE
Q 016941           47 GRNRFLVNDTLFFKYKKG---SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQKGQKLI  120 (380)
Q Consensus        47 S~kTF~VGDTLVFkY~aG---~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~GMKLa  120 (380)
                      ...+++.||+|+|++.+.   .|++..-.......|..       ..|.   ..|+++++|+|||.|...+|-..||+..
T Consensus        55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i-------~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~  127 (447)
T 2dv6_A           55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN-------GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN  127 (447)
T ss_dssp             CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC-------STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred             CeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec-------CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence            457899999999998653   27665422222223432       2232   3577788999999999989988899999


Q ss_pred             EEecCCC
Q 016941          121 VVVLHER  127 (380)
Q Consensus       121 InV~ass  127 (380)
                      |.|....
T Consensus       128 i~V~~~~  134 (447)
T 2dv6_A          128 IQVLPGN  134 (447)
T ss_dssp             EEEESSC
T ss_pred             EEEeCCc
Confidence            9997654

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}

Probab=95.16  E-value=0.019  Score=50.22  Aligned_cols=74  Identities=26%  Similarity=0.368  Sum_probs=48.2

Q ss_pred             eEecCceeeeeeecC------------CceEEEecccCCCCCCCCC-Ccccc--C--CCCcEEE--------------ec
Q 016941           50 RFLVNDTLFFKYKKG------------SDSVLLVNKDDYDSCNTKK-PLLKL--D--SGDSEFK--------------LD   98 (380)
Q Consensus        50 TF~VGDTLVFkY~aG------------~HSVveVnK~dYdsCn~sn-pI~~f--S--sGndvVt--------------Ld   98 (380)
                      .+++||.|.+-....            ...|++|++++|+.|+... ....+  +  .+...|+              + 
T Consensus        23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF-  101 (141)
T 3d12_B           23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF-  101 (141)
T ss_dssp             CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC-
T ss_pred             EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee-
Confidence            578899998875332            2447889999999998862 22111  1  1222221              2 


Q ss_pred             ccc-ceEEEeCCC-----------CcCCC-CCeEEEEec
Q 016941           99 RSG-PFYFISGNH-----------DHCQK-GQKLIVVVL  124 (380)
Q Consensus        99 kpG-~yYFICGV~-----------gHCq~-GMKLaInV~  124 (380)
                      ++| .||||+.-.           |-|.. .|||.|.|.
T Consensus       102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~  140 (141)
T 3d12_B          102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG  140 (141)
T ss_dssp             CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred             eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence            255 889998543           47864 899999985

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=95.04  E-value=0.053  Score=48.18  Aligned_cols=67  Identities=13%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             CCCeEecCceeeeeeecC--CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCC---CCe
Q 016941           47 GRNRFLVNDTLFFKYKKG--SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQK---GQK  118 (380)
Q Consensus        47 S~kTF~VGDTLVFkY~aG--~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~---GMK  118 (380)
                      +...+.+|+.++|...+.  .|+...-   ++..     . .....|.   ..|+.+++|.|||+|..  .|..   +|+
T Consensus        93 n~l~VP~G~~Vr~~vTS~DViHsf~IP---~lgi-----k-~da~PG~~n~~~~~~~kpG~y~g~Cse--~CG~~Hs~M~  161 (168)
T 3s8f_B           93 NPIEVPQGAEIVFKITSPDVIHGFHVE---GTNI-----N-VEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF  161 (168)
T ss_dssp             SSEEEETTSEEEEEEECSSSCEEEEET---TSSC-----E-EEECTTBCEEEEEECCSCEEEEEECCS--CCSTTGGGCE
T ss_pred             CEEEEeCCCeEEEEEecCCceEEEEEC---CCCe-----E-EEecCCceeEEEEEeCCCEEEEEECCc--CCCCCcCCCE
Confidence            456788888888887653  2444331   1110     0 0112333   46889999999999996  5654   699


Q ss_pred             EEEEec
Q 016941          119 LIVVVL  124 (380)
Q Consensus       119 LaInV~  124 (380)
                      ..|.|.
T Consensus       162 g~V~V~  167 (168)
T 3s8f_B          162 GTIVVK  167 (168)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999986

>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*

Probab=94.88  E-value=0.047  Score=47.67  Aligned_cols=76  Identities=25%  Similarity=0.346  Sum_probs=48.0

Q ss_pred             CeEecCceeeeeeecC----------CceEEEecccCCCCCCCCCCc-c--ccC-----CCCcEEEe-------------
Q 016941           49 NRFLVNDTLFFKYKKG----------SDSVLLVNKDDYDSCNTKKPL-L--KLD-----SGDSEFKL-------------   97 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG----------~HSVveVnK~dYdsCn~snpI-~--~fS-----sGndvVtL-------------   97 (380)
                      ..+++||.|.+-....          ...|++|++++|+.|+..... .  .-+     .+...|++             
T Consensus        23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E  102 (138)
T 1shx_A           23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence            4688999998764321          344788999999999875431 1  111     13333321             


Q ss_pred             cccc-ceEEEeCCC-----CcCCCCCeEEEEecCCC
Q 016941           98 DRSG-PFYFISGNH-----DHCQKGQKLIVVVLHER  127 (380)
Q Consensus        98 dkpG-~yYFICGV~-----gHCq~GMKLaInV~ass  127 (380)
                      =++| .||||+.-.     +-|   |||.|.|....
T Consensus       103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~  135 (138)
T 1shx_A          103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN  135 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred             ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence            1256 788897432     346   99999997654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.81  E-value=0.075  Score=56.09  Aligned_cols=68  Identities=13%  Similarity=0.145  Sum_probs=46.9

Q ss_pred             CCCeEecCceeeeeeecC------CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCCC-
Q 016941           47 GRNRFLVNDTLFFKYKKG------SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQKG-  116 (380)
Q Consensus        47 S~kTF~VGDTLVFkY~aG------~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~G-  116 (380)
                      ...++.+||.|+|...+.      .|++....   +.      .......|.   ..|+.+++|.|||+|..  +|..+ 
T Consensus       558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~H  626 (638)
T 3sbq_A          558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALH  626 (638)
T ss_dssp             CEEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTC
T ss_pred             CEEEEecCceeEEEEecCCcCCCceeeeEecC---CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCc
Confidence            367899999999998763      46664421   11      001122343   36888999999999998  77654 


Q ss_pred             --CeEEEEecC
Q 016941          117 --QKLIVVVLH  125 (380)
Q Consensus       117 --MKLaInV~a  125 (380)
                        |+..|.|..
T Consensus       627 s~M~G~ViVEP  637 (638)
T 3sbq_A          627 MEMVGRMMVEP  637 (638)
T ss_dssp             TTCEEEEEEEC
T ss_pred             ccceEEEEEec
Confidence              999999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=93.37  E-value=0.1  Score=54.46  Aligned_cols=68  Identities=9%  Similarity=0.038  Sum_probs=46.0

Q ss_pred             CCeEecCceeeeeeecC------CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCC---CCcCCC
Q 016941           48 RNRFLVNDTLFFKYKKG------SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGN---HDHCQK  115 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG------~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV---~gHCq~  115 (380)
                      ..++.+||+|+|.+.+.      .|++..-+ ... .+       ....|.   ..|+++++|.|||.|..   ..|  .
T Consensus       514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv-~~-------~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~  582 (595)
T 1fwx_A          514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGV-AM-------EIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--M  582 (595)
T ss_dssp             EEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTE-EE-------EECTTCEEEEEEECCSCEEEEEECCSCCSTTC--T
T ss_pred             EEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCc-ce-------eeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--c
Confidence            56889999999998762      46665421 110 01       122343   36889999999999984   234  4


Q ss_pred             CCeEEEEecCC
Q 016941          116 GQKLIVVVLHE  126 (380)
Q Consensus       116 GMKLaInV~as  126 (380)
                      ||+..|.|...
T Consensus       583 gM~G~IiV~p~  593 (595)
T 1fwx_A          583 EMRGRMLVEPK  593 (595)
T ss_dssp             TCEEEEEEECC
T ss_pred             CCEEEEEEEcC
Confidence            99999999754

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}

Probab=93.04  E-value=0.082  Score=47.11  Aligned_cols=76  Identities=25%  Similarity=0.408  Sum_probs=46.1

Q ss_pred             CeEecCceeeeeeecC-----------CceEEEecccCCCCCCCCCCc-ccc--C-----CCCcEE--E-----------
Q 016941           49 NRFLVNDTLFFKYKKG-----------SDSVLLVNKDDYDSCNTKKPL-LKL--D-----SGDSEF--K-----------   96 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG-----------~HSVveVnK~dYdsCn~snpI-~~f--S-----sGndvV--t-----------   96 (380)
                      ..+++||.|.+-....           ...|++|++++|+.|+....- ..+  +     .|...|  +           
T Consensus        32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~  111 (157)
T 2wo3_B           32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF  111 (157)
T ss_dssp             EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence            4688999998875332           123788999999999886521 111  1     122222  2           


Q ss_pred             -ecccc-ceEEEeCCC-----CcCCCCCeEEEEecCCCC
Q 016941           97 -LDRSG-PFYFISGNH-----DHCQKGQKLIVVVLHERP  128 (380)
Q Consensus        97 -LdkpG-~yYFICGV~-----gHCq~GMKLaInV~asss  128 (380)
                       + ++| .||||+.-.     +-|   |||.|.|.....
T Consensus       112 EF-~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~~  146 (157)
T 2wo3_B          112 EF-RPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQE  146 (157)
T ss_dssp             CC-CTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC-
T ss_pred             ee-eCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCCC
Confidence             2 255 789998543     356   577777765543

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=87.83  E-value=0.39  Score=44.29  Aligned_cols=77  Identities=10%  Similarity=0.077  Sum_probs=47.7

Q ss_pred             CCeEecCceeeeeeecCC-----ceEEE------ecccCCCCC--CCCCCccccCCCC---cEEEeccccceEEEeCCCC
Q 016941           48 RNRFLVNDTLFFKYKKGS-----DSVLL------VNKDDYDSC--NTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHD  111 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~-----HSVve------VnK~dYdsC--n~snpI~~fSsGn---dvVtLdkpG~yYFICGV~g  111 (380)
                      ..+++.||+++|.+.+..     |.+..      |-+++...-  ...+-+ ....|.   ..|..+++|.|.|.|-+..
T Consensus       196 ~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g~~~~~~~~~Dtv-~v~pg~~~~v~~~~~~pG~~~~hCH~~~  274 (288)
T 3gdc_A          196 PVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEYTDTI-SQVQGQRGILELRFPYPGKFMFHAHKTE  274 (288)
T ss_dssp             CEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETTCCSSCSEEESEE-EEETTCEEEEEECCCSCEEEEEECSSHH
T ss_pred             ccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCCCccCCCceeeEE-EeCCCceEEEEEECCCCEEEEEEecChH
Confidence            457899999998886532     44422      211111000  000111 112233   2566788999999999999


Q ss_pred             cCCCCCeEEEEecC
Q 016941          112 HCQKGQKLIVVVLH  125 (380)
Q Consensus       112 HCq~GMKLaInV~a  125 (380)
                      |=++||.-.|+|.+
T Consensus       275 H~~~GM~~~~~V~~  288 (288)
T 3gdc_A          275 FAELGWMGFFEVSA  288 (288)
T ss_dssp             HHTTTCEEEEEEEC
T ss_pred             HHhcCCCEEEEEeC
Confidence            99999999999864

>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0

Probab=87.33  E-value=0.71  Score=40.09  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=26.1

Q ss_pred             CeEecCceeeeeeecC-----------CceEEEecccCCCCCCCCC
Q 016941           49 NRFLVNDTLFFKYKKG-----------SDSVLLVNKDDYDSCNTKK   83 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG-----------~HSVveVnK~dYdsCn~sn   83 (380)
                      ..+++||.|.+-....           ...++.|++++|+.|+...
T Consensus        22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   67 (132)
T 3hei_B           22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS   67 (132)
T ss_dssp             EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred             EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence            4578999997765332           2346789999999999765

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=86.77  E-value=0.72  Score=43.04  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=48.2

Q ss_pred             CeEecCceeeeeeecC-----CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCC-----cCCC
Q 016941           49 NRFLVNDTLFFKYKKG-----SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHD-----HCQK  115 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG-----~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~g-----HCq~  115 (380)
                      ++++.||+|++++.+.     -|.+..-...+.+...   .+.....|.   ..|+++++|+|||-|-..+     |-..
T Consensus        66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~~---~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~  142 (333)
T 1mzy_A           66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGG---GLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS  142 (333)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGG---GGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred             EEecCCCEEEEEEEECCCCcccccceecCCCCCCCCC---ceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence            5789999999998774     2665442211111100   111123443   3678889999999998864     6778


Q ss_pred             CCeEEEEecCC
Q 016941          116 GQKLIVVVLHE  126 (380)
Q Consensus       116 GMKLaInV~as  126 (380)
                      ||.-.|.|...
T Consensus       143 Gl~G~~iV~~~  153 (333)
T 1mzy_A          143 GMAGCIMVLPR  153 (333)
T ss_dssp             TCEEEEEEECT
T ss_pred             CCEEEEEEccC
Confidence            99888888643

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=85.25  E-value=0.83  Score=42.56  Aligned_cols=75  Identities=20%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             CeEecCceeeeeeecC-----CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCC----cCCCC
Q 016941           49 NRFLVNDTLFFKYKKG-----SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHD----HCQKG  116 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG-----~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~g----HCq~G  116 (380)
                      ++++.||+|++++.+.     .|.+..-.....+  + ...+.....|.   ..|+++++|+|||-|...+    |-..|
T Consensus        67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~--~-~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G  143 (336)
T 1oe1_A           67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL--G-GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG  143 (336)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred             EEEcCCCEEEEEEEcCCCCCccccceECCCCCCC--C-CcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence            4789999999988774     3665442111000  0 01111123443   3677889999999999864    55689


Q ss_pred             CeEEEEecCC
Q 016941          117 QKLIVVVLHE  126 (380)
Q Consensus       117 MKLaInV~as  126 (380)
                      |.-.|.|...
T Consensus       144 l~G~liV~~~  153 (336)
T 1oe1_A          144 MSGTLMVLPR  153 (336)
T ss_dssp             CEEEEEEECT
T ss_pred             CeEEEEEecC
Confidence            9988888753

>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*

Probab=83.93  E-value=2.6  Score=40.56  Aligned_cols=31  Identities=16%  Similarity=0.348  Sum_probs=25.8

Q ss_pred             EEEeccccceEEEeCCCCcCCC---CCeEEEEecCC
Q 016941           94 EFKLDRSGPFYFISGNHDHCQK---GQKLIVVVLHE  126 (380)
Q Consensus        94 vVtLdkpG~yYFICGV~gHCq~---GMKLaInV~as  126 (380)
                      .|+.+++|.||..|..  .|..   .|++.|.|...
T Consensus       232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~  265 (298)
T 3hb3_B          232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ  265 (298)
T ss_dssp             EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred             EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence            6789999999999986  6765   49999998754

>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A

Probab=82.41  E-value=1.2  Score=41.89  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=46.5

Q ss_pred             CCeEecCceeeeeeecC-----CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCC---CcCCCC
Q 016941           48 RNRFLVNDTLFFKYKKG-----SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNH---DHCQKG  116 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG-----~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~---gHCq~G  116 (380)
                      .++++.||+|++++.+.     .|++..=--...|. . .. ......|.   ..|+++++|+|||-|...   .|-..|
T Consensus        71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG-~-~~-~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G  147 (327)
T 1kbv_A           71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG-G-AA-ATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG  147 (327)
T ss_dssp             BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG-G-TT-TTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred             eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC-C-Cc-ceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence            45899999999988765     35553310000110 0 00 01123343   267778999999999763   355789


Q ss_pred             CeEEEEecCC
Q 016941          117 QKLIVVVLHE  126 (380)
Q Consensus       117 MKLaInV~as  126 (380)
                      |.-.|.|...
T Consensus       148 l~G~~iV~~~  157 (327)
T 1kbv_A          148 MYGLILVEPK  157 (327)
T ss_dssp             CEEEEEEECT
T ss_pred             eEEEEEEecC
Confidence            9988888754

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=82.28  E-value=0.8  Score=44.21  Aligned_cols=77  Identities=14%  Similarity=0.118  Sum_probs=47.0

Q ss_pred             CCeEecCceeeeeeecC-----CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCC---CCcCCCC
Q 016941           48 RNRFLVNDTLFFKYKKG-----SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGN---HDHCQKG  116 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG-----~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV---~gHCq~G  116 (380)
                      .++++.||+|++++.+.     .|++..=--...|.=  .. ......|.   ..|+++++|+|||-|-.   ..|=..|
T Consensus        61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG~--~~-~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G  137 (442)
T 2zoo_A           61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGGG--AE-SSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG  137 (442)
T ss_dssp             BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGG--GG-GCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred             cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCCC--Cc-cEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCc
Confidence            45789999999988775     355543100001100  00 01123343   26778899999999943   3577789


Q ss_pred             CeEEEEecCCC
Q 016941          117 QKLIVVVLHER  127 (380)
Q Consensus       117 MKLaInV~ass  127 (380)
                      |...|.|....
T Consensus       138 l~G~~iv~~~~  148 (442)
T 2zoo_A          138 MYGLILVEPKE  148 (442)
T ss_dssp             CEEEEEEECTT
T ss_pred             cEEEEEEeCCC
Confidence            98888887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	380
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	1e-37
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	4e-35
d1f56a_	91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	2e-29
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	9e-29

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  129 bits (325), Expect = 1e-37
 Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 26  FNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPL 85
           + VGG  GW  N       W    RF   D L F Y     +V++VN+  + +CNT    
Sbjct: 3   YVVGGSGGWTFN----TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA 58

Query: 86  LKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
               SG  + KL + G  YFI     HCQ G K+ V  L
Sbjct: 59  KVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score =  122 bits (308), Expect = 4e-35
 Identities = 39/102 (38%), Positives = 52/102 (50%)

Query: 23  ALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTK 82
           A    VG   GW T    +Y KW+  N+F V D+L F Y     +VL V+++ + SCN+ 
Sbjct: 2   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61

Query: 83  KPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
            P     SG     L R G FYF+ G   HCQ GQK+ + V 
Sbjct: 62  SPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 103

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  107 bits (268), Expect = 2e-29
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 31  KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDS 90
             GW           +    F   D L FKY KG  +V+ VN   Y SC+  +      S
Sbjct: 4   NIGWSF-----NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSS 58

Query: 91  GDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVV 123
           G    KL R G  YFI     HC  G K+ +  
Sbjct: 59  GQDRIKLTR-GQNYFICSFPGHCGGGMKIAINA 90

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  105 bits (264), Expect = 9e-29
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 22  HALKFNVGGKHGWVTNPG-ENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVN-KDDYDSC 79
            +    VG   GW        Y++W+    F V D+L F +   + +V  +  K  +D+C
Sbjct: 2   QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDAC 61

Query: 80  NTKKPLLKLDSG-DSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
           N       ++       +LD  G  YF+     HC  GQKL + V+
Sbjct: 62  NFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVV 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	100.0
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1f56a_	91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	99.97
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	99.1
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	99.05
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	99.02
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.98
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.95
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	98.88
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.86
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.86
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	98.79
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	98.77
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	98.64
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.63
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	98.61
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	98.58
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.54
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	98.17
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	97.9
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	97.71
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	97.7
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	97.42
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	97.2
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	96.87
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	96.43
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	96.31
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	96.18
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	96.12
d1shxa1	138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	96.03
d1ikop_	141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	95.63
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	95.42
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	95.04
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	94.05
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	93.23
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	92.06
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	91.63
d2q9oa1	162	Laccase {Melanocarpus albomyces [TaxId: 204285]}	90.77
d1kbva2	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	89.13
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	86.82
d1kcwa2	146	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	86.69
d1kv7a1	140	multi-copper oxidase CueO {Escherichia coli [TaxId	83.66
d2j5wa2	145	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	82.61
d1sddb2	139	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	82.29

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=1.9e-37  Score=253.75  Aligned_cols=104  Identities=38%  Similarity=0.715  Sum_probs=99.5

Q ss_pred             cceEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEecccc
Q 016941           22 HALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSG  101 (380)
Q Consensus        22 sA~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG  101 (380)
                      +|++|+|||++||++++..||++|+++++|+|||+|+|+|+.+.|+|+||++++|+.|+..+++..+++|++.|+|+++|
T Consensus         1 ~at~~~VGg~~gW~~~~~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~g   80 (104)
T d1ws8a_           1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG   80 (104)
T ss_dssp             CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred             CCcEEEeCCcCccCcCCCcCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEecCc
Confidence            47899999999999877789999999999999999999999999999999999999999999988899999999999999


Q ss_pred             ceEEEeCCCCcCCCCCeEEEEecC
Q 016941          102 PFYFISGNHDHCQKGQKLIVVVLH  125 (380)
Q Consensus       102 ~yYFICGV~gHCq~GMKLaInV~a  125 (380)
                      +|||||++++||++||||+|+|..
T Consensus        81 ~~yF~C~~~~HC~~Gmkl~I~V~P  104 (104)
T d1ws8a_          81 TFYFLCGIPGHCQLGQKVEIKVDP  104 (104)
T ss_dssp             EEEEECCSTTTTTTTCEEEEEECC
T ss_pred             cEEEECCCcchhhCCCEEEEEECC
Confidence            999999999999999999999963

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=2.3e-36  Score=246.47  Aligned_cols=95  Identities=36%  Similarity=0.691  Sum_probs=91.3

Q ss_pred             EEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccceE
Q 016941           25 KFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFY  104 (380)
Q Consensus        25 tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~yY  104 (380)
                      .|+|||+.||++    +|++||++++|++||+|+|+|+++.|+|+||+|++|+.|+..+++..+++|++.|+|++ |++|
T Consensus         2 ~y~VGg~~GW~~----~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~-G~~Y   76 (96)
T d2cbpa_           2 VYVVGGSGGWTF----NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQSY   76 (96)
T ss_dssp             EEETTGGGCSCS----SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCS-EEEE
T ss_pred             EEEcCCCCCCCc----CHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCCeEEEeCC-CCCE
Confidence            699999999974    69999999999999999999999999999999999999999999999999999999987 9999


Q ss_pred             EEeCCCCcCCCCCeEEEEec
Q 016941          105 FISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       105 FICGV~gHCq~GMKLaInV~  124 (380)
                      |||++++||++||||+|+|+
T Consensus        77 Fic~~~~hC~~G~Kl~V~Vl   96 (96)
T d2cbpa_          77 FICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EECCSTTTGGGTCEEEEEEC
T ss_pred             EEeCCCCcCcCCCEEEEEEC
Confidence            99999999999999999985

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=7.2e-35  Score=238.74  Aligned_cols=105  Identities=27%  Similarity=0.517  Sum_probs=94.8

Q ss_pred             cceEEEecCCCCCccCCCC-CcccccCCCeEecCceeeeeeecCCceEEEe-cccCCCCCCCCCCccccCCC-CcEEEec
Q 016941           22 HALKFNVGGKHGWVTNPGE-NYNKWSGRNRFLVNDTLFFKYKKGSDSVLLV-NKDDYDSCNTKKPLLKLDSG-DSEFKLD   98 (380)
Q Consensus        22 sA~tyvVGGs~GWt~~P~~-nYt~WAS~kTF~VGDTLVFkY~aG~HSVveV-nK~dYdsCn~snpI~~fSsG-ndvVtLd   98 (380)
                      +|++|+|||.+||+++++. +|++|+++++|+|||+|+|+|+.+.|+|+|| ++++|+.|+..+++..+.+| .+.|+|+
T Consensus         2 ~at~~~VGg~~gW~~~~~~~~Y~~Wa~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~y~~c~~~~~~~~~~~~~~~~~~l~   81 (110)
T d1jera_           2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD   81 (110)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred             cceEEEeCCCCCcccCCCcchhhhhhcCCcEeCCCEEEEEeCCCCceEEEECCcccccccccCCccccccCCCcEEEEec
Confidence            5789999999999986543 3999999999999999999999999999999 59999999999987655554 5678999


Q ss_pred             cccceEEEeCCCCcCCCCCeEEEEecCC
Q 016941           99 RSGPFYFISGNHDHCQKGQKLIVVVLHE  126 (380)
Q Consensus        99 kpG~yYFICGV~gHCq~GMKLaInV~as  126 (380)
                      ++|++||||++++||++||||+|+|+++
T Consensus        82 ~~G~~yF~C~~~~HC~~Gmk~~I~V~~a  109 (110)
T d1jera_          82 ELGMHYFVCTVGTHCSNGQKLSINVVAA  109 (110)
T ss_dssp             SSEEEEEECCSTTTGGGTCEEEEEEECC
T ss_pred             CCccEEEECCCcChhhcCCEEEEEEecC
Confidence            9999999999999999999999999975

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.97  E-value=3e-31  Score=213.55  Aligned_cols=90  Identities=33%  Similarity=0.591  Sum_probs=84.5

Q ss_pred             EEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccceE
Q 016941           25 KFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFY  104 (380)
Q Consensus        25 tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~yY  104 (380)
                      .|.||    |++     |.+||++++|+|||+|+|+|.++.|+|+||++++|+.|+..+++..+++|++.|+|++ |++|
T Consensus         2 ~y~vG----W~~-----~~~Wa~~~~F~vGD~LvF~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~-g~~y   71 (91)
T d1f56a_           2 VYNIG----WSF-----NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNY   71 (91)
T ss_dssp             EEEEE----CSS-----SCBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECCS-EEEE
T ss_pred             EEccC----Ccc-----ccccccCCCCcCCCEEEEEEcCCCCEEEEECHHHhCcCCCCCCcccccCCCeEEEeCC-CCeE
Confidence            47775    975     6779999999999999999999999999999999999999999999999999999985 9999


Q ss_pred             EEeCCCCcCCCCCeEEEEec
Q 016941          105 FISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       105 FICGV~gHCq~GMKLaInV~  124 (380)
                      |||++.+||++||||.|+|.
T Consensus        72 fic~~~~HC~~Gmkl~I~V~   91 (91)
T d1f56a_          72 FICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EECCSTTTTTTTCEEEEEEC
T ss_pred             EEeCCCCcCccCCEEEEEEC
Confidence            99999999999999999984

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=99.10  E-value=1.1e-10  Score=90.23  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             EEEecCCCC-CccCCCCCcccccCCCeEecCceeeeeeecCC-ceEEEecccCCCCCCCCCC--------ccccCCC-Cc
Q 016941           25 KFNVGGKHG-WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS-DSVLLVNKDDYDSCNTKKP--------LLKLDSG-DS   93 (380)
Q Consensus        25 tyvVGGs~G-Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~-HSVveVnK~dYdsCn~snp--------I~~fSsG-nd   93 (380)
                      +++||.++| -.|.|        +..++++||+|+|.+..+. |++.. +..  +.+.....        ......+ ..
T Consensus         2 eV~vg~~~g~~~F~P--------~~i~v~~GdtV~f~n~~~~~h~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (99)
T d1bypa_           2 EVLLGSSDGGLAFVP--------SDLSIASGEKITFKNNAGFPHNDLF-DKK--EVPAGVDVTKISMPEEDLLNAPGEEY   70 (99)
T ss_dssp             EEEESCTTSCCSEES--------SEEEECTTEEEEEEECSSCCBCCEE-CTT--SSCTTCCHHHHSCCTTCCBCSTTCEE
T ss_pred             EEEEEecCCceEEcC--------CEEEECCCCEEEEEECCCCceeEEE-ecC--CCCCccccccCcccccccccCCCceE
Confidence            678997544 66655        3679999999999997664 55554 222  12211110        0011122 24


Q ss_pred             EEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           94 EFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        94 vVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +++++++|+|||+|..  ||+.||+-.|+|.
T Consensus        71 ~~tf~~~G~y~y~C~~--H~~~GM~G~I~V~   99 (99)
T d1bypa_          71 SVTLTEKGTYKFYCAP--HAGAGMVGKVTVN   99 (99)
T ss_dssp             EEEECSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             EEEecCCceEEEEECc--CCCCCCEEEEEEC
Confidence            7899999999999986  9999999999983

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=99.05  E-value=1.8e-10  Score=89.13  Aligned_cols=90  Identities=17%  Similarity=0.249  Sum_probs=60.8

Q ss_pred             ceEEEecCCCC-CccCCCCCcccccCCCeEecCceeeeeeecCC-ceEEEecccCCCCCCCCCCc-----cccCCCC-cE
Q 016941           23 ALKFNVGGKHG-WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS-DSVLLVNKDDYDSCNTKKPL-----LKLDSGD-SE   94 (380)
Q Consensus        23 A~tyvVGGs~G-Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~-HSVveVnK~dYdsCn~snpI-----~~fSsGn-dv   94 (380)
                      |+.+.||+++| -.|.|.        ..++++||+|+|.+..+. |+++....  ...+......     .....+. ..
T Consensus         1 a~~V~vg~~~g~~~F~P~--------~i~i~~GdtV~f~n~~~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   70 (98)
T d1iuza_           1 AQIVKLGGDDGSLAFVPS--------KISVAAGEAIEFVNNAGFPHNIVFDED--AVPAGVDADAISYDDYLNSKGETVV   70 (98)
T ss_dssp             CEEEEESCTTSCCSEESS--------EEEECTTCEEEEEECSSCCEEEEECTT--SSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred             CeEEEEecCCCcEEEeCC--------EEEECCCCEEEEEECCCCcccEEEeCC--CcccccccccccccCcccCCCcEEE
Confidence            46788998754 566653        579999999999996654 66654221  1112211110     0112222 47


Q ss_pred             EEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           95 FKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        95 VtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++++|+|||+|..  ||..||+-.|+|.
T Consensus        71 ~~f~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d1iuza_          71 RKLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             EECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EecCCCceEEEEeCC--CccCCCeEEEEEC
Confidence            889999999999986  9999999999984

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=99.02  E-value=1.7e-10  Score=89.28  Aligned_cols=90  Identities=16%  Similarity=0.182  Sum_probs=59.2

Q ss_pred             EEEecCCC-CCccCCCCCcccccCCCeEecCceeeeeeecCC-ceEEEecccCCCCCCC---------CCCccccCCCCc
Q 016941           25 KFNVGGKH-GWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS-DSVLLVNKDDYDSCNT---------KKPLLKLDSGDS   93 (380)
Q Consensus        25 tyvVGGs~-GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~-HSVveVnK~dYdsCn~---------snpI~~fSsGnd   93 (380)
                      ++.||.++ +-.|.|        +..++++||+|+|.+..+. |+++.......+.+..         .+..........
T Consensus         2 ~V~vg~~~g~~~F~P--------~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (102)
T d1kdja_           2 KVEVGDEVGNFKFYP--------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSF   73 (102)
T ss_dssp             EEEESCTTCCCCEES--------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEE
T ss_pred             EEEEeecCCceEEeC--------CEEEECCCCEEEEEECCCCceeEEEecCCCCCcccccccccCcccccccccCCccEE
Confidence            57788654 466655        3679999999999997765 7666543221111110         000111112234


Q ss_pred             EEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           94 EFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        94 vVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      .++++++|+|||+|..  ||+.||+-.|+|.
T Consensus        74 ~~~f~~~G~y~Y~C~~--H~~~GM~G~I~Ve  102 (102)
T d1kdja_          74 KAKVSTPGTYTFYCTP--HKSANMKGTLTVK  102 (102)
T ss_dssp             EECCCSCEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEeeCCCceEEEEecC--CcccCCeEEEEEC
Confidence            7888999999999986  9999999999984

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=3.6e-10  Score=86.97  Aligned_cols=89  Identities=15%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             eEEEecCCC-CCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCC-c-----cccCCC-CcEE
Q 016941           24 LKFNVGGKH-GWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKP-L-----LKLDSG-DSEF   95 (380)
Q Consensus        24 ~tyvVGGs~-GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snp-I-----~~fSsG-ndvV   95 (380)
                      +++.||.+. +-.|.|        +..++++||+|+|.+....|..+....+  ..|..... .     .....+ ..+|
T Consensus         2 ~TV~vg~~~g~~~F~P--------~~i~v~~GdtV~f~n~~~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~   71 (98)
T d2plta_           2 ATVKLGADSGALEFVP--------KTLTIKSGETVNFVNNAGFPHNIVFDED--AIPSGVNADAISRDDYLNAPGETYSV   71 (98)
T ss_dssp             EEEEESCTTCCSSEES--------SEEEECTTCEEEEEECSSCCEEEEECGG--GSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             eEEEEeeCCCceEEeC--------CEEEECCCCEEEEEECCCCceeEEEecC--CccccccCCcccccccccCCCceEEE
Confidence            467788654 466665        3679999999999887765444433222  12322211 0     011222 2478


Q ss_pred             EeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           96 KLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        96 tLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +++++|.|||+|..  ||+.||+-.|.|.
T Consensus        72 tf~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d2plta_          72 KLTAAGEYGYYCEP--HQGAGMVGKIIVQ   98 (98)
T ss_dssp             ECCSCEEEEEECGG--GGGGTCEEEEEEC
T ss_pred             EecCCceEEEEeCc--CCCCCCEEEEEEC
Confidence            89999999999975  9999999999984

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=98.95  E-value=1.1e-09  Score=85.04  Aligned_cols=90  Identities=18%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             eEEEecCCCC-CccCCCCCcccccCCCeEecCceeeeeeecCC-ceEEEecccCCCCCCCCC-C-----ccccCCCC-cE
Q 016941           24 LKFNVGGKHG-WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS-DSVLLVNKDDYDSCNTKK-P-----LLKLDSGD-SE   94 (380)
Q Consensus        24 ~tyvVGGs~G-Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~-HSVveVnK~dYdsCn~sn-p-----I~~fSsGn-dv   94 (380)
                      +++.||.++| -.|.|.        ..++++||+|+|.+..+. |+++..... ...+.... .     ......+. ..
T Consensus         3 ~tV~v~~~~g~~~F~P~--------~i~v~~GdtV~f~n~~~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (105)
T d2cj3a1           3 YTVKLGSDKGLLVFEPA--------KLTIKPGDTVEFLNNKVPPHNVVFDAAL-NPAKSADLAKSLSHKQLLMSPGQSTS   73 (105)
T ss_dssp             EEEEESCTTCCSSEESS--------EEEECTTCEEEEEECSSCCEEEEECSSS-STTCCHHHHHHHCEEEEECSTTCEEE
T ss_pred             EEEEEEeCCCceEEeCC--------EEEECCCCEEEEEECCCCceeeEeccCC-CCccccccCCcccccccccCCCcceE
Confidence            4567776554 777653        678999999999987765 555443222 21111100 0     01112222 24


Q ss_pred             EEe---ccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           95 FKL---DRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        95 VtL---dkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +.+   +++|+|||+|..  ||+.||+-.|+|.
T Consensus        74 ~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~V~  104 (105)
T d2cj3a1          74 TTFPADAPAGEYTFYCEP--HRGAGMVGKITVA  104 (105)
T ss_dssp             EECCTTCCSEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EEEEeccCCceEEEEeCC--CcCCCcEEEEEEe
Confidence            443   568999999986  9999999999996

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=98.88  E-value=1.4e-09  Score=85.40  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=60.9

Q ss_pred             EEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeecCC-ceEEEecccCCCC-C----CCCCCccccCCCC-cEEE
Q 016941           25 KFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS-DSVLLVNKDDYDS-C----NTKKPLLKLDSGD-SEFK   96 (380)
Q Consensus        25 tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~-HSVveVnK~dYds-C----n~snpI~~fSsGn-dvVt   96 (380)
                      +++||.+ .+-.|.|.        ..++++||+|+|.+..+. |+|+......... .    ...........|. ..++
T Consensus         2 ~V~~g~d~g~~~F~P~--------~iti~~GdtV~f~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~t   73 (99)
T d1plca_           2 DVLLGADDGSLAFVPS--------EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVA   73 (99)
T ss_dssp             EEEESCTTCCSCEESS--------EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEE
T ss_pred             EEEEEeCCCceEEeCC--------EEEECCCCEEEEEECCCCCccEEEccCcCCCccccccCcccccccccCCCceEEEe
Confidence            6788865 45777663        679999999999987655 9997642211110 0    1111111123344 4788


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++|.|+|+|.  .||..||+-.|+|.
T Consensus        74 F~~~G~y~Y~C~--pH~~~GM~G~I~V~   99 (99)
T d1plca_          74 LSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             cCCCceEEEEeC--CCcCCCcEEEEEEC
Confidence            999999999996  49999999999983

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.86  E-value=1.8e-09  Score=83.76  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             eEEEecCCCC-CccCCCCCcccccCCCeEecCceeeeeeecCC-ceEEEecccCCCCCCCCCC-----ccccCCCCc-EE
Q 016941           24 LKFNVGGKHG-WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS-DSVLLVNKDDYDSCNTKKP-----LLKLDSGDS-EF   95 (380)
Q Consensus        24 ~tyvVGGs~G-Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~-HSVveVnK~dYdsCn~snp-----I~~fSsGnd-vV   95 (380)
                      .++.||++.| -.|.|.        ..++++||+|+|.+.... |+++.........+.....     ......|.. .+
T Consensus         3 ~tV~vg~~~g~~~F~P~--------~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   74 (105)
T d2q5ba1           3 FTVKMGADSGLLQFEPA--------NVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEI   74 (105)
T ss_dssp             EEEEESCTTSCSSEESS--------EEEECTTEEEEEEECSSCCEEEEECGGGSGGGCHHHHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEEecCCCceEEeCC--------EEEECCCCEEEEEECCCCCceeEeecCcccccccccCCccccccccccCCceEEE
Confidence            4677887655 777663        679999999999986554 6776643332222221111     112234432 33


Q ss_pred             Ee---ccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           96 KL---DRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        96 tL---dkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      .+   +++|.|||+|..  ||+.||+..|+|.
T Consensus        75 ~f~~~~~~G~y~y~C~~--H~~~GM~G~I~Ve  104 (105)
T d2q5ba1          75 TFSSDFPAGTYTYYCAP--HRGAGMVGKITVE  104 (105)
T ss_dssp             EECTTSCSEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEeccCCceEEEEeCC--CCCCCCEEEEEEc
Confidence            33   457999999986  9999999999985

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=98.86  E-value=2.4e-09  Score=82.49  Aligned_cols=90  Identities=17%  Similarity=0.192  Sum_probs=59.5

Q ss_pred             ceEEEecCCCC-CccCCCCCcccccCCCeEecCceeeeeeecCC-ceEEEecc-c--CCCCCCCCCCccccCCC-CcEEE
Q 016941           23 ALKFNVGGKHG-WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS-DSVLLVNK-D--DYDSCNTKKPLLKLDSG-DSEFK   96 (380)
Q Consensus        23 A~tyvVGGs~G-Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~-HSVveVnK-~--dYdsCn~snpI~~fSsG-ndvVt   96 (380)
                      ..++.+|.+++ -.|.|        +..++++||+|+|.+..+. |+++.... .  ++...+....  ....+ ...++
T Consensus         2 ~~~v~~g~~~~~~~F~P--------~~i~V~~GdtV~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t   71 (97)
T d2jxma1           2 SVQIKMGTDKYAPLYEP--------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKL--AIAPGSFYSVT   71 (97)
T ss_dssp             CEEEEEEETTTEEEEES--------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCC--CCSCSCCEEEE
T ss_pred             eEEEEEccCCCceEEcC--------CEEEECCCCEEEEEECCCcceeEEEecCCCcccccccccccc--ccCcceEEEEe
Confidence            45677886544 55655        3679999999999997754 44443221 1  1111222211  11222 35799


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++|.|||+|..  ||..||+-.|+|.
T Consensus        72 f~~~G~y~Y~C~~--H~~~GM~G~I~Ve   97 (97)
T d2jxma1          72 LGTPGTYSFYCTP--HRGAGMVGTITVE   97 (97)
T ss_dssp             CCSCSEEEEECSS--TTTTTCEEEEEEC
T ss_pred             cCCCeEEEEEEcc--CCCCCCEEEEEEC
Confidence            9999999999986  9999999999984

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=98.79  E-value=4.7e-09  Score=85.38  Aligned_cols=86  Identities=15%  Similarity=0.045  Sum_probs=60.5

Q ss_pred             cCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccceEEEeC
Q 016941           29 GGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISG  108 (380)
Q Consensus        29 GGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~yYFICG  108 (380)
                      |++.+-.|.|        +..++++||+|+|.+....|+++.+...  ........ .........++++++|.|+|+|.
T Consensus        11 g~~g~m~F~P--------~~itI~~GdtV~f~n~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~tF~~~G~Y~Y~C~   79 (123)
T d1adwa_          11 GESGAMVFEP--------AFVRAEPGDVINFVPTDKSHNVEAIKEI--LPEGVESF-KSKINESYTLTVTEPGLYGVKCT   79 (123)
T ss_dssp             CSSCEEEEES--------SEEEECTTEEEEEEESSSSCCCEECTTS--CCTTCCCC-BCCTTCCEEEEECSCEEEEEECG
T ss_pred             CCCCcEEEeC--------CEEEECCCCEEEEEeCCCCcceecccCc--cccccccc-cccCCcceEEeccCCCeEEEEEc
Confidence            5566666665        3679999999999999888877654321  11111111 11122235899999999999999


Q ss_pred             CCCcCCCCCeEEEEecCCC
Q 016941          109 NHDHCQKGQKLIVVVLHER  127 (380)
Q Consensus       109 V~gHCq~GMKLaInV~ass  127 (380)
                      .  ||..||+-.|.|....
T Consensus        80 p--H~~~GM~G~I~Vg~~~   96 (123)
T d1adwa_          80 P--HFGMGMVGLVQVGDAP   96 (123)
T ss_dssp             G--GGGGTCEEEEEESSSC
T ss_pred             c--CCCCCCEEEEEECCCC
Confidence            7  9999999999997643

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=98.77  E-value=5.9e-09  Score=85.71  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=61.9

Q ss_pred             cCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCcccc-C-CCCcEEEeccccceEEE
Q 016941           29 GGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKL-D-SGDSEFKLDRSGPFYFI  106 (380)
Q Consensus        29 GGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~f-S-sGndvVtLdkpG~yYFI  106 (380)
                      |++.++.|.|.        ..++++||+|.|.+..+.|+|..+.....+     +..... . .....++++++|.|+|+
T Consensus        11 g~~g~m~F~P~--------~itI~~GDTV~f~n~~~~Hnv~~~~~~~~~-----~~~~~~~~~~~~~s~tF~~~G~y~Y~   77 (120)
T d1paza_          11 GAEGAMVFEPA--------YIKANPGDTVTFIPVDKGHNVESIKDMIPE-----GAEKFKSKINENYVLTVTQPGAYLVK   77 (120)
T ss_dssp             ETTEEEEEESS--------EEEECTTCEEEEEESSSSCCCEECTTCSCT-----TCCCCBCCTTCCEEEECCSCEEEEEE
T ss_pred             CCCCcEEEeCC--------EEEECCCCEEEEeeCCCcceEeeccccCcc-----cccccccccCceEEEEecCCCeEEEE
Confidence            55556777663        679999999999999888999765432221     111101 1 12358999999999999


Q ss_pred             eCCCCcCCCCCeEEEEecCCC
Q 016941          107 SGNHDHCQKGQKLIVVVLHER  127 (380)
Q Consensus       107 CGV~gHCq~GMKLaInV~ass  127 (380)
                      |..  ||..||+-.|.|....
T Consensus        78 Ctp--H~~~GM~G~I~Vg~~~   96 (120)
T d1paza_          78 CTP--HYAMGMIALIAVGDSP   96 (120)
T ss_dssp             CTT--TGGGTCEEEEEESSSC
T ss_pred             Eee--CCCCCCEEEEEECCCC
Confidence            987  9999999999998753

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.64  E-value=4e-08  Score=79.98  Aligned_cols=94  Identities=20%  Similarity=0.276  Sum_probs=61.0

Q ss_pred             ceEEEecC-CCCCccCCCCCcccccCCCeEecCceeeeeeecC-----CceEEEecccCC-------------CC-----
Q 016941           23 ALKFNVGG-KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-----SDSVLLVNKDDY-------------DS-----   78 (380)
Q Consensus        23 A~tyvVGG-s~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-----~HSVveVnK~dY-------------ds-----   78 (380)
                      ++++.|+- +++-.|.+        ...+++.||+|.|.|.+.     .|+++.+...+-             +.     
T Consensus        15 ~~tvev~~~~~~m~F~p--------~~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (139)
T d1qhqa_          15 AQTVEVRAAPDALAFAQ--------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPP   86 (139)
T ss_dssp             SEEEEEEBCSSSSSBSC--------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCC
T ss_pred             CeEEEEEecCCcceEcC--------CeEEECCCCEEEEEEeCCcccceeEEEeecccchhhHHHHHHhhhccchhccccC
Confidence            45666653 44566654        357899999999999664     388877643210             00     


Q ss_pred             CCCCCCc---cccCCCC---cEEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           79 CNTKKPL---LKLDSGD---SEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        79 Cn~snpI---~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      =+....+   .....|.   .+|+..++|.|+|+|.+.+||+.||+..|.|.
T Consensus        87 p~~~~v~~~t~~~~pg~s~~i~f~~~~~G~y~f~Ct~pgH~~~GM~G~i~V~  138 (139)
T d1qhqa_          87 PDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT  138 (139)
T ss_dssp             TTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             CCcccccccccccCCcceEEEEEecCCCeEEEEEcCCcCcccccCeEEEEEc
Confidence            0000101   0112222   25778899999999999999999999999885

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=98.63  E-value=1.7e-08  Score=78.67  Aligned_cols=89  Identities=16%  Similarity=0.232  Sum_probs=59.9

