Citrus Sinensis ID: 017031

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MIASASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
ccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccEEEcccccccccccccEEEcccccccccEEEEEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEEcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEccccccccccccccccccc
ccccHccccccccccccccccEEEEcccEEccccHHHHHHHHHHHHHHHHHHHcccccccccHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHcccEEEEEcccccccccccEEEccccccccccEEEEEEEEcccccccccccccccHccHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHccccccEEEccccccEEEccHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEccccHHHHHHHHHHHHcccccccccccEEccccEEccccccccccccccccccHHHHHHcccccccccEEEEEEccccccEEcccccHHcccccccccccc
miasasplipitsvlpqplpsvLALTKIEIslgggryqNCLKEIRSracdvedtekgIKIEKKDWQKLHLHIAsfnnfptaaglaSSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWilgkegngsdslaVQLVDEEHWNDLVIIIAVVSSrqketssttgmreSVETSLLLQHRAKEVVPKRIVQMEEAiqnhdfssfaqltcadsnqfhavcldtsppifymndtsHRIISYVERwnrsvgspqvaytfdagpnaVLIARNRKIATELLQRLLfffppnsetdlnsyvlgdksilrdagidgmkdiealplppeinnisaqkysgdvnyfictrpgggpvllsddskallnpksglpkea
miasasplipitsvlpqplpSVLALTKIEISLGGGRYQNCLKEIRSracdvedtekGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVssrqketssttgmresvetslllqhrakEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSddskallnpksglpkea
MIASASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTaaglassaagfaCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
********IPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKE******AIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVV*********************LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVL*******************
*IASASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRAC**EDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQ************VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGM***************SAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLP***
MIASASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVS*****************TSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
MI***SPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR*************VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKS*L****
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MIASASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q54YQ9391 Diphosphomevalonate decar yes no 0.830 0.803 0.441 2e-73
P53602400 Diphosphomevalonate decar yes no 0.867 0.82 0.461 3e-71
Q99JF5401 Diphosphomevalonate decar yes no 0.857 0.807 0.467 7e-71
Q5U403400 Diphosphomevalonate decar yes no 0.841 0.795 0.459 2e-70
Q62967401 Diphosphomevalonate decar yes no 0.857 0.807 0.458 8e-70
Q0P570400 Diphosphomevalonate decar yes no 0.859 0.812 0.440 5e-68
P32377396 Diphosphomevalonate decar yes no 0.851 0.813 0.439 1e-63
Q6BY07388 Diphosphomevalonate decar yes no 0.835 0.814 0.453 1e-63
Q751D8397 Diphosphomevalonate decar yes no 0.859 0.818 0.448 2e-63
O13963393 Diphosphomevalonate decar yes no 0.817 0.786 0.433 6e-62
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1 Back     alignment and function desciption
 Score =  276 bits (706), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/344 (44%), Positives = 216/344 (62%), Gaps = 30/344 (8%)

Query: 36  RYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLV 95
           RYQN LK IRSRA  + D            +K  +HIAS NNFPTAAGLASSA+G+ CLV
Sbjct: 74  RYQNVLKMIRSRATKLMD------------KKHCVHIASINNFPTAAGLASSASGYCCLV 121

Query: 96  FSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW 155
           F+LA++  +      +S IAR GSGSACRS++GGFVKW +G + +GSDS+AVQ+  E HW
Sbjct: 122 FTLAQMYGV---DGDISGIARLGSGSACRSMYGGFVKWEMGTKDDGSDSIAVQVQPESHW 178

Query: 156 NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSF 215
            D+ II+ VV+ ++KETSST GM++S  TS++++ R    VP R+  +EEAI   DF +F
Sbjct: 179 PDMNIIVLVVNDKKKETSSTDGMQKSAATSVMMKERCAVTVPNRMRDIEEAINKKDFQTF 238

Query: 216 AQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 275
             +T  DS+ FH VC  T+PPI+Y+NDTS  I++ + R+N+  GS + AYTFDAGPNA  
Sbjct: 239 GDITMKDSDDFHEVCATTTPPIYYLNDTSRYIMNLIHRYNKLSGSIKCAYTFDAGPNAC- 297

Query: 276 IARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP--LPPEI 333
           I    +  TE+L   +  FP +   D+ +Y  G K  +    I+     E L     P+ 
Sbjct: 298 IYLPAESTTEVLSLFMKHFPGD---DMQTYYRGPKENI--PSIENFVPSEKLASLYTPDT 352

Query: 334 NNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 377
             +++ K      Y + T+ G GP +LS +S++L++  +GLPK+
Sbjct: 353 TFVNSLK------YILHTKVGPGPQILS-ESESLIDNTTGLPKQ 389
Performs the first committed step in the biosynthesis of isoprenes.
Dictyostelium discoideum (taxid: 44689)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1 Back     alignment and function description
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2 Back     alignment and function description
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1 Back     alignment and function description
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1 Back     alignment and function description
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1 Back     alignment and function description
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2 Back     alignment and function description
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
255560311415 diphosphomevalonate decarboxylase, putat 0.915 0.833 0.824 1e-167
164604978415 diphosphomevelonate decarboxylase [Hevea 0.915 0.833 0.818 1e-166
16417950415 mevalonate disphosphate decarboxylase [H 0.915 0.833 0.816 1e-165
224110186416 predicted protein [Populus trichocarpa] 0.915 0.831 0.818 1e-164
225464152422 PREDICTED: diphosphomevalonate decarboxy 0.936 0.838 0.797 1e-163
356575484421 PREDICTED: diphosphomevalonate decarboxy 0.933 0.838 0.797 1e-163
157042753406 mevalonate diphosphate decarboxylase [Ni 0.936 0.871 0.797 1e-163
224097622416 predicted protein [Populus trichocarpa] 0.915 0.831 0.813 1e-163
356536371420 PREDICTED: diphosphomevalonate decarboxy 0.933 0.840 0.794 1e-162
313507398421 mevalonate 5-diphosphate decarboxylase [ 0.920 0.826 0.808 1e-162
>gi|255560311|ref|XP_002521172.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] gi|223539619|gb|EEF41203.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/348 (82%), Positives = 324/348 (93%), Gaps = 2/348 (0%)

Query: 29  EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSA 88
           EISL GGRYQNCL+EIR+RACDVED EKGIKI KKDW+KLH+HIASFNNFPTAAGLASSA
Sbjct: 70  EISLSGGRYQNCLREIRARACDVEDKEKGIKIAKKDWEKLHVHIASFNNFPTAAGLASSA 129

Query: 89  AGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 148
           AGFACLVF+LAKLMN +E+ S+LSAIARQGSGSACRSLFGGFVKWI+GK  +GSDSLAVQ
Sbjct: 130 AGFACLVFALAKLMNAREDNSELSAIARQGSGSACRSLFGGFVKWIMGKVDDGSDSLAVQ 189

Query: 149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQ 208
           LVDE+HW+DLVIIIAVVSSRQKETSST+GMRESVETSLLLQHRAKEVVPKRI+QMEEAI 
Sbjct: 190 LVDEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPKRIIQMEEAIN 249

Query: 209 NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 268
             DF+SFAQ+TCADSNQFHAVCLDT PPIFYMNDTSHRIIS VE+WNRS  +PQVAYTFD
Sbjct: 250 KRDFASFAQITCADSNQFHAVCLDTCPPIFYMNDTSHRIISCVEKWNRSEETPQVAYTFD 309

Query: 269 AGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
           AGPNAVLIA+NRK A +LLQ+LL++FPPNS+TDLNSYVLGDKSIL+DAGI+ MKD+E+LP
Sbjct: 310 AGPNAVLIAQNRKTAVQLLQKLLYYFPPNSDTDLNSYVLGDKSILKDAGIEEMKDVESLP 369

Query: 329 LPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
            PPEI +  A ++ GDV+YFICTRPG GPVLL+D+S+ALLNP++GLPK
Sbjct: 370 APPEIKD--APRFKGDVSYFICTRPGRGPVLLTDESQALLNPQTGLPK 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|164604978|dbj|BAF98285.1| diphosphomevelonate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|16417950|gb|AAL18927.1|AF429386_1 mevalonate disphosphate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|224110186|ref|XP_002315441.1| predicted protein [Populus trichocarpa] gi|222864481|gb|EEF01612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225464152|ref|XP_002266399.1| PREDICTED: diphosphomevalonate decarboxylase [Vitis vinifera] gi|296087980|emb|CBI35263.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575484|ref|XP_003555870.1| PREDICTED: diphosphomevalonate decarboxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|157042753|gb|ABV02028.1| mevalonate diphosphate decarboxylase [Nicotiana langsdorffii x Nicotiana sanderae] Back     alignment and taxonomy information
>gi|224097622|ref|XP_002311015.1| predicted protein [Populus trichocarpa] gi|222850835|gb|EEE88382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356536371|ref|XP_003536712.1| PREDICTED: diphosphomevalonate decarboxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|313507398|gb|ADR65113.1| mevalonate 5-diphosphate decarboxylase [Catharanthus roseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2080265419 AT3G54250 [Arabidopsis thalian 0.920 0.830 0.744 4.9e-140
TAIR|locus:2064092412 MVD1 "mevalonate diphosphate d 0.902 0.827 0.719 1.4e-133
UNIPROTKB|P53602400 MVD "Diphosphomevalonate decar 0.867 0.82 0.438 5.2e-65
MGI|MGI:2179327401 Mvd "mevalonate (diphospho) de 0.862 0.812 0.444 1.1e-64
RGD|621292401 Mvd "mevalonate (diphospho) de 0.862 0.812 0.429 3.7e-64
UNIPROTKB|Q642E5401 Mvd "Mevalonate (Diphospho) de 0.862 0.812 0.429 3.7e-64
ZFIN|ZDB-GENE-041114-127400 zgc:100824 "zgc:100824" [Danio 0.841 0.795 0.430 6e-64
UNIPROTKB|Q0P570400 MVD "Diphosphomevalonate decar 0.857 0.81 0.416 1.8e-62
UNIPROTKB|E2QYJ9400 MVD "Uncharacterized protein" 0.849 0.802 0.430 1.8e-62
FB|FBgn0030683388 CG8239 [Drosophila melanogaste 0.822 0.801 0.422 1.3e-61
TAIR|locus:2080265 AT3G54250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1370 (487.3 bits), Expect = 4.9e-140, P = 4.9e-140
 Identities = 260/349 (74%), Positives = 299/349 (85%)

Query:    29 EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 88
             EISL G RYQNCL+EIR RA DVED EKGIKI KKDW+KL+LHIAS NNFPT        
Sbjct:    71 EISLSGSRYQNCLREIRGRAGDVEDMEKGIKIRKKDWEKLNLHIASHNNFPTAAGLASSA 130

Query:    89 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 148
                 CLVFSLAKLMN+ E+ S LSAIARQGSGSACRSLFGGFVKW +G + +GSDS+AVQ
Sbjct:   131 AGFACLVFSLAKLMNVDEDPSHLSAIARQGSGSACRSLFGGFVKWTMGSKEDGSDSVAVQ 190

Query:   149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQ 208
             L DE+HW+DLVIIIAVVSSRQKETSST+GMRESVETSLLLQHRAKEVVPKRI+QMEEAI+
Sbjct:   191 LADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPKRILQMEEAIK 250

Query:   209 NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 268
             N DF+SF QLTC DSNQFHAVCLDTSPPIFYMNDTSHRIIS VE+WNRS G+PQVAYTFD
Sbjct:   251 NRDFASFTQLTCTDSNQFHAVCLDTSPPIFYMNDTSHRIISLVEKWNRSEGTPQVAYTFD 310

Query:   269 AGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
             AGPNAVLIARNRK+A +LLQ LL++FPP S+TD+ SYV+GD SIL++AG+DG   +E L 
Sbjct:   311 AGPNAVLIARNRKVAVQLLQGLLYYFPPKSDTDMKSYVVGDNSILKEAGLDGASGVENLQ 370

Query:   329 LPPEI-NNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
              PPEI +NI +Q   G+V+YFICTRPG GP++L D ++ALL+P++GLPK
Sbjct:   371 PPPEIKDNIGSQDQKGEVSYFICTRPGKGPIVLHDQTQALLDPETGLPK 419
GO:0004163 "diphosphomevalonate decarboxylase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA
TAIR|locus:2064092 MVD1 "mevalonate diphosphate decarboxylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P53602 MVD "Diphosphomevalonate decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2179327 Mvd "mevalonate (diphospho) decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621292 Mvd "mevalonate (diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q642E5 Mvd "Mevalonate (Diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-127 zgc:100824 "zgc:100824" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P570 MVD "Diphosphomevalonate decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYJ9 MVD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0030683 CG8239 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q751D8MVD1_ASHGO4, ., 1, ., 1, ., 3, 30.44850.85970.8186yesno
Q99JF5MVD1_MOUSE4, ., 1, ., 1, ., 3, 30.46720.85710.8079yesno
Q62967MVD1_RAT4, ., 1, ., 1, ., 3, 30.45860.85710.8079yesno
P32377MVD1_YEAST4, ., 1, ., 1, ., 3, 30.43900.85180.8131yesno
Q54YQ9MVD1_DICDI4, ., 1, ., 1, ., 3, 30.44180.83060.8030yesno
Q0P570MVD1_BOVIN4, ., 1, ., 1, ., 3, 30.44060.85970.8125yesno
P53602MVD1_HUMAN4, ., 1, ., 1, ., 3, 30.46150.86770.82yesno
Q6BY07MVD1_DEBHA4, ., 1, ., 1, ., 3, 30.45370.83590.8144yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.330.914
3rd Layer4.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0106013901
diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00060040
SubName- Full=Putative uncharacterized protein; (342 aa)
   • •• 0.946
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
•  • •• 0.939
estExt_Genewise1_v1.C_LG_III0996
hypothetical protein (493 aa)
     •• 0.904
estExt_Genewise1_v1.C_290342
SubName- Full=Putative uncharacterized protein; (496 aa)
     •  0.900
gw1.XV.832.1
hypothetical protein (236 aa)
     •  0.899
gw1.VII.3333.1
annotation not avaliable (311 aa)
     •  0.899
gw1.IV.3487.1
hypothetical protein (293 aa)
     •  0.899
gw1.II.860.1
hypothetical protein (306 aa)
     •  0.899
grail3.0137000601
hypothetical protein (134 aa)
     •  0.899
grail3.0045022601
hypothetical protein (259 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
PLN02407343 PLN02407, PLN02407, diphosphomevalonate decarboxyl 0.0
COG3407329 COG3407, MVD1, Mevalonate pyrophosphate decarboxyl 7e-69
TIGR01240305 TIGR01240, mevDPdecarb, diphosphomevalonate decarb 1e-65
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 2e-07
>gnl|CDD|178029 PLN02407, PLN02407, diphosphomevalonate decarboxylase Back     alignment and domain information 
 Score =  557 bits (1437), Expect = 0.0
 Identities = 233/285 (81%), Positives = 263/285 (92%), Gaps = 1/285 (0%)

Query: 23  LALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82
           L L   EISL GGRYQNCL+EIR+RA DVED EKGIKI KKDW+KLH+HIAS+NNFPTAA
Sbjct: 59  LWLNGKEISLSGGRYQNCLREIRARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAA 118

Query: 83  GLASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNG 141
           GLASSAAGFACLVF+LAKLMN+KE+   +LSAIARQGSGSACRSL+GGFVKW +GK+ +G
Sbjct: 119 GLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSACRSLYGGFVKWNMGKKEDG 178

Query: 142 SDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 201
           SDS+AVQL DE+HW+DLVIIIAVVSSRQKETSST+GMRESVETS LLQHRAKEVVPKRI+
Sbjct: 179 SDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRIL 238

Query: 202 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 261
           QMEEAI+N DF+SFA+LTCADSNQFHA CLDTSPPIFYMNDTS RIIS VE+WNRS G+P
Sbjct: 239 QMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTP 298

Query: 262 QVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYV 306
           QVAYTFDAGPNAVLIA NRK+A +LLQRLL++FPP+S+TDL+SYV
Sbjct: 299 QVAYTFDAGPNAVLIALNRKVAAQLLQRLLYYFPPSSDTDLSSYV 343

Length = 343
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|130307 TIGR01240, mevDPdecarb, diphosphomevalonate decarboxylase Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 100.0
PLN02407343 diphosphomevalonate decarboxylase 100.0
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 100.0
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 100.0
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 99.96
PRK01212301 homoserine kinase; Provisional 99.95
PTZ00299336 homoserine kinase; Provisional 99.94
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.93
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.93
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.93
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.92
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.92
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.92
PLN02451370 homoserine kinase 99.91
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.91
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.9
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.9
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.89
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.89
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.89
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.89
PTZ00298328 mevalonate kinase; Provisional 99.88
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.88
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.87
PRK03926302 mevalonate kinase; Provisional 99.87
PRK01123282 shikimate kinase; Provisional 99.87
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.85
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.85
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.84
COG1907312 Predicted archaeal sugar kinases [General function 99.84
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.84
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.82
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.81
PRK05905258 hypothetical protein; Provisional 99.8
PRK03817351 galactokinase; Provisional 99.79
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.76
PRK00555363 galactokinase; Provisional 99.76
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.75
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.74
PRK05322387 galactokinase; Provisional 99.73
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.7
PRK05101382 galactokinase; Provisional 99.65
PLN02677387 mevalonate kinase 99.59
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.51
COG0153390 GalK Galactokinase [Carbohydrate transport and met 99.46
PLN02521497 galactokinase 99.45
KOG1537355 consensus Homoserine kinase [Amino acid transport 99.39
COG2605333 Predicted kinase related to galactokinase and meva 99.35
PLN02865423 galactokinase 99.32
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.24
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.22
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 99.21
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.09
COG4542293 PduX Protein involved in propanediol utilization, 98.9
PTZ00290468 galactokinase; Provisional 98.89
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 98.79
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 95.58
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 93.21
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-93  Score=669.87  Aligned_cols=349  Identities=54%  Similarity=0.838  Sum_probs=317.9

Q ss_pred             CCCeeEEE--EecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCccc
Q 017031            6 SPLIPITS--VLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAG   83 (378)
Q Consensus         6 ~~~~~~t~--v~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaG   83 (378)
                      ..|+|.|+  +.++|++|++||||++++++++|+++|++++|++++..++++..+    +....+++||.|+||||+|||
T Consensus        44 D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q~cl~e~r~~~~d~~~~~~~~----~~~~~~~lHI~S~nNFPtAAG  119 (395)
T KOG2833|consen   44 DDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQRCLREIRRLARDREESEASL----PSNGPLKLHIASVNNFPTAAG  119 (395)
T ss_pred             ccceeeeeEeeccccccceeEECCceeccccHHHHHHHHHHHHHhhhhhhhhccc----CcCCCeeEEEEecCCCcchhh
Confidence            45666666  678889999999999999989999999999999998876655432    223468999999999999999


Q ss_pred             CccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEE
Q 017031           84 LASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIA  163 (378)
Q Consensus        84 LgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vil  163 (378)
                      |||||||+||+++||+++|+++.+++||+++||+||||||||+|||||.|.+|+.+||+||+++|+.|..|||+++++|+
T Consensus       120 LASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGSACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ilil  199 (395)
T KOG2833|consen  120 LASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGSACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILIL  199 (395)
T ss_pred             hhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCchhhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCch
Q 017031          164 VVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDT  243 (378)
Q Consensus       164 vv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~  243 (378)
                      |+++.+|+++||+|||++++||.++++|+++++++|+.+|.+||.++||+.|++++|+|||+|||+|++++||++|||+.
T Consensus       200 Vvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~  279 (395)
T KOG2833|consen  200 VVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDT  279 (395)
T ss_pred             EeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCCCCCCccccccCcchhhhhccCCCccc
Q 017031          244 SHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKD  323 (378)
Q Consensus       244 s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (378)
                      +++||+.||++|+..|.+.+|||||||||.++|+.+++..+ +++.+.+.|++..+|+ ..|..|+.+.++..+..    
T Consensus       280 S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~e~~~~-~l~~~~~~f~~~p~~d-k~y~~~~~~~~~~~~~~----  353 (395)
T KOG2833|consen  280 SWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLEENVSQ-LLAAVLKVFPPVPGWD-KTYGKGLLEQFKVAAES----  353 (395)
T ss_pred             hHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhhhhHHH-HHHHHHHhcCCCCCcc-ceeeeccccccCccccc----
Confidence            99999999999988899999999999999999999999997 9999999999999998 77888876555433222    


Q ss_pred             ccCCCCCcccc-cccccccCCCcceEEEecCCCCceecCCCcccccCCCCCCCC
Q 017031          324 IEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK  376 (378)
Q Consensus       324 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~~~g~~~  376 (378)
                             .+.+ .+..   .++|+|||+|+||.||+ |.+++++|||| .|+||
T Consensus       354 -------~~~~~~l~~---~~~vs~~I~t~vG~GP~-l~~~~~~Li~~-~GlPk  395 (395)
T KOG2833|consen  354 -------SSIKDSLGS---QGGVSYIILTRVGGGPK-LQEQNESLIDP-SGLPK  395 (395)
T ss_pred             -------cchhhhccc---cCCeeEEEEecCCCCCc-ccCchhhhcCC-CCCCC
Confidence                   1222 2332   39999999999999999 77788999998 59997

>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
3d4j_A400 Crystal Structure Of Human Mevalonate Diphosphate D 6e-71
3f0n_A414 Mus Musculus Mevalonate Pyrophosphate Decarboxylase 6e-70
1fi4_A416 The X-Ray Crystal Structure Of Mevalonate 5-Diphosp 7e-59
2hke_A380 Mevalonate Diphosphate Decarboxylase From Trypanoso 2e-42
3qt5_A332 Crystal Structure Of Staphylococcus Epidermidis Mev 3e-20
3qt8_A332 Crystal Structure Of Mutant S192a Staphylococcus Ep 6e-20
4dpw_A332 Crystal Structure Of Staphylococcus Epidermidis D28 3e-19
2hk2_A331 Crystal Structure Of Mevalonate Diphosphate Decarbo 5e-19
3lto_A323 Crystal Structure Of A Mevalonate Diphosphate Decar 3e-11
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate Decarboxylase Length = 400 Back     alignment and structure 
Iteration: 1

 Score =  264 bits (674), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 151/351 (43%), Positives = 202/351 (57%), Gaps = 23/351 (6%)
Query: 29  EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 88
           E  +G  R Q CL+EIR  A    ++  G  +         +H+AS NNFPT        
Sbjct: 71  EEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNFPTAAGLASSA 128
Query: 89  XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 148
               CL ++LA++  +   +S LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q
Sbjct: 129 AGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQ 185
Query: 149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQ 208
           +  E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP R+ +M   I+
Sbjct: 186 VAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIR 245
Query: 209 NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 268
             DF SFAQLT  DSNQFHA CLDT PPI Y+N  S RII  V R+N   G  +VAYTFD
Sbjct: 246 ERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKVAYTFD 305
Query: 269 AGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
           AGPNAV+   +  +A E +  +   FPP S                D  + G++ +   P
Sbjct: 306 AGPNAVIFTLDDTVA-EFVAAVWHGFPPGSNG--------------DTFLKGLQ-VRPAP 349
Query: 329 LPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 378
           L  E+   ++ +   G V Y I T+ G GP +L D    LL P  GLPK A
Sbjct: 350 LSAELQAALAMEPTPGGVKYIIVTQVGPGPQILDDPCAHLLGP-DGLPKPA 399
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase Length = 414 Back     alignment and structure
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate Decarboxylase At 2.3 Angstrom Resolution Length = 416 Back     alignment and structure
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma Brucei Length = 380 Back     alignment and structure
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Length = 332 Back     alignment and structure
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Complexed With Inhibitor 6- Fmvapp Length = 332 Back     alignment and structure
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a Mevalonate Diphosphate Decarboxylase Complexed With Mevalonate Diphosphate And Atpgs Length = 332 Back     alignment and structure
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase From Staphylococcus Aureus (Monoclinic Form) Length = 331 Back     alignment and structure
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate Decarboxylase From Legionella Pneumophila Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 1e-104
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 1e-98
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 5e-98
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 2e-64
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 7e-64
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 8e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 7e-06
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 1e-05
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 4e-05
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 6e-05
3k17_A365 LIN0012 protein; protein structure initiative II(P 3e-04
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 3e-04
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Length = 414 Back     alignment and structure
 Score =  312 bits (800), Expect = e-104
 Identities = 160/354 (45%), Positives = 210/354 (59%), Gaps = 21/354 (5%)

Query: 23  LALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82
           + L   E  +G  R Q CL+EIR  A     TE G  +         +H+AS NNFPTAA
Sbjct: 79  IWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSY--KVHVASVNNFPTAA 136

Query: 83  GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGS 142
           GLASSAAG+ACL ++LA++  ++ +   LS +AR+GSGSACRSL+GGFV+W +G++ +G 
Sbjct: 137 GLASSAAGYACLAYTLAQVYGVEGD---LSEVARRGSGSACRSLYGGFVEWQMGEQADGK 193

Query: 143 DSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 202
           DS+A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +
Sbjct: 194 DSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKE 253

Query: 203 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQ 262
           M   IQ  DF  FAQLT  DSNQFHA CLDT PPI Y+NDTS RII  V R+N   G  +
Sbjct: 254 MTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK 313

Query: 263 VAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMK 322
           VAYTFDAGPNAV+      +A E +  +   FPP +  D                + G++
Sbjct: 314 VAYTFDAGPNAVIFTLEDTVA-EFVAAVRHSFPPAANGDKF--------------LKGLQ 358

Query: 323 DIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
               L        +  +   G V Y I T+ G GP +L D    LL    GLP+
Sbjct: 359 VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLGQ-DGLPQ 411
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Length = 380 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 100.0
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 100.0
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 100.0
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 100.0
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 100.0
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 100.0
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.95
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.94
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.93
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.92
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.92
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.91
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.89
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.89
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.88
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.88
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.88
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.87
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.86
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.85
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.83
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.81
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.8
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.77
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.76
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.7
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 99.24
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
Probab=100.00  E-value=5.5e-72  Score=559.29  Aligned_cols=348  Identities=47%  Similarity=0.740  Sum_probs=299.6

Q ss_pred             CCeeEEEEecC--CCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031            7 PLIPITSVLPQ--PLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL   84 (378)
Q Consensus         7 ~~~~~t~v~~~--~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL   84 (378)
                      .++|+|+|..+  +++|++||||++++.+.+|+++||+++|++++..+..+.+.  ..|.+..++++|+++|+||+++||
T Consensus        61 ~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~~l~~iR~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~iP~aaGL  138 (414)
T 3f0n_A           61 QLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGD--TLPLSLSYKVHVASVNNFPTAAGL  138 (414)
T ss_dssp             TSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHHHHHHHHHHHHC-------C--CHHHHHHSCEEEEEEECCCGGGCC
T ss_pred             CceEEEEEEEecCCCceEEEECCEecCcccHHHHHHHHHHHHHhcccccccccc--cccccccCcEEEEEEeCCCCCcCc
Confidence            69999999854  45799999999987678999999999999988643211111  113355689999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEE
Q 017031           85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAV  164 (378)
Q Consensus        85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilv  164 (378)
                      |||||++||+++|+|++|++   .+||+++||+|+||+|||+|||||+|..+...++.++++++++++.|||++++++++
T Consensus       139 gSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv  215 (414)
T 3f0n_A          139 ASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILV  215 (414)
T ss_dssp             CHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGGGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcchHhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEE
Confidence            99999999999999999998   479999999999999999999999998886667889999999877899999999999


Q ss_pred             ECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchH
Q 017031          165 VSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTS  244 (378)
Q Consensus       165 v~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s  244 (378)
                      +|..+|+++||++|+++++++++|++|+++++..++..|+.||.++||+.|++++|+|+++||++|++++||++||+|.+
T Consensus       216 ~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s  295 (414)
T 3f0n_A          216 VSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTS  295 (414)
T ss_dssp             ESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHH
T ss_pred             eCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccH
Confidence            99999999999999999999999999998645899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-CCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCCCCCCccccccCcchhhhhccCCCccc
Q 017031          245 HRIISYVERWNRSV-GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKD  323 (378)
Q Consensus       245 ~~ii~~v~~~~~~~-G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (378)
                      .++++.++++++.. |+. ++|||||||||++|+++++.++ +.+.|++.|++..+|+  .|++|.+             
T Consensus       296 ~~ii~~v~~~r~~~~g~~-~~~tsdAGPnv~vl~~~~~~~~-v~~~l~~~f~~~~~~~--~~~~~~~-------------  358 (414)
T 3f0n_A          296 RRIIQLVHRFNTHHGQTK-VAYTFDAGPNAVIFTLEDTVAE-FVAAVRHSFPPAANGD--KFLKGLQ-------------  358 (414)
T ss_dssp             HHHHHHHHHHHHHHTSCC-EEEECCSSSCEEEEEEHHHHHH-HHHHHHHHSCCSCC----CCEEESC-------------
T ss_pred             HHHHHHHHHHHHhcCCce-EEEEECCCCCEEEEEecccHHH-HHHHHHHhcCCCCCcc--cccccCc-------------
Confidence            99999999997644 676 9999999999999999988887 9999999999877654  3555432             


Q ss_pred             ccCCCCCcccc-cccccccCCCcceEEEecCCCCceecCCCcccccCCCCCCCCC
Q 017031          324 IEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE  377 (378)
Q Consensus       324 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~~~g~~~~  377 (378)
                      ++...+++++. .+..++.+++|+|||||+||+||++++++++||||+ +|+||.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~-~g~~~~  412 (414)
T 3f0n_A          359 VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLGQ-DGLPQR  412 (414)
T ss_dssp             CCCCCCCHHHHHHSCSSCCTTSEEEEEEEEBCCCCEEECCGGGCSBCT-TSSBC-
T ss_pred             cccccCChhhhhcccccccCCceeEEEECCCCCCCEECCchhHhcCCC-CCCcCC
Confidence            33344455555 566666899999999999999999999899999995 999985
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d1fi4a2203 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate dec 3e-65
d1fi4a1188 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarb 2e-42
d1h72c1163 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Met 5e-04
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate 5-diphosphate decarboxylase
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  203 bits (519), Expect = 3e-65
 Identities = 80/217 (36%), Positives = 108/217 (49%), Gaps = 15/217 (6%)

Query: 158 LVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQ 217
           +   + VVS  +K+ SST GM+ +V TS L + R + VVPKR   M +AI   DF++FA+
Sbjct: 2   MKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAK 61

Query: 218 LTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIA 277
            T  DSN FHA CLD+ PPIFYMNDTS RIIS+    N+  G   VAYTFDAGPNAVL  
Sbjct: 62  ETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYY 121

Query: 278 RNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNIS 337
              +  ++L   +   F      D        ++             E            
Sbjct: 122 L-AENESKLFAFIYKLFGSVPGWDKKFTTEQLEAFNHQFESSNFTARELDLELQ------ 174

Query: 338 AQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGL 374
                 DV   I T+ G GP   ++   +L++ K+GL
Sbjct: 175 -----KDVARVILTQVGSGPQETNE---SLIDAKTGL 203
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.66
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 99.43
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.3
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.29
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.27
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.11
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.0
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 98.92
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 98.69
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 98.65
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.41
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.54
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 97.47
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 97.41
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 97.35
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 97.16
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 96.58
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 96.02
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate 5-diphosphate decarboxylase
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-47  Score=341.12  Aligned_cols=202  Identities=40%  Similarity=0.565  Sum_probs=170.8

Q ss_pred             CceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCC
Q 017031          157 DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPP  236 (378)
Q Consensus       157 ~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~  236 (378)
                      +|+++|+|+++.+|++|||+||+.+++||++|+.|+++++++|+.+|.+||+++||+.|++++|+|+|+||++|++++||
T Consensus         1 elr~~IlVvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~~p~r~~~m~~AI~~rDF~~f~eite~ds~~mHA~~l~s~Pp   80 (203)
T d1fi4a2           1 QMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPP   80 (203)
T ss_dssp             TEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred             CceEEEEEecCCCCCCCcHHHHHHHHHhChhHHHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHHHhcCCCC
Confidence            58899999999999999999999999999999999998779999999999999999999999999999999999999999


Q ss_pred             ccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCCCCCCccccccCcchhhhhc
Q 017031          237 IFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDA  316 (378)
Q Consensus       237 ~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~  316 (378)
                      ++||+|.+.++|++|+++|+..|...++||+|||||+++|+++++..+ ++..+++.|+...+|+....  +.  .++..
T Consensus        81 i~Ylnd~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~ll~~~~~~~~-v~~~l~~~f~~~~~~~~~~~--~~--~~~~~  155 (203)
T d1fi4a2          81 IFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLAENESK-LFAFIYKLFGSVPGWDKKFT--TE--QLEAF  155 (203)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEEEEEEGGGHHH-HHHHHHHHHTTSTTSTTTCC--HH--HHHHH
T ss_pred             eEEECchHHHHHHHHHHHHHhcCCccEEEEECCCCCEEEEEccccHHH-HHHHHHHHCCCCCCcccccc--cc--ccccc
Confidence            999999999999999999986665559999999999999999999998 99999999999988875421  11  11110


Q ss_pred             cCCCcccccCCCCCcccc-cccccccCCCcceEEEecCCCCceecCCCcccccCCCCCC
Q 017031          317 GIDGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGL  374 (378)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~~~g~  374 (378)
                      ..    ..+.    ..+. .......+++|+|||||+||+||+.++   +||||++|||
T Consensus       156 ~~----~~~~----~~~~~~~~~~~~~~~v~~iI~T~vG~GP~~~~---~~L~~~~tgl  203 (203)
T d1fi4a2         156 NH----QFES----SNFTARELDLELQKDVARVILTQVGSGPQETN---ESLIDAKTGL  203 (203)
T ss_dssp             HH----HHHT----SCCCSSCCCSSGGGGEEEEEEEEBCCCCEECS---CCSSCSSSCC
T ss_pred             cc----cccc----cccccccccccccCCccEEEEcCCCCCccccc---hhccCCCCCC
Confidence            00    0000    1111 111123579999999999999999975   8999998997
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure