Citrus Sinensis ID: 017012

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
ccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MTMQRIISKSRLDAFASVFVTLHphetsallhsssCFFFILSAYFVVLplrdegaislglsklpglfvGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSssigylskleSLDAvssnakedpkaavdqgstansadwgdhgWFYVSVRMGFFLWVALLNLITISSTWARVIDVmdsesgsrlfgfigAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSkgiykeiprrpeelpplrkadsdprsgadgqtapaakvpsprsstsivkpHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
mtmqriisksrlDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSkgiykeiprrpeelpplrkadsdprsgadgqtapaakvpsprsstsiVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRffsvsllvffllwqsssIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIprrpeelpplrKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAgqltltgtsflllgll
**********RLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKL**************************ADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ************************************************IVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL*
*************AFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPL*************************************ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
********KSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESLD*******************ANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELP*******************************IVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
****RIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSI*********************************DWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPP*******************************VKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
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MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
297736512 503 unnamed protein product [Vitis vinifera] 0.978 0.737 0.744 1e-139
449516782 490 PREDICTED: uncharacterized protein LOC10 0.947 0.732 0.691 1e-137
449457421 490 PREDICTED: uncharacterized protein LOC10 0.947 0.732 0.691 1e-137
225448643 492 PREDICTED: uncharacterized protein LOC10 0.952 0.733 0.727 1e-134
392938140 507 plasma membrane ATP/ADP transporter TLC1 0.947 0.708 0.660 1e-128
42567662 496 TLC ATP/ADP transporter [Arabidopsis tha 0.952 0.727 0.664 1e-127
10176743 496 unnamed protein product [Arabidopsis tha 0.952 0.727 0.658 1e-126
30680874 511 TLC ATP/ADP transporter [Arabidopsis tha 0.952 0.706 0.658 1e-126
30680867469 TLC ATP/ADP transporter [Arabidopsis tha 0.952 0.769 0.658 1e-126
297806531 499 hypothetical protein ARALYDRAFT_487324 [ 0.926 0.703 0.679 1e-125
>gi|297736512|emb|CBI25383.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/372 (74%), Positives = 309/372 (83%), Gaps = 1/372 (0%)

Query: 8   SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
           ++S L    S+FVT+HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3   ARSYLHGILSMFVTVHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query: 68  VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLS-KLE 126
           VGSL LTL+AAPVSTLIFSLPNLSKAKALVLIHRFFSVSL+VFF+LW SSS G+ S K +
Sbjct: 63  VGSLALTLVAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLVVFFVLWHSSSAGHSSSKWK 122

Query: 127 SLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWAR 186
             D VSS  KED +  V Q    +S  W  HGWFYV VR+G FLWV+LLNLITISSTWAR
Sbjct: 123 GSDFVSSTLKEDSEVDVSQPGAEHSVSWDVHGWFYVLVRIGLFLWVSLLNLITISSTWAR 182

Query: 187 VIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGI 246
           +IDVMDSESG RLFGFIGAGATLGQLFGSLFA GMA+LGP+LLLFAA LMELAAQSSKGI
Sbjct: 183 IIDVMDSESGLRLFGFIGAGATLGQLFGSLFATGMAWLGPFLLLFAALLMELAAQSSKGI 242

Query: 247 YKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIF 306
            + I    EE+  +RKAD D ++ ADGQ AP  K  SP+S TS++ P +WA+LDGLRLI 
Sbjct: 243 IRHISHTSEEMSLIRKADPDQQNEADGQAAPVKKGSSPKSPTSLMNPQIWAMLDGLRLIL 302

Query: 307 SSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQL 366
           SS YLL VSLFLWLSAVVSSFFYFQKVTVIAMTVS+ + RR+L A+INSFIAVFILAGQL
Sbjct: 303 SSTYLLYVSLFLWLSAVVSSFFYFQKVTVIAMTVSTPVERRKLFAQINSFIAVFILAGQL 362

Query: 367 TLTGTSFLLLGL 378
           TLTG    + G+
Sbjct: 363 TLTGRILTIAGV 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449516782|ref|XP_004165425.1| PREDICTED: uncharacterized protein LOC101229022 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457421|ref|XP_004146447.1| PREDICTED: uncharacterized protein LOC101212005 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225448643|ref|XP_002279449.1| PREDICTED: uncharacterized protein LOC100258787 [Vitis vinifera] Back     alignment and taxonomy information
>gi|392938140|gb|AFM94007.1| plasma membrane ATP/ADP transporter TLC1 [Beta vulgaris] Back     alignment and taxonomy information
>gi|42567662|ref|NP_196150.2| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003472|gb|AED90855.1| TLC ATP/ADP transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10176743|dbj|BAB09974.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30680874|ref|NP_850772.1| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003473|gb|AED90856.1| TLC ATP/ADP transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30680867|ref|NP_850771.1| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003471|gb|AED90854.1| TLC ATP/ADP transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806531|ref|XP_002871149.1| hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata] gi|297316986|gb|EFH47408.1| hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
TAIR|locus:2153489 511 AT5G05310 [Arabidopsis thalian 0.910 0.675 0.629 9e-109
TAIR|locus:2153489 AT5G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 226/359 (62%), Positives = 262/359 (72%)

Query:     8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
             ++ RLDA  S  VT+HPHE  ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct:     3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query:    68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRXXXXXXXXXXXXXXXXXIGYLSKLES 127
             VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHR                 +   S  ES
Sbjct:    63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFL------LWMASPTES 116

Query:   128 LDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARV 187
                 S +A E      + G+ A +  W +HGWFY+SVR+GFFLWVALLNL+ ISSTWAR+
Sbjct:   117 N---SKDAVEAASGLTNDGANA-ATGWDNHGWFYISVRVGFFLWVALLNLVAISSTWARI 172

Query:   188 IDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIY 247
             IDVMD +SG+RLFGF+GAGATLGQLFGS+FAA  A++GPYLLLFAA LME AAQSSKGI 
Sbjct:   173 IDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQSSKGIT 232

Query:   248 KEIXXXXXXXXXXXKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWAILDGLR 303
              +I             D+D  R      T+P   + KV SP+S  S  +P  WAILDG+R
Sbjct:   233 NDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWAILDGMR 292

Query:   304 LIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFIL 362
             LI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+AVFIL
Sbjct:   293 LILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFVAVFIL 351


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      379       335   0.00092  116 3  11 22  0.46    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  193 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.83u 0.12s 24.95t   Elapsed:  00:00:01
  Total cpu time:  24.83u 0.12s 24.95t   Elapsed:  00:00:01
  Start:  Fri May 10 07:20:55 2013   End:  Fri May 10 07:20:56 2013
GO:0005471 "ATP:ADP antiporter activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029415001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (503 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
COG3202 509 COG3202, COG3202, ATP/ADP translocase [Energy prod 3e-07
>gnl|CDD|225743 COG3202, COG3202, ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information 
 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 58/399 (14%), Positives = 114/399 (28%), Gaps = 84/399 (21%)

Query: 2   TMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDE------GA 55
            M     +       S    +  +E    L  +  FF IL  Y ++  L+D       GA
Sbjct: 1   MMSTSEEEKYFSKLRSRLWPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGA 60

Query: 56  ISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF-FLLW 114
            S+   K  G+   ++I T+I   +  +      L++ K   +I  FF     +F F+++
Sbjct: 61  ESISFLKTWGVLPSAVIFTIIYQKLLNI------LTREKVFYIILGFFLGFFALFAFVIY 114

Query: 115 QSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHG-----WFYVSVR---- 165
                                   P   +       S D          WF + V     
Sbjct: 115 ------------------------PYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSY 150