Q ss_pred             eEEEecCCCC-CccCCCCCcccccCCCeEecCceeeeeeec-CCceEEEecccCCCCCCCCC----CccccCCCC-cEEE
Q 016941           24 LKFNVGGKHG-WVTNPGENYNKWSGRNRFLVNDTLFFKYKK-GSDSVLLVNKDDYDSCNTKK----PLLKLDSGD-SEFK   96 (380)
Q Consensus        24 ~tyvVGGs~G-Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-G~HSVveVnK~dYdsCn~sn----pI~~fSsGn-dvVt   96 (380)
                      .++.||.++| -.|.|        ...++++||+|+|.+.. ..|+|+.....  ..++...    ....+..|. ..++
T Consensus         3 ~tv~~g~~~~~~~F~P--------~~i~v~~GdtV~~~n~~~~~H~~~~~~~~--~~~~~~~~~~~~~~~~~~g~t~~~t   72 (98)
T d1pcsa_           3 ATVKMGSDSGALVFEP--------STVTIKAGEEVKWVNNKLSPHNIVFDADG--VPADTAAKLSHKGLLFAAGESFTST   72 (98)
T ss_dssp             EEEEESCTTSCSSEES--------SEEEECTTCEEEEEECSSCCEEEEECCSS--SCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred             eEEEeeeCCCceEEeC--------CEEEECCCCEEEEeECCCCccceEEeccc--cCCCccccccccccccCCCcEEEEe
Confidence            3567886543 55544        26789999999999865 45998764211  1111100    011233443 4789


Q ss_pred             eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           97 LDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        97 LdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ++++|.|||+|..  |++.||+-.|.|.
T Consensus        73 f~~~G~y~Y~C~~--H~~~gM~G~I~Ve   98 (98)
T d1pcsa_          73 FTEPGTYTYYCEP--HRGAGMVGKVVVE   98 (98)
T ss_dssp             CCSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             ccCCceEEEEecc--CCCCCCEEEEEEC
Confidence            9999999999975  9999999999984

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=98.61  E-value=4.4e-08  Score=79.82  Aligned_cols=74  Identities=19%  Similarity=0.189  Sum_probs=52.4

Q ss_pred             CCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccceEEEeCCCCcCCCCCeEEEEecCC
Q 016941           48 RNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHE  126 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~yYFICGV~gHCq~GMKLaInV~as  126 (380)
                      ..++++||+|+|.+..+.|.++.+.....+.   .............++++++|.|+|+|..  ||..||+-.|.|...
T Consensus        22 ~ltV~~GDTV~f~n~d~~~h~~~~~~~~~~~---~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vgd~   95 (123)
T d1pmya_          22 LVRLKPGDSIKFLPTDKGHNVETIKGMAPDG---ADYVKTTVGQEAVVKFDKEGVYGFKCAP--HYMMGMVALVVVGDK   95 (123)
T ss_dssp             EEEECTTCEEEEECSSSSCCCEECTTSSCTT---CCCCBCCTTSCEEEECCSCEEEEEECST--TTTTTCEEEEEESSC
T ss_pred             EEEECCCCEEEEeeCCCCcccccccccCccc---ccccccccccccccccCCCceEEEEecc--CCCCCCEEEEEECCC
Confidence            6799999999999987777666543221111   0111111122358999999999999986  999999999999764

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=98.58  E-value=4.8e-08  Score=80.58  Aligned_cols=84  Identities=15%  Similarity=0.122  Sum_probs=59.1

Q ss_pred             cCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCC-CcEEEeccccceEEEe
Q 016941           29 GGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSG-DSEFKLDRSGPFYFIS  107 (380)
Q Consensus        29 GGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsG-ndvVtLdkpG~yYFIC  107 (380)
                      |++.+-.|.|        +..++++||+|.|.|....|++..+....  .+....  .....+ ...++++++|.|+|+|
T Consensus        11 g~~G~~~F~P--------~~itI~~GdTV~w~n~~~~~~~~~~~~~~--p~~~~~--~~~~~~~~~s~Tf~~~G~Y~Y~C   78 (124)
T d1bqka_          11 GKDGAMVFEP--------ASLKVAPGDTVTFIPTDKGHNVETIKGMI--PDGAEA--FKSKINENYKVTFTAPGVYGVKC   78 (124)
T ss_dssp             ETTEEEEEES--------SEEEECTTCEEEEECSSSSCCCEECTTCS--CTTCCC--CBCCTTCCEEEECCSCEEEEEEC
T ss_pred             CCCCceEEeC--------CEEEECCCCeEEEEECCCCcccccccccC--CCcccc--ccccCCccEEEecCCCceEEEEe
Confidence            4444455655        35799999999999988788876643221  121111  112222 3589999999999999


Q ss_pred             CCCCcCCCCCeEEEEecCC
Q 016941          108 GNHDHCQKGQKLIVVVLHE  126 (380)
Q Consensus       108 GV~gHCq~GMKLaInV~as  126 (380)
                      ..  ||..||+-.|+|...
T Consensus        79 ~p--H~~~GM~G~IvVgd~   95 (124)
T d1bqka_          79 TP--HYGMGMVGVVQVGDA   95 (124)
T ss_dssp             TT--TGGGTCEEEEEESSS
T ss_pred             cc--CcCCCCEEEEEECCC
Confidence            86  999999999999753

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=98.54  E-value=1e-07  Score=73.92  Aligned_cols=85  Identities=18%  Similarity=0.284  Sum_probs=58.1

Q ss_pred             EEEecCCC-CCccCCCCCcccccCCCeEecCceeeeeeecCC-ceEEEecccCCCCCCCCCCccccCCCC-cEEEecccc
Q 016941           25 KFNVGGKH-GWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS-DSVLLVNKDDYDSCNTKKPLLKLDSGD-SEFKLDRSG  101 (380)
Q Consensus        25 tyvVGGs~-GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~-HSVveVnK~dYdsCn~snpI~~fSsGn-dvVtLdkpG  101 (380)
                      ++.+|.+. .-.|.|        +..++.+||+|+|.+..+. |+++.....+..   ...  ..+..|. ..++++++|
T Consensus         4 ~v~~~~d~g~~~F~P--------~~i~I~~GdtV~f~n~d~~~h~~~~~~~~~~~---~~~--~~~~~g~~~~~tF~~~G   70 (91)
T d1bxua_           4 AIKMGADNGMLAFEP--------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS---HKD--LAFSPGETFEATFSEPG   70 (91)
T ss_dssp             EEEESCTTSCSSEES--------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC---EEE--EECSTTCEEEEECCSCE
T ss_pred             EEEEeeCCCceEEEC--------CEEEECCCCEEEEEECCcCCceEEeccccccc---ccc--cccCCCCCEEEEeccCc
Confidence            55666553 355655        3678999999999997655 555543222111   011  1223444 478999999


Q ss_pred             ceEEEeCCCCcCCCCCeEEEEec
Q 016941          102 PFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus       102 ~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      .|+|+|..  |+..|||-.|+|.
T Consensus        71 ~y~Y~C~~--H~~~gM~G~I~Ve   91 (91)
T d1bxua_          71 TYTYYCEP--HRGAGMVGKIVVQ   91 (91)
T ss_dssp             EEEEECTT--TGGGTCEEEEEEC
T ss_pred             eEEEEeCC--CCCCCCEEEEEEC
Confidence            99999987  9999999999984

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.17  E-value=1.5e-06  Score=68.46  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             CCeEecCceeeeeeecC-CceEEEecccCCCCCCCCCCccccCCC-CcEEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           48 RNRFLVNDTLFFKYKKG-SDSVLLVNKDDYDSCNTKKPLLKLDSG-DSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG-~HSVveVnK~dYdsCn~snpI~~fSsG-ndvVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ..++++||+|.|.++.. .|+|...... +..=.+...  .+..| ...++++++|.|||+|+.  |  .||+-.|.|.
T Consensus        34 ~i~V~~GdtV~f~N~d~~~H~v~~~~~~-~~~~~~~~~--~~~~g~~~~~tf~~pG~y~y~C~~--H--~~M~G~I~Ve  105 (105)
T d2ov0a1          34 ELHVKVGDTVTWINREAMPHNVHFVAGV-LGEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTP--H--PFMRGKVVVE  105 (105)
T ss_dssp             EEEECTTCEEEEEECSSSCBCCEECTTT-SSSSCEECC--CBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCceeEEEeccc-CCccccccc--ccCCCceEEEEecCCeEEEEEecC--C--CCCEEEEEEC
Confidence            57899999999988654 4998765321 111011111  12333 347899999999999998  5  6999999984

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=97.90  E-value=1.1e-05  Score=63.13  Aligned_cols=69  Identities=10%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             CCeEecCceeeeeeecC-CceEEEecc-cCCCCCCCCCCccccCCC-CcEEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           48 RNRFLVNDTLFFKYKKG-SDSVLLVNK-DDYDSCNTKKPLLKLDSG-DSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG-~HSVveVnK-~dYdsCn~snpI~~fSsG-ndvVtLdkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      ..++++||+|.|.+..+ .|+|..... ...+.  +...  ....| ...++++++|.|+|+|..  |  .||+-.|.|.
T Consensus        35 ~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~--f~s~--~~~~~~~~~~tf~~~G~y~y~C~~--H--~~M~G~I~Ve  106 (106)
T d1id2a_          35 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDA--FRGE--MMTKDQAYAITFNEAGSYDYFCTP--H--PFMRGKVIVE  106 (106)
T ss_dssp             EEEECTTCEEEEEECSSSCBCCEECTTTSSSSC--EECC--CBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCceeEEeccccCCccc--cccc--ccCCCceEEEecCCCeEEEEEccC--C--CCCEEEEEEC
Confidence            57899999999988653 599865321 11111  1111  12223 247899999999999998  5  5999999984

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=97.71  E-value=5.9e-05  Score=61.86  Aligned_cols=92  Identities=10%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             eEEEecCCCCCccCCCCCcccccCCCeEecCc-eeeeeeec-CC-------ceEEEecccCCCC----------------
Q 016941           24 LKFNVGGKHGWVTNPGENYNKWSGRNRFLVND-TLFFKYKK-GS-------DSVLLVNKDDYDS----------------   78 (380)
Q Consensus        24 ~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGD-TLVFkY~a-G~-------HSVveVnK~dYds----------------   78 (380)
                      .++.|..+++-.|.+        +..+++.|| +|.|.|.+ +.       |+++.+...+++.                
T Consensus         3 ~ei~i~~~d~m~fd~--------~~i~V~aG~e~v~i~~~N~g~lph~~~~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~~   74 (129)
T d1cuoa_           3 CETTVTSGDTMTYST--------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVT   74 (129)
T ss_dssp             CEEEEEECSSSCCSC--------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSC
T ss_pred             eEEEEecCCcccCcc--------cEEEEeCCCEEEEEEEEeCCcCCceeEEeeeeecccccHHHHHHHHHhhcccccCCC
Confidence            455666555666644        356888996 56666644 22       8876654332211                


Q ss_pred             CCCCCCc---cccCCCCc---EEEe---ccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           79 CNTKKPL---LKLDSGDS---EFKL---DRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        79 Cn~snpI---~~fSsGnd---vVtL---dkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      =+..+.+   .....|..   .|+.   +++|.|.|+|++++| ..||+-.|.|.
T Consensus        75 p~~~~via~t~~l~pGe~~~i~f~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~  128 (129)
T d1cuoa_          75 PGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGH-FSMMRGTLKLE  128 (129)
T ss_dssp             TTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTC-TTTSEEEEEEE
T ss_pred             CCchhhhhhccccCccccceEEEEccccCCCceEEEEeCCCCc-ccCcEEEEEEe
Confidence            1111111   12234442   3443   468999999999999 58999999885

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=97.70  E-value=6.8e-05  Score=61.38  Aligned_cols=93  Identities=11%  Similarity=0.092  Sum_probs=57.8

Q ss_pred             eEEEecCCCCCccCCCCCcccccCCCeE-ecCceeeeeeecCC--------ceEEEecccCC----------------CC
Q 016941           24 LKFNVGGKHGWVTNPGENYNKWSGRNRF-LVNDTLFFKYKKGS--------DSVLLVNKDDY----------------DS   78 (380)
Q Consensus        24 ~tyvVGGs~GWt~~P~~nYt~WAS~kTF-~VGDTLVFkY~aG~--------HSVveVnK~dY----------------ds   78 (380)
                      .+++|..+++-.|.+        +++++ +.|.+|+|.|.+..        |+++.++..++                ..
T Consensus         3 ~ei~i~~~d~mkf~~--------~~i~V~k~G~~V~l~~~N~g~l~h~~m~hn~vi~~~~~~~~~~~~~~~~~~~~~~~~   74 (129)
T d2ccwa1           3 CEATVESNDAMQYNV--------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVK   74 (129)
T ss_dssp             SEEEEEECTTSCBSC--------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSC
T ss_pred             eEEEEecCCcccCcc--------ceEEEecCCCEEEEEEEcCCcCchheeeccccccCcccHHHHHHHHHHhhhccccCC
Confidence            356666666666643        23454 46999999887642        88877653322                11


Q ss_pred             CCCCCCc---cccCCCCc---EEEe---ccccceEEEeCCCCcCCCCCeEEEEecC
Q 016941           79 CNTKKPL---LKLDSGDS---EFKL---DRSGPFYFISGNHDHCQKGQKLIVVVLH  125 (380)
Q Consensus        79 Cn~snpI---~~fSsGnd---vVtL---dkpG~yYFICGV~gHCq~GMKLaInV~a  125 (380)
                      =+....+   .....|.+   +|+.   +++|.|.|+|++++| ..||+-.|+|.+
T Consensus        75 ~~~~~via~t~~l~pget~~i~f~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~~  129 (129)
T d2ccwa1          75 AGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGH-WAMMKGTLKLGS  129 (129)
T ss_dssp             TTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTG-GGTSEEEEEECC
T ss_pred             CccccccccccccCCCceEEEEEEecccCCCccEEEEeCCCCh-hhCcEEEEEEcC
Confidence            1111111   12234443   4555   468999999999999 689999999863

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=97.42  E-value=0.00012  Score=59.55  Aligned_cols=76  Identities=18%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             CeEecCceeeeeeecC----CceEEEecc-cCCCCCCCCCC-------ccccCCCC---cEEEe-ccccceEEEeCCCCc
Q 016941           49 NRFLVNDTLFFKYKKG----SDSVLLVNK-DDYDSCNTKKP-------LLKLDSGD---SEFKL-DRSGPFYFISGNHDH  112 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG----~HSVveVnK-~dYdsCn~snp-------I~~fSsGn---dvVtL-dkpG~yYFICGV~gH  112 (380)
                      .+++.||+|+|.+.+.    .|+...... ..+..=+....       ......|.   ..|++ +++|+|||.|...+|
T Consensus        62 i~v~~Gd~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~~H  141 (153)
T d1e30a_          62 LEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGH  141 (153)
T ss_dssp             EEECTTCEEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCSTTT
T ss_pred             EEEeCCCEEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCchhH
Confidence            5789999999999653    376655422 11211111100       00112232   24553 568999999999999


Q ss_pred             CCCCCeEEEEec
Q 016941          113 CQKGQKLIVVVL  124 (380)
Q Consensus       113 Cq~GMKLaInV~  124 (380)
                      =+.||.-.|.|.
T Consensus       142 ~~~GM~G~iiVe  153 (153)
T d1e30a_         142 AATGQFGKIVVK  153 (153)
T ss_dssp             TTTTCEEEEEEC
T ss_pred             HHCCCEEEEEEC
Confidence            999999998874

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.20  E-value=0.00012  Score=57.81  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             CCeEecCceeeeeeecC---CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCC-CCeEE
Q 016941           48 RNRFLVNDTLFFKYKKG---SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQK-GQKLI  120 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG---~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~-GMKLa  120 (380)
                      ..+++.||.|+|.+.+.   .|++..   .+|..   .   .....|.   ..|+++++|.|+|+|..  ||.. ||+..
T Consensus        39 ~i~v~~Gd~V~~~~~n~d~~~H~~~i---~~~~~---~---~~~~pG~t~~~~f~~~~~G~y~y~C~~--~~~~~~M~G~  107 (112)
T d1ibya_          39 TLVVKKGDAVKVVVENKSPISEGFSI---DAFGV---Q---EVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT  107 (112)
T ss_dssp             EEEEETTCEEEEEEEECSSSCEEEEE---GGGTE---E---EEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred             EEEEeCCCEEEEEEEeCCCCceeeee---ccccc---c---cccCCcceEEEEEEeccceEEEEECcc--cChhhcCeEE
Confidence            57899999999988542   377654   22211   0   1112332   37888999999999998  8974 69999


Q ss_pred             EEecC
Q 016941          121 VVVLH  125 (380)
Q Consensus       121 InV~a  125 (380)
                      |.|..
T Consensus       108 i~V~e  112 (112)
T d1ibya_         108 LNVVE  112 (112)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98863

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.87  E-value=0.0011  Score=54.08  Aligned_cols=26  Identities=12%  Similarity=0.106  Sum_probs=23.6

Q ss_pred             ccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           98 DRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        98 dkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +++|.|-|+|..++|= .||+-.|+|.
T Consensus       103 ~~~G~Y~f~Ct~PGH~-~gM~G~l~Ve  128 (128)
T d1jzga_         103 KEGEQYMFFCTFPGHS-ALMKGTLTLK  128 (128)
T ss_dssp             CTTCCEEEECCSTTGG-GTSEEEEEEC
T ss_pred             CCCceEEEEECCCCcc-cccEEEEEEC
Confidence            5789999999999998 8999999883

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=96.43  E-value=0.0033  Score=51.23  Aligned_cols=26  Identities=15%  Similarity=0.072  Sum_probs=23.1

Q ss_pred             ccccceEEEeCCCCcCCCCCeEEEEec
Q 016941           98 DRSGPFYFISGNHDHCQKGQKLIVVVL  124 (380)
Q Consensus        98 dkpG~yYFICGV~gHCq~GMKLaInV~  124 (380)
                      +++|.|-|+|++++|= .|||-.|.|.
T Consensus       103 ~~~G~Y~f~Ct~PGH~-~~M~G~l~V~  128 (128)
T d1nwpa_         103 AAGEKYGFFCSFPGHI-SMMKGTVTLK  128 (128)
T ss_dssp             CTTSCEEEECCSTTCG-GGSEEEEEEC
T ss_pred             CCCceEEEEECCCCcc-cCceEEEEEC
Confidence            4679999999999997 8999999883

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=96.31  E-value=0.0038  Score=50.47  Aligned_cols=66  Identities=14%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             CCeEecCceeeeeeecC--CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCC---CCcCCCCCeE
Q 016941           48 RNRFLVNDTLFFKYKKG--SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGN---HDHCQKGQKL  119 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG--~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV---~gHCq~GMKL  119 (380)
                      ..++..||.++|+..+.  .|+...   .+|..-     + ....|.   ..|+.+++|.|+|+|..   .+|  .+|+.
T Consensus        48 ~l~vp~G~~V~~~lts~DV~H~f~i---p~~~v~-----~-d~~PG~~~~~~~~~~~~G~y~~~C~~~CG~~H--~~M~g  116 (122)
T d2cuaa_          48 PIEVPQGAEIVFKITSPDVIHGFHV---EGTNIN-----V-EVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMFG  116 (122)
T ss_dssp             SEEEETTSEEEEEEEBSSSCEEEEE---TTSSCE-----E-EECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCEE
T ss_pred             EEEEeCCCEEEEEEEcCCccceeEe---cCCCee-----E-EEecCceEEEEEEeccceeEEEEehhccCCCc--ccCeE
Confidence            57899999999998763  266543   122210     0 112233   35788999999999997   244  47999


Q ss_pred             EEEec
Q 016941          120 IVVVL  124 (380)
Q Consensus       120 aInV~  124 (380)
                      .|.|.
T Consensus       117 ~i~V~  121 (122)
T d2cuaa_         117 TIVVK  121 (122)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98886

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.18  E-value=0.004  Score=50.85  Aligned_cols=68  Identities=7%  Similarity=0.132  Sum_probs=44.6

Q ss_pred             CCeEecCceeeeeeecC------CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCC---C
Q 016941           48 RNRFLVNDTLFFKYKKG------SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQ---K  115 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG------~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq---~  115 (380)
                      ..+++.||.+.|+..+.      .|+...   .+|..      .....-|.   ..|+.+++|.|+|+|+.  .|-   .
T Consensus        52 ~i~V~~Gd~V~~~vtn~~~s~Dv~H~f~i---p~~~v------~~~~~PG~t~~~~f~~~~~G~y~~~C~~--~cg~~H~  120 (131)
T d1qnia1          52 DFKVKEGDEVTVYITNLDMVEDVTHGFCM---VNHGV------SMEISPQQTASVTFTAGKPGVYWYYCNW--FCHALHM  120 (131)
T ss_dssp             EEEEETTCEEEEEEEECCCSTTCCEEEEE---TTTTE------EEEECTTCEEEEEEECCSSEEEEEECCS--CCSTTGG
T ss_pred             eEEecCCCEEEEEEEccCCCCcceEEEEE---eccCc------ccccCCCceEEEEEEcCCCEEEEEECcc--ccCcchh
Confidence            46899999999998642      244433   12210      01112333   36889999999999987  443   4


Q ss_pred             CCeEEEEecCC
Q 016941          116 GQKLIVVVLHE  126 (380)
Q Consensus       116 GMKLaInV~as  126 (380)
                      +|+..|.|..+
T Consensus       121 ~M~g~i~Vepa  131 (131)
T d1qnia1         121 EMVGRMLVEAA  131 (131)
T ss_dssp             GCEEEEEEECC
T ss_pred             cCeeEEEEEeC
Confidence            79999998753

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.12  E-value=0.0041  Score=50.65  Aligned_cols=69  Identities=9%  Similarity=0.107  Sum_probs=43.9

Q ss_pred             CCeEecCceeeeeeecCC------ceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCC-CCC
Q 016941           48 RNRFLVNDTLFFKYKKGS------DSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQ-KGQ  117 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~------HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq-~GM  117 (380)
                      ..+++.||.+.|+..+..      |....   .+|.   .  . .....|.   ..|+.+++|.|+|+|....|=. .||
T Consensus        53 ~i~V~~Gd~V~~~ltN~d~~~~v~H~~~i---~~~~---~--~-~~~~PG~~~~~~F~a~~~G~y~~~C~~~cg~~H~~M  123 (132)
T d1fwxa1          53 SFTVKEGDEVTVIVTNLDEIDDLTHGFTM---GNYG---V--A-MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEM  123 (132)
T ss_dssp             EEEEETTCEEEEEEEECCCSTTCCEEEEE---TTTT---E--E-EEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTTC
T ss_pred             EEEEcCCCEEEEEEEcCCCCccceEeech---hhhc---c--c-cccCCCEEEEEEEeCCCCeEEEEECccccCcchhcC
Confidence            357788999999997522      43322   1221   0  0 1112343   3688999999999998743332 589


Q ss_pred             eEEEEecC
Q 016941          118 KLIVVVLH  125 (380)
Q Consensus       118 KLaInV~a  125 (380)
                      +..|.|..
T Consensus       124 ~G~iiVeP  131 (132)
T d1fwxa1         124 RGRMLVEP  131 (132)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEc
Confidence            99998853

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-a5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0061  Score=51.26  Aligned_cols=78  Identities=23%  Similarity=0.311  Sum_probs=49.3

Q ss_pred             CeEecCceeeeeeecC----------CceEEEecccCCCCCCCCCCc-ccc--C-----CCCcE--EEec----------
Q 016941           49 NRFLVNDTLFFKYKKG----------SDSVLLVNKDDYDSCNTKKPL-LKL--D-----SGDSE--FKLD----------   98 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG----------~HSVveVnK~dYdsCn~snpI-~~f--S-----sGndv--VtLd----------   98 (380)
                      +.+++||.|-+.....          ...|++|++++|+.|+....- ..+  +     +|...  +++-          
T Consensus        23 i~V~i~D~ldIiCP~y~~~~~~~~~E~y~lY~Vs~e~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~fsP~~~G~E  102 (138)
T d1shxa1          23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEcCCCCCCCCCceEEEEEEEcCCCCCCee
Confidence            4688999998876431          255788999999999976531 111  1     22222  2211          


Q ss_pred             -ccc-ceEEEeCC---CCcCCCCCeEEEEecCCC
Q 016941           99 -RSG-PFYFISGN---HDHCQKGQKLIVVVLHER  127 (380)
Q Consensus        99 -kpG-~yYFICGV---~gHCq~GMKLaInV~ass  127 (380)
                       ++| .||||+.-   .++|. .|||.|.|-...
T Consensus       103 F~pG~~YY~ISTs~g~~~~~~-~mrLkv~V~p~~  135 (138)
T d1shxa1         103 FRPGREYFYISSAIPDNGRRS-CLKLKVFVRPTN  135 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSC-CCEEEEEECCTT
T ss_pred             ecCCCEEEEEEeeCCCCCCcc-ceEeEEEEeCCC
Confidence             245 78899743   34554 499999997443

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-b2 ectodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0037  Score=52.70  Aligned_cols=76  Identities=28%  Similarity=0.387  Sum_probs=48.6

Q ss_pred             CeEecCceeeeeeecC---------CceEEEecccCCCCCCCCCC-cccc--CCC--CcEE--------------Eeccc
Q 016941           49 NRFLVNDTLFFKYKKG---------SDSVLLVNKDDYDSCNTKKP-LLKL--DSG--DSEF--------------KLDRS  100 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG---------~HSVveVnK~dYdsCn~snp-I~~f--SsG--ndvV--------------tLdkp  100 (380)
                      ..+++||.|-+.....         ...+++|++++|+.|+.... ...+  +.-  ...|              .+ ++
T Consensus        24 i~V~i~D~ldIiCP~y~~~~~~~~E~~~lY~V~~e~y~~C~~~~~~~~~~~C~~P~~~~kft~kFQ~fsP~~lG~EF-~p  102 (141)
T d1ikop_          24 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEF-QK  102 (141)
T ss_dssp             ECCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCC-CT
T ss_pred             EEeccCCEEEEECCCCCCCCCCcceEEEEEEECHHHhCcccCCCCCcEEEEeCCCCCCeEEEEEEeecCCCCCCeee-cC
Confidence            3567889998876432         24578899999999998543 2111  211  1111              12 24


Q ss_pred             c-ceEEEeCCCC-----------cCC-CCCeEEEEecC
Q 016941          101 G-PFYFISGNHD-----------HCQ-KGQKLIVVVLH  125 (380)
Q Consensus       101 G-~yYFICGV~g-----------HCq-~GMKLaInV~a  125 (380)
                      | .||||+.-.+           -|. ..|||.|.|..
T Consensus       103 G~~YY~IstS~g~~~gl~~~~gg~C~t~~MKl~i~V~~  140 (141)
T d1ikop_         103 NKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQ  140 (141)
T ss_dssp             TEEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             CCeEEEEEcCCCCCCccccccCCccCCCccEEEEEeCC
Confidence            5 7888886543           396 48999999964

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=95.42  E-value=0.012  Score=48.32  Aligned_cols=76  Identities=14%  Similarity=0.154  Sum_probs=46.4

Q ss_pred             CeEecCceeeeeeecCC-----ceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCC---cCCCCC
Q 016941           49 NRFLVNDTLFFKYKKGS-----DSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHD---HCQKGQ  117 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG~-----HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~g---HCq~GM  117 (380)
                      .+++.||+|++++.+..     |.+..-...+-+  .. .......-|.   .+|+++++|+|||.|....   |=..||
T Consensus        60 i~v~~Gd~v~v~~~N~~~~~~~H~~~~h~~~~~~--~~-~~~~~i~PG~t~~y~f~a~~~Gt~~YH~H~~~~~~h~~~Gm  136 (151)
T d1kbva1          60 IRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQG--GG-AAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGM  136 (151)
T ss_dssp             EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG--GG-TTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred             EEEECCCEEEEEEEcCCCCceeeeccccccccCC--CC-cceeeeCCCCEEEEEEeCCCCeEEEEECCCCChHHHHhCCC
Confidence            58899999999997621     444331100000  00 0000012233   3688899999999998654   677899


Q ss_pred             eEEEEecCCC
Q 016941          118 KLIVVVLHER  127 (380)
Q Consensus       118 KLaInV~ass  127 (380)
                      --.|.|...+
T Consensus       137 ~G~liV~p~~  146 (151)
T d1kbva1         137 YGLILVEPKE  146 (151)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEECCC
Confidence            8888886544

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=95.04  E-value=0.046  Score=43.49  Aligned_cols=79  Identities=11%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             CCeEecCceeeeeeecCC----ceEEEecccCCCCCCCCCCcc-----ccCCCC---cEEEeccccceEEEeCCCCcCCC
Q 016941           48 RNRFLVNDTLFFKYKKGS----DSVLLVNKDDYDSCNTKKPLL-----KLDSGD---SEFKLDRSGPFYFISGNHDHCQK  115 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~----HSVveVnK~dYdsCn~snpI~-----~fSsGn---dvVtLdkpG~yYFICGV~gHCq~  115 (380)
                      .++++.||+|++++.+..    +++..-. -.+......+...     ....|.   ..|.++++|+|||.|-+..|=..
T Consensus        35 ~i~v~~GD~v~i~l~N~l~~~~~~iH~Hg-~~~~~~~~~~~~~~~~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~~~h~~~  113 (129)
T d1aoza1          35 TIRANAGDSVVVELTNKLHTEGVVIHWHG-ILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSA  113 (129)
T ss_dssp             CEEEETTCEEEEEEEECCSSCCBCEEEET-CCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGGG
T ss_pred             eEEEECCcEEEEEEEeCCCCCCeeeeecc-ceeeccCccccccccccceECCCCEEEEEEECCCCCceEEecCCHHHHhC
Confidence            357999999999987642    2221110 0000111000000     012333   36888999999999999999999


Q ss_pred             CCeEEEEecCCC
Q 016941          116 GQKLIVVVLHER  127 (380)
Q Consensus       116 GMKLaInV~ass  127 (380)
                      ||--.|.|....
T Consensus       114 Gm~G~~iV~~~~  125 (129)
T d1aoza1         114 GLYGSLIVDPPQ  125 (129)
T ss_dssp             TCEEEEEEECCT
T ss_pred             CCEEEEEEcCCC
Confidence            999888886554

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=94.05  E-value=0.033  Score=46.28  Aligned_cols=76  Identities=20%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             CeEecCceeeeeeecCC-----ceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCC----cCCCC
Q 016941           49 NRFLVNDTLFFKYKKGS-----DSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHD----HCQKG  116 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG~-----HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~g----HCq~G  116 (380)
                      ++++.||+|++++.+..     |++..=...+...   .........|.   ..|+++++|+|||.|-..+    |=..|
T Consensus        67 I~v~~Gd~v~v~~~N~~~~~h~h~ih~hg~~~~~~---g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~~~~~~~q~~~G  143 (159)
T d1oe2a1          67 LVVHEGDYVQLTLVNPATNAMPHNVEFHGATGALG---GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG  143 (159)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred             EEEECCcEEEEEEECCCccccccceeeccccCCCC---CcccccCCCCCeEEEEEEcCCCceEEEEeCCCCCchhHHhCC
Confidence            67899999999998742     4553311000000   00001112333   3788999999999997533    55689


Q ss_pred             CeEEEEecCCC
Q 016941          117 QKLIVVVLHER  127 (380)
Q Consensus       117 MKLaInV~ass  127 (380)
                      |--.|.|....
T Consensus       144 l~G~liV~p~e  154 (159)
T d1oe2a1         144 MSGTLMVLPRD  154 (159)
T ss_dssp             CEEEEEEECTT
T ss_pred             CEEEEEEECCC
Confidence            98777775443

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=93.23  E-value=0.11  Score=41.64  Aligned_cols=78  Identities=15%  Similarity=0.116  Sum_probs=47.7

Q ss_pred             CCeEecCceeeeeeecCC--------ceEEE----ecc-cCCCCCCCCCCccccCCCC---cEEEec-cccceEEEeCCC
Q 016941           48 RNRFLVNDTLFFKYKKGS--------DSVLL----VNK-DDYDSCNTKKPLLKLDSGD---SEFKLD-RSGPFYFISGNH  110 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~aG~--------HSVve----VnK-~dYdsCn~snpI~~fSsGn---dvVtLd-kpG~yYFICGV~  110 (380)
                      .++++.||+|++++.+..        ++|..    +.. .+++.+....- .-...|.   ..|++. ++|+|||-|-+.
T Consensus        35 tI~~~~GD~v~v~~~N~~~~~~~~~~~~iH~HG~~~~~~~~~d~~~~~s~-~~i~PG~s~~Y~~~~~~~~Gt~wYH~H~~  113 (130)
T d1gyca1          35 LITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQ-CPIASGHSFLYDFHVPDQAGTFWYHSHLS  113 (130)
T ss_dssp             CEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTB-CCBCTTEEEEEEEECSSCCEEEEEEECST
T ss_pred             eEEEECCeEEEEEEEecCCCcccCCceeEEeccccccccCCCCCcccccc-CCCCCCCeEEEEEECCCCCceeEEecCCH
Confidence            458999999999997642        33432    111 11111111000 0012233   356664 699999999999


Q ss_pred             CcCCCCCeEEEEecCC
Q 016941          111 DHCQKGQKLIVVVLHE  126 (380)
Q Consensus       111 gHCq~GMKLaInV~as  126 (380)
                      .|=..||.-.|.|...
T Consensus       114 ~~~~~Gl~G~liV~~p  129 (130)
T d1gyca1         114 TQYCDGLRGPFVVYDP  129 (130)
T ss_dssp             TGGGGTCEEEEEEECT
T ss_pred             HHHhCCCEEEEEEeCC
Confidence            9999999998888654

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=92.06  E-value=0.039  Score=45.66  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             CeEecCceeeeeeecCC-----ceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCC----CcCCCC
Q 016941           49 NRFLVNDTLFFKYKKGS-----DSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNH----DHCQKG  116 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG~-----HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~----gHCq~G  116 (380)
                      ++++.||+|++++.+..     |.+..-...+-+ ..  ........|.   ..|+++++|+|||-|-..    .|=..|
T Consensus        66 I~v~~GD~V~i~l~N~~~~~~~Hg~~~h~~~~~~-~~--~~~~~i~PGet~ty~f~a~~pGt~~YH~H~~~~~~~h~~~G  142 (157)
T d2bw4a1          66 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL-GG--GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG  142 (157)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG-GG--GGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred             EEEECCcEEEEEEEeCCCCcceEeeeecccCCCc-CC--cceeeECcCCEEeEEEECCCCccceEEECCCCchHHHHhCC
Confidence            57899999999998732     444331111000 00  0000112333   378899999999999754    356789


Q ss_pred             CeEEEEecCC
Q 016941          117 QKLIVVVLHE  126 (380)
Q Consensus       117 MKLaInV~as  126 (380)
                      |--.|.|...
T Consensus       143 l~G~~iV~p~  152 (157)
T d2bw4a1         143 MNGAIMVLPR  152 (157)
T ss_dssp             CEEEEEEECT
T ss_pred             CEEEEEEeCC
Confidence            9888877543

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.63  E-value=0.11  Score=42.67  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             CeEecCceeeeeeecCC-----ceEEE-e-cccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCC-----cC
Q 016941           49 NRFLVNDTLFFKYKKGS-----DSVLL-V-NKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHD-----HC  113 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG~-----HSVve-V-nK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~g-----HC  113 (380)
                      .+++.||+|++++.+..     |..-. . ...+....     +....-|.   .+|.++++|+|||-|-+.+     |=
T Consensus        64 i~v~~Gd~v~i~~~N~~~~~~~H~~~~h~~~~~~~~~~-----~~~i~PG~t~ty~f~a~~~Gt~~YH~H~~~~~~~~h~  138 (153)
T d1mzya1          64 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGG-----LTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHV  138 (153)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGG-----GCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHH
T ss_pred             EEEeCCCEEEEEEEcCCCCceEccCccccCCcCCCCCc-----cccccCCCEEEEEEEcCCCceEEEEeCCcccccHhHH
Confidence            47999999999997631     44332 1 11111110     00112333   3788999999999998654     56


Q ss_pred             CCCCeEEEEecCC
Q 016941          114 QKGQKLIVVVLHE  126 (380)
Q Consensus       114 q~GMKLaInV~as  126 (380)
                      ..||--.|.|...
T Consensus       139 ~~Gm~G~~iV~P~  151 (153)
T d1mzya1         139 VSGMAGCIMVLPR  151 (153)
T ss_dssp             HTTCEEEEEEECT
T ss_pred             hCCCEEEEEEecC
Confidence            7899878777543

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=90.77  E-value=0.2  Score=41.26  Aligned_cols=34  Identities=9%  Similarity=0.110  Sum_probs=29.9

Q ss_pred             EEEeccccceEEEeCCCCcCCCCCeEEEEecCCC
Q 016941           94 EFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER  127 (380)
Q Consensus        94 vVtLdkpG~yYFICGV~gHCq~GMKLaInV~ass  127 (380)
                      .|..+++|++||-|-+..|=..||--.|.|....
T Consensus       126 ~f~~~~~Gt~wYH~H~~~q~~~Gl~G~~iV~~p~  159 (162)
T d2q9oa1         126 RWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPA  159 (162)
T ss_dssp             EEECCSCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred             eecCCCCEEEEeecCCHHHHhCCCEEEEEECCCC
Confidence            6788899999999999999999999999887544

>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=89.13  E-value=0.39  Score=39.02  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             EEEeccccceEEEeCCC-CcCCCCCeEEEEecCCC
Q 016941           94 EFKLDRSGPFYFISGNH-DHCQKGQKLIVVVLHER  127 (380)
Q Consensus        94 vVtLdkpG~yYFICGV~-gHCq~GMKLaInV~ass  127 (380)
                      .|+.+++|+|+|.|=.- .|+++||.-.|.|....
T Consensus       112 ~f~a~~PG~y~~h~H~l~~~~~~G~~g~~~V~~~~  146 (151)
T d1kbva2         112 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE  146 (151)
T ss_dssp             EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred             eeecCCCceEEEECCcHHHHHhccCeEEEEEcCCC
Confidence            67899999999999864 57999999999997653

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=86.82  E-value=0.6  Score=37.44  Aligned_cols=77  Identities=16%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             CeEecCceeeeeeecCC--------ceEEEecccCCCCCCCCCCc-----cccCCCCc---EEEe-ccccceEEEeCCCC
Q 016941           49 NRFLVNDTLFFKYKKGS--------DSVLLVNKDDYDSCNTKKPL-----LKLDSGDS---EFKL-DRSGPFYFISGNHD  111 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG~--------HSVveVnK~dYdsCn~snpI-----~~fSsGnd---vVtL-dkpG~yYFICGV~g  111 (380)
                      .+++.||+|++++.+..        +++..=- -.++.+...+..     .-...|..   .|++ +.+|+|||-|-...
T Consensus        36 I~v~~GD~v~v~l~N~l~~~~~~~~tsiH~HG-l~~~~~~~~dgv~g~~~~~I~PG~~~~y~~~~~~~~Gt~wYH~H~~~  114 (131)
T d1hfua1          36 IRGGKNDNFELNVVNDLDNPTMLRPTSIHWHG-LFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGT  114 (131)
T ss_dssp             EEEETTCCEEEEEEECCCCTTSCCSBCEEEET-CCCTTCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEECSTT
T ss_pred             EEEECCCEEEEEEEECCCCccccccceEEeCC-cccCCCCCCCCCcccccceECCCCeEEEEEeCCCCcceEEEecCCHH
Confidence            58999999999987742        2332100 001111111110     01123432   4553 46899999999999


Q ss_pred             cCCCCCeEEEEecCC
Q 016941          112 HCQKGQKLIVVVLHE  126 (380)
Q Consensus       112 HCq~GMKLaInV~as  126 (380)
                      |=..||--.|.|...
T Consensus       115 q~~~Gl~G~liV~~~  129 (131)
T d1hfua1         115 QYCDGLRGPMVIYDD  129 (131)
T ss_dssp             GGGGTCEEEEEEECT
T ss_pred             HHhCCCEEEEEEcCC
Confidence            999999988888653

>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.62  Score=36.69  Aligned_cols=75  Identities=11%  Similarity=0.136  Sum_probs=48.1

Q ss_pred             CCeEecCceeeeeeec-C----CceEEEecccCCCCC-CCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCCCCe
Q 016941           48 RNRFLVNDTLFFKYKK-G----SDSVLLVNKDDYDSC-NTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQKGQK  118 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~a-G----~HSVveVnK~dYdsC-n~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~GMK  118 (380)
                      ..+++.||.+++...+ +    .|.+..-. ..|+.= ...+.+ ....|.   ..|+.+.+|.++|-|-+..|=..||.
T Consensus        61 ~l~~~~gd~v~~~l~n~g~~~~~h~~H~hg-~~~~~~~~~~dt~-~i~pg~~~~v~f~~~~pG~w~~HCH~~~H~~~GM~  138 (146)
T d1kcwa2          61 GLSMCAEDRVKWYLFGMGNEVDVHAAFFHG-QALTNKNYRIDTI-NLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQ  138 (146)
T ss_dssp             CCEEETTEEEEEEEECCCSTTCCEEEEETT-SCCCCSSSCCSEE-EECTTCEEEEEEEECSCEEEEEEECCHHHHHTCCE
T ss_pred             cceEecCCeEEEEEEEcCCCCcccceEeee-eeeeccCCCcceE-EecCCCEEEEEEEcCCCeeEEEEcCCHHHHhcCCe
Confidence            4689999999887644 2    25554421 111110 001111 122333   26788999999999999999999999


Q ss_pred             EEEEec
Q 016941          119 LIVVVL  124 (380)
Q Consensus       119 LaInV~  124 (380)
                      ..++|.
T Consensus       139 ~~~~V~  144 (146)
T d1kcwa2         139 AFFQVQ  144 (146)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

Probab=83.66  E-value=2  Score=34.44  Aligned_cols=76  Identities=11%  Similarity=0.143  Sum_probs=44.1

Q ss_pred             CeEecCceeeeeeecC---CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccc-cceEEEeCCCC----cCCCCC
Q 016941           49 NRFLVNDTLFFKYKKG---SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRS-GPFYFISGNHD----HCQKGQ  117 (380)
Q Consensus        49 kTF~VGDTLVFkY~aG---~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkp-G~yYFICGV~g----HCq~GM  117 (380)
                      ++++.||.|++++.+.   .|++..=-. .+.......+......|.   ..|.++.+ |+|||.|-...    |=..||
T Consensus        48 i~~~~Gd~v~v~~~N~l~~~~siH~HG~-~~~~~~dG~~~~~i~pg~~~~y~~~~~~~aGt~wyH~H~~~~~~~~~~~Gl  126 (140)
T d1kv7a1          48 VKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGL  126 (140)
T ss_dssp             EEEETTCEEEEEEEECSSSCBCCEEETC-CCCGGGSCCTTCCBCTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHTTC
T ss_pred             EEEECCCEEEEEEEeCccccccEeeeee-ecCCccCCCccceEccCCceeEEEEEecCCeeEEEEECCCCChHHHHhCCC
Confidence            5789999999999775   344433100 011111111111123343   25777775 99999997642    444899


Q ss_pred             eEEEEecC
Q 016941          118 KLIVVVLH  125 (380)
Q Consensus       118 KLaInV~a  125 (380)
                      --.|.|..
T Consensus       127 ~G~liV~~  134 (140)
T d1kv7a1         127 AGLVVIED  134 (140)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEECC
Confidence            88887754

>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.61  E-value=0.44  Score=38.02  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=48.0

Q ss_pred             CCeEecCceeeeeeec-C----CceEE------EecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcC
Q 016941           48 RNRFLVNDTLFFKYKK-G----SDSVL------LVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHC  113 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~a-G----~HSVv------eVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHC  113 (380)
                      ..+++.||.+++...+ +    .|.+.      +++...-+.|..       ..|.   ..|+.+.+|+++|-|-+..|=
T Consensus        60 ~l~v~~Gd~v~~~l~n~g~~~~~h~iH~hG~~f~~~~~~~dt~~i-------~pg~~~t~~~~a~~pG~w~~HCH~~~H~  132 (145)
T d2j5wa2          60 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANL-------FPQTSLTLHMWPDTEGTFNVECLTTDHY  132 (145)
T ss_dssp             CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEE-------CTTCEEEEEECCCSCEEEEEEECSHHHH
T ss_pred             CeEEEcCCeEEEEEEecCCCCcccceEecccEEEecccCccceEE-------CCCCEEEEEEEcCCCEeEEEEcCCHHHH
Confidence            4689999999987654 2    15543      332222122221       2222   257788899999999999999


Q ss_pred             CCCCeEEEEec
Q 016941          114 QKGQKLIVVVL  124 (380)
Q Consensus       114 q~GMKLaInV~  124 (380)
                      ..||...|+|.
T Consensus       133 ~~GM~~~~~V~  143 (145)
T d2j5wa2         133 TGGMKQKYTVN  143 (145)
T ss_dssp             HTTCEEEEEEE
T ss_pred             hCCCeEEEEEe
Confidence            99999999885

>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.29  E-value=0.89  Score=35.89  Aligned_cols=72  Identities=14%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             CCeEecCceeeeeeec-C----CceEEE------eccc-CCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCc
Q 016941           48 RNRFLVNDTLFFKYKK-G----SDSVLL------VNKD-DYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDH  112 (380)
Q Consensus        48 ~kTF~VGDTLVFkY~a-G----~HSVve------VnK~-dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gH  112 (380)
                      ..++++||.+++...+ +    .|.+..      ++.+ .+.    .+-+ ....|.   ..|+.+++|+++|-|-+..|
T Consensus        53 ~~~v~~gd~v~~~l~n~g~~~~~h~iH~HG~~f~~~~~~~~~----~dt~-~i~pg~~~t~~~~~~~pG~w~~HcH~~~H  127 (139)
T d1sddb2          53 GLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQHQ----LGVW-PLLPGSFKTLEMKASKPGWWLLDTEVGEI  127 (139)
T ss_dssp             CCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSCEE----ESSE-EECTTEEEEEEEECCSSEEEEEECCCHHH
T ss_pred             ccccccCCcEEEEEEecCCCCCcccEEEcceEEEeccCCCCc----CCeE-EECCCCEEEEEEecCCCEeEEEEeCCHHH
Confidence            4689999999888754 2    255532      2111 000    0001 112232   25778999999999999999


Q ss_pred             CCCCCeEEEEec
Q 016941          113 CQKGQKLIVVVL  124 (380)
Q Consensus       113 Cq~GMKLaInV~  124 (380)
                      =..||...+.|+
T Consensus       128 ~~~GM~~~~~V~  139 (139)
T d1sddb2         128 QRAGMQTPFLIV  139 (139)
T ss_dssp             HTTTCEEEEEEE
T ss_pred             HhccCcEEEEEC
Confidence            999998888774