Citrus Sinensis ID: 017042

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MAPKKPNPREEPPAASSSAEEEEEEEDDSSGSELEVSSSSSDDDGEEEEKDTQGQDHATTMLPKTQKQPALKKPEATAQTKAPSSESESESESGSEPGASPKPSEATKPTSSKRPNEAENKEAANAKDSKRAKKNGGADEELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGSEESTGGVMALSAAKSYKKNQSQRGNNELLAALKAELLGEEGAVGDKKGNAAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEASRKTTQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccEEccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccHHcccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mapkkpnpreeppaasssaeeeeeeeddssgselevsssssdddgeeeekdtqgqdhattmlpktqkqpalkkpeataqtkapssesesesesgsepgaspkpseatkptsskrpneaenkeaanakdskrakknggadeelhkkepgedtkkqqppplfqrlwseDDEIIVLKRMIEYstekgidpsqdtQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSakkggvrtfsnpheqRAYDLSKKlwegseestggvMALSAAKSykknqsqrGNNELLAALKAELLgeegavgdkkgnaAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEASRKTTQ
Flexible Loop (DISEMBL)
mapkkpnpreeppaasssaeeeeeeeddssgselevsssssdddgeeeekdtqgqdhattmlpktqkqpalkkpeataqtkapssesesesesgsepgaspkpseatkptsskrpneaenkeaanakdskrakknggadeelhkkepgedtkkqqppplfqrlwseddEIIVLKRMIEYStekgidpsqdtQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNnlrksakkggvrtfsnpheqrAYDLSKKLWEGSEESTGGVMALSAAKSYKKNQSQRGNNELLAALKAELLGEEGAVGDKKGNAAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEASRKTTQ
Low Complexity Region (SEG)
MAPKKPNPReeppaasssaeeeeeeeddssgselevsssssdddgeeeeKDTQGQDHATTMLPKTQKQPALKKPEATAQTkapssesesesesgsepgaspkpseATKPTSSKRPneaenkeaanakDSKRAKKNGGADEELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGSEESTGGVMALSAAKSYKKNQSQRGNNellaalkaellgeegaVGDKKGNAAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEASRKTTQ
Disordered region (IsUnstruct)
***************************************************************************************************************************************************************FQRLWSEDDEIIVLKRMIEYSTEKGI*****TQAFYDYVKNSLHGDY********************************************************************************AALKAELLGEEGAVGDKKGNAAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLIL********
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************LWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN*****************HEQRAYDLSKKLWE*******************************************************************************************LQVAQLKLFLQRNELIKEQALLI**A******
Disordered Region (DISEMBL)
********************************************************HATTMLP********************************************************************************************PPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGSEESTGGVMALSAAK********RGNNELLAALKAELLGEEGAVGDKKGNAAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEASRKTTQ
Disordered Region (DISPRO)
*************************************************************************************************************************************************************PLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGS**********************************************KGNAAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEASRK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPKKPNPREEPPAASSSAEEEEEEEDDSSGSELEVSSSSSDDDGEEEEKDTQGQDHATTMLPKTQKQPALKKPEATAQTKAPSSESESESESGSEPGASPKPSEATKPTSSKRPNEAENKEAANAKDSKRAKKNGGADEELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGSEESTGGVMALSAAKSYKKNQSQRGNNELLAALKAELLGEEGAVGDKKGNAAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEASRKTTQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q9SB42	368	Mediator-associated prote	yes	no	0.701	0.720	0.346	7e-26

>sp|Q9SB42|MDA1_ARATH Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210 PE=1 SV=1

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 159/303 (52%), Gaps = 38/303 (12%)

Query: 94  GSEPGASPKPSEATKPTSS--KRPNEAENKEAANAK---DSKRAKKNGGADEELHKKEPG 148
           G++P      S AT P SS  KRP +    EA   +   D++  KK    DE   KK   
Sbjct: 77  GTKPIPETSGSAATVPESSTAKRPLKEAAPEAIKKQKTSDTEHVKKPITNDE--VKKISS 134

Query: 149 EDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTK 208
           ED KK     +FQRL+SE DEI +L+ +I++++ KG DP +D  AF  YVK  +  D TK
Sbjct: 135 EDAKK-----MFQRLFSETDEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLIDFDATK 188

Query: 209 AQLMDKIRRLKKKCVNNLRKSAKKGGVRT---FSNPHEQRAYDLSKKLW---------EG 256
            Q++ K++RLKKK  N ++ S KKG       F+   EQ+ ++LS+K+W         + 
Sbjct: 189 NQIVTKLQRLKKKFNNAVKNSLKKGKTEDDIEFAKDLEQKGFELSRKIWGSNGVLVTGKS 248

Query: 257 SEESTGGV-----MALSAAKSYKKNQSQRGNNELLAALKAELLGEEGAVGDKKGNAAVFF 311
           S +  GG      M L A  + KK Q +    E     +A+++    ++G +    A F 
Sbjct: 249 SRKKVGGTPAPKEMKLVAHSTPKKQQEEAKKPE---RTEAKVVNTGLSIGKE---IASFL 302

Query: 312 DKTLG-VAGLEEFVLHDGFNMIS-GAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLI 369
           +   G   GL+E  L   +  ++ GA+K E+EE+WK L+  Q +L LQR+ L+ E A +I
Sbjct: 303 NADNGSSCGLDESTLTAVWAKVADGAEKREVEEKWKKLKAKQFELCLQRSGLVNETAKMI 362

Query: 370 LEA 372
            +A
Sbjct: 363 FKA 365


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.302    0.122    0.326 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,299,534
Number of Sequences: 539616
Number of extensions: 6508164
Number of successful extensions: 85561
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 3102
Number of HSP's that attempted gapping in prelim test: 49537
Number of HSP's gapped (non-prelim): 21888
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 62 (28.5 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
255555073	391	transcription regulator, putative [Ricin	0.624	0.603	0.470	1e-50
449479419	414	PREDICTED: mediator-associated protein 1	0.809	0.739	0.399	1e-49
224105725	381	predicted protein [Populus trichocarpa]	0.703	0.698	0.406	3e-48
118482785	387	unknown [Populus trichocarpa]	0.899	0.878	0.388	5e-48
224060796	380	predicted protein [Populus trichocarpa]	0.706	0.702	0.409	2e-45
356546712	448	PREDICTED: uncharacterized protein LOC10	0.706	0.595	0.358	1e-31
255549307	383	transcription regulator, putative [Ricin	0.658	0.650	0.344	2e-29
357446199	420	hypothetical protein MTR_2g010790 [Medic	0.719	0.647	0.312	7e-27
15234971	368	DNA-binding storekeeper protein-related	0.701	0.720	0.346	4e-24
297803602	363	hypothetical protein ARALYDRAFT_914061 [	0.677	0.705	0.340	6e-24

>gi|255555073|ref|XP_002518574.1| transcription regulator, putative [Ricinus communis] gi|223542419|gb|EEF43961.1| transcription regulator, putative [Ricinus communis]

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/270 (47%), Positives = 174/270 (64%), Gaps = 34/270 (12%)

Query: 127 KDSKRAKK-----NGGADEELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYST 181
           KDSKRAKK     +G       K    EDTKKQ    LFQRLWSEDDEI+VLK +I++  
Sbjct: 137 KDSKRAKKKDPESDGAVTATAEK---SEDTKKQ----LFQRLWSEDDEIVVLKGIIDFIE 189

Query: 182 EKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNP 241
           +KG+DP++D  +F+DY+K SLH D +  QL DKI RLKKK  NN++   KKG  +TFS  
Sbjct: 190 KKGVDPAKDIISFFDYIKKSLHFDVSLNQLKDKIWRLKKKFENNVK--GKKGEDKTFSKS 247

Query: 242 HEQRAYDLSKKLWEGSEESTGGVMALSAAKSYKKN----QSQRGNNELLAALKAEL---L 294
           H+Q+++DLSKK+W      T G++  S + S K N    ++   N + L ALKAEL   +
Sbjct: 248 HDQKSFDLSKKIW-----GTDGIIGASDS-SIKPNGKAKKATNNNAKSLVALKAELGMDV 301

Query: 295 GEEGAVGDKKG----NAAVF--FDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQ 348
            +E    DK      N +    FD+ +GV+G+E++V+  G +M+ GAKKAE+EE+W+ L 
Sbjct: 302 DKENEKVDKMDVELENHSSLKQFDRGVGVSGMEDYVIKRGLDMVQGAKKAEMEEKWRKLH 361

Query: 349 VAQLKLFLQRNELIKEQALLILEASRKTTQ 378
           VA+L+LFL+RNEL +EQA L+L AS K  Q
Sbjct: 362 VAELELFLRRNELTREQAKLML-ASYKNEQ 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479419|ref|XP_004155594.1| PREDICTED: mediator-associated protein 1-like [Cucumis sativus]

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 206/368 (55%), Gaps = 62/368 (16%)

Query: 60  TMLPKT---QKQPALKKPEATAQTKA--------PSSESESESESGS--EPGASPKPSEA 106
           + LP T   +K+PA KK + +  ++A          S+++S++ESG   +P AS KP + 
Sbjct: 60  SALPSTSVVEKKPAPKKSDPSTNSQAQFSSSESGSGSDTDSDTESGRNVKPIAS-KPMDE 118

Query: 107 T--------KPTSSKRPNEAENKEAA-NAKDSKRAKKNGGAD-------EELHKKEPGED 150
           T        KP++S  P     K+     +D+KR KK+  AD       E+  KK   E 
Sbjct: 119 TPKVKKPRSKPSASVTPARPSLKKPGETTRDAKRPKKSSEADADDGIVAEDDSKKSVDES 178

Query: 151 TKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQ 210
            K      LFQRLWSEDDEI +L  MI+YS +KG DPS D  AF+D++K SLH D TKAQ
Sbjct: 179 KK------LFQRLWSEDDEIAILNGMIDYSAKKGSDPSLDMNAFHDFIKKSLHVDVTKAQ 232

Query: 211 LMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGSEESTGGVMALSAA 270
           LMDKIRRLKKK  NN  +  KKG   TFS  H+Q+ ++LSK++W G      G +   A 
Sbjct: 233 LMDKIRRLKKKYRNNADR-GKKGADPTFSKAHDQKGFELSKRIWGGE-----GFLRTPAV 286

Query: 271 KSYKKN------QSQRGN-NELLAALKAELLGEEGA-------------VGDKKGNAAVF 310
              K N      ++QRG+ ++ LA+LKAELL    A             V     +  V 
Sbjct: 287 DQLKPNANGTPKKNQRGSTSKALASLKAELLPSPDAPKEDDKMKVDDCEVPSGCMDGFVA 346

Query: 311 FDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLIL 370
           F+++LG  GL E  L  G  +I  +K+ ELEE WK L +A+L+LFL+R ELI++Q  LIL
Sbjct: 347 FERSLGAVGLPESFLKPGLELIGQSKRTELEEEWKKLHLAELELFLKRTELIRDQTKLIL 406

Query: 371 EASRKTTQ 378
           +A + +++
Sbjct: 407 DAYKSSSK 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105725|ref|XP_002313912.1| predicted protein [Populus trichocarpa] gi|222850320|gb|EEE87867.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/298 (40%), Positives = 179/298 (60%), Gaps = 32/298 (10%)

Query: 83  PSSESESESESGSEPGASPKPSEATKPTSSKRPNEAENKEAANAKDSKRAKKNGGADEEL 142
           P  E+ +  +S S+P  +  P    K T+ KR N A+     ++KD KRAK      E+ 
Sbjct: 102 PPKEAAAVKKSRSKPAVAATPE---KSTAVKRGNGADR----DSKDLKRAKSKESEPEK- 153

Query: 143 HKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSL 202
                 ED+KKQ    LFQRLW+E+DEI +L+ +I++  EKG DPS+D  AFYD++K SL
Sbjct: 154 -----SEDSKKQ----LFQRLWTEEDEIALLQGIIDFIAEKGYDPSKDMNAFYDFIKRSL 204

Query: 203 HGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGSEESTG 262
           H D +  QL DKI RL+KK  N+++   KKG  + FS PH+Q+ +DLSK +W GSE    
Sbjct: 205 HFDVSMTQLKDKISRLRKKFENHVK--GKKGESKIFSKPHDQKGFDLSKYIW-GSE---- 257

Query: 263 GVMALSAAKSYKKNQSQRGNNELLAALKAELLGEEG--------AVGDKKGNAAVFFDKT 314
           G +  +  K+   N +++GN + L ALKAEL  + G           D      + FD +
Sbjct: 258 GTIKANGKKNNNSNDNRKGNAKKLEALKAELGMDVGEEERMEVEMERDSSVKKVLKFDGS 317

Query: 315 LGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEA 372
           +    ++++V+ +G +   G KKAE+EE+W+ L +A+L+LFL+RNELI+EQA L+L A
Sbjct: 318 VSGGKMDDYVVRNGLDFAHGMKKAEMEEKWRKLHMAELELFLKRNELIREQAKLMLSA 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482785|gb|ABK93310.1| unknown [Populus trichocarpa]

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 158/407 (38%), Positives = 226/407 (55%), Gaps = 67/407 (16%)

Query: 1   MAPKKPNPREEPPAASSSAEEEEEEEDDSSGSELEVSSSSSDDDGEEEEKDTQGQDHATT 60
           MAPK+  P E+PP+ASSS EEEE                +SDD+          Q H + 
Sbