Citrus Sinensis ID: 017035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MKREEMDGSCMDESTTTDSASTSPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNNNGKRLREMELLSLECSKKQRMIGAL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEccccccEEEccccccHHHccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccccccccccccccccccccccccccEEEcccccEEEcccccccEEcccccccccccccccccccccHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHcEEEEcccccccccccEccHHHHHHHcccccccccccEEEEEEEccccEEEEEEEEcccccEEEEEcccHHHHHccccccccEEEEEEcccccEEEEEEEcccccccccccccHHHEHHcccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHcccHHccc
Coil and Loop (DISEMBL)
mkreemdgscmdestttdsastsppitfpasipptkspeslcrvgsgassvildseagveaesrklpsskykgvvpqpngrwgaqIYEKHQRVWLGTFNEEEEAARAYDIAAQrfrgrdavtnfkqiscagtssddgdIEMAFLSSHSKSEIVDMLRKhtyndeleqskrnygldangkrvikhgegdgaatafgsDRVLKARDQLFekavtpsdvgklnrlvipkqhaekhfplqsgstskglllnfedvTGKVWRFRYSYWNSSQSYVLTKGWSRFVkeknlkagdivsfhrstggdrqlYIDWkartgpienpvepvQMMRLFGvnifkipgnglvgvdkigcninnnnnngkRLREMELLSLECSKKQRMIGAL
Flexible Loop (DISEMBL)
mkreemdgscmdestttdsastsppITFPASIPPTKSPESLCRVGSGASSVIldseagveaesrklpsskykgvvpqpngrwgaQIYEKHQRVWLGTFNEEEEAARAYDIAAQrfrgrdavtnfkqiscagtssddgDIEMAFLSSHSKSEIVDMLRKHTyndeleqskrnygldaNGKRVIKHGEGDGAATAFGSDRVLKARDQLFekavtpsdvgklnRLVIPKQHAEkhfplqsgstskgllLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKnlkagdivsfhrstggdrqlyIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNinnnnnngkrLREMELlslecskkqrmigal
Low Complexity Region (SEG)
MKREEMDGSCMDEstttdsastsPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCninnnnnnGKRLREMELLSLECSKKQRMIGAL
Disordered region (IsUnstruct)
******************************************************************************NGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCA***************************************************************FG**RVLKARDQLFEKAVTPSDVGKLNRLVIP****************KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGC********************************
Disordered Region (DISOPRED)
***************************************************************************PQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSG*TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWK***************MRLFGVNIFKIPGNG******************************CSKKQRMIGA*
Disordered Region (DISEMBL)
************************PITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNNNGKRLREMELLSLECSK********
Disordered Region (DISPRO)
***************************************SLC****GASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKR*******************************ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTG****PVEPVQMMRLFGVNIFKIPG**********************LREMELLSLECSKKQRMIG*L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKREEMDGSCMDESTTTDSASTSPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNNNGKRLREMELLSLECSKKQRMIGAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
P82280	352	AP2/ERF and B3 domain-con	yes	no	0.907	0.974	0.638	1e-125
Q9C6M5	361	AP2/ERF and B3 domain-con	no	no	0.907	0.950	0.613	1e-122
Q9ZWM9	344	AP2/ERF and B3 domain-con	no	no	0.894	0.982	0.625	1e-118
Q9LS06	333	AP2/ERF and B3 domain-con	no	no	0.775	0.879	0.621	1e-103
Q8RZX9	393	AP2/ERF and B3 domain-con	yes	no	0.764	0.735	0.570	2e-95
Q6L4H4	394	AP2/ERF and B3 domain-con	no	no	0.679	0.652	0.597	2e-90
Q9AWS7	317	Putative AP2/ERF and B3 d	no	no	0.632	0.753	0.580	2e-72
Q9AWS0	365	AP2/ERF and B3 domain-con	no	no	0.719	0.745	0.516	4e-70
O82799	310	B3 domain-containing tran	no	no	0.314	0.383	0.680	4e-43
Q7F9W2	316	B3 domain-containing prot	no	no	0.283	0.338	0.715	1e-40

>sp|P82280|RAV2_ARATH AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1

 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/382 (63%), Positives = 287/382 (75%), Gaps = 39/382 (10%)

Query: 6   MDGSCMDESTTTDSASTSPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRK 65
           MD SC+DE +++ S S S       S PP  +   L R+GSG SSV+LD E G+E ESRK
Sbjct: 1   MDSSCIDEISSSTSESFSATTAKKLS-PPPAAALRLYRMGSGGSSVVLDPENGLETESRK 59

Query: 66  LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFK 125
           LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNE+EEAAR+YDIAA RFRGRDAV NFK
Sbjct: 60  LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEQEEAARSYDIAACRFRGRDAVVNFK 119

Query: 126 QISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRN---YGLDANGKRVI 182
            +       +DGD  +AFL +HSK+EIVDMLRKHTY DELEQ+ +      +DANGKR  
Sbjct: 120 NV------LEDGD--LAFLEAHSKAEIVDMLRKHTYADELEQNNKRQLFLSVDANGKR-- 169

Query: 183 KHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS--T 240
                +G++T   +D+VLK R+ LFEKAVTPSDVGKLNRLVIPKQHAEKHFPL S S   
Sbjct: 170 -----NGSSTT-QNDKVLKTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAV 223

Query: 241 SKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDR 300
           +KG+L+NFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+V+F RSTG +R
Sbjct: 224 TKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLER 283

Query: 301 QLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPG---NGLVGVDKIGCNINNNNNNGKR 357
           QLYIDWK R+GP ENPV+ V  +RLFGV+IF +     N +V V    C        GKR
Sbjct: 284 QLYIDWKVRSGPRENPVQVV--VRLFGVDIFNVTTVKPNDVVAV----C-------GGKR 330

Query: 358 LREM-ELLSLECSKKQRMIGAL 378
            R++ ++ +L CSKKQ +I AL
Sbjct: 331 SRDVDDMFALRCSKKQAIINAL 352

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcritptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6M5|RAVL1_ARATH AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1

 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/391 (61%), Positives = 278/391 (71%), Gaps = 48/391 (12%)

Query: 6   MDGSCMDESTTT-DSASTSPPITFPA------SIPPTKSPESLCRVGSGASSVILDSEAG 58
           M+ SC+D+S+TT +S S S             S PP  S   L R+GSG SSV+LDSE G
Sbjct: 1   MEYSCVDDSSTTSESLSISTTPKPTTTTEKKLSSPPATSMR-LYRMGSGGSSVVLDSENG 59

Query: 59  VEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGR 118
           VE ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAA +YDIA +RFRGR
Sbjct: 60  VETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGR 119

Query: 119 DAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANG 178
           DAVTNFK      +  D  D E AFL +HSK+EIVDMLRKHTY DE EQS+R + ++ +G
Sbjct: 120 DAVTNFK------SQVDGNDAESAFLDAHSKAEIVDMLRKHTYADEFEQSRRKF-VNGDG 172

Query: 179 KRVIKHGEGDGAATA-FGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS 237
           KR        G  TA +G+D VL+AR+ LFEK VTPSDVGKLNRLVIPKQHAEKHFPL +
Sbjct: 173 KR-------SGLETATYGNDAVLRAREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPA 225

Query: 238 GST--------SKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDI 289
            +T        +KG+L+N ED TGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+
Sbjct: 226 MTTAMGMNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDV 285

Query: 290 VSFHRSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGN--GLVGVDKIGCN 347
           V F RSTG DRQLYI WK R+ P++       ++RLFGVNIF +       V V+ +G  
Sbjct: 286 VCFERSTGPDRQLYIHWKVRSSPVQT------VVRLFGVNIFNVSNEKPNDVAVECVG-- 337

Query: 348 INNNNNNGKRLREMELLSLECSKKQRMIGAL 378
                   KR RE +L SL CSKKQ +I  L
Sbjct: 338 -------KKRSREDDLFSLGCSKKQAIINIL 361

Transcritptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWM9|RAV1_ARATH AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1

 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/377 (62%), Positives = 272/377 (72%), Gaps = 39/377 (10%)

Query: 6   MDGSCMDESTTTDSASTSPPITFPASIPPTKSPE-SLCRVGSGASSVILDSEAGVEAESR 64
           M+ S +DESTT    ST      PA  P  KS   +L R+GSG SSV+LDSE GVEAESR
Sbjct: 1   MESSSVDESTT----STGSICETPAITPAKKSSVGNLYRMGSG-SSVVLDSENGVEAESR 55

Query: 65  KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNF 124
           KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYD+A  RFR RDAVTNF
Sbjct: 56  KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRRDAVTNF 115

Query: 125 KQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKH 184
           K +        D D E+ FL+SHSKSEIVDMLRKHTYN+ELEQSKR    + N  R +  
Sbjct: 116 KDVKM------DED-EVDFLNSHSKSEIVDMLRKHTYNEELEQSKRRRNGNGNMTRTLLT 168

Query: 185 G--EGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS- 241
                DG +T        ++ + LFEKAVTPSDVGKLNRLVIPK HAEKHFPL S + S 
Sbjct: 169 SGLSNDGVSTTG-----FRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSV 223

Query: 242 KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQ 301
           KG+LLNFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+VSF RS G D+Q
Sbjct: 224 KGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQ 283

Query: 302 LYIDWKARTGPIENPVEPVQMMRLFGVNIF-KIPGNGLVGVDKIGCNINNNNNNGKRLRE 360
           LYI WK+R+G   + ++  +++RLFGVNI  +   N +VG               KR+ +
Sbjct: 284 LYIGWKSRSG---SDLDAGRVLRLFGVNISPESSRNDVVG--------------NKRVND 326

Query: 361 MELLSLECSKKQRMIGA 377
            E+LSL CSKKQR+  A
Sbjct: 327 TEMLSLVCSKKQRIFHA 343

Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LS06|RAVL4_ARATH AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/333 (62%), Positives = 243/333 (72%), Gaps = 40/333 (12%)

Query: 11  MDESTTTDSASTSPPITFPASIPPTKS--PESLC-RVGSGASSVILDSEAGVE----AES 63
           MD  ++ D +ST+       SIP  KS  P SL  R+GSG +SV+LDSE GVE    AES
Sbjct: 1   MDAMSSVDESSTTTD-----SIPARKSSSPASLLYRMGSG-TSVVLDSENGVEVEVEAES 54

Query: 64  RKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTN 123
           RKLPSS++KGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYD+AA RFRGRDAVTN
Sbjct: 55  RKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAHRFRGRDAVTN 114

Query: 124 FKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIK 183
           FK  +         + E+ FL++HSKSEIVDMLRKHTY +EL+Q KRN   D NGK    
Sbjct: 115 FKDTTF--------EEEVEFLNAHSKSEIVDMLRKHTYKEELDQRKRNR--DGNGK---- 160

Query: 184 HGEGDGAATAFGSDRVL---KARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGST 240
               +  A A  S  V+   K  + LFEK VTPSDVGKLNRLVIPK  AEKHFPL  G+ 
Sbjct: 161 ----ETTAFALASMVVMTGFKTAELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNN 216

Query: 241 S---KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTG 297
           +   KG+LLNFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEK L AGD++SF RS  
Sbjct: 217 NVSVKGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSND 276

Query: 298 GDRQLYIDWKARTGPIENPVEPVQMMRLFGVNI 330
            D++ +I WK+++G     +E  ++MRLFGV+I
Sbjct: 277 QDQKFFIGWKSKSGL---DLETGRVMRLFGVDI 306

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RZX9|Y1934_ORYSJ AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/331 (57%), Positives = 224/331 (67%), Gaps = 42/331 (12%)

Query: 41  LCRVGSGASSVILDSEAGVEAESR------------------KLPSSKYKGVVPQPNGRW 82
           L R+GSGAS+V+  +E G EA+S                   KLPSSK+KGVVPQPNGRW
Sbjct: 34  LERMGSGASAVVDAAEPGAEADSGSGGRVCGGGGGGAGGAGGKLPSSKFKGVVPQPNGRW 93

Query: 83  GAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMA 142
           GAQIYE+HQRVWLGTF  E++AARAYD+AAQRFRGRDAVTNF+ ++ A   +     E+ 
Sbjct: 94  GAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNFRPLAEADPDA---AAELR 150

Query: 143 FLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLD----ANGKRVIKHGEGDGAATAFGSDR 198
           FL++ SK+E+VDMLRKHTY DEL QSKR +       A     + +G      + F    
Sbjct: 151 FLATRSKAEVVDMLRKHTYFDELAQSKRTFAASTPSAATTTASLSNGHLSSPRSPFAP-- 208

Query: 199 VLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ---SGSTSKGLLLNFEDVTGKV 255
              ARD LF+K VTPSDVGKLNRLVIPKQHAEKHFPLQ   +G  SKG+LLNFED  GKV
Sbjct: 209 -AAARDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKV 267

Query: 256 WRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR---STGGDRQLYIDWK----- 307
           WRFRYSYWNSSQSYVLTKGWSRFVKEK L AGD+V F+R   S G D +L+ID K     
Sbjct: 268 WRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRST 327

Query: 308 --ARTGPIENPV-EPVQMMRLFGVNIFKIPG 335
             A   P + P   PV+ +RLFGV++   P 
Sbjct: 328 GAALASPADQPAPSPVKAVRLFGVDLLTAPA 358

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6L4H4|Y5498_ORYSJ AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/296 (59%), Positives = 206/296 (69%), Gaps = 39/296 (13%)

Query: 41  LCRVGSGASSVILDSEAGVEAESR---------KLPSSKYKGVVPQPNGRWGAQIYEKHQ 91
           L RVGSGAS+V+  +E G EA+S          KLPSSKYKGVVPQPNGRWGAQIYE+HQ
Sbjct: 30  LQRVGSGASAVMDAAEPGAEADSGGERRGGGGGKLPSSKYKGVVPQPNGRWGAQIYERHQ 89

Query: 92  RVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSE 151
           RVWLGTF  E EAARAYD+AAQRFRGRDAVTNF+ ++    S  +  +E+ FL+S SK+E
Sbjct: 90  RVWLGTFTGEAEAARAYDVAAQRFRGRDAVTNFRPLA---ESDPEAAVELRFLASRSKAE 146

Query: 152 IVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAV 211
           +VDMLRKHTY +EL Q+KR +   A      KH      +++        AR+ LF+K V
Sbjct: 147 VVDMLRKHTYLEELTQNKRAFA--AISPPPPKHPASSPTSSS-------AAREHLFDKTV 197

Query: 212 TPSDVGKLNRLVIPKQHAEKHFPLQ------------------SGSTSKGLLLNFEDVTG 253
           TPSDVGKLNRLVIPKQHAEKHFPLQ                   G   KG+LLNFED  G
Sbjct: 198 TPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAG 257

Query: 254 KVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKAR 309
           KVW+FRYSYWNSSQSYVLTKGWSRFVKEK L AGD V F+R+ G + QL+ID K R
Sbjct: 258 KVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQLFIDCKVR 313

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AWS7|Y1407_ORYSJ Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/274 (58%), Positives = 188/274 (68%), Gaps = 35/274 (12%)

Query: 67  PSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQ 126
           PSS+YKGVVPQPNGRWGAQIYE+H RVWLGTF +EE AARAYD+AA RFRGRDAVTN + 
Sbjct: 63  PSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTN-RA 121

Query: 127 ISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGE 186
            +  G S+     E+AFL++HSK+E+VDMLRKHTY+DEL+Q  R       G R      
Sbjct: 122 PAAEGASAG----ELAFLAAHSKAEVVDMLRKHTYDDELQQGLRR------GSRAQPTPR 171

Query: 187 GDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL-----QSGSTS 241
                          AR+ LFEKAVTPSDVGKLNRLV+PKQ AE+HFP       S +  
Sbjct: 172 W--------------AREPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAG 217

Query: 242 KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRST---GG 298
           KG+LLNFED  GKVWRFRYSYWNSSQSYVLTKGWSRFV+EK L+ GD V+F RS    G 
Sbjct: 218 KGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWGT 277

Query: 299 DRQLYIDWKA--RTGPIENPVEPVQMMRLFGVNI 330
           ++ L ID K   R        +   +++LFGV+I
Sbjct: 278 EKHLLIDCKKMERNNLATVDDDARVVVKLFGVDI 311

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AWS0|Y1410_ORYSJ AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1

 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 172/333 (51%), Positives = 206/333 (61%), Gaps = 61/333 (18%)

Query: 70  KYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISC 129
           +YKGVVPQPNGRWGAQIYE+H RVWLGTF +EE AARAYD+AA R+RGRDA TNF     
Sbjct: 68  RYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNF----- 122

Query: 130 AGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDG 189
               +     E+AFL++HSK+EIVDMLRKHTY DEL Q              ++ G G G
Sbjct: 123 --PGAAASAAELAFLAAHSKAEIVDMLRKHTYADELRQG-------------LRRGRGMG 167

Query: 190 AATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ---------SGST 240
           A           AR+ LFEKAVTPSDVGKLNRLV+PKQHAEKHFPL+         + +T
Sbjct: 168 ARAQPTPS---WAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAAT 224

Query: 241 SKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRST-GGD 299
            KG+LLNFED  GKVWRFRYSYWNSSQSYVLTKGWSRFV+EK L+AGD + F RS  G D
Sbjct: 225 GKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPD 284

Query: 300 RQLYIDWKARTG------------PIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCN 347
           + L+ID K                P  +  EP +++RLFGV+I              G +
Sbjct: 285 KLLFIDCKKNNAAAATTTCAGDERPTTSGAEP-RVVRLFGVDI-------------AGGD 330

Query: 348 INNNNNNGKRLREMELLSLECSKKQRM--IGAL 378
                   +  +E+ LL  +C   QR   +GAL
Sbjct: 331 CRKRERAVEMGQEVFLLKRQCVVHQRTPALGAL 363

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82799|NGA1_ARATH B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=1 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 97/122 (79%), Gaps = 3/122 (2%)

Query: 198 RVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWR 257
           R +  R+ +F+K VTPSDVGKLNRLVIPKQHAE+ FPL S S  KGLLLNFED+TGK WR
Sbjct: 26  REVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSSNEKGLLLNFEDLTGKSWR 85

Query: 258 FRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR---STGGDRQLYIDWKARTGPIE 314
           FRYSYWNSSQSYV+TKGWSRFVK+K L AGDIVSF R    +G D +L+IDW+ R    +
Sbjct: 86  FRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDWRRRPKVPD 145

Query: 315 NP 316
           +P
Sbjct: 146 HP 147

Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F9W2|Y4814_ORYSJ B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 90/109 (82%), Gaps = 2/109 (1%)

Query: 203 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSY 262
           ++ +F+K VTPSDVGKLNRLVIPKQHAEK+FPL S +  KGLLL+FED TGK+WRFRYSY
Sbjct: 106 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFRYSY 165

Query: 263 WNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR--STGGDRQLYIDWKAR 309
           WNSSQSYV+TKGWSRFVKEK L AGD VSF R  +     +L+IDWK R
Sbjct: 166 WNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRDRLFIDWKRR 214

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
225423895	358	PREDICTED: AP2/ERF and B3 domain-contain	0.941	0.994	0.776	1e-159
147782990	364	hypothetical protein VITISV_032171 [Viti	0.931	0.967	0.778	1e-158
383932346	357	RAV [Gossypium hirsutum]	0.931	0.985	0.743	1e-151
255566851	371	DNA-binding protein RAV1, putative [Rici	0.952	0.970	0.721	1e-149
374259661	383	RAV1 [Castanea sativa]	0.949	0.937	0.717	1e-148
224111734	367	AP2 domain-containing transcription fact	0.931	0.959	0.706	1e-142
253560642	362	RAV transcription factor [Camellia sinen	0.933	0.975	0.688	1e-140
224099325	369	AP2 domain-containing transcription fact	0.931	0.953	0.684	1e-138
194475604	385	RAV [Nicotiana tabacum]	0.960	0.942	0.680	1e-135
292668949	406	AP2 domain class transcription factor [M	0.875	0.815	0.704	1e-134

>gi|225423895|ref|XP_002281709.1| PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like [Vitis vinifera]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/375 (77%), Positives = 323/375 (86%), Gaps = 19/375 (5%)

Query: 6   MDGSCMDESTTTDSASTSPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRK 65
           MDGSC+DESTT+DS STS P    +++P TKSPESLCRVGSG +SVILDSE+ +EAESRK
Sbjct: 1   MDGSCIDESTTSDSISTSLPAL--SALPATKSPESLCRVGSG-TSVILDSESSIEAESRK 57

Query: 66  LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFK 125
           LPSS++KGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAA+AYDIAAQRFRGRDAVTNFK
Sbjct: 58  LPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFK 117

Query: 126 QISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHG 185
            +S     +++ DIE AFL+SHSK+EIVDMLRKHTYNDELEQSKRNYGLDANGKR     
Sbjct: 118 PLS----ETEEDDIEAAFLNSHSKAEIVDMLRKHTYNDELEQSKRNYGLDANGKR----S 169

Query: 186 EGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLL 245
             +G  T FGSDRV K+R+QLFEK VTPSDVGKLNRLVIPKQHAEKHFPLQ+G+TSKG+L
Sbjct: 170 RAEGLMTPFGSDRVTKSREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQTGTTSKGVL 229

Query: 246 LNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYID 305
           LNFED+ GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF RSTGGD+QLYID
Sbjct: 230 LNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGGDKQLYID 289

Query: 306 WKARTGPIE--NPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNNNGKRLREMEL 363
           WKAR GP    NPVEPV+M+RLFGVNIFK+P N  V V       NN +  GKR+ EMEL
Sbjct: 290 WKARNGPTNQINPVEPVEMVRLFGVNIFKVPVNSSVVV------ANNGSWTGKRMIEMEL 343

Query: 364 LSLECSKKQRMIGAL 378
           LS ECSKKQR+IGA+
Sbjct: 344 LSFECSKKQRVIGAV 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782990|emb|CAN68564.1| hypothetical protein VITISV_032171 [Vitis vinifera]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/371 (77%), Positives = 319/371 (85%), Gaps = 19/371 (5%)

Query: 6   MDGSCMDESTTTDSASTSPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRK 65
           MDGSC+DESTT+DS STS P    +++P TKSPESLCRVGSG +SVILDSE+ +EAESRK
Sbjct: 1   MDGSCIDESTTSDSISTSLPAL--SALPATKSPESLCRVGSG-TSVILDSESSIEAESRK 57

Query: 66  LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFK 125
           LPSS++KGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAA+AYDIAAQRFRGRDAVTNFK
Sbjct: 58  LPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFK 117

Query: 126 QISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHG 185
            +S     +++ DIE AFL+SHSK+EIVDMLRKHTYNDELEQSKRNYGLDANGKR     
Sbjct: 118 PLS----ETEEDDIEAAFLNSHSKAEIVDMLRKHTYNDELEQSKRNYGLDANGKR----S 169

Query: 186 EGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLL 245
             +G  T FGSDRV K+R+QLFEK VTPSDVGKLNRLVIPKQHAEKHFPLQ+G+TSKG+L
Sbjct: 170 RAEGLMTPFGSDRVTKSREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQTGTTSKGVL 229

Query: 246 LNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYID 305
           LNFED+ GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF RSTGGD+QLYID
Sbjct: 230 LNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGGDKQLYID 289

Query: 306 WKARTGPIE--NPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNNNGKRLREMEL 363
           WKAR GP    NPVEPV+M+RLFGVNIFK+P N  V V       NN +  GKR+ EMEL
Sbjct: 290 WKARNGPTNQINPVEPVEMVRLFGVNIFKVPVNSSVVV------ANNGSWTGKRMIEMEL 343

Query: 364 LSLECSKKQRM 374
           LS ECSKKQRM
Sbjct: 344 LSFECSKKQRM 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932346|gb|AFH57270.1| RAV [Gossypium hirsutum]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/378 (74%), Positives = 315/378 (83%), Gaps = 26/378 (6%)

Query: 6   MDGSCMDESTTTDSASTSPPITFPASIPP----TKSPESLCRVGSGASSVILDSEAGVEA 61
           MDGS +DESTT+DS S S     P++I P    TKSP+SL RVGSG +SVI+DSE+GVEA
Sbjct: 1   MDGSSIDESTTSDSISVS---IAPSNISPLPQLTKSPDSLYRVGSG-TSVIVDSESGVEA 56

Query: 62  ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAV 121
           ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAA+AYDIAAQRFRGRDAV
Sbjct: 57  ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAAKAYDIAAQRFRGRDAV 116

Query: 122 TNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRV 181
           TNFK +       +D DI++AFL+SHSK+EIVDMLRKHTYNDELEQS+R+YG D NGKR+
Sbjct: 117 TNFKHLH----EMEDDDIQIAFLNSHSKAEIVDMLRKHTYNDELEQSRRSYGFDGNGKRI 172

Query: 182 IKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS-T 240
           ++  +G G     G +  LKAR+QLFEKAVTPSDVGKLNRLVIPKQHAEK+FPLQSGS +
Sbjct: 173 VRKEDGFGT---LGFE--LKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKYFPLQSGSAS 227

Query: 241 SKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDR 300
           SKG+LLNFEDVTGKVWRFRYSYWNSSQSYVL KGWSRFVKEKNLKAGDIVSF RSTG ++
Sbjct: 228 SKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLIKGWSRFVKEKNLKAGDIVSFQRSTGTEK 287

Query: 301 QLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNNNGKRLRE 360
           QLYIDWKARTG       PVQM+RLFGVNIFK+PG+  VG+   GC       NGKR RE
Sbjct: 288 QLYIDWKARTGLGSGLENPVQMVRLFGVNIFKMPGSENVGLAG-GC-------NGKRTRE 339

Query: 361 MELLSLECSKKQRMIGAL 378
           MELL LECSKKQR+I AL
Sbjct: 340 MELLELECSKKQRVIDAL 357

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566851|ref|XP_002524409.1| DNA-binding protein RAV1, putative [Ricinus communis] gi|223536370|gb|EEF38020.1| DNA-binding protein RAV1, putative [Ricinus communis]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/384 (72%), Positives = 313/384 (81%), Gaps = 24/384 (6%)

Query: 6   MDGSCMDESTTTDSASTSPPITF-PASIP-PTKSPES-LCRVGSGASSVILDSEAGVEAE 62
           MDGSC+DESTT+DS S +P     P+S P P+KSPES LCRVGSG +SV+LDSE+G+EAE
Sbjct: 1   MDGSCIDESTTSDSISITPTSNISPSSNPLPSKSPESPLCRVGSG-TSVVLDSESGIEAE 59

Query: 63  SRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVT 122
           SRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAA+AYDIAAQRFRGRDA+T
Sbjct: 60  SRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAAKAYDIAAQRFRGRDAIT 119

Query: 123 NFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVI 182
           NFK  +    S +D +IE AFL+SHSK+EIVDMLRKHTYNDELEQSKRNY  +       
Sbjct: 120 NFKPQATDHQSEED-EIETAFLNSHSKAEIVDMLRKHTYNDELEQSKRNYTSNNGRGDKF 178

Query: 183 KHGEGDGAATAFGSDR-VLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS 241
           ++          GS+R ++KAR+QLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS S
Sbjct: 179 QNRTNMNNVGLSGSERIIMKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSNS 238

Query: 242 -KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDR 300
            KG+LLNFED+TGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIV F +STG D+
Sbjct: 239 TKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVRFLKSTGPDK 298

Query: 301 QLYIDWKART------GPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNNN 354
           QLYIDWK RT       P+   V+PVQM+RLFGVNIFK+PGN  +     GC       N
Sbjct: 299 QLYIDWKVRTLTPTVSNPVVCSVQPVQMVRLFGVNIFKVPGNSHIE----GC-------N 347

Query: 355 GKRLREMELLSLECSKKQRMIGAL 378
           GKR+REMELLSL+C KKQR+IGAL
Sbjct: 348 GKRIREMELLSLDCIKKQRVIGAL 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374259661|gb|AEZ02303.1| RAV1 [Castanea sativa]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/397 (71%), Positives = 314/397 (79%), Gaps = 38/397 (9%)

Query: 6   MDGSCMDESTTTDSASTSPPIT---FPASIPPTKSPESLCRVGSGASS-VILDSEAGVEA 61
           MDGSC+DESTT+DS S SP  T   FP+    TKSPESLCRVGSG +S +ILDSE+G+EA
Sbjct: 1   MDGSCIDESTTSDSMSVSPATTQSPFPSPTNITKSPESLCRVGSGTTSTLILDSESGIEA 60

Query: 62  ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAV 121
           ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAA+AYDIAAQRFRGRDAV
Sbjct: 61  ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAAKAYDIAAQRFRGRDAV 120

Query: 122 TNFKQISCAGT-------SSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGL 174
           TNFK   C  T          + DIE  FL+SHSK+EIVDMLRKHTYNDELEQSKRNYGL
Sbjct: 121 TNFK--PCGTTDHHHHHHHHQEDDIETVFLNSHSKAEIVDMLRKHTYNDELEQSKRNYGL 178

Query: 175 DANGKRVIKHGEGDGAATAFGSDRV----LKARDQLFEKAVTPSDVGKLNRLVIPKQHAE 230
           D+  +     GE  G       +RV    +KAR+QLFEKAVTPSDVGKLNRLVIPKQHAE
Sbjct: 179 DSTRR---SKGESLGHGLL---ERVNYYSMKAREQLFEKAVTPSDVGKLNRLVIPKQHAE 232

Query: 231 KHFPLQ-----SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLK 285
           KHFPLQ     S ++SKGLLLNFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLK
Sbjct: 233 KHFPLQNSGSNSTTSSKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLK 292

Query: 286 AGDIVSFHRSTGGDRQLYIDWKARTGP--IENPVEPVQMMRLFGVNIFKIPG-NGLVGVD 342
           AGDIVSFHRSTG D QL+I+WKAR GP    +   PVQM+RLFGVNI KIPG  G+V   
Sbjct: 293 AGDIVSFHRSTGPDNQLFIEWKARAGPSSSSSSSNPVQMVRLFGVNILKIPGVGGVVESG 352

Query: 343 KI-GCNINNNNNNGKRLREMELLSLECSKKQRMIGAL 378
            I GC      N GKR+REM+LL+LECSKKQR++GAL
Sbjct: 353 NIGGC------NGGKRMREMDLLALECSKKQRIVGAL 383

Source: Castanea sativa

Species: Castanea sativa

Genus: Castanea

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111734|ref|XP_002315958.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222864998|gb|EEF02129.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/388 (70%), Positives = 308/388 (79%), Gaps = 36/388 (9%)

Query: 6   MDGSCMDESTTTDSASTSPPITFPASIPPTKS--------PESLCRVGSGASSVILDSEA 57
           MDGSC+DESTT+ SA  S  IT P S+PP           PESLCRV SG SSVILDSE+
Sbjct: 1   MDGSCIDESTTS-SADNSISIT-PTSLPPFPPTATTTKSPPESLCRVRSGNSSVILDSES 58

Query: 58  GVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRG 117
           GVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE EAARAYDIAAQRFRG
Sbjct: 59  GVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENEAARAYDIAAQRFRG 118

Query: 118 RDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLD-- 175
           RDAVTNFKQ++     ++D +IE AFL++HSK+EIVDMLRKHTY+DELEQSKRN+  +  
Sbjct: 119 RDAVTNFKQVN----ETEDDEIEAAFLNAHSKAEIVDMLRKHTYSDELEQSKRNHRSNNG 174

Query: 176 ANGKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL 235
            NGK+       +  +   G  RVLKAR+QLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL
Sbjct: 175 GNGKQYKNTANYENNSYDHGCGRVLKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL 234

Query: 236 QSGS--TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFH 293
           QS S  ++KG+LLN EDV+GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIV F 
Sbjct: 235 QSTSSNSTKGVLLNLEDVSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVCFQ 294

Query: 294 RSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNN 353
           RSTG D QLYIDWKAR G   N V+PVQM+RLFGVNIF +PG       + GC       
Sbjct: 295 RSTGPDNQLYIDWKARCG--SNQVQPVQMVRLFGVNIFNVPGM------ENGC------- 339

Query: 354 NGKR-LREMELLSL--ECSKKQRMIGAL 378
           +GKR +R+MELLS+  + SKKQR++GAL
Sbjct: 340 DGKRSIRDMELLSIDRQYSKKQRIVGAL 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253560642|gb|ACT33043.1| RAV transcription factor [Camellia sinensis]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/382 (68%), Positives = 306/382 (80%), Gaps = 29/382 (7%)

Query: 6   MDGSCMDESTTTDS-----ASTSPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVE 60
           MDGSC+DESTT+DS     AS S  I   A+     SP+SLCRVGSG S+++   E G E
Sbjct: 1   MDGSCIDESTTSDSLSIALASASTSILL-ATKTKASSPKSLCRVGSGTSAILDSLEGGAE 59

