Citrus Sinensis ID: 016971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MDWNLKPAWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNEHHRLNLPDERNLFLRSPSSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHDRSTTQDSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHcccccccccccccEEEEccEEEEEcccccccEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEccHHHHHHHHHHHHccHHHHcHccHHHHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mdwnlkpawdftefeqeaipnvdavdesssrtkgnfsvdlklgqvnssaedslnkckepvaskmespspsgsfkraraanngsqtasclvdgcdsdlsncrdyhrrhkvcelhsktpqvlicgqkqrfcqqcsrfhcleefdegkRSCRkrldghnrrrrkpqpdplsrtgtflsnyqgasllpfssshmypsatvvkptwtgvvnteadarrynehhrlnlpdernlflrspsssyktgkqftflqgdnptfnsqtsseasvsqpllgtanlsdrsgashnvfhdrsttqdsdcalsllsspttqtsgislsqmmppssmplvrslgtslhnhsvepmesvlvssdqddnvhcpgvfhlgydgsaasdtpqtipfhwe
Flexible Loop (DISEMBL)
MDWNLKPAWDFTEFEQEAipnvdavdesssrtkgnfsvdlklgqvnssaedslNKCKEpvaskmespspsgsfKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHcleefdegkrscrkrldghnrrrrkpqpdplsrtgTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADArrynehhrlnlpdernlflRSPSSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHDRSTTQDSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHLGydgsaasdtpqtipfhwe
Low Complexity Region (SEG)
MDWNLKPAWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNEHHRLNLPDERNLFLRSPSSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHDRSTTQDSDCAlsllssPTTQTSGISLsqmmppssmpLVRSLGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE
Disordered region (IsUnstruct)
*******AWDFTE*************************************************************************SCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEF********************************LSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRY*****************************************************************************************************************************************VHCPGVFHLGYD****************
Disordered Region (DISOPRED)
MDWNLKPAWDFTEF**************************************************************************LVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKR************************************************************************************************************************************************************************************************************************************PFHWE
Disordered Region (DISEMBL)
MDWNLKPAWDFTEFEQEAIPNVD*********KGNFSVDLKLGQVNSSAEDSLNKCK****************************ASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDG*************SRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNEHHRLNLPDERNLFLRSPSSSYKTGKQFTFLQGDNPTF************PLLGTANLSDRSGASHNVFHDRSTTQDSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE
Disordered Region (DISPRO)
*****KPAWDFTEFEQE*****************NFSVD*KLGQVN*************************************QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKR*************************************************WTGV*N******RYNEHHRLNLPDERNL*************Q***********************************************************************************************PMESVLVSSDQDDNVHCPGVFHLGY*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDWNLKPAWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNEHHRLNLPDERNLFLRSPSSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHDRSTTQDSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
P0DI11	359	Squamosa promoter-binding	yes	no	0.881	0.930	0.405	4e-58
B9DI20	359	Squamosa promoter-binding	yes	no	0.881	0.930	0.405	4e-58
Q6YZE8	455	Squamosa promoter-binding	yes	no	0.762	0.635	0.386	3e-53
Q0J0K1	472	Squamosa promoter-binding	no	no	0.970	0.779	0.339	1e-48
Q0JGI1	412	Squamosa promoter-binding	no	no	0.625	0.575	0.440	4e-39
Q2R3Y1	352	Putative squamosa promote	no	no	0.667	0.718	0.39	4e-36
Q700C2	988	Squamosa promoter-binding	no	no	0.248	0.095	0.648	1e-31
Q9S7P5	927	Squamosa promoter-binding	no	no	0.277	0.113	0.585	6e-31
Q8RY95	1035	Squamosa promoter-binding	no	no	0.250	0.091	0.614	5e-30
A3A2Z8	469	Squamosa promoter-binding	no	no	0.337	0.272	0.488	5e-30

>sp|P0DI11|SP13B_ARATH Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana GN=SPL13B PE=3 SV=1

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 164/404 (40%), Positives = 216/404 (53%), Gaps = 70/404 (17%)

Query: 1   MDWNLKPAWDF-TEFEQEAIPNVDAVDES-----SSRTKGNFSVDLKLGQ--VNSSAE-- 50
           MDWN K +  + + F+QE  P++  +D S     SS++K +FS DLKLG+   NSS+   
Sbjct: 1   MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFG 58

Query: 51  -----DSLNKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHR 105
                 SL+K K+   +K E    S S +        +Q   CLVDGCDSD SNCR+YH+
Sbjct: 59  DTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHK 118

Query: 106 RHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 165
           RHKVC++HSKTP V I G KQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP+
Sbjct: 119 RHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPE 178

Query: 166 PLSRTGTFLSNYQGASLLPFS-SSHMYPSATVVKPTWTG---VVNTEADARRYNEHHRLN 221
            + R   F + +QG+ LL FS  SH++P+ +V+ P+W      V   A+   Y +     
Sbjct: 179 HIGRPANFFTGFQGSKLLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYV 238

Query: 222 L---PDERNLFL---RSPSSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSD 275
           +   P +  +      SP+S+    KQF FLQ        + SS          TA+L +
Sbjct: 239 VGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQ-------EEESSR---------TASLCE 282

Query: 276 RSGASHNVFHDRSTTQDSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHS 335
           R           S   DSDCALSLLSS ++    +    + PP S+             S
Sbjct: 283 RM---------TSCIHDSDCALSLLSSSSSSVPHL----LQPPLSL-------------S 316

Query: 336 VEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE 379
            E +E+V   S   +N        +   G+ A   PQT PFHWE
Sbjct: 317 QEAVETVFYGSGLFENASAVSDGSV-ISGNEAVRLPQTFPFHWE 359

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Arabidopsis thaliana (taxid: 3702)

>sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana GN=SPL13A PE=2 SV=1

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 164/404 (40%), Positives = 216/404 (53%), Gaps = 70/404 (17%)

Query: 1   MDWNLKPAWDF-TEFEQEAIPNVDAVDES-----SSRTKGNFSVDLKLGQ--VNSSAE-- 50
           MDWN K +  + + F+QE  P++  +D S     SS++K +FS DLKLG+   NSS+   
Sbjct: 1   MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFG 58

Query: 51  -----DSLNKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHR 105
                 SL+K K+   +K E    S S +        +Q   CLVDGCDSD SNCR+YH+
Sbjct: 59  DTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHK 118

Query: 106 RHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 165
           RHKVC++HSKTP V I G KQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP+
Sbjct: 119 RHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPE 178

Query: 166 PLSRTGTFLSNYQGASLLPFS-SSHMYPSATVVKPTWTG---VVNTEADARRYNEHHRLN 221
            + R   F + +QG+ LL FS  SH++P+ +V+ P+W      V   A+   Y +     
Sbjct: 179 HIGRPANFFTGFQGSKLLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYV 238

Query: 222 L---PDERNLFL---RSPSSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSD 275
           +   P +  +      SP+S+    KQF FLQ        + SS          TA+L +
Sbjct: 239 VGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQ-------EEESSR---------TASLCE 282

Query: 276 RSGASHNVFHDRSTTQDSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHS 335
           R           S   DSDCALSLLSS ++    +    + PP S+             S
Sbjct: 283 RM---------TSCIHDSDCALSLLSSSSSSVPHL----LQPPLSL-------------S 316

Query: 336 VEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE 379
            E +E+V   S   +N        +   G+ A   PQT PFHWE
Sbjct: 317 QEAVETVFYGSGLFENASAVSDGSV-ISGNEAVRLPQTFPFHWE 359

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6YZE8|SPL16_ORYSJ Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 190/367 (51%), Gaps = 78/367 (21%)

Query: 75  RARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSR 134
           R  AA    Q  SC VDGC  DLS CRDYHRRHKVCE HSKTP V++ G++ RFCQQCSR
Sbjct: 105 RGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSR 164

Query: 135 FHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGASLLPFSSSHMYPSA 194
           FH L+EFDE KRSCRKRLDGHNRRRRKPQPDP++ + ++L++ QGA   PF++    P A
Sbjct: 165 FHLLQEFDEAKRSCRKRLDGHNRRRRKPQPDPMN-SASYLASQQGARFSPFATPR--PEA 221

Query: 195 TVVKPTWTGVVNTEADARRYNEHHR--LNLPDERNLFLRSPSSSYKTGKQFTFLQ----- 247
                +WTG++ TE     Y  HH+  L +   +  F+ S S     G++F FLQ     
Sbjct: 222 -----SWTGMIKTEESP--YYTHHQIPLGISSRQQHFVGSTSDG---GRRFPFLQEGEIS 271

Query: 248 -------GDNPTFNSQTSSEASVSQPLLGTA-----NLSDRSGASHNVFHDRSTTQ--DS 293
                  G  P   +  ++ ASV QPLL T                 +F D   TQ  DS
Sbjct: 272 FGTGAGAGGVPMDQAAAAAAASVCQPLLKTVAPPPPPHGGGGSGGGKMFSDGGLTQVLDS 331

Query: 294 DCALSLLSSPTTQTS---GISLSQMMPPSSMPLVRSLGTSL----------------HNH 334
           DCALSLLS+P   T+   G     + P   +P+ + L + L                H+ 
Sbjct: 332 DCALSLLSAPANSTAIDVGGGRVVVQPTEHIPMAQPLISGLQFGGGGGSSAWFAARPHHQ 391

Query: 335 SV----------------------EPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQ 372
           +                       E + +VL S+D + N +  G+FH+G +GS +  T  
Sbjct: 392 AATGAAATAVVVSTAGFSCPVVESEQLNTVLSSNDNEMNYN--GMFHVGGEGS-SDGTSS 448

Query: 373 TIPFHWE 379
           ++PF W+
Sbjct: 449 SLPFSWQ 455

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0J0K1|SPL18_ORYSJ Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 164/483 (33%), Positives = 227/483 (46%), Gaps = 115/483 (23%)

Query: 1   MDWNLK--PAWDFTEFEQEAIPN-----------VDAVDES-SSRTKGNFSVDLKLGQVN 46
           MDW+LK   +WD  E E  A+PN           + AV  S  +  +   SVDLKLG + 
Sbjct: 1   MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLG 60

Query: 47  S-SAEDSLNKCKEPVASKMES-----------PSPSGSFKRARAANNGS--QTASCLVDG 92
              A D+L +      + + S           PS S + KR R    G   Q  SC VDG
Sbjct: 61  EFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTS-TLKRPRGGGGGGGGQCPSCAVDG 119

Query: 93  CDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRL 152
           C +DLS  RDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L EFDE KRSCRKRL
Sbjct: 120 CKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRL 179

Query: 153 DGHNRRRRKPQPDPLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADAR 212
           DGHNRRRRKPQ D +S +G+F+++ QG     F+           +P+W G++ +E    
Sbjct: 180 DGHNRRRRKPQADSMS-SGSFMTSQQGTRFASFTPPR-------PEPSWPGIIKSEETPY 231

Query: 213 RYNEHHRLNLPDERNL-FLRSPSS------SYKTGKQFTFL-QGDNPTFNSQTSS----- 259
             + HH   +   R   F+ SPSS      S K G++F FL +GD  +F     +     
Sbjct: 232 YSHHHHPHPVMTSRQPHFVGSPSSATTAAFSPKEGRRFPFLHEGDQISFGGGGGAAAAAT 291

Query: 260 -EASVSQPLLGTANLSDRSGASHNVFHD-----------------RSTTQDSDCALSLLS 301
            E SV Q  +      + S ++     D                      DSDCALSLLS
Sbjct: 292 LEISVCQTTVVAPPPPESSSSNKMFSSDGLTTATTTTTTAHHHHHHHQVLDSDCALSLLS 351

Query: 302 SPTTQTSGISLSQMMPPS-----------------SMPLVRSLGTSLHNHS--------- 335
           SP   +S + +S+M+ PS                 + PLV +L       S         
Sbjct: 352 SPANSSS-VDVSRMVQPSPAAAAGAEHHHHHQIPMAQPLVPNLQQQFGGSSPWFASSPAA 410

Query: 336 -------------------VEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPF 376
                               + + +VLV    ++ ++  G+FH+G +GS+   +P ++PF
Sbjct: 411 AAVAGGGFACPSMDSEQQQQQQLNAVLVPGSNENEMNYHGMFHVGGEGSSDGTSP-SLPF 469

Query: 377 HWE 379
            W+
Sbjct: 470 SWQ 472

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0JGI1|SPL2_ORYSJ Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2

 Score =  162 bits (410), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/259 (44%), Positives = 146/259 (56%), Gaps = 22/259 (8%)

Query: 74  KRARAANNGSQTA--SCLVDGCDSDLSNC-RDYHRRHKVCELHSKTPQVLICGQKQRFCQ 130
           KRARA   G Q A  +C V+GC +DLS C RDYHRRHKVCE HSKT  V + GQ+QRFCQ
Sbjct: 77  KRARAGQ-GQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQ 135

Query: 131 QCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGASLLPFSSSHM 190
           QCSRFH L EFDE KRSCRKRLDGHN+RRRKPQPDPL+  G   +N+ GA+    S   +
Sbjct: 136 QCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPDPLN-PGNLFANHHGAARFT-SYPQI 193

Query: 191 YPSATVVKPTWT----GVVNTE-ADARRYNEHHRLNL-----PDERNLFLRSPSSSYKTG 240
           + +A  + P  T     VV TE AD  +   +H L+L         ++F    + + K  
Sbjct: 194 FSTAASMSPQETKWPANVVKTEAADVFQEPYYHALHLNGAGAAAAASIFHHGGNKARK-- 251

Query: 241 KQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHDRSTTQDS---DCAL 297
             F FL  D+    +  S      QP   T +   RS +S    + +    D    +CAL
Sbjct: 252 HHFPFLTADHGGGAAAASPLFGC-QPFTITPSSESRSSSSSRHSNGKMFAHDGGLDNCAL 310

Query: 298 SLLSSPTTQTSGISLSQMM 316
           SLLS   T T+ I++ Q +
Sbjct: 311 SLLSDNPTPTAQITIPQPL 329

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2R3Y1|SPL19_ORYSJ Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/300 (39%), Positives = 153/300 (51%), Gaps = 47/300 (15%)

Query: 87  SCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKR 146
           +C VDGC SDLS CRDYHRRHKVCE H+KTP V++ GQ+QRFCQQCSRFH L EFD+GK+
Sbjct: 92  ACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKK 151

Query: 147 SCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVN 206
           SCRKRLDGHNRRRRKPQ D L+            S LP+  ++ +     V P    + +
Sbjct: 152 SCRKRLDGHNRRRRKPQHDALNPR----------SFLPYHQANQF----SVYPQTFPIAD 197

Query: 207 TEADARRYNEHHRLNLPDERN-LFLRSPSSSYKTGKQFTFLQ-GDNPTFNSQTSSEASVS 264
             ADA        L  P +R+  F  S S +++  KQF F+Q G +    ++       S
Sbjct: 198 QNADA--------LMRPLDRHPPFSISFSGTFREPKQFPFMQDGGSGLGAARHDLLRPFS 249

Query: 265 QPLLGTANLSDRSGASHNVFHDRSTTQDSDCALSLLS-----SPTTQTSGISLSQMMPPS 319
            P  G AN++    A + V H      D +CALSLLS     SP    S  +      PS
Sbjct: 250 SPEDG-ANITTTRSACNGVPHG----LDPECALSLLSSSLHPSPAAGISSATAPPQFAPS 304

Query: 320 SMPLVRSLGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE 379
           S   + +   ++         SV       D+V  P V +         D  Q +PF W+
Sbjct: 305 SFSRIAASSQAVTTAFASDGGSVA-----GDHVLVPAVTY--------EDPSQAMPFSWQ 351

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 68/94 (72%)

Query: 88  CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRS 147
           C VD C  DLS  +DYHRRHKVCE+HSK  + L+  Q QRFCQQCSRFH L EFDEGKRS
Sbjct: 82  CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 141

Query: 148 CRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGAS 181
           CR+RLDGHNRRRRK QPD ++     L N    S
Sbjct: 142 CRRRLDGHNRRRRKTQPDAITSQVVALENRDNTS 175

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 76/111 (68%), Gaps = 6/111 (5%)

Query: 83  SQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 142
           S+   C VD C +DLS  +DYHRRHKVCE+HSK    L+ G  QRFCQQCSRFH LEEFD
Sbjct: 122 SRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 181

Query: 143 EGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFL-----SNYQGASLLPFSSS 188
           EGKRSCR+RL GHN+RRRK  PD +   GT +     SNY   +LL   S+
Sbjct: 182 EGKRSCRRRLAGHNKRRRKANPDTIG-NGTSMSDDQTSNYMLITLLKILSN 231

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3

 Score =  132 bits (332), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 71/96 (73%), Gaps = 1/96 (1%)

Query: 74  KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCS 133
           K+ R+ + G     C VD C  DLS+ +DYHRRHKVCE+HSK  + L+  Q QRFCQQCS
Sbjct: 106 KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCS 165

Query: 134 RFHCLEEFDEGKRSCRKRLDGHNRRRRK-PQPDPLS 168
           RFH L EFDEGKRSCR+RL GHNRRRRK  QP+ ++
Sbjct: 166 RFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVA 201

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|A3A2Z8|SPL3_ORYSJ Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 88/133 (66%), Gaps = 5/133 (3%)

Query: 38  VDLKLGQVNSSAED---SLNKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCD 94
           + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+
Sbjct: 131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCN 188

Query: 95  SDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDG 154
            DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ KRSCR+RL  
Sbjct: 189 VDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHD 248

Query: 155 HNRRRRKPQPDPL 167
           HN RRRKPQP+ +
Sbjct: 249 HNARRRKPQPEAI 261

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
219879368	379	squamosa promoter-binding protein [Citru	1.0	1.0	0.976	0.0
443429769	389	SBP-box transcription factor [Betula lum	0.997	0.971	0.638	1e-133
225456345	377	PREDICTED: squamosa promoter-binding-lik	0.973	0.978	0.599	1e-127
224136213	381	hypothetical protein POPTRDRAFT_733659 [	0.981	0.976	0.613	1e-125
255540185	382	Squamosa promoter-binding protein, putat	0.934	0.926	0.565	1e-108
302399059	415	SPL domain class transcription factor [M	0.994	0.908	0.556	1e-105
224122074	346	hypothetical protein POPTRDRAFT_570289 [	0.778	0.852	0.651	1e-102
356513427	390	PREDICTED: squamosa promoter-binding-lik	0.981	0.953	0.539	2e-99
449440967	379	PREDICTED: squamosa promoter-binding-lik	0.957	0.957	0.518	3e-99
356527606	396	PREDICTED: squamosa promoter-binding-lik	0.984	0.941	0.534	8e-97

>gi|219879368|gb|ACL51016.1| squamosa promoter-binding protein [Citrus trifoliata]

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/379 (97%), Positives = 373/379 (98%)

Query: 1   MDWNLKPAWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPV 60
           MDWNLKPAWDFTEF+QEAIPNVDAVD SSSRTKGNFSVDLKLG+VNSSAEDSLNKCKEP 
Sbjct: 1   MDWNLKPAWDFTEFQQEAIPNVDAVDGSSSRTKGNFSVDLKLGRVNSSAEDSLNKCKEPG 60

Query: 61  ASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVL 120
           ASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVL
Sbjct: 61  ASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVL 120

Query: 121 ICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGA 180
           ICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGA
Sbjct: 121 ICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGA 180

Query: 181 SLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNEHHRLNLPDERNLFLRSPSSSYKTG 240
           SLLPFSSSHMYPSATVVKPTWTGVVNTEADAR YNEHHRLNLPDERNLFLRSPSSSYKTG
Sbjct: 181 SLLPFSSSHMYPSATVVKPTWTGVVNTEADARCYNEHHRLNLPDERNLFLRSPSSSYKTG 240

Query: 241 KQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHDRSTTQDSDCALSLL 300
           KQFTFLQGDN TFNSQTS EASVSQPLLGTANLSDRSGASHNVFHDRSTTQDSDCALSLL
Sbjct: 241 KQFTFLQGDNSTFNSQTSPEASVSQPLLGTANLSDRSGASHNVFHDRSTTQDSDCALSLL 300

Query: 301 SSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHL 360
           SSPTTQ+SGISLSQMMPPSSMPLVR LGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHL
Sbjct: 301 SSPTTQSSGISLSQMMPPSSMPLVRPLGTSLHNHSVEPMESVLVSSDQDDNVHCPGVFHL 360

Query: 361 GYDGSAASDTPQTIPFHWE 379
           GYDGSAASDTPQTIPFHWE
Sbjct: 361 GYDGSAASDTPQTIPFHWE 379

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443429769|gb|AGC92796.1| SBP-box transcription factor [Betula luminifera]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/390 (63%), Positives = 302/390 (77%), Gaps = 12/390 (3%)

Query: 1   MDWNLKPA-WDFTEFEQEAIPNVDAVDESSS----RTK-GNFSVDLKLGQVNSSAEDSLN 54
           MDW+LK + WD TE EQEA PN++ V  SSS    RT  G+FSVDLKLGQ+ +S  +S+N
Sbjct: 1   MDWHLKASSWDLTELEQEAFPNIETVGGSSSLKDLRTNTGDFSVDLKLGQLGNSGPESVN 60

Query: 55  KCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHS 114
           K KEP  SK+ S SPSGS KRARAANNG+Q  SCLVDGC SDLSNCRDYHRRHKVCELHS
Sbjct: 61  KWKEPGVSKIAS-SPSGSSKRARAANNGTQPVSCLVDGCTSDLSNCRDYHRRHKVCELHS 119

Query: 115 KTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFL 174
           KTP+V ICGQKQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP+PLSR+G FL
Sbjct: 120 KTPEVTICGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLSRSGNFL 179

Query: 175 SNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNEHHRLNLPDERNLFLRSP- 233
           SNYQG  ++PFSSS +YPS TVV   W GV+N+ ADAR +N+  +L L DE+ LFLRSP 
Sbjct: 180 SNYQGTQVIPFSSSLVYPSTTVVSAAWAGVLNSAADARLHNQQQQLQLIDEQKLFLRSPP 239

Query: 234 -SSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHDRSTT-- 290
            +SS+  GKQ + LQG + T  +Q+S EA V +PLL T  L++  GA   ++ DR TT  
Sbjct: 240 STSSFIGGKQLSSLQGGSTTLGNQSSLEAPVCRPLLRTIALAESGGARTKMYCDRLTTRV 299

Query: 291 QDSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESVLVSSDQDD 350
           ++SDCALSLLSSP +QTS +  + +  P+++ L++ LG+SLH +S+EPM+SVLVSS  D 
Sbjct: 300 EESDCALSLLSSPQSQTSRLGFTHIAHPNAVSLLQPLGSSLHGNSLEPMDSVLVSSGSDS 359

Query: 351 NVH-CPGVFHLGYDGSAASDTPQTIPFHWE 379
           NVH C  +FH+G DGS A+ TPQT+PFHWE
Sbjct: 360 NVHNCQAMFHMGSDGSQANGTPQTLPFHWE 389

Source: Betula luminifera

Species: Betula luminifera

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456345|ref|XP_002280160.1| PREDICTED: squamosa promoter-binding-like protein 13 [Vitis vinifera] gi|147837620|emb|CAN77059.1| hypothetical protein VITISV_022138 [Vitis vinifera] gi|297734432|emb|CBI15679.3| unnamed protein product [Vitis vinifera]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/387 (59%), Positives = 290/387 (74%), Gaps = 18/387 (4%)

Query: 1   MDWNLK-PAWDFTEFEQEAIPNVDAVDESSS----RTKGNFSVDLKLGQVNSSAEDSLNK 55
           MDWNLK P+WD TE E EAIPN+D V  +SS    +T G+FS+DLKLGQV++ + D  +K
Sbjct: 1   MDWNLKTPSWDLTELETEAIPNIDVVGGTSSSGVHKTGGDFSIDLKLGQVSNPSSDFADK 60

Query: 56  CKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSK 115
            KE   S + +P PSGS KRARA NNGSQT SCLVDGC+SDLSNCR+YHRRHKVCELHSK
Sbjct: 61  LKEQKFSSIAAPLPSGSSKRARATNNGSQTVSCLVDGCNSDLSNCREYHRRHKVCELHSK 120

Query: 116 TPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLS 175
           T QV I G  QRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP+PLSR G+FL+
Sbjct: 121 TAQVTIGGHTQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLT 180

Query: 176 NYQGASLLPFSSSHMYPSATVVKPTW-TGVVNTEADARRYNEHHRLNLPDERNLFLRSPS 234
           NYQG+ LLPFSS H+YP+  ++ P W  G+V TE  A  YN+H +L L ++++L L S S
Sbjct: 181 NYQGSGLLPFSSPHLYPTTAMMSPNWGAGLVKTEEGAILYNQHQQLPLLEKQHLHLGSSS 240

Query: 235 SSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHDRSTTQ--D 292
           S YK GKQ TFLQ D+P+ ++ T+SEA V QPL         +G    +F+DR T Q  +
Sbjct: 241 SFYKGGKQLTFLQADHPSLSNYTTSEAPVCQPL---------AGHGCKMFYDRLTNQVLE 291

Query: 293 SDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESVLVSSDQDDNV 352
           SDCALSLLSSP TQ+SGISLS M+ P+S+ L +    SLH ++ +P++SVLVS+    ++
Sbjct: 292 SDCALSLLSSPQTQSSGISLSNMVQPNSVSLAQPSAPSLH-YNNQPVDSVLVSNAGVTDI 350

Query: 353 HCPGVFHLGYDGSAASDTPQTIPFHWE 379
           HCPG+FH+G DGS+ ++ PQ +PF W+
Sbjct: 351 HCPGIFHIGSDGSSGNEAPQKLPFFWD 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136213|ref|XP_002322273.1| hypothetical protein POPTRDRAFT_733659 [Populus trichocarpa] gi|222869269|gb|EEF06400.1| hypothetical protein POPTRDRAFT_733659 [Populus trichocarpa]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/388 (61%), Positives = 289/388 (74%), Gaps = 16/388 (4%)

Query: 1   MDWNLKP-AWDFTEFEQEAIPNV--DAVDESSS----RTKGNFSVDLKLGQVNSSAEDSL 53
           MDWNLK  +WD TEFEQ A+P++  DA D S++    R+ G FS+DLKLG+V  S+++S+
Sbjct: 1   MDWNLKATSWDLTEFEQGAVPSISIDAFDRSTNFGVNRSGGGFSIDLKLGRVGDSSDESI 60

Query: 54  NKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELH 113
              K+P  SK++ P PSGS KRAR AN+G+Q A CLVDGC+SDLS CRDYHRRHKVCELH
Sbjct: 61  INWKQPGVSKLQ-PLPSGSTKRARGANSGTQVAMCLVDGCNSDLSACRDYHRRHKVCELH 119

Query: 114 SKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTF 173
           SKTPQV + GQKQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQPDP SR  +F
Sbjct: 120 SKTPQVTVGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDPHSRPPSF 179

Query: 174 LSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNEHHRLNLPDERNLFLRSP 233
           LSNYQG  L PFSSSH+YPS+TV+ PTW+GV +TEAD R +N H    LPD++NLF  S 
Sbjct: 180 LSNYQGTQLFPFSSSHVYPSSTVLNPTWSGVASTEADGRHHNLH---QLPDKQNLFFGSS 236

Query: 234 SSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGA-SHNVFHDRST-TQ 291
           SSSY   KQF FL   +P  N+QTS EASV QPLL T  L   SGA SH++F DR T  Q
Sbjct: 237 SSSYHGVKQFPFLHWHSPGLNNQTSPEASVCQPLLRTIALPGSSGASSHSMFCDRLTQIQ 296

Query: 292 DSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESVLVSSDQDDN 351
           DSDCALSLLSS  T  SG   + M+  +S+PL   +G ++H+H + P++SVLV +++D N
Sbjct: 297 DSDCALSLLSSTQTHASG---NLMVQHNSVPLSHPIGPTVHDHGLGPIDSVLVFNNRDAN 353

Query: 352 VHCPGVFHLGYDGSAASDTPQTIPFHWE 379
           VH PG F     GS+ +  PQT+PF+WE
Sbjct: 354 VHFPGTFQPQSGGSSGNKAPQTLPFNWE 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540185|ref|XP_002511157.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223550272|gb|EEF51759.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/407 (56%), Positives = 281/407 (69%), Gaps = 53/407 (13%)

Query: 1   MDWNLKP-AWDFTEFEQEAIPNVDAVDESSS-----RTKGNFSVDLKLGQVNSSAEDSLN 54
           MDWNL   +W+ TEF+QEAIPN+D+ D  S+     R+ G+FS+DLKLG+V+ S + ++N
Sbjct: 1   MDWNLTATSWNLTEFKQEAIPNLDSFDSRSASFADNRSSGDFSIDLKLGRVSHSNDQAIN 60

Query: 55  KCKEPVA-SKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELH 113
           + K+P A SKME  SPS S KRARAANNG+Q A CLVDGC +DLSNCRDYHRRHKVCELH
Sbjct: 61  QWKQPGADSKMECSSPSVSTKRARAANNGTQVAYCLVDGCSADLSNCRDYHRRHKVCELH 120

Query: 114 SKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTF 173
           SKTPQV I GQK+RFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQPD LSR  +F
Sbjct: 121 SKTPQVTIAGQKKRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDLLSRPASF 180

Query: 174 LSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADAR-RYNEHHRLNLPDERNLFL-- 230
           LSNY+G  LLPFSS+H+YPS TVV   W+GVVNTEADA  RY+   R+N+  + + F   
Sbjct: 181 LSNYKGNHLLPFSSTHVYPSTTVVSSAWSGVVNTEADAAGRYSVQQRMNMIGKHSPFFGS 240

Query: 231 ---RSPSSSYKTGKQFTFLQGDN--PTFNSQTSS-------EASVSQPLLGTANLSDRSG 278
               S SSSYK GKQ  FLQ DN     N QT+S        AS+ QPLL +  + + S 
Sbjct: 241 SLSSSSSSSYKGGKQLPFLQVDNNHSPLNHQTASPPPPLSHAASICQPLLRSITMDESSV 300

Query: 279 -ASHNVFHDR---STTQ--DSDCALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLH 332
            +S+++F D+   +TTQ  DSDCALSLLSS   Q SG   + M+ P+S+PL         
Sbjct: 301 ISSYSMFCDKLAPTTTQVRDSDCALSLLSSAKAQISG---NHMLQPNSVPLA-------- 349

Query: 333 NHSVEPMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE 379
            HS EPM+SVLVS+ +D               S+  + PQT+PF+WE
Sbjct: 350 -HSAEPMDSVLVSNGRD-------------AWSSTDNAPQTLPFNWE 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399059|gb|ADL36824.1| SPL domain class transcription factor [Malus x domestica]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/417 (55%), Positives = 274/417 (65%), Gaps = 40/417 (9%)

Query: 1   MDWNLKPA-WDFTEFEQEAIPNVDAVDESSS-----RT-KG-NFSVDLKLGQVNSSAEDS 52
           MDWNLK A WD  E EQ    N+D + + SS     RT KG NFSVDLKLGQ+  S  + 
Sbjct: 1   MDWNLKAASWDLPELEQGTFSNLDTIVDGSSSFGDHRTFKGSNFSVDLKLGQLGGSGNNE 60

Query: 53  L-NKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCE 111
           L    KEP   K  S SPSG  KR+RAA +GSQ  SCLVDGC+SDLS CRDYHRRHKVCE
Sbjct: 61  LVGMLKEPGGLKTTSSSPSGPLKRSRAAYSGSQMVSCLVDGCNSDLSTCRDYHRRHKVCE 120

Query: 112 LHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTG 171
           LHSKTPQV I G KQRFCQQCSRFH  EEFDEGKRSCRKRLDGHNRRRRKPQP+PLSR G
Sbjct: 121 LHSKTPQVTINGNKQRFCQQCSRFHAPEEFDEGKRSCRKRLDGHNRRRRKPQPEPLSRPG 180

Query: 172 TFLSNYQGASLLPFSSSHMYPSATVVKPTW-TGVVNTEADARRYNEHHRLNLPDERNLFL 230
           +FLS+YQG  LLPFSSS +YPS  V+ PTW TG+V TE D   +N   +L L D++N+FL
Sbjct: 181 SFLSSYQGTQLLPFSSSLVYPSTNVINPTWATGIVKTEPDPGVHNL--QLPLIDKQNMFL 238

Query: 231 ----RSPSSSYKTGKQFTFLQGDNPT-----FNSQTSSEASVSQPLLGTANLSDRSGASH 281
                + SS YK GKQF+  Q  N +       +      SV QPLL T + S+ +    
Sbjct: 239 GSSVSTSSSGYKGGKQFSLFQSSNSSPLHHNHQTSHHHGTSVCQPLLNTISFSETASGGG 298

Query: 282 N-----VFHDRSTTQ--DSDCALSLLSSP-TTQTSGISLSQ-MMPPSSMPLVRSL----G 328
                 +F DR TTQ  DSDCALSLLSSP T QTS I L   +  P+S+ L++      G
Sbjct: 299 GTTKSKMFCDRLTTQIHDSDCALSLLSSPQTQQTSEIGLRHTVQQPNSISLMQQRLGPNG 358

Query: 329 TSLHNHSVEPMESVLVSSDQDD-NVHCPGVFHLGYDGSAAS-----DTPQTIPFHWE 379
              +N S+EPM+SV+VS+   D NVHCPG+F L  DGS  +      +PQT+PFHW+
Sbjct: 359 LRRNNSSMEPMDSVMVSNGSGDANVHCPGMFRLISDGSQGNGNQHHQSPQTLPFHWQ 415

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122074|ref|XP_002318746.1| hypothetical protein POPTRDRAFT_570289 [Populus trichocarpa] gi|222859419|gb|EEE96966.1| hypothetical protein POPTRDRAFT_570289 [Populus trichocarpa]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/310 (65%), Positives = 230/310 (74%), Gaps = 15/310 (4%)

Query: 1   MDWNLKP-AWDFTEFEQEAIPNV--DAVDE----SSSRTKGNFSVDLKLGQVNSSAEDSL 53
           MDWNLK  +WD TEFEQ A+P++  DA        ++RT G FS+DLKLG+V +S+++S+
Sbjct: 17  MDWNLKATSWDLTEFEQGAVPSICIDAFGRPTNFGANRTGGGFSIDLKLGRVGNSSDESM 76

Query: 54  NKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELH 113
              K+P  SK+ES SPSGS KRAR ANNG+Q A CLVDGC+SDLS CRDYHRRHKVCELH
Sbjct: 77  VNWKQPGVSKLES-SPSGSTKRARGANNGTQVAMCLVDGCNSDLSTCRDYHRRHKVCELH 135

Query: 114 SKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTF 173
           SKTPQV I GQKQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQPDP S   +F
Sbjct: 136 SKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDPFSHPPSF 195

Query: 174 LSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNEHHRLNLPDERNLFLRSP 233
           L N+QG  + PFSSSH+Y S  VV  TW+GV NTEAD   YN H    LPD++NLFL S 
Sbjct: 196 LPNHQGTQIFPFSSSHVYHSTAVVNSTWSGVANTEADGGHYNLHQ---LPDKQNLFLGSS 252

Query: 234 SSSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGA-SHNVFHDRSTT-- 290
           S+SYK GK F FLQ DNP  N+QT SEASV  PL         SGA SH++F DR  T  
Sbjct: 253 SNSYKGGKLFPFLQCDNPCLNNQT-SEASVCLPLPRAIAFPGSSGASSHSMFCDRLATQV 311

Query: 291 QDSDCALSLL 300
           QDSDCALSL 
Sbjct: 312 QDSDCALSLF 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513427|ref|XP_003525415.1| PREDICTED: squamosa promoter-binding-like protein 13-like isoform 1 [Glycine max] gi|356513429|ref|XP_003525416.1| PREDICTED: squamosa promoter-binding-like protein 13-like isoform 2 [Glycine max]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 214/397 (53%), Positives = 270/397 (68%), Gaps = 25/397 (6%)

Query: 1   MDWNLKP-AWDFTEFEQEAIPNVDAVDESSS----RTKGNFSVDLKLGQV-NSSAEDSLN 54
           MDWNLK  +WD +E +Q  +PN++ ++ SS     RTKG FSVDLKLGQV NS  E  L 
Sbjct: 1   MDWNLKALSWDLSEVDQANLPNMETMEGSSRYGMYRTKGEFSVDLKLGQVGNSGTESVLT 60

Query: 55  KCKEPVA-SKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELH 113
           K K+ V  SKM S S SGS KRARA +NG+QT SCLVDGC +DLSNCRDYHRRHKVCE+H
Sbjct: 61  KSKDAVGVSKMTSSSTSGSSKRARALSNGTQTVSCLVDGCHADLSNCRDYHRRHKVCEVH 120

Query: 114 SKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTF 173
           SKT QV I GQKQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP+ L+R+G+F
Sbjct: 121 SKTAQVSIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLTRSGSF 180

Query: 174 LSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYN---EHHRLNLPDERNLFL 230
           LSNYQG  LLPFSSSH YPS TVV PTW GV+ T  D R +     HH+++L D+++LFL
Sbjct: 181 LSNYQGTQLLPFSSSHEYPSTTVVNPTWGGVLTTSGDVRLHGHNQHHHQVHLADKQDLFL 240

Query: 231 RSPSSSYKTGKQFTFLQGDNPTFNSQT----SSEASVSQPLLGTANLSDRSGASHNVFHD 286
            S  + YK GKQ  F+QGD+ T N+++     +    +Q  L T+  S+  G    +F D
Sbjct: 241 GSSPAGYKEGKQLAFMQGDH-TLNNRSPHLPGASVGQAQMFLRTSLYSESDGLRCKMFCD 299

Query: 287 --RSTTQDSDC--ALSLLSSPTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVEPMESV 342
              S+ QD++   ALSLLSSP    S  +   +M  S  PL++ LG SLH++S+  ++ V
Sbjct: 300 SLTSSIQDNNTSRALSLLSSPPQPLSPGNGLNLMVNSHSPLMQPLGLSLHDNSLGSVDPV 359

Query: 343 LVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE 379
           L  +D         ++++G +GS  ++ P   PF WE
Sbjct: 360 LGPNDSSS------MYNIGSNGSQGNEAPPLFPFQWE 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440967|ref|XP_004138255.1| PREDICTED: squamosa promoter-binding-like protein 13A-like [Cucumis sativus] gi|449520513|ref|XP_004167278.1| PREDICTED: squamosa promoter-binding-like protein 13A-like [Cucumis sativus]

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 263/395 (66%), Gaps = 32/395 (8%)

Query: 1   MDWNLK-PAWDFTEFEQEAIPNVDAVDESSS-----RTKGNFSVDLKLGQVNSSAEDSLN 54
           MDWNLK P+WDFT+ EQ+A+ N++++  SS+      T G+F+VDLKLGQV++     + 
Sbjct: 1   MDWNLKTPSWDFTQLEQDALKNINSIGASSNFVEHIATSGDFTVDLKLGQVSNLGTKYV- 59

Query: 55  KCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHS 114
              EP   KM +PSPS   KRAR + NG+Q  SCLVDGC SDLSN RDYHRRHKVCELHS
Sbjct: 60  -VNEPGVFKM-APSPSEPSKRARGSGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHS 117

Query: 115 KTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFL 174
           KTPQV I G KQRFCQQCSRFH L+EFDEGKRSCRKRLDGHNRRRRKPQ D LSR  + L
Sbjct: 118 KTPQVTIGGLKQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQSDSLSR--SIL 175

Query: 175 SNYQGASLLPFSSSHMYPSATVVKPTWTGVV-NTEADARRYNEHHRLNLPDERNLFLRSP 233
           S+YQG+ LLPFSSSH+YPS  V+  +W  +  NTE DAR + +    + PD+ N++L S 
Sbjct: 176 SHYQGSQLLPFSSSHVYPSTLVMNHSWRDLANNTEIDARLHVQQEPTHFPDKHNIYLGSS 235

Query: 234 S--SSYKTGKQFTFLQGDNPTFNSQTSSEASVSQPLLGTANLSDRSGASHNVFHD--RST 289
           S  S +K GKQ TF+Q DNP        E+SV QPL+ T + S+       + +D  ++ 
Sbjct: 236 SNDSVHKIGKQVTFMQSDNP--------ESSVGQPLVKTIDFSENEIGRSKMLYDGFKTP 287

Query: 290 TQDSDCALSLLSSPTTQTSGISLSQMMPPSSM-----PLVRSLGTSLHNHSVEPMESVLV 344
             +SDCALSLLSS  TQ SGI  S+      +     PL  SLG   H++S+EP+ SVL 
Sbjct: 288 GHESDCALSLLSSLQTQASGIGFSEAEQDRHLISFLQPLDVSLG---HHNSLEPINSVLN 344

Query: 345 SSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE 379
            S  + +++C G+FH+  +       P ++PFHW+
Sbjct: 345 GSVSNADINCSGMFHIASNDGCNEAPPPSLPFHWQ 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527606|ref|XP_003532399.1| PREDICTED: squamosa promoter-binding-like protein 13-like [Glycine max]

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 215/402 (53%), Positives = 271/402 (67%), Gaps = 29/402 (7%)

Query: 1   MDWNLK-PAWDFTEFEQEAIPNVDAVDESSS----RTKGNFSVDLKLGQVNSSAEDS--L 53
           MDWNLK P+WD +E +Q  +PN++ ++ SS     RTKG FSVDLKLGQV +S  +S  L
Sbjct: 1   MDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMYRTKGEFSVDLKLGQVGNSGRESSVL 60

Query: 54  NKCKEPVA---SKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVC 110
            K K+  A   SKM S S SGS KRAR+ +NG+QT SCLVDGC SDLSNCRDYHRRHKVC
Sbjct: 61  TKSKDGGAVGVSKMISSSSSGSAKRARSLSNGTQTVSCLVDGCHSDLSNCRDYHRRHKVC 120

Query: 111 ELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD-PLSR 169
           E+HSKT QV I GQKQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP+  L+R
Sbjct: 121 EVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEVVLTR 180

Query: 170 TGTFLSNY-QGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARRYNE---HHRLNLPDE 225
           + +FLSNY QG  LL FSSSH+YPS TVV PT  GVV T  D R + +   HH+++L D+
Sbjct: 181 SASFLSNYHQGTQLLSFSSSHVYPSTTVVNPTLGGVV-TSGDVRLHGQNHHHHQMHLVDK 239

Query: 226 RNLFLRSPSSSYKTGKQFTFLQGDNPTFNSQT----SSEASVSQPLLGTANLSDRSGASH 281
           ++LFL S  + YK GK   F+QGD+ T N+Q+     +    +Q  L T+  S+  G   
Sbjct: 240 QDLFLGSSPTGYKEGKHLAFMQGDH-TLNNQSPHLPGASVGPAQMFLRTSPYSESGGLRC 298

Query: 282 NVFHDRSTTQ---DSDCALSLLSS-PTTQTSGISLSQMMPPSSMPLVRSLGTSLHNHSVE 337
            +F D  T     ++  ALSLLSS P   + G  L+QM+ P S PL++ LG SLH++S+ 
Sbjct: 299 KMFCDSLTGSAHGNTSRALSLLSSPPQPHSPGNGLNQMVNPHS-PLMQPLGLSLHDNSLG 357

Query: 338 PMESVLVSSDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE 379
            ++ VL  +  D   H   + H+G +GS  ++ P   PF WE
Sbjct: 358 SVDPVLGPNGSD---HSSSMHHIGSNGSQVNEAPPLFPFQWE 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2159717	359	SPL13A "SQUAMOSA PROMOTER-BIND	0.667	0.704	0.477	2e-61
TAIR|locus:2832472	359	SPL13B "SQUAMOSA PROMOTER-BIND	0.667	0.704	0.477	2e-61
TAIR|locus:2011706	988	AT1G76580 [Arabidopsis thalian	0.440	0.169	0.464	2.1e-31
TAIR|locus:2169248	419	SPL2 "squamosa promoter bindin	0.398	0.360	0.451	1.8e-30
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.411	0.150	0.438	3.5e-30
TAIR|locus:2016014	396	SPL10 "squamosa promoter bindi	0.374	0.358	0.469	1e-29
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.234	0.219	0.651	2.1e-29
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.263	0.107	0.603	4.2e-29
TAIR|locus:2015999	393	SPL11 "squamosa promoter-like	0.387	0.374	0.443	1.9e-28
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.271	0.274	0.571	5e-28

TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 136/285 (47%), Positives = 179/285 (62%)

Query:     1 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SSRTKGNFSVDLKLGQV--NSSA--- 49
             MDWN K +  +   F+QE  P++  +D S     SS++K +FS DLKLG+   NSS+   
Sbjct:     1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFG 58

Query:    50 --ED--SLNKCKEPVASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDYH 104
               E   SL+K K+   +K E  S S S KR R    G+ Q   CLVDGCDSD SNCR+YH
Sbjct:    59 DTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYH 117

Query:   105 RRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP 164
             +RHKVC++HSKTP V I G KQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP
Sbjct:   118 KRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQP 177

Query:   165 DPLSRTGTFLSNYQGASLLPFSS-SHMYPSATVVKPTW-TGVVNTE--ADARRYNEHHRL 220
             + + R   F + +QG+ LL FS  SH++P+ +V+ P+W   +V+    A+   Y +    
Sbjct:   178 EHIGRPANFFTGFQGSKLLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSY 237

Query:   221 ---NLPDERNLFL---RSPSSSYKTGKQFTFLQGDNPTFNSQTSS 259
                + P +  +      SP+S+    KQF FLQ +    +S+T+S
Sbjct:   238 VVGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQEEE---SSRTAS 279

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 136/285 (47%), Positives = 179/285 (62%)

Query:     1 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SSRTKGNFSVDLKLGQV--NSSA--- 49
             MDWN K +  +   F+QE  P++  +D S     SS++K +FS DLKLG+   NSS+   
Sbjct:     1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFG 58

Query:    50 --ED--SLNKCKEPVASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDYH 104
               E   SL+K K+   +K E  S S S KR R    G+ Q   CLVDGCDSD SNCR+YH
Sbjct:    59 DTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYH 117

Query:   105 RRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP 164
             +RHKVC++HSKTP V I G KQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP
Sbjct:   118 KRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQP 177

Query:   165 DPLSRTGTFLSNYQGASLLPFSS-SHMYPSATVVKPTW-TGVVNTE--ADARRYNEHHRL 220
             + + R   F + +QG+ LL FS  SH++P+ +V+ P+W   +V+    A+   Y +    
Sbjct:   178 EHIGRPANFFTGFQGSKLLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSY 237

Query:   221 ---NLPDERNLFL---RSPSSSYKTGKQFTFLQGDNPTFNSQTSS 259
                + P +  +      SP+S+    KQF FLQ +    +S+T+S
Sbjct:   238 VVGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQEEE---SSRTAS 279

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 2.1e-31, P = 2.1e-31
 Identities = 84/181 (46%), Positives = 98/181 (54%)

Query:     2 DWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPV 60
             DW +    WD   FE  AI  +       S  KG   +DL L    +  E +      P 
Sbjct:     8 DWQMNRWKWDGQRFE--AI-ELQGESLQLSNKKG---LDLNLPCGFNDVEGTPVDLTRP- 60

Query:    61 ASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVL 120
             + K+ S SP GS         G     C VD C  DLS  +DYHRRHKVCE+HSK  + L
Sbjct:    61 SKKVRSGSP-GS-----GGGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKAL 114

Query:   121 ICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGA 180
             +  Q QRFCQQCSRFH L EFDEGKRSCR+RLDGHNRRRRK QPD ++     L N    
Sbjct:   115 VGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPDAITSQVVALENRDNT 174

Query:   181 S 181
             S
Sbjct:   175 S 175

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 75/166 (45%), Positives = 101/166 (60%)

Query:    10 DFTEFEQEAIPNVDA--VDESSSRT----KGNFSVDLKLGQVNSSAED--SLNKCKE--- 58
             +FT    E++P   A  +D S S       G+  + LKLG+  +  ED   +   K    
Sbjct:    84 NFTSETGESLPGEFAKGIDTSPSLELSFGSGDPVLGLKLGK-RTYFEDFWEVENAKGLGL 142

Query:    59 PVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQ 118
             PV     S SP    K++++     QT  C V+GC+ DLS+ +DYHR+H++CE HSK P+
Sbjct:   143 PVTLASSSVSP---VKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPK 199

Query:   119 VLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP 164
             V++ G ++RFCQQCSRFHCL EFDE KRSCR+RL  HN RRRKP P
Sbjct:   200 VVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNP 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 3.5e-30, P = 3.5e-30
 Identities = 75/171 (43%), Positives = 100/171 (58%)

Query:     2 DWNLKP-AWDFTEFEQEAIP-NVDAVDESSSRTKGNF-SVDLKLGQVNSSAEDSLNKCKE 58
             +WN K   WD   FE + +   V   D +     G    +DL LG   ++ E++      
Sbjct:    42 EWNSKMWDWDSRRFEAKPVDVEVQEFDLTLRNRSGEERGLDLNLGSGLTAVEET------ 95

Query:    59 PVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQ 118
                +  ++  P+   K+ R+ + G     C VD C  DLS+ +DYHRRHKVCE+HSK  +
Sbjct:    96 --TTTTQNVRPN---KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATK 150

Query:   119 VLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKP-QPDPLS 168
              L+  Q QRFCQQCSRFH L EFDEGKRSCR+RL GHNRRRRK  QP+ ++
Sbjct:   151 ALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVA 201

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 69/147 (46%), Positives = 90/147 (61%)

Query:    40 LKLGQVNSSAE--DSLNKCKEPVASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDL 97
             LKLG+   S E     N     V+  + +PS     K+ ++     Q   C +DGC+ DL
Sbjct:   127 LKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVAR-KKTKSCGQSMQVPRCQIDGCELDL 185

Query:    98 SNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNR 157
             S+ +DYHR+H+VCE HSK P+V++ G ++RFCQQCSRFH + EFDE KRSCRKRL  HN 
Sbjct:   186 SSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNA 245

Query:   158 RRRKPQPD-PLSRTGTFLSNYQGASLL 183
             RRRKPQ   PL+    F    Q  S+L
Sbjct:   246 RRRKPQGVFPLNSERVF-DRRQHTSML 271

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010358 "leaf shaping" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 58/89 (65%), Positives = 70/89 (78%)

Query:    74 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCS 133
             K++RA+N  SQ   C V GC  DLS+ +DYH+RH+VCE HSKT  V++ G +QRFCQQCS
Sbjct:   110 KKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCS 169

Query:   134 RFHCLEEFDEGKRSCRKRLDGHNRRRRKP 162
             RFH L EFD+GKRSCR+RL GHN RRRKP
Sbjct:   170 RFHFLSEFDDGKRSCRRRLAGHNERRRKP 198

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 4.2e-29, P = 4.2e-29
 Identities = 61/101 (60%), Positives = 74/101 (73%)

Query:    83 SQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 142
             S+   C VD C +DLS  +DYHRRHKVCE+HSK    L+ G  QRFCQQCSRFH LEEFD
Sbjct:   122 SRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 181

Query:   143 EGKRSCRKRLDGHNRRRRKPQPDPLSRTGTFLSNYQGASLL 183
             EGKRSCR+RL GHN+RRRK  PD +   GT +S+ Q ++ +
Sbjct:   182 EGKRSCRRRLAGHNKRRRKANPDTIGN-GTSMSDDQTSNYM 221

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2015999 SPL11 "squamosa promoter-like 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 67/151 (44%), Positives = 88/151 (58%)

Query:    13 EFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPVASKMESPSPSGS 72
             +F Q   P    V  +S+ +     + LKLG+   S E       E  A  M+  +PS  
Sbjct:   104 DFVQVKAPTALEVSVASAES----DLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVV 159

Query:    73 FKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQC 132
               +++          C +DGC+ DLS+ + YHR+HKVCE HSK P+V + G ++RFCQQC
Sbjct:   160 AGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQC 219

Query:   133 SRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQ 163
             SRFH + EFDE KRSCRKRL  HN RRRKPQ
Sbjct:   220 SRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 60/105 (57%), Positives = 72/105 (68%)

Query:    66 SPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICG 123
             S S   S +R R   +G   Q   C V+GC  DL+N + Y+ RH+VC +HSKTP+V + G
Sbjct:    50 SSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAG 109

Query:   124 QKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLS 168
              +QRFCQQCSRFH L EFD  KRSCR+RL GHN RRRKPQP  LS
Sbjct:   110 IEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQPASLS 154

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9DI20	SP13A_ARATH	No assigned EC number	0.4059	0.8812	0.9303	yes	no
P0DI11	SP13B_ARATH	No assigned EC number	0.4059	0.8812	0.9303	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017953001 SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_16, whole genome shotgun sequence); (377 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
pfam03110	79	pfam03110, SBP, SBP domain	2e-50

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  163 bits (414), Expect = 2e-50
 Identities = 60/78 (76%), Positives = 67/78 (85%)

Query: 88  CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRS 147
           C V+GC +DLSN +DYHRRHKVCE+HSK P VL+ G +QRFCQQCSRFH L EFDEGKRS
Sbjct: 2   CQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKRS 61

Query: 148 CRKRLDGHNRRRRKPQPD 165
           CR+RL GHN RRRKPQPD
Sbjct: 62  CRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=5.8e-40  Score=264.92  Aligned_cols=78  Identities=62%  Similarity=1.141  Sum_probs=63.2

Q ss_pred             ceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccccchhHHHHHHhHHHhhhcCCCC
Q 016971           87 SCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP  164 (379)
Q Consensus        87 ~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~q~  164 (379)
                      +||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		6e-23
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		7e-18
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		2e-16

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 56/74 (75%)
Query: 88  CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRS 147
           C VD C +D+   + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+EFDE KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70
Query: 148 CRKRLDGHNRRRRK 161
           CR+RL GHN RRRK
Sbjct: 71  CRRRLAGHNERRRK 84

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/55 (69%), Positives = 42/55 (76%)
Query: 88  CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 142
           C VD C +DLS  +DYHRRHKVCE+HSK    L+ G  QRFCQQCSRFH LEEFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 85  TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEG 144
            A C V  C++D+S  + YH+RH+VC   +    V++ G+ +R+CQQC +FH L +FDEG
Sbjct: 3   VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEG 62
Query: 145 KRSCRKRLDGH-NRRRRKP 162
           KRSCR++L+ H NRR+RKP
Sbjct: 63  KRSCRRKLERHNNRRKRKP 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	4e-38
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	4e-37
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	2e-30

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  131 bits (330), Expect = 4e-38
 Identities = 50/94 (53%), Positives = 62/94 (65%)

Query: 78  AANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHC 137
            ++  S    C VD C +D+   + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 138 LEEFDEGKRSCRKRLDGHNRRRRKPQPDPLSRTG 171
           L+EFDE KRSCR+RL GHN RRRK   +    +G
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRKSSGESGPSSG 94

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  128 bits (323), Expect = 4e-37
 Identities = 37/82 (45%), Positives = 56/82 (68%)

Query: 84  QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDE 143
             A C V  C++D+S  + YH+RH+VC   +    V++ G+ +R+CQQC +FH L +FDE
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 144 GKRSCRKRLDGHNRRRRKPQPD 165
           GKRSCR++L+ HN RR++   D
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVD 83

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  109 bits (275), Expect = 2e-30
 Identities = 38/58 (65%), Positives = 42/58 (72%)

Query: 85  TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 142
              C VD C +DLS  +DYHRRHKVCE+HSK    L+ G  QRFCQQCSRFH LEEFD
Sbjct: 3   AICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.97

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=6.9e-44  Score=294.52  Aligned_cols=89  Identities=55%  Similarity=1.005  Sum_probs=80.6

Q ss_pred             CCCCCCcceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccccchhHHHHHHhHHHhhh
Q 016971           80 NNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRR  159 (379)
Q Consensus        80 ~~~~~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RR  159 (379)
                      +.|++.++||||||++||+.+|+||+||||||+|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus         3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR   82 (94)
T 1ul4_A            3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR   82 (94)
T ss_dssp             -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred             CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 016971          160 RKPQPDPLS  168 (379)
Q Consensus       160 Rk~q~~~~~  168 (379)
                      ||+++++..
T Consensus        83 Rk~~~~~~~   91 (94)
T 1ul4_A           83 RKSSGESGP   91 (94)
T ss_dssp             CSCCCC---
T ss_pred             ccCCCCcCC
Confidence            999999764

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=6e-42  Score=280.09  Aligned_cols=82  Identities=45%  Similarity=0.976  Sum_probs=78.9

Q ss_pred             CcceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccccchhHHHHHHhHHHhhhcCCCC
Q 016971           85 TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP  164 (379)
Q Consensus        85 ~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~q~  164 (379)
                      .++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++.
T Consensus         3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~   82 (88)
T 1ul5_A            3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   82 (88)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             CC
Q 016971          165 DP  166 (379)
Q Consensus       165 ~~  166 (379)
                      +.
T Consensus        83 ~~   84 (88)
T 1ul5_A           83 DK   84 (88)
T ss_dssp             SS
T ss_pred             cC
Confidence            64

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.97  E-value=3.4e-32  Score=208.82  Aligned_cols=59  Identities=64%  Similarity=1.186  Sum_probs=57.2

Q ss_pred             CCcceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccc
Q 016971           84 QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD  142 (379)
Q Consensus        84 ~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD  142 (379)
                      +.++||||||++||+.+|+||+||||||+|+||++|+++|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            46899999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	3e-45
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	2e-42
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	3e-30

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  148 bits (375), Expect = 3e-45
 Identities = 37/80 (46%), Positives = 56/80 (70%)

Query: 86  ASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGK 145
           A C V  C++D+S  + YH+RH+VC   +    V++ G+ +R+CQQC +FH L +FDEGK
Sbjct: 2   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61

Query: 146 RSCRKRLDGHNRRRRKPQPD 165
           RSCR++L+ HN RR++   D
Sbjct: 62  RSCRRKLERHNNRRKRKPVD 81

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  141 bits (356), Expect = 2e-42
 Identities = 48/78 (61%), Positives = 57/78 (73%)

Query: 88  CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRS 147
           C VD C +D+   + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+EFDE KRS
Sbjct: 4   CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 63

Query: 148 CRKRLDGHNRRRRKPQPD 165
           CR+RL GHN RRRK   +
Sbjct: 64  CRRRLAGHNERRRKSSGE 81

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  108 bits (271), Expect = 3e-30
 Identities = 38/56 (67%), Positives = 42/56 (75%)

Query: 87  SCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 142
            C VD C +DLS  +DYHRRHKVCE+HSK    L+ G  QRFCQQCSRFH LEEFD
Sbjct: 3   CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.97

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-42  Score=277.13  Aligned_cols=80  Identities=60%  Similarity=1.127  Sum_probs=78.4

Q ss_pred             cceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccccchhHHHHHHhHHHhhhcCCCCC
Q 016971           86 ASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD  165 (379)
Q Consensus        86 ~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~q~~  165 (379)
                      .+||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++|
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.1e-42  Score=279.57  Aligned_cols=83  Identities=45%  Similarity=0.947  Sum_probs=80.5

Q ss_pred             CcceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccccchhHHHHHHhHHHhhhcCCCC
Q 016971           85 TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP  164 (379)
Q Consensus        85 ~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~q~  164 (379)
                      .++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++
T Consensus         1 ~~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~   80 (86)
T d1ul5a_           1 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   80 (86)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 016971          165 DPL  167 (379)
Q Consensus       165 ~~~  167 (379)
                      +..
T Consensus        81 ~~~   83 (86)
T d1ul5a_          81 DKG   83 (86)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            864

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=2.4e-32  Score=206.62  Aligned_cols=57  Identities=67%  Similarity=1.223  Sum_probs=56.0

Q ss_pred             cceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccc
Q 016971           86 ASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD  142 (379)
Q Consensus        86 ~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD  142 (379)
                      .+||||||++||+.+|+|||||||||.|+||+.|+|+|++|||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            479999999999999999999999999999999999999999999999999999998