Query: 166 MGFFLWVALLNLITISST-WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL 224
             F++   L   + +S   W    ++   E   R +   G GA +  L      + ++  
Sbjct: 151 SLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210

Query: 225 GPYLLLFAACLM------------ELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGAD 272
              L      L+             +A    + I + +   P      +K     +    
Sbjct: 211 RDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKL- 269

Query: 273 GQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQK 332
                                    +++  ++I  S YL +++L +    V  +      
Sbjct: 270 ------------------------GLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVW 305

Query: 333 VTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT 371
            + I     ++      +     +  V  L   L     
Sbjct: 306 KSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSN 344

Length = 509

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 379
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 100.0
PF03219 491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 100.0
COG3202 509 ATP/ADP translocase [Energy production and convers 100.0
PRK11195 393 lysophospholipid transporter LplT; Provisional 99.35
TIGR00900365 2A0121 H+ Antiporter protein. 99.35
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.26
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.22
PRK03545390 putative arabinose transporter; Provisional 99.21
PRK10054395 putative transporter; Provisional 99.19
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.17
PRK09874408 drug efflux system protein MdtG; Provisional 99.16
TIGR00893 399 2A0114 d-galactonate transporter. 99.15
TIGR00882 396 2A0105 oligosaccharide:H+ symporter. 99.12
PRK09528 420 lacY galactoside permease; Reviewed 99.09
PRK11652394 emrD multidrug resistance protein D; Provisional 99.07
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.07
PRK11902 402 ampG muropeptide transporter; Reviewed 99.05
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.05
PRK10504 471 putative transporter; Provisional 99.05
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.05
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 99.03
PRK11646400 multidrug resistance protein MdtH; Provisional 99.03
PRK11010 491 ampG muropeptide transporter; Validated 99.01
TIGR00901356 2A0125 AmpG-related permease. 99.01
PRK11663 434 regulatory protein UhpC; Provisional 98.99
PRK10213394 nepI ribonucleoside transporter; Reviewed 98.98
PRK10489 417 enterobactin exporter EntS; Provisional 98.98
TIGR00891405 2A0112 putative sialic acid transporter. 98.97
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.97
TIGR00897402 2A0118 polyol permease family. This family of prot 98.95
PRK14995 495 methyl viologen resistance protein SmvA; Provision 98.94
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.94
PRK11128 382 putative 3-phenylpropionic acid transporter; Provi 98.94
PRK15403413 multidrug efflux system protein MdtM; Provisional 98.93
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 98.91
TIGR00895398 2A0115 benzoate transport. 98.91
TIGR00902 382 2A0127 phenyl proprionate permease family protein. 98.9
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 98.89
KOG2615 451 consensus Permease of the major facilitator superf 98.89
PRK10091382 MFS transport protein AraJ; Provisional 98.88
PRK11273 452 glpT sn-glycerol-3-phosphate transporter; Provisio 98.88
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 98.86
PRK12307 426 putative sialic acid transporter; Provisional 98.85
COG2814 394 AraJ Arabinose efflux permease [Carbohydrate trans 98.84
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 98.83
PF01306 412 LacY_symp: LacY proton/sugar symporter; InterPro: 98.82
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 98.81
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 98.81
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 98.8
PRK11043401 putative transporter; Provisional 98.8
PRK09556 467 uhpT sugar phosphate antiporter; Reviewed 98.77
PRK12382392 putative transporter; Provisional 98.75
PRK03633381 putative MFS family transporter protein; Provision 98.74
PLN00028 476 nitrate transmembrane transporter; Provisional 98.74
PRK05122399 major facilitator superfamily transporter; Provisi 98.71
TIGR00792 437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 98.68
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 98.68
PRK03699394 putative transporter; Provisional 98.67
PRK10133 438 L-fucose transporter; Provisional 98.66
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.65
TIGR00894 465 2A0114euk Na(+)-dependent inorganic phosphate cotr 98.64
TIGR00892 455 2A0113 monocarboxylate transporter 1. 98.64
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 98.58
PRK09705393 cynX putative cyanate transporter; Provisional 98.58
PRK03893 496 putative sialic acid transporter; Provisional 98.54
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 98.53
PRK15011393 sugar efflux transporter B; Provisional 98.53
TIGR00805 633 oat sodium-independent organic anion transporter. 98.51
PRK10429 473 melibiose:sodium symporter; Provisional 98.5
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 98.5
TIGR00889418 2A0110 nucleoside transporter. This family of prot 98.49
TIGR00896355 CynX cyanate transporter. This family of proteins 98.48
TIGR02718 390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 98.47
PRK09669 444 putative symporter YagG; Provisional 98.46
TIGR00879 481 SP MFS transporter, sugar porter (SP) family. This 98.44
TIGR00898 505 2A0119 cation transport protein. 98.43
PRK11462 460 putative transporter; Provisional 98.4
PRK10406432 alpha-ketoglutarate transporter; Provisional 98.37
PRK15075434 citrate-proton symporter; Provisional 98.35
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 98.29
PRK10642 490 proline/glycine betaine transporter; Provisional 98.27
PRK09584 500 tppB putative tripeptide transporter permease; Rev 98.26
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 98.23
PRK10207 489 dipeptide/tripeptide permease B; Provisional 98.2
KOG2325 488 consensus Predicted transporter/transmembrane prot 98.19
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 98.17
PRK09952438 shikimate transporter; Provisional 98.17
PF13347 428 MFS_2: MFS/sugar transport protein 98.13
TIGR00880141 2_A_01_02 Multidrug resistance protein. 98.11
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 98.08
PRK15462 493 dipeptide/tripeptide permease D; Provisional 98.08
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 98.08
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 98.06
PRK03893496 putative sialic acid transporter; Provisional 98.01
PRK09848 448 glucuronide transporter; Provisional 98.01
PRK10489417 enterobactin exporter EntS; Provisional 97.98
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 97.94
PRK10077 479 xylE D-xylose transporter XylE; Provisional 97.94
PRK05122399 major facilitator superfamily transporter; Provisi 97.93
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 97.91
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 97.9
KOG2816 463 consensus Predicted transporter ADD1 (major facili 97.88
KOG1330 493 consensus Sugar transporter/spinster transmembrane 97.88
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 97.84
TIGR00893399 2A0114 d-galactonate transporter. 97.76
COG2211 467 MelB Na+/melibiose symporter and related transport 97.75
PRK09874408 drug efflux system protein MdtG; Provisional 97.7
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 97.69
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 97.69
TIGR00898505 2A0119 cation transport protein. 97.68
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 97.66
PRK12307426 putative sialic acid transporter; Provisional 97.64
PRK15011393 sugar efflux transporter B; Provisional 97.63
TIGR00895398 2A0115 benzoate transport. 97.62
PRK09705393 cynX putative cyanate transporter; Provisional 97.61
TIGR00887 502 2A0109 phosphate:H+ symporter. This model represen 97.61
PRK12382392 putative transporter; Provisional 97.6
PRK09528420 lacY galactoside permease; Reviewed 97.6
PRK10077479 xylE D-xylose transporter XylE; Provisional 97.58
PRK09952438 shikimate transporter; Provisional 97.56
PRK11902402 ampG muropeptide transporter; Reviewed 97.54
PRK10406432 alpha-ketoglutarate transporter; Provisional 97.51
PRK11010491 ampG muropeptide transporter; Validated 97.5
PRK03699394 putative transporter; Provisional 97.48
KOG2533 495 consensus Permease of the major facilitator superf 97.47
TIGR00889418 2A0110 nucleoside transporter. This family of prot 97.46
TIGR00891405 2A0112 putative sialic acid transporter. 97.44
PTZ00207 591 hypothetical protein; Provisional 97.42
PRK03633381 putative MFS family transporter protein; Provision 97.41
TIGR00900365 2A0121 H+ Antiporter protein. 97.41
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 97.4
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 97.39
TIGR00902382 2A0127 phenyl proprionate permease family protein. 97.38
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 97.38
KOG2532 466 consensus Permease of the major facilitator superf 97.37
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 97.36
TIGR00897402 2A0118 polyol permease family. This family of prot 97.35
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 97.35
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 97.31
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 97.3
PF03209 403 PUCC: PUCC protein; InterPro: IPR004896 This prote 97.3
KOG3764 464 consensus Vesicular amine transporter [Intracellul 97.28
PRK10642490 proline/glycine betaine transporter; Provisional 97.25
PRK03545390 putative arabinose transporter; Provisional 97.24
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 97.22
PRK11663434 regulatory protein UhpC; Provisional 97.15
TIGR00892455 2A0113 monocarboxylate transporter 1. 97.12
PRK15075434 citrate-proton symporter; Provisional 97.11
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 97.06
PF11700 477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 97.05
PRK15402406 multidrug efflux system translocase MdfA; Provisio 97.04
TIGR00896355 CynX cyanate transporter. This family of proteins 97.03
PRK09669444 putative symporter YagG; Provisional 97.01
TIGR00788 468 fbt folate/biopterin transporter. The only functio 97.0
COG0738 422 FucP Fucose permease [Carbohydrate transport and m 96.99
PF13347428 MFS_2: MFS/sugar transport protein 96.99
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 96.95
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 96.9
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 96.86
PRK10504471 putative transporter; Provisional 96.83
TIGR00881379 2A0104 phosphoglycerate transporter family protein 96.83
PLN00028476 nitrate transmembrane transporter; Provisional 96.83
PRK10429473 melibiose:sodium symporter; Provisional 96.79
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 96.75
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 96.73
PRK09848448 glucuronide transporter; Provisional 96.72
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 96.67
COG2211467 MelB Na+/melibiose symporter and related transport 96.65
PRK10091382 MFS transport protein AraJ; Provisional 96.63
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 96.62
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 96.57
KOG0569485 consensus Permease of the major facilitator superf 96.51
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 96.44
PRK10054395 putative transporter; Provisional 96.41
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 96.38
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 96.32
PRK10473392 multidrug efflux system protein MdtL; Provisional 96.25
TIGR01272310 gluP glucose/galactose transporter. Disruption of 96.2
PRK11646400 multidrug resistance protein MdtH; Provisional 96.11
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 96.04
PRK11043401 putative transporter; Provisional 95.95
PRK11195393 lysophospholipid transporter LplT; Provisional 95.89
PRK10213394 nepI ribonucleoside transporter; Reviewed 95.74
TIGR00901356 2A0125 AmpG-related permease. 95.73
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 95.72
KOG3626 735 consensus Organic anion transporter [Secondary met 95.7
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 95.65
PRK14995495 methyl viologen resistance protein SmvA; Provision 95.59
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 95.57
KOG0569 485 consensus Permease of the major facilitator superf 95.3
COG2270438 Permeases of the major facilitator superfamily [Ge 95.18
PRK11462460 putative transporter; Provisional 95.1
TIGR00788468 fbt folate/biopterin transporter. The only functio 95.01
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 95.0
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 94.9
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 94.86
PRK11652394 emrD multidrug resistance protein D; Provisional 94.7
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 94.69
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 94.35
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 94.11
KOG0637 498 consensus Sucrose transporter and related proteins 94.1
KOG0254 513 consensus Predicted transporter (major facilitator 94.02
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 92.99
PF1283277 MFS_1_like: MFS_1 like family 92.45
PRK10133438 L-fucose transporter; Provisional 92.26
COG2270 438 Permeases of the major facilitator superfamily [Ge 92.15
TIGR01272310 gluP glucose/galactose transporter. Disruption of 91.9
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 91.68
COG0477338 ProP Permeases of the major facilitator superfamil 90.55
PRK09584500 tppB putative tripeptide transporter permease; Rev 90.12
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 89.89
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 88.87
PRK15403413 multidrug efflux system protein MdtM; Provisional 88.77
PF00083 451 Sugar_tr: Sugar (and other) transporter; InterPro: 88.76
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 88.09
KOG0254513 consensus Predicted transporter (major facilitator 87.57
PF06963 432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 87.07
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 85.6
COG2807 395 CynX Cyanate permease [Inorganic ion transport and 84.33
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 82.17
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 81.91
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 81.15
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 81.13
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information 
Probab=100.00  E-value=5.9e-60  Score=483.95  Aligned_cols=313  Identities=15%  Similarity=0.183  Sum_probs=264.3

Q ss_pred             cCcCchhHHHHHHHHHHHHHHHHHHhhhccchhhcc---cCccchhHHHHHH-HHHHHHHHHHHHHhhcCCCCCchhHHH
Q 017012           22 LHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS---LGLSKLPGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALV   97 (379)
Q Consensus        22 i~~~E~~~~l~~~l~~F~il~~y~ilrpird~l~vs---~Gae~lp~l~~~~-~~~~ll~~~iy~~L~~~~r~~r~rv~~   97 (379)
                      |||+|.+|++++++++||++++|+++||+||+++++   .|+|.+||+|+.+ .|+.++++|+|+|++|  |++|+++++
T Consensus         1 ~~~~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~--~~~~~~lf~   78 (472)
T TIGR00769         1 IEVHELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN--ILSKEALFY   78 (472)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHhHH
Confidence            699999999999999999999999999999999996   5999999999966 7788888999999999  999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 017012           98 LIHRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL  177 (379)
Q Consensus        98 ~~~~~f~~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~  177 (379)
                      +++.+|+.+|++|+++++|.          +|.+|||..+|.++...++...++ .-+.++|.+.    +||+|.|+||+
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~----------~~~~~p~~~~~~~~~~~~~~~~~~-i~~~~~W~~~----~FYv~~elw~~  143 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPL----------SDLLHPTALADKLLSLLPPGFMGF-IAILRIWSFA----LFYVMAELWGS  143 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcc----------hhhcCCcHHHHHHHhhcchhhHHH-HHHHhhhhHH----HHHHHHHHHHH
Confidence            99999999999999999887          499999988775555443222221 1125889987    89999999999