Query: 61  AESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDA 120
           AESRKLPSS++KGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYDIAAQRFRGRDA
Sbjct: 60  AESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDA 119

Query: 121 VTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNY---GLDAN 177
           VTNFK +S    + +  ++E  FL+SHSKSEIVDMLRKHTYNDE EQS++NY    ++ N
Sbjct: 120 VTNFKPLS---ENEEQDELETLFLNSHSKSEIVDMLRKHTYNDEPEQSRKNYIGGFINNN 176

Query: 178 GKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS 237
           G +  K    + + T + ++  +KA +QLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS
Sbjct: 177 GNK--KACCNEKSTTNYKNN--VKATEQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS 232

Query: 238 GSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTG 297
            +TSKG+LLNF+DV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEK+LKAGDIVSF+RSTG
Sbjct: 233 ETTSKGVLLNFKDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVSFYRSTG 292

Query: 298 GDRQLYIDWKARTGPIENP-VEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNNNGK 356
            D QL+IDWK R G   NP V+PVQM+RLFGVNIFK+P +G  G+D        +N  GK
Sbjct: 293 SDNQLFIDWKPRNG--SNPVVQPVQMVRLFGVNIFKVPISG--GLD--------SNCGGK 340

Query: 357 RLREMELLSLECSKKQRMIGAL 378
           R+REMELL+LECSKK R+IGAL
Sbjct: 341 RMREMELLALECSKKVRVIGAL 362

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099325|ref|XP_002311438.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222851258|gb|EEE88805.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/390 (68%), Positives = 303/390 (77%), Gaps = 38/390 (9%)

Query: 6   MDGSCMDESTTTDSASTSPPITFPASIPPTKS---------PESLCRVGSGASSVILDSE 56
           MDGSC+DESTT+   ST   I+   +               PESLCRVGSG +SVILD E
Sbjct: 1   MDGSCVDESTTS---STDNSISITPTSLTPSPPPATTTKSPPESLCRVGSG-NSVILDLE 56

Query: 57  AGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFR 116
            GVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYD AAQRFR
Sbjct: 57  LGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDTAAQRFR 116

Query: 117 GRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLD- 175
           GRDAVTNFKQ++     ++D +IE AFL +HSK+EIVDMLRKHTY+DELEQSKRN   + 
Sbjct: 117 GRDAVTNFKQVN----ETEDDEIEAAFLITHSKAEIVDMLRKHTYSDELEQSKRNQRSNN 172

Query: 176 -ANGKRVIKHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFP 234
             NGK+       +  +   G  RVLKAR+QLFEKAVTPSDVGKLNRLVIPKQHAEKHFP
Sbjct: 173 GVNGKQYKNTANYESNSYDHGCGRVLKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFP 232

Query: 235 LQSGS--TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF 292
           LQS S  ++KG+LLN ED++GKVWRFRYSYWNSSQSYVLTKGWSRFVKEK+LKAGDIV F
Sbjct: 233 LQSTSSCSTKGVLLNLEDMSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVCF 292

Query: 293 HRSTGGDRQLYIDWKARTGPIE-NPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNN 351
            RSTG D+QLYIDWKAR+G  +  PV+P+QM+RLFGVNIF +PG       + GC     
Sbjct: 293 QRSTGPDKQLYIDWKARSGSNQVQPVQPIQMVRLFGVNIFNVPGM------ENGC----- 341

Query: 352 NNNGKR-LREMELLSL--ECSKKQRMIGAL 378
             NGKR +REMELLSL  + SKKQR+IGAL
Sbjct: 342 --NGKRSVREMELLSLDHQYSKKQRIIGAL 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194475604|gb|ACF74549.1| RAV [Nicotiana tabacum]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/388 (68%), Positives = 309/388 (79%), Gaps = 25/388 (6%)

Query: 6   MDGSC-MDESTTTDSASTSPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESR 64
           M+GS  +DESTT+DS S +P I+  +++P  KSPESLCR+GSG +SVI+D+E GVEAESR
Sbjct: 1   MEGSSSIDESTTSDSLSIAPAIS-TSTLPVMKSPESLCRMGSG-TSVIIDAENGVEAESR 58

Query: 65  KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNF 124
           KLPSS+Y+GVVPQPNGRWGAQIYEKHQRVWLGTFNEE EAARAYD+AAQRFRGRDAVTNF
Sbjct: 59  KLPSSRYEGVVPQPNGRWGAQIYEKHQRVWLGTFNEENEAARAYDVAAQRFRGRDAVTNF 118

Query: 125 KQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKH 184
           K +     + ++ D+E+AFL+SHSK+EIVDMLRKHTY DELEQSK+NYG   +GKR   +
Sbjct: 119 KPLL---ENEENDDMEIAFLNSHSKAEIVDMLRKHTYIDELEQSKKNYGFSKDGKRT--Y 173

Query: 185 GEGDGAATAFGS--DRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSK 242
              DG  ++F S  D+V KAR+QLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ+G+TSK
Sbjct: 174 CTKDGLMSSFFSSVDKVNKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQNGNTSK 233

Query: 243 GLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQL 302
           G+LLNFED+ GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF RSTG D+QL
Sbjct: 234 GVLLNFEDLNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGEDKQL 293

Query: 303 YIDWKARTG-PIENPV---------EPVQMMRLFGVNIFKIPGNGLVGVDKIGCNIN--- 349
           YID+KAR   P  +P            VQM+RLFGVNI K+P    V ++    N N   
Sbjct: 294 YIDFKARNATPTISPTVASQVQVQVPQVQMVRLFGVNICKVPAVNNVVINNNNNNNNDNN 353

Query: 350 -NNNNNGKRLREMELLSLE-CSKKQRMI 375
             + + GKR  EMELL+ E C KKQR+I
Sbjct: 354 MTSCSGGKRRIEMELLTFESCRKKQRVI 381

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668949|gb|ADE41129.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/375 (70%), Positives = 282/375 (75%), Gaps = 44/375 (11%)

Query: 40  SLCRVGSGASSVILDSE-------AGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQR 92
           SLCR+GSGASSVILD E        GVEAESRKLPSS+YKGVVPQPNGRWGAQIYEKHQR
Sbjct: 40  SLCRIGSGASSVILDPELSSSGGTGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQR 99

Query: 93  VWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDD---GDIEMAFLSSHSK 149
           VWLGTFNEE+EAARAYD+AAQRFRGRDAVTNFK  S    SSDD    D E AFLS HSK
Sbjct: 100 VWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPSSAEPISSDDEENDDAEAAFLSCHSK 159

Query: 150 SEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGAATAFGSDR--VLKARDQLF 207
           SEIVDMLRKHTYNDELEQSKRN    A GKR       +G+   FG+D   V KAR+QLF
Sbjct: 160 SEIVDMLRKHTYNDELEQSKRNN--SAYGKR----SRSNGSLGLFGTDNSGVPKAREQLF 213

Query: 208 EKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS----------KGLLLNFEDVTGKVWR 257
           EKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS +          KG+LLNFEDV GKVWR
Sbjct: 214 EKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSAATLTVSASTACKGVLLNFEDVGGKVWR 273

Query: 258 FRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKAR-------- 309
           FRYSYWNSSQSYVLTKGWSRFVKEKNL AGDIVSF RSTG D+QLYIDWKAR        
Sbjct: 274 FRYSYWNSSQSYVLTKGWSRFVKEKNLMAGDIVSFQRSTGPDKQLYIDWKARMSVNNTNN 333

Query: 310 --TGPIENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINN----NNNNGKRLREMEL 363
             + P++  V PV M+RLFGVNIFKIPG+   G              NNN GKR+REMEL
Sbjct: 334 NGSSPVQ--VGPVPMVRLFGVNIFKIPGSSGPGSADAAAAAAIGGGCNNNIGKRMREMEL 391

Query: 364 LSLECSKKQRMIGAL 378
           L LE  KK R+IGAL
Sbjct: 392 LELEFGKKPRIIGAL 406

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2012438	352	RAV2 "related to ABI3/VP1 2" [	0.817	0.877	0.681	4.2e-111
TAIR|locus:2031185	361	TEM1 "TEMPRANILLO 1" [Arabidop	0.812	0.850	0.642	2.8e-105
TAIR|locus:2205319	344	RAV1 "related to ABI3/VP1 1" [	0.846	0.930	0.638	1.1e-103
TAIR|locus:2085969	333	EDF3 "ethylene response DNA bi	0.740	0.840	0.646	1.6e-93
TAIR|locus:2041404	310	NGA1 "NGATHA1" [Arabidopsis th	0.314	0.383	0.680	2.8e-41
TAIR|locus:2200950	358	NGA3 "NGATHA3" [Arabidopsis th	0.338	0.357	0.622	2.3e-39
TAIR|locus:2026058	352	AT1G51120 [Arabidopsis thalian	0.576	0.619	0.417	6.1e-39
TAIR|locus:2079537	299	NGA2 "NGATHA2" [Arabidopsis th	0.283	0.357	0.7	9.9e-39
TAIR|locus:2015832	337	AT1G50680 [Arabidopsis thalian	0.571	0.640	0.406	2.1e-38
TAIR|locus:2164215	282	DPA4 "DEVELOPMENT-RELATED PcG	0.283	0.379	0.632	5.7e-38

TAIR|locus:2012438 RAV2 "related to ABI3/VP1 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 227/333 (68%), Positives = 258/333 (77%)

Query:     6 MDGSCMDEXXXXXXXXXXPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRK 65
             MD SC+DE                 S PP  +   L R+GSG SSV+LD E G+E ESRK
Sbjct:     1 MDSSCIDEISSSTSESFSATTAKKLSPPPAAALR-LYRMGSGGSSVVLDPENGLETESRK 59

Query:    66 LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFK 125
             LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNE+EEAAR+YDIAA RFRGRDAV NFK
Sbjct:    60 LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEQEEAARSYDIAACRFRGRDAVVNFK 119

Query:   126 QISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQS-KRNYGL--DANGKRVI 182
              +       +DGD+  AFL +HSK+EIVDMLRKHTY DELEQ+ KR   L  DANGKR  
Sbjct:   120 NVL------EDGDL--AFLEAHSKAEIVDMLRKHTYADELEQNNKRQLFLSVDANGKR-- 169

Query:   183 KHGEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS--T 240
                  +G++T   +D+VLK R+ LFEKAVTPSDVGKLNRLVIPKQHAEKHFPL S S   
Sbjct:   170 -----NGSSTT-QNDKVLKTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAV 223

Query:   241 SKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDR 300
             +KG+L+NFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+V+F RSTG +R
Sbjct:   224 TKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLER 283

Query:   301 QLYIDWKARTGPIENPVEPVQMMRLFGVNIFKI 333
             QLYIDWK R+GP ENPV+ V  +RLFGV+IF +
Sbjct:   284 QLYIDWKVRSGPRENPVQVV--VRLFGVDIFNV 314

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2031185 TEM1 "TEMPRANILLO 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 221/344 (64%), Positives = 251/344 (72%)

Query:     6 MDGSCMDEXXXXXXX---XXXP-PITFPA---SIPPTKSPESLCRVGSGASSVILDSEAG 58
             M+ SC+D+             P P T      S PP  S   L R+GSG SSV+LDSE G
Sbjct:     1 MEYSCVDDSSTTSESLSISTTPKPTTTTEKKLSSPPATSMR-LYRMGSGGSSVVLDSENG 59

Query:    59 VEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGR 118
             VE ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAA +YDIA +RFRGR
Sbjct:    60 VETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGR 119

Query:   119 DAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANG 178
             DAVTNFK      +  D  D E AFL +HSK+EIVDMLRKHTY DE EQS+R + ++ +G
Sbjct:   120 DAVTNFK------SQVDGNDAESAFLDAHSKAEIVDMLRKHTYADEFEQSRRKF-VNGDG 172

Query:   179 KRVIKHGEGDGAATA-FGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS 237
             KR        G  TA +G+D VL+AR+ LFEK VTPSDVGKLNRLVIPKQHAEKHFPL +
Sbjct:   173 KR-------SGLETATYGNDAVLRAREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPA 225

Query:   238 GSTS--------KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDI 289
              +T+        KG+L+N ED TGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+
Sbjct:   226 MTTAMGMNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDV 285

Query:   290 VSFHRSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKI 333
             V F RSTG DRQLYI WK R+ P++  V      RLFGVNIF +
Sbjct:   286 VCFERSTGPDRQLYIHWKVRSSPVQTVV------RLFGVNIFNV 323

GO:0003677 "DNA binding" evidence=IEA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009873 "ethylene mediated signaling pathway" evidence=NAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2205319 RAV1 "related to ABI3/VP1 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 219/343 (63%), Positives = 254/343 (74%)

Query:     6 MDGSCMDEXXXXXXXXXXPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRK 65
             M+ S +DE           P   PA      S  +L R+GSG SSV+LDSE GVEAESRK
Sbjct:     1 MESSSVDESTTSTGSICETPAITPAK---KSSVGNLYRMGSG-SSVVLDSENGVEAESRK 56

Query:    66 LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFK 125
             LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYD+A  RFR RDAVTNFK
Sbjct:    57 LPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRRDAVTNFK 116

Query:   126 QISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKR-VIKH 184
              +        D D E+ FL+SHSKSEIVDMLRKHTYN+ELEQSKR    + N  R ++  
Sbjct:   117 DVKM------DED-EVDFLNSHSKSEIVDMLRKHTYNEELEQSKRRRNGNGNMTRTLLTS 169

Query:   185 G-EGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-K 242
             G   DG +T  G     ++ + LFEKAVTPSDVGKLNRLVIPK HAEKHFPL S + S K
Sbjct:   170 GLSNDGVSTT-G----FRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVK 224

Query:   243 GLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQL 302
             G+LLNFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+VSF RS G D+QL
Sbjct:   225 GVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQL 284

Query:   303 YIDWKARTGPIENPVEPVQMMRLFGVNIF-KIPGNGLVGVDKI 344
             YI WK+R+G   + ++  +++RLFGVNI  +   N +VG  ++
Sbjct:   285 YIGWKSRSG---SDLDAGRVLRLFGVNISPESSRNDVVGNKRV 324

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2085969 EDF3 "ethylene response DNA binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 201/311 (64%), Positives = 234/311 (75%)

Query:    31 SIPPTKS--PESLC-RVGSGASSVILDSEAGVE----AESRKLPSSKYKGVVPQPNGRWG 83
             SIP  KS  P SL  R+GSG +SV+LDSE GVE    AESRKLPSS++KGVVPQPNGRWG
Sbjct:    16 SIPARKSSSPASLLYRMGSG-TSVVLDSENGVEVEVEAESRKLPSSRFKGVVPQPNGRWG 74

Query:    84 AQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAF 143
             AQIYEKHQRVWLGTFNEE+EAARAYD+AA RFRGRDAVTNFK      T+ ++   E+ F
Sbjct:    75 AQIYEKHQRVWLGTFNEEDEAARAYDVAAHRFRGRDAVTNFKD-----TTFEE---EVEF 126

Query:   144 LSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGAA-TAFGSDRVLKA 202
             L++HSKSEIVDMLRKHTY +EL+Q KRN   D NGK             T F      K 
Sbjct:   127 LNAHSKSEIVDMLRKHTYKEELDQRKRNR--DGNGKETTAFALASMVVMTGF------KT 178

Query:   203 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFR 259
              + LFEK VTPSDVGKLNRLVIPK  AEKHFPL  G+ +   KG+LLNFEDV GKVWRFR
Sbjct:   179 AELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFR 238

Query:   260 YSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENPVEP 319
             YSYWNSSQSYVLTKGWSRFVKEK L AGD++SF RS   D++ +I WK+++G ++  +E 
Sbjct:   239 YSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFIGWKSKSG-LD--LET 295

Query:   320 VQMMRLFGVNI 330
              ++MRLFGV+I
Sbjct:   296 GRVMRLFGVDI 306

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2041404 NGA1 "NGATHA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 83/122 (68%), Positives = 97/122 (79%)

Query:   198 RVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWR 257
             R +  R+ +F+K VTPSDVGKLNRLVIPKQHAE+ FPL S S  KGLLLNFED+TGK WR
Sbjct:    26 REVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSSNEKGLLLNFEDLTGKSWR 85

Query:   258 FRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR---STGGDRQLYIDWKARTGPIE 314
             FRYSYWNSSQSYV+TKGWSRFVK+K L AGDIVSF R    +G D +L+IDW+ R    +
Sbjct:    86 FRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDWRRRPKVPD 145

Query:   315 NP 316
             +P
Sbjct:   146 HP 147

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2200950 NGA3 "NGATHA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 84/135 (62%), Positives = 99/135 (73%)

Query:   203 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSY 262
             ++ +F+K VTPSDVGKLNRLVIPKQHAE++FPL S +   G LLNF+D  GK+WRFRYSY
Sbjct:    52 KEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSY 111

Query:   263 WNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQ---LYIDWKARTGPIENPVEP 319
             WNSSQSYV+TKGWSRFVKEK L AGDIVSF R  G + +   LYIDW+ R  P  + V+ 
Sbjct:   112 WNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHR--PDMSLVQA 169

Query:   320 VQMMRLFGVNIFKIP 334
              Q    FG N F  P
Sbjct:   170 HQFGN-FGFN-FNFP 182

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2026058 AT1G51120 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 99/237 (41%), Positives = 137/237 (57%)

Query:    68 SSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQI 127
             ++K+KGVV Q NG WGAQIY  H+R+WLGTF    EAA AYD A+ + R  DA  + +  
Sbjct:    44 TTKFKGVVQQQNGHWGAQIYADHRRIWLGTFKSAHEAAAAYDSASIKLRSFDA-NSHRNF 102

Query:   128 SCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELE---QSKRNYGLDANGKRVIKH 184
               +  +  + D +  + +    + I D   +H + D L    Q   N  +    K+V+  
Sbjct:   103 PWSDFTLHEPDFQECYTTEAVLNMIRDGSYQHKFRDFLRIRSQIVANINI-VGSKQVLGG 161

Query:   185 GEGDGAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS----- 239
             GEG G      S++      QLF+K +TPSDVGKLNRLVIPK++A K+ P  S       
Sbjct:   162 GEG-GQE----SNKCFSCT-QLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISDDQSEKE 215

Query:   240 TSKGLL---LNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFH 293
             TS+G+    + F D   + W+FRY YW SSQS+V T+GW+ FVKEKNLK  DI+ F+
Sbjct:   216 TSEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDIIVFY 272

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2079537 NGA2 "NGATHA2" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 77/110 (70%), Positives = 91/110 (82%)

Query:   203 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFR 259
             R+ +F+K VTPSDVGKLNRLVIPKQHAE++FPL + +T+   KGLLLNFED +G  WRFR
Sbjct:    19 REHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRFR 78

Query:   260 YSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKAR 309
             YSYWNSSQSYV+TKGWSRFVK+K L AGDIVSF R +    +LYIDW+ R
Sbjct:    79 YSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRR 128

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2015832 AT1G50680 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 96/236 (40%), Positives = 139/236 (58%)

Query:    70 KYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISC 129
             KYKGVV Q NG WGAQIY  H+R+WLGTF   +EAA AYD A+ + R  DA  + +    
Sbjct:    27 KYKGVVQQQNGHWGAQIYADHKRIWLGTFKSADEAATAYDSASIKLRSFDA-NSHRNFPW 85

Query:   130 AGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDELE-QSKRNYGLDANGKRVIKHGEGD 188
             +  + ++ D +  + +    + I D   +H + D L  +S+    ++  G +  + GE +
Sbjct:    86 STITLNEPDFQNCYTTETVLNMIRDGSYQHKFRDFLRIRSQIVASINIGGPKQAR-GEVN 144

Query:   189 GAATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSK---GLL 245
                    SD+      QLF+K +TPSDVGKLNRLVIPK++A K+ P  S   S+   G +
Sbjct:   145 QE-----SDKCFSCT-QLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISADQSEKEEGEI 198

Query:   246 L-NFEDV-------TGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFH 293
             + + EDV         + W+FRY YW SSQS+V T+GW+ FVKEKNLK  D+++F+
Sbjct:   199 VGSVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKEKNLKEKDVIAFY 254

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2164215 DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 74/117 (63%), Positives = 89/117 (76%)

Query:   203 RDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQS----------GSTSKGLLLNFEDVT 252
             ++ LFEK++TPSDVGKLNRLVIPKQHAEK+FPL +           S+ KG+LL+FED +
Sbjct:    42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDES 101

Query:   253 GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKAR 309
             GK WRFRYSYWNSSQSYVLTKGWSRFVK+K L  GD+V F R     R+L+I W+ R
Sbjct:   102 GKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRR 158

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010073 "meristem maintenance" evidence=IMP

GO:0010358 "leaf shaping" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048366 "leaf development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RZX9	Y1934_ORYSJ	No assigned EC number	0.5709	0.7645	0.7353	yes	no
P82280	RAV2_ARATH	No assigned EC number	0.6387	0.9074	0.9744	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	RAV1	AP2 domain-containing transcription factor (367 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	RAPF1	AP2 domain-containing transcription factor (153 aa)							•		0.686
	CAM2	RecName- Full=Caffeoyl-CoA O-methyltransferase 2; EC=2.1.1.104; AltName- Full=Trans-caffeoyl-Co [...] (248 aa)							•		0.510
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)							•		0.500

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
pfam02362	97	pfam02362, B3, B3 DNA binding domain	4e-31
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	2e-27
smart01019	96	smart01019, B3, B3 DNA binding domain	1e-26
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-26
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	6e-26
cd10015	109	cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o	4e-11
pfam00847	53	pfam00847, AP2, AP2 domain	6e-08

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score =  113 bits (285), Expect = 4e-31
 Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 5/98 (5%)

Query: 207 FEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSS 266
           F K +TPSDV K  RLV+PK+ AE++   + G       +   D  GK W  +  Y  S 
Sbjct: 1   FVKVLTPSDVSKDGRLVLPKKFAEENGLNKKGQE-----ITLLDPDGKSWTVKLRYRKSG 55

Query: 267 QSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYI 304
           + Y+LT GW  FVK   LKAGD + F    GG   + I
Sbjct: 56  RRYLLTSGWKEFVKANGLKAGDSLVFKLDGGGKFVVGI 93

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score =  103 bits (259), Expect = 2e-27
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 206 LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNS 265
           LF K +TPSDV  L RLV+PK+ A+ H P + G       +  ED  GK W  +     +
Sbjct: 2   LFFKVLTPSDVSSLGRLVLPKKFAKAHLPPKEGVE-----VTLEDPDGKKWTVKLKKRKN 56

Query: 266 SQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYI 304
           S   VL+ GW  FV+   LK GD + F    G + +  +
Sbjct: 57  SGRMVLSGGWKEFVRANGLKEGDFLVFELD-GRNSKFKV 94

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score =  101 bits (254), Expect = 1e-26
 Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 207 FEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSS 266
           F K +T SDV K  RLV+PKQ AE + P           +   D  GK W+ +  Y  SS
Sbjct: 1   FFKTLTTSDVSKHGRLVLPKQFAESNGPPLKPKE-----ITLLDPDGKSWKVKLKYRGSS 55

Query: 267 QSYVLTKGWSRFVKEKNLKAGDIVSFHR 294
             ++LT GW  FVK   LKAGD ++F  
Sbjct: 56  GMFLLTGGWKEFVKANGLKAGDSLTFEL 83

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  100 bits (250), Expect = 2e-26
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 70  KYKGVVPQPNGRWGAQIYE--KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQI 127
           KY+GV  +P G+W A+I +  K +RVWLGTF+  EEAARAYD AA +FRGR A  NF   
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 128 S 128
            
Sbjct: 61  L 61

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 98.5 bits (246), Expect = 6e-26
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 2/58 (3%)

Query: 69  SKYKGVVPQPNGRWGAQIYE--KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNF 124
           SKY+GV  +P G+W A+I +    +R+WLGTF+  EEAARAYD AA + RG  AV NF
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins

 Score = 59.2 bits (143), Expect = 4e-11
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 212 TPSDVGKLNRLVIPKQHAEKHFPLQSGSTSK--GLLLNFEDV-TGKVWRFRYSYWNSSQS 268
           T +  G    L IPK   EK  P  + +      + L   D+   + W  R  ++NS+++
Sbjct: 12  TGATGGHQVGLYIPKGIVEKFPPSINHTREANPSIFLTMHDISDCRDWEARAIFYNSNRN 71

Query: 269 YV-LTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYI 304
              LT+G   FVK+  L  GD+         D++  I
Sbjct: 72  EKRLTRGGRGFVKQNPLNTGDLTLIAFD--LDKEYNI 106

This family contains the N-terminal DNA binding domain of type IIE restriction endonuclease EcoRII-like proteins, the C-terminal DNA binding domain of type IIS restriction endonuclease BfiI-like proteins and plant-specific B3 proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). BfiI is unique in cleaving DNA at fixed positions downstream of an asymmetric sequence in the absence of Mg2+. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. B3 proteins are a family of plant-specific transcription factors, involved in a great variety of processes, including seed development and auxin response. Length = 109

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 69  SKYKGVVPQPN-GRWGAQIYE----KHQRVWLGTFNEEEEAARAYDIAAQRFRG 117
           S YKGV      GRW A+I +    K +R  LGTF   EEAARA   A  + RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTF-GTEEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.78
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.77
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.75
PHA00280	121	putative NHN endonuclease	99.52
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.92
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	98.81
PF09217	156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	98.05

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.78  E-value=2.4e-18  Score=140.80  Aligned_cols=98  Identities=34%  Similarity=0.577  Sum_probs=73.6

Q ss_pred             eeeccccCCCCCCCceeechhhHhhcCCCCCCCCCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhhcCCCC
Q 017035          207 FEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKA  286 (378)
Q Consensus       207 F~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~k~Lk~  286 (378)
                      |.|+|+++|+...++|.||++++++|...    ...++.+.++|..|++|.+++++++.+..|+|++||.+||++|+|++
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~~~----~~~~~~v~l~~~~g~~W~v~~~~~~~~~~~~l~~GW~~Fv~~n~L~~   76 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHGGN----KRKSREVTLKDPDGRSWPVKLKYRKNSGRYYLTGGWKKFVRDNGLKE   76 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS------SS--CEEEEEETTTEEEEEEEEEECCTTEEEEETTHHHHHHHCT--T
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhCCC----cCCCeEEEEEeCCCCEEEEEEEEEccCCeEEECCCHHHHHHHcCCCC
Confidence            88999999999889999999999988211    12347899999999999999999988888999999999999999999


Q ss_pred             CCEEEEEEecCCCceEEEEEee
Q 017035          287 GDIVSFHRSTGGDRQLYIDWKA  308 (378)
Q Consensus       287 GD~I~F~r~~~~~~~l~i~~r~  308 (378)
                      ||+|+|+...+....+.+.+-+
T Consensus        77 GD~~~F~~~~~~~~~~~v~i~~   98 (100)
T PF02362_consen   77 GDVCVFELIGNSNFTLKVHIFR   98 (100)
T ss_dssp             T-EEEEEE-SSSCE-EEEEEE-
T ss_pred             CCEEEEEEecCCCceEEEEEEE
Confidence            9999999986555545555543

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.77  E-value=4.9e-19  Score=134.69  Aligned_cols=59  Identities=54%  Similarity=0.929  Sum_probs=56.6

Q ss_pred             CceEEeEECCCCeEEEEEEeC--CeEEEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 017035           69 SKYKGVVPQPNGRWGAQIYEK--HQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQI  127 (378)
Q Consensus        69 S~yrGV~~~~~grW~A~I~~~--gkr~~LGtf~t~EeAArAYD~Aa~~~~G~~a~~NFp~~  127 (378)
                      |+|+||+++++|+|+|+|+.+  ++++|||+|+|+||||+|||.|+++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            689999999899999999998  99999999999999999999999999999999999973

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.75  E-value=4e-18  Score=131.16  Aligned_cols=60  Identities=57%  Similarity=0.928  Sum_probs=57.1

Q ss_pred             ceEEeEECCCCeEEEEEEe--CCeEEEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 017035           70 KYKGVVPQPNGRWGAQIYE--KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQISC  129 (378)
Q Consensus        70 ~yrGV~~~~~grW~A~I~~--~gkr~~LGtf~t~EeAArAYD~Aa~~~~G~~a~~NFp~~~~  129 (378)
                      +|+||+++++|+|+|+|+.  .++++|||+|+|+||||+|||.|+++++|..+.+|||...|
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            5899998889999999999  99999999999999999999999999999999999999664

>PHA00280 putative NHN endonuclease

Probab=99.52  E-value=1.6e-14  Score=124.68  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=65.2

Q ss_pred             ceecccccccccccCCCCCCceEEeEEC-CCCeEEEEEEeCCeEEEecCCCCHHHHHHHHHHHHHhhcCCCCC
Q 017035           50 SVILDSEAGVEAESRKLPSSKYKGVVPQ-PNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAV  121 (378)
Q Consensus        50 s~v~~~en~~n~~~~~~~~S~yrGV~~~-~~grW~A~I~~~gkr~~LGtf~t~EeAArAYD~Aa~~~~G~~a~  121 (378)
                      ..++.++|..|++.++.++|+|+||+++ ..|||.|+|+.+||+++||.|+++|+|+.||+ ++.+++|.+|.
T Consensus        48 r~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         48 RLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            4577899999999999999999999987 57999999999999999999999999999997 77899998874

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.92  E-value=1.6e-09  Score=80.53  Aligned_cols=50  Identities=44%  Similarity=0.554  Sum_probs=45.0

Q ss_pred             CceEEeEECC-CCeEEEEEEeC-----CeEEEecCCCCHHHHHHHHHHHHHhhcCC
Q 017035           69 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDIAAQRFRGR  118 (378)
Q Consensus        69 S~yrGV~~~~-~grW~A~I~~~-----gkr~~LGtf~t~EeAArAYD~Aa~~~~G~  118 (378)
                      |+|+||++++ .++|.|+|++.     +++++||.|++++||++||+.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999885 79999999982     49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=98.81  E-value=8.8e-09  Score=88.36  Aligned_cols=80  Identities=25%  Similarity=0.517  Sum_probs=67.1

Q ss_pred             ccccceeeeccccCCCC-CCCceeechhhHhhcCCCCCCC-------------CCCceEEEEEeCCCCeEEEEEEEecC-
Q 017035          201 KARDQLFEKAVTPSDVG-KLNRLVIPKQHAEKHFPLQSGS-------------TSKGLLLNFEDVTGKVWRFRYSYWNS-  265 (378)
Q Consensus       201 ~~~~~lF~K~LT~SDV~-~~~rLvIPk~~ae~~lP~~~~~-------------~~~gv~l~v~D~~Gk~W~Fr~s~~~~-  265 (378)
                      .+...+|.|+|+.|||. +++||.||...+.. ..+|...             ...|+.+.++|..++.|..+++.|.- 
T Consensus        18 ~d~kli~~K~L~~tDv~~~qsRLsmP~~qi~~-~dFLt~eE~~~i~~~~~~~~~~~Gv~V~lvdp~~~~~~m~lkkW~mg   96 (114)
T PF03754_consen   18 EDPKLIIEKTLFKTDVDPHQSRLSMPFNQIID-NDFLTEEEKRIIKEEKKNNDKKKGVEVILVDPSLRKWTMRLKKWNMG   96 (114)
T ss_pred             CCCeEEEeeeecccCCCCCCceeeccHHHhcc-cccCCHHHHHHHHHhhccCcccCCceEEEECCcCcEEEEEEEEeccc
Confidence            35689999999999998 88999999888744 2444421             45689999999999999999999965 


Q ss_pred             --CCceEEecCHHHHHhh
Q 017035          266 --SQSYVLTKGWSRFVKE  281 (378)
Q Consensus       266 --s~~yvLt~GW~~FVk~  281 (378)
                        ...|+|..||.++|++
T Consensus        97 ~~~~~YvL~~gWn~VV~~  114 (114)
T PF03754_consen   97 NGTSNYVLNSGWNKVVED  114 (114)
T ss_pred             CCceEEEEEcChHhhccC
Confidence              5789999999999864

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=98.05  E-value=1.5e-05  Score=71.35  Aligned_cols=90  Identities=20%  Similarity=0.344  Sum_probs=58.5

Q ss_pred             ccceeeeccccCCCC----CCCceeechhhHhhcCCCCCCC--CCCceEEEEEeCCC--CeEEEEEEEecC------CCc
Q 017035          203 RDQLFEKAVTPSDVG----KLNRLVIPKQHAEKHFPLQSGS--TSKGLLLNFEDVTG--KVWRFRYSYWNS------SQS  268 (378)
Q Consensus       203 ~~~lF~K~LT~SDV~----~~~rLvIPk~~ae~~lP~~~~~--~~~gv~l~v~D~~G--k~W~Fr~s~~~~------s~~  268 (378)
                      -..+|.|.|++.|++    |+..++|||..++.+||.+...  ..+.++|.+.+..+  ..|+||++|.|+      ...
T Consensus         6 ~~~~~~K~LSaNDtGaTGgHQaGiyIpk~~~~~lFp~~~~~~~~Np~~~~~~~~~s~~~~~~~~r~iYYnn~~~~gTRNE   85 (156)
T PF09217_consen    6 SWAIYCKRLSANDTGATGGHQAGIYIPKSAAELLFPSINHTKEENPDIWLKARWQSHFVTDSQVRFIYYNNRLFGGTRNE   85 (156)
T ss_dssp             SEEEEEEE--CCCCTTTSSS--EEEE-HHHHHHH-GGG-SSSSSS-EEEEEEEETTTT---EEEEEEEE-CCCTTSS--E
T ss_pred             ceEEEEEEccCCCCCCcCcccceeEecccHHHHhCCCCCcccccCCceeEEEEECCCCccceeEEEEEEcccccCCCcCc
Confidence            356899999999998    8889999999999999886643  45678999998877  568899999987      477


Q ss_pred             eEEecCHHHHHh-hcCCCCCCEEEEE
Q 017035          269 YVLTKGWSRFVK-EKNLKAGDIVSFH  293 (378)
Q Consensus       269 yvLt~GW~~FVk-~k~Lk~GD~I~F~  293 (378)
                      |.||. |..... .+-=.+||.++|-
T Consensus        86 ~RIT~-~G~~~~~~~~~~tGaL~vla  110 (156)
T PF09217_consen   86 YRITR-FGRGFPLQNPENTGALLVLA  110 (156)
T ss_dssp             EEEE----TTSGGG-GGGTT-EEEEE
T ss_pred             eEEee-ecCCCccCCccccccEEEEE
Confidence            99986 777333 2334689998886

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the N-terminal effector-binding domain of the type II restriction endonuclease EcoRII, which has a DNA recognition fold, allowing for binding to 5'-CCWGG sequences. It assumes a structure composed of an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. The domain represented by this entry is only found in bacterial proteins.; PDB: 3HQF_A 1NA6_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
1wid_A	130	Solution Structure Of The B3 Dna-Binding Domain Of		2e-48
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		6e-07
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-06

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Iteration: 1
 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 98/109 (89%), Gaps = 1/109 (0%)
Query: 204 DQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-KGLLLNFEDVTGKVWRFRYSY 262
           + LFEKAVTPSDVGKLNRLVIPK HAEKHFPL S + S KG+LLNFEDV GKVWRFRYSY
Sbjct: 11  EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 70
Query: 263 WNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTG 311
           WNSSQSYVLTKGWSRFVKEKNL+AGD+VSF RS G D+QLYI WK+R+G
Sbjct: 71  WNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 119

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 71  YKGVVPQPNGRWGAQIYEKHQ---RVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNF 124
           Y+GV  +P G++ A+I +  +   RVWLGTF   E+AA AYD AA R RG  A+ NF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 71  YKGVVPQPNGRWGAQIYEKHQ---RVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNF 124
           Y+GV  +P G++ A+I +  +   RVWLGTF   E+AA AYD AA R RG  A+ NF
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	9e-38
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-19
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score =  131 bits (331), Expect = 9e-38
 Identities = 89/112 (79%), Positives = 99/112 (88%), Gaps = 1/112 (0%)

Query: 201 KARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSK-GLLLNFEDVTGKVWRFR 259
           ++ + LFEKAVTPSDVGKLNRLVIPK HAEKHFPL S + S  G+LLNFEDV GKVWRFR
Sbjct: 8   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 67

Query: 260 YSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTG 311
           YSYWNSSQSYVLTKGWSRFVKEKNL+AGD+VSF RS G D+QLYI WK+R+G
Sbjct: 68  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 119

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 70  KYKGVVPQPNGRWGAQIYE---KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNF 124
            Y+GV  +P G++ A+I +      RVWLGTF   E+AA AYD AA R RG  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 104

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 207 FEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSS 266
           F K        K   L IP     ++FP     T         D +G+ W  R       
Sbjct: 11  FMKPFISEKSSK--SLEIPLGFN-EYFPAPFPITVD-----LLDYSGRSWTVRMKK--RG 60

Query: 267 QSYVLTKGWSRFVKEKNLKAGDIVSF 292
           +   LT GW  FVK+ NL+ G  + F
Sbjct: 61  EKVFLTVGWENFVKDNNLEDGKYLQF 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 41/288 (14%), Positives = 72/288 (25%), Gaps = 97/288 (33%)

Query: 45  GSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEA 104
           GSG + V LD                   V  + +     +I+      WL         
Sbjct: 160 GSGKTWVALDV-------------CLSYKVQCKMDF----KIF------WL-NLKNCNSP 195

Query: 105 ARAYDIAAQRFRGRDAVTNFKQISCAGTSSDDGDIEMAFLSSHSKSEIVDMLRKHTYNDE 164
               ++  Q+           QI    TS  D    +       ++E+  +L+   Y + 
Sbjct: 196 ETVLEML-QKL--------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 165 LEQSKRNYGL---DANGKRVIKHGEGDGAATAFGSD-RVL-KARDQLFEKAVTPSDVGKL 219
           L        L   +    +            AF    ++L   R     K VT   +   
Sbjct: 247 L--------LVLLNVQNAKAWN---------AFNLSCKILLTTRF----KQVT-DFLSAA 284

Query: 220 NRLVIPKQHAEKHFPLQSGSTSKGLLLNF----------EDVTG------------KVWR 257
               I   H        +    K LLL +          E +T             +   
Sbjct: 285 TTTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 258 FRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYID 305
             +  W       LT      +    L+  +           R+++  
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSL--NVLEPAEY----------RKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.97
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.86
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	99.74
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.64
1na6_A	404	Ecorii, restriction endonuclease ecorii; site-spec	93.96
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	89.19
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	86.12

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.97  E-value=1.3e-30  Score=225.55  Aligned_cols=117  Identities=76%  Similarity=1.252  Sum_probs=107.0

Q ss_pred             hccccceeeeccccCCCCCCCceeechhhHhhcCCCCCCC-CCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHH
Q 017035          200 LKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS-TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRF  278 (378)
Q Consensus       200 ~~~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~-~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~F  278 (378)
                      .+++.++|.|+||+|||+++++|+||++++++|||.++.. ..+++.|.++|.+|++|+|+|+||+++++|+|++||..|
T Consensus         7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F   86 (130)
T 1wid_A            7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF   86 (130)
T ss_dssp             -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred             CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence            4688999999999999998899999999999999999853 356799999999999999999999989999999999999


Q ss_pred             HhhcCCCCCCEEEEEEecCCCceEEEEEeeecCCCCCC
Q 017035          279 VKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENP  316 (378)
Q Consensus       279 Vk~k~Lk~GD~I~F~r~~~~~~~l~i~~r~~~~~~~~~  316 (378)
                      |++|+|++||+|+|+++.+++.+|+|++|++.+..+++
T Consensus        87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~~~  124 (130)
T 1wid_A           87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA  124 (130)
T ss_dssp             HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSSCC
T ss_pred             HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCCccc
Confidence            99999999999999999888899999999998765433

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.86  E-value=1.7e-22  Score=154.60  Aligned_cols=58  Identities=48%  Similarity=0.799  Sum_probs=55.2

Q ss_pred             ceEEeEECCCCeEEEEEEe---CCeEEEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 017035           70 KYKGVVPQPNGRWGAQIYE---KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQI  127 (378)
Q Consensus        70 ~yrGV~~~~~grW~A~I~~---~gkr~~LGtf~t~EeAArAYD~Aa~~~~G~~a~~NFp~~  127 (378)
                      +||||++++||||+|+|++   +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999   479999999999999999999999999999999999973

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=99.74  E-value=1.1e-17  Score=147.24  Aligned_cols=89  Identities=25%  Similarity=0.383  Sum_probs=78.1

Q ss_pred             cccceeeeccccCCCCCCCceeechhhHhhcCCCCCCCCCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhh
Q 017035          202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKE  281 (378)
Q Consensus       202 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~  281 (378)
                      ...+.|.|+||+|||.+.++|.||++++++|||...      ..+.+.|. |+.|.|+|+|++.  +++|++||..||++
T Consensus        44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d  114 (146)
T 4i1k_A           44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE  114 (146)
T ss_dssp             CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred             CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence            456899999999999988899999999999999764      35677787 5999999999863  79999999999999


Q ss_pred             cCCCCCCEEEEEEecCCC
Q 017035          282 KNLKAGDIVSFHRSTGGD  299 (378)
Q Consensus       282 k~Lk~GD~I~F~r~~~~~  299 (378)
                      |+|++||+|+|......+
T Consensus       115 n~L~~GD~cvFeli~~~~  132 (146)
T 4i1k_A          115 NNLGEGDVCVFELLRTRD  132 (146)
T ss_dssp             TTCCTTCEEEEEECSSSS
T ss_pred             cCCCCCCEEEEEEecCCc
Confidence            999999999998876433

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.64  E-value=6e-16  Score=128.15  Aligned_cols=85  Identities=25%  Similarity=0.422  Sum_probs=72.3

Q ss_pred             cccceeeeccccCCCCCCCceeechhhHhhcCCCCCCCCCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhh
Q 017035          202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKE  281 (378)
Q Consensus       202 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~  281 (378)
                      ...+.|.|+|+++|.  ..+|.||+.+++.|.|.+.      ..+.++|..|++|.++|+++  ..+++|++||.+||++
T Consensus         6 ~~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~------~~v~L~~~~G~~W~v~~~~~--~~~~~l~~GW~~Fv~~   75 (104)
T 1yel_A            6 TGEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP------ITVDLLDYSGRSWTVRMKKR--GEKVFLTVGWENFVKD   75 (104)
T ss_dssp             CCCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC------SEEEEEETTSCEEEEEEEEE--TTEEEECTTHHHHHHH
T ss_pred             CCCCCEEEEECCCCc--cceEECCHHHHHhcCccCC------CEEEEECCCCCEEEEEEEEE--CCcEEEccChHHHHHH
Confidence            345789999999994  4599999999977654433      35788999999999999976  4578999999999999


Q ss_pred             cCCCCCCEEEEEEec
Q 017035          282 KNLKAGDIVSFHRST  296 (378)
Q Consensus       282 k~Lk~GD~I~F~r~~  296 (378)
                      |+|++||.|+|....
T Consensus        76 ~~L~~GD~lvF~~~~   90 (104)
T 1yel_A           76 NNLEDGKYLQFIYDR   90 (104)
T ss_dssp             HTCCTTCEEEEEECS
T ss_pred             cCCCCCCEEEEEEcC
Confidence            999999999998764

>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A

Probab=93.96  E-value=0.051  Score=54.51  Aligned_cols=93  Identities=19%  Similarity=0.276  Sum_probs=67.5

Q ss_pred             cccceeeeccccCCCC----CCCceeechhhHhhcCCCCC-CC-CCCceEE--EEEeCCCCeEEEEEEEec------CCC
Q 017035          202 ARDQLFEKAVTPSDVG----KLNRLVIPKQHAEKHFPLQS-GS-TSKGLLL--NFEDVTGKVWRFRYSYWN------SSQ  267 (378)
Q Consensus       202 ~~~~lF~K~LT~SDV~----~~~rLvIPk~~ae~~lP~~~-~~-~~~gv~l--~v~D~~Gk~W~Fr~s~~~------~s~  267 (378)
                      .-...|.|.|+..|++    ++..+.||+..+..+||.+. .. ....+.+  .+-|.+.-.+.++++|.+      ...
T Consensus        16 ~~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRn   95 (404)
T 1na6_A           16 ENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRN   95 (404)
T ss_dssp             SSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCC
T ss_pred             ccchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCC
Confidence            3467899999999998    77789999988889998887 22 2222333  344554455599999996      346


Q ss_pred             ceEEecCHHH-HHhhcCCCCCCEEEEEEe
Q 017035          268 SYVLTKGWSR-FVKEKNLKAGDIVSFHRS  295 (378)
Q Consensus       268 ~yvLt~GW~~-FVk~k~Lk~GD~I~F~r~  295 (378)
                      .|.|+. |.+ +.--+...+||.++|-+.
T Consensus        96 EyRLt~-~~~~~~~~~~a~~GDLlvia~~  123 (404)
T 1na6_A           96 EKRITR-WGRGSPLQDPENTGALTLLAFK  123 (404)
T ss_dssp             EEEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred             ceEEee-cCCCCcccccCCCCCEEEEEEe
Confidence            799995 554 555578899999999765

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=89.19  E-value=0.0073  Score=53.49  Aligned_cols=57  Identities=9%  Similarity=-0.138  Sum_probs=39.5

Q ss_pred             eecccccccccccCCCCCCceEEeEECCCCeEEEEEEeCCeEEEecCCCCHHHHHHHHH
Q 017035           51 VILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYD  109 (378)
Q Consensus        51 ~v~~~en~~n~~~~~~~~S~yrGV~~~~~grW~A~I~~~gkr~~LGtf~t~EeAArAYD  109 (378)
                      .++.++|..++........ ++||.....++|.+.|..+ +..+||.|.+.+|||++|.
T Consensus        90 ~~t~~eN~~~~~~~~~~~~-~~g~~~~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           90 WVTQKINVENQMSRGTLNV-SKAQQIAKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             EECHHHHHHHHHHHTCCCC-HHHHHHHHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred             ECCHHHHhhcccccCcccc-eeeeeeccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence            4556777766554433322 4566442245688999888 7788999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=86.12  E-value=0.33  Score=37.86  Aligned_cols=28  Identities=32%  Similarity=0.330  Sum_probs=23.3

Q ss_pred             CCCCceEEeEECC-CCeEEEEEEeCCeEE
Q 017035           66 LPSSKYKGVVPQP-NGRWGAQIYEKHQRV   93 (378)
Q Consensus        66 ~~~S~yrGV~~~~-~grW~A~I~~~gkr~   93 (378)
                      ..+|+|.||++.+ .+.|.|+-.+++++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence            3579999999885 799999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	2e-38
d1na6a1	175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	2e-32
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-21
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	3e-19

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  131 bits (331), Expect = 2e-38
 Identities = 88/112 (78%), Positives = 98/112 (87%), Gaps = 1/112 (0%)

Query: 201 KARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFP-LQSGSTSKGLLLNFEDVTGKVWRFR 259
           ++ + LFEKAVTPSDVGKLNRLVIPK HAEKHFP   S  + KG+LLNFEDV GKVWRFR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 260 YSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTG 311
           YSYWNSSQSYVLTKGWSRFVKEKNL+AGD+VSF RS G D+QLYI WK+R+G
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 112

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  117 bits (295), Expect = 2e-32
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 16/152 (10%)

Query: 205 QLFEKAVTPSDVGKLNR----LVIPKQHAEKHFPL----QSGSTSKGLLLNFEDVTGKVW 256
            ++ K ++ +D G        L IP    EK FP     +  + S  L  +         
Sbjct: 16  FVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDS 75

Query: 257 RFRYSYWNSS------QSYVLTKGWSRFVKEKNLKAGD--IVSFHRSTGGDRQLYIDWKA 308
             R  Y+NS+          +T+       +     G   +++F     G     ++   
Sbjct: 76  EARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWV 135

Query: 309 RTGPIENPVEPVQMMRLFGVNIFKIPGNGLVG 340
                E  V    +  +    +   P   ++G
Sbjct: 136 CASTDEEDVIETAIGEVIPGALISGPAGQILG 167

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 85.1 bits (211), Expect = 1e-21
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 70  KYKGVVPQPNGRWGAQIYE---KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNF 124
            Y+GV  +P G++ A+I +      RVWLGTF   E+AA AYD AA R RG  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.5 bits (196), Expect = 3e-19
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYS 261
             +  F K        K   L IP    E        +      ++  D +G+ W  R  
Sbjct: 4   TGEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPFPIT------VDLLDYSGRSWTVRM- 54

Query: 262 YWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRS 295
                +   LT GW  FVK+ NL+ G  + F   
Sbjct: 55  -KKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYD 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.96
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.86
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	99.73
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.55

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.1e-28  Score=206.69  Aligned_cols=111  Identities=80%  Similarity=1.337  Sum_probs=103.5

Q ss_pred             cccceeeeccccCCCCCCCceeechhhHhhcCCCCCCC-CCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHh
Q 017035          202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS-TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVK  280 (378)
Q Consensus       202 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~-~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk  280 (378)
                      ...+||+|+||+|||++.+||+||++++++|||.++.. ..+++.|.+.|.+|++|+|+|++|+++++|+|+.||..||+
T Consensus         2 ~~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~   81 (117)
T d1wida_           2 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVK   81 (117)
T ss_dssp             CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHH
T ss_pred             CCceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHH
Confidence            46789999999999998899999999999999999854 45679999999999999999999998999999999999999


Q ss_pred             hcCCCCCCEEEEEEecCCCceEEEEEeeecCC
Q 017035          281 EKNLKAGDIVSFHRSTGGDRQLYIDWKARTGP  312 (378)
Q Consensus       281 ~k~Lk~GD~I~F~r~~~~~~~l~i~~r~~~~~  312 (378)
                      +|+|++||+|+|+|+..++.+++|.+|++++.
T Consensus        82 ~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          82 EKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             HTTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             HcCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            99999999999999988889999999999864

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=6.7e-23  Score=154.93  Aligned_cols=57  Identities=49%  Similarity=0.827  Sum_probs=54.2

Q ss_pred             ceEEeEECCCCeEEEEEEe---CCeEEEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 017035           70 KYKGVVPQPNGRWGAQIYE---KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQ  126 (378)
Q Consensus        70 ~yrGV~~~~~grW~A~I~~---~gkr~~LGtf~t~EeAArAYD~Aa~~~~G~~a~~NFp~  126 (378)
                      .||||+++++|||+|+|++   +++++|||+|+|+||||+|||.|+++++|.++.+|||+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            4999999899999999996   66899999999999999999999999999999999997

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.3e-18  Score=153.61  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=93.9

Q ss_pred             ccccceeeeccccCCCCCCCc----eeechhhHhhcCCCCCCC--CCCc--eEEEEEeCCCCeEEEEEEEecCC------
Q 017035          201 KARDQLFEKAVTPSDVGKLNR----LVIPKQHAEKHFPLQSGS--TSKG--LLLNFEDVTGKVWRFRYSYWNSS------  266 (378)
Q Consensus       201 ~~~~~lF~K~LT~SDV~~~~r----LvIPk~~ae~~lP~~~~~--~~~g--v~l~v~D~~Gk~W~Fr~s~~~~s------  266 (378)
                      .+...+|.|.||+||++++++    |+|||++++++||.++..  ..+.  +.+.+.|.+|++|+|||+|||+.      
T Consensus        12 ~~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~g~~w~fR~iYyn~~~~ggTR   91 (175)
T d1na6a1          12 CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTR   91 (175)
T ss_dssp             HSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCC
T ss_pred             CCceEEEEEEcccccccccCCccceeeecHHHHHHhCCCCCcccccCCCceEEEEEecCCCCeeEEEEEEECCccCCCcc
Confidence            466899999999999998887    999999999999998854  2233  44567799999999999999874      


Q ss_pred             CceEEecCHHHHHhhcCCCCCCEEEEEEe--cCCCceEEEEEeeecC
Q 017035          267 QSYVLTKGWSRFVKEKNLKAGDIVSFHRS--TGGDRQLYIDWKARTG  311 (378)
Q Consensus       267 ~~yvLt~GW~~FVk~k~Lk~GD~I~F~r~--~~~~~~l~i~~r~~~~  311 (378)
                      ..|+||++|..|+..+.+.+||.++|.+.  .......+|++.+...
T Consensus        92 neyRiT~~g~~~~~~~~~n~G~l~i~af~~~~~~~~~~~~~vwvc~~  138 (175)
T d1na6a1          92 NEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCAS  138 (175)
T ss_dssp             CEEEEECCCTTSGGGCGGGTTCEEEEEEECCTTSCCCCEEEEEECCS
T ss_pred             ccEEEEeccccccccCccccccEEEEEeecCCCCCceeEEEEEEecC
Confidence            88999999999999999999999999884  5567778899888773

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=8e-15  Score=119.55  Aligned_cols=85  Identities=26%  Similarity=0.441  Sum_probs=71.8

Q ss_pred             cccceeeeccccCCCCCCCceeechhhHhhcCCCCCCCCCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhh
Q 017035          202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKE  281 (378)
Q Consensus       202 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~  281 (378)
                      +..+-|.|+|.+++...  +|.||+.++..+.+...      ..+.++|.+|+.|.+++...  +...+|+.||.+||++
T Consensus         4 ~~~~~Ffkv~~~~~~~~--~L~IP~~F~~~~~~~~~------~~i~L~d~~G~~W~v~~~~~--~~~~~~~~GW~~Fv~~   73 (102)
T d1yela1           4 TGEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPFP------ITVDLLDYSGRSWTVRMKKR--GEKVFLTVGWENFVKD   73 (102)
T ss_dssp             CCCEEEEEECCHHHHTT--CEECCHHHHTTCCCCCC------SEEEEEETTSCEEEEEEEEE--TTEEEECTTHHHHHHH
T ss_pred             CCCCeEEEEEcCcccCC--CEECCHHHHHhCCCCCC------CEEEEEcCCCCEEEEEEEEe--CCeEEEccCHHHHHHH
Confidence            34566999999999875  89999999987766543      35788899999999998754  5678899999999999


Q ss_pred             cCCCCCCEEEEEEec
Q 017035          282 KNLKAGDIVSFHRST  296 (378)
Q Consensus       282 k~Lk~GD~I~F~r~~  296 (378)
                      |+|++||.|+|..+.
T Consensus        74 n~L~~GD~~vF~~~~   88 (102)
T d1yela1          74 NNLEDGKYLQFIYDR   88 (102)
T ss_dssp             HTCCTTCEEEEEECS
T ss_pred             cCCCcCCEEEEEEcC
Confidence            999999999998764