Q ss_pred             HHHH-HHHHHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHHH--------HhHH------HHHHHHHHHHHHHHH
Q 017012          178 ITIS-STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF--------LGPY------LLLFAACLMELAAQS  242 (379)
Q Consensus       178 ~~~s-lfW~~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~--------~g~~------lll~aa~ll~l~~~~  242 (379)
                      +++| +||+++||+|++|||||+||++++|+|+|+++||.++.++++        .+++      ++.++++++++++.+
T Consensus       144 ~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  223 (472)
T TIGR00769       144 VVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILL  223 (472)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 999999999999999999999999999999999999999872        1222      445555666666666


Q ss_pred             HHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHH
Q 017012          243 SKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSA  322 (379)
Q Consensus       243 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~S~yL~~i~~~v~l~~  322 (379)
                      .+++.++..+     +        |+.. +..+            +++++++|+|+.||+|.+++||||++|++++++|+
T Consensus       224 ~~~l~~~~~~-----~--------~~~~-~~~~------------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~  277 (472)
T TIGR00769       224 YWWVNRNVLT-----D--------PRSY-NPAL------------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYG  277 (472)
T ss_pred             HHHHHhcccC-----C--------cccc-chhh------------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            6666544321     1        1100 0000            01223448899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 017012          323 VVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL  378 (379)
Q Consensus       323 ~~~~lv~~~~~~~v~~~~~~~~~~taf~G~~~~~~gv~~l~~qlf~t~~llrrlG~  378 (379)
                      +++|++|++||+++++.|||++|+++|||.++.++|++++++|++. ++++||+|.
T Consensus       278 ~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw  332 (472)
T TIGR00769       278 ISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGW  332 (472)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH
Confidence            9999999999999999999999999999999999999999999999 999999995

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 99.39
1pw4_A 451 Glycerol-3-phosphate transporter; transmembrane, i 99.32
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 99.12
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 98.82
2cfq_A417 Lactose permease; transport, transport mechanism, 98.65
2xut_A 524 Proton/peptide symporter family protein; transport 98.16
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 98.11
2cfq_A417 Lactose permease; transport, transport mechanism, 97.8
4gc0_A 491 D-xylose-proton symporter; MFS, transport protein; 97.52
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 97.5
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 97.37
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 97.2
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 95.46
2xut_A524 Proton/peptide symporter family protein; transport 90.63
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
Probab=99.39  E-value=5.7e-10  Score=109.33  Aligned_cols=269  Identities=9%  Similarity=-0.025  Sum_probs=163.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccchhhcccC--ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 017012           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (379)
Q Consensus        26 E~~~~l~~~l~~F~il~~y~ilrpird~l~vs~G--ae~lp~l~~~~~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f  103 (379)
                      ....+..+.+.+|+..+.+++.-|+-+.+.-..|  .+++-++.........+..|+.|+++|  |++||+++.+....+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLY  101 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhcchHHHHHHHHHH
Confidence            3445566666677777777777776665444443  445566666667788899999999999  999999998888777


Q ss_pred             HHHHHHHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 017012          104 SVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISST  183 (379)
Q Consensus       104 ~~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~~slf  183 (379)
                      ++..++++.... . .                  +              .|     .+. +.|.   ...+.........
T Consensus       102 ~~~~~~~~~~~~-~-~------------------~--------------~~-----~l~-~~~~---l~G~~~~~~~~~~  138 (438)
T 3o7q_A          102 ALGAALFWPAAE-I-M------------------N--------------YT-----LFL-VGLF---IIAAGLGCLETAA  138 (438)
T ss_dssp             HHHHHHHHHHHH-T-T------------------C--------------HH-----HHH-HHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccc-c-c------------------c--------------HH-----HHH-HHHH---HHHhhHHHhhhhH
Confidence            766666543211 1 0                  0              23     222 1122   2333334445566


Q ss_pred             HHHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHH-HH-hH------------------------H--HHHHHHHH
Q 017012          184 WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FL-GP------------------------Y--LLLFAACL  235 (379)
Q Consensus       184 W~~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~-g~------------------------~--lll~aa~l  235 (379)
                      -.+++|.++.+|+.+.+|+..++.++|.++|+.+++.+. .. +.                        +  .+++.++.
T Consensus       139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  218 (438)
T 3o7q_A          139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI  218 (438)
T ss_dssp             HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHH
Confidence            788999999999999999999999999999999988876 32 21                        2  33332322


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHH
Q 017012          236 MELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVS  315 (379)
Q Consensus       236 l~l~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~S~yL~~i~  315 (379)
                      ..+..... ...+..++.             ++.+   .                 ++.+.+..+.++.++++|.+...+
T Consensus       219 ~~~~~~~~-~~~~~p~~~-------------~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  264 (438)
T 3o7q_A          219 VLLVALLI-MLTKFPALQ-------------SDNH---S-----------------DAKQGSFSASLSRLARIRHWRWAV  264 (438)
T ss_dssp             HHHHHHHH-HHCCCCCCT-------------TTCC---C-----------------CSSTTSHHHHHHHHTTCSHHHHHH
T ss_pred             HHHHHHHH-HHHcCCccc-------------cccc---c-----------------cccccchhhhHHHHHhChHHHHHH
Confidence            22222221 111111100             0000   0                 000113567788899999998877


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 017012          316 LFLWLSAVVSSFFYFQKVTV-IAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG  377 (379)
Q Consensus       316 ~~v~l~~~~~~lv~~~~~~~-v~~~~~~~~~~taf~G~~~~~~gv~~l~~qlf~t~~llrrlG  377 (379)
                      +..+++.............+ .++.+..+.+..   |.+....++..++.+. +.+++.+|+|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~-~~g~l~~r~~  323 (438)
T 3o7q_A          265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRF-TGTWLISRFA  323 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHH---HHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            77776666544444333444 556555444444   4555555666666555 4588888876
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 99.28
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 98.78
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 97.91
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 97.65
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.1e-09  Score=104.24  Aligned_cols=254  Identities=9%  Similarity=-0.060  Sum_probs=141.4

Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccchhhhchhccccCCccCC
Q 017012           59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKED  138 (379)
Q Consensus        59 Gae~lp~l~~~~~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f~~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (379)
                      ..+++.++.....+...+..++.|+++|  |+|||+++.+.....++..++++++.....                    
T Consensus        57 s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  114 (447)
T d1pw4a_          57 SRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVMLFMGFVPWATS--------------------  114 (447)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHHHHhhccccchhhh--------------------
Confidence            4566777777777788899999999999  999999998877777666666665332110                    


Q ss_pred             chhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHH
Q 017012          139 PKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFA  218 (379)
Q Consensus       139 ~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~~slfW~~~~di~~~~eakR~fgligag~~lG~I~G~~l~  218 (379)
                            .       .|     .+. +.|.   ...+...........+++|.++.+|+.+.+|+.+.+.++|.++|+.++
T Consensus       115 ------~-------~~-----~~~-~~~~---~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  172 (447)
T d1pw4a_         115 ------S-------IA-----VMF-VLLF---LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF  172 (447)
T ss_dssp             ------S-------SS-----HHH-HHHH---HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             ------h-------HH-----HHH-HHHH---HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhh
Confidence                  0       22     111 1122   123333344456778999999999999999999999999999999888


Q ss_pred             HHHH-HHhH--HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcc
Q 017012          219 AGMA-FLGP--YLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHL  295 (379)
Q Consensus       219 ~~la-~~g~--~lll~aa~ll~l~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (379)
                      +.+. ..+.  +.+.+.+++..+.......+.+...+..  .     .+...+.+++..+   ..     +  ++.++..
T Consensus       173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~---~~-----~--~~~~~~~  235 (447)
T d1pw4a_         173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC--G-----LPPIEEYKNDYPD---DY-----N--EKAEQEL  235 (447)
T ss_dssp             HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT--C-----CCSCTTTCCC-----------------------
T ss_pred             hhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhc--c-----cchhhhhhhhccc---ch-----h--hcccccc
Confidence            7765 3332  2333323222233333333322221110  0     0000010000000   00     0  0001111


Q ss_pred             cchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017012          296 WAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL  375 (379)
Q Consensus       296 ~~~~~g~~~i~~S~yL~~i~~~v~l~~~~~~lv~~~~~~~v~~~~~~~~~~taf~G~~~~~~gv~~l~~qlf~t~~llrr  375 (379)
                      .......+.++++|.+..++...+++.............+..+....+.+..   +......++..++.+.+ .|++.+|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~g~~~~~  311 (447)
T d1pw4a_         236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLL-CGWMSDK  311 (447)
T ss_dssp             CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             chhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchh---hhhhhcchhhhhhhhhh-hhhhhhh
Confidence            1234456788899999888877777666555444444444444444444444   33444444455444443 4677766


Q ss_pred             hC
Q 017012          376 LG  377 (379)
Q Consensus       376 lG  377 (379)
                      +|
T Consensus       312 ~~  313 (447)
T d1pw4a_         312 VF  313 (447)
T ss_dssp             TS
T ss_pred             cc
Confidence            64
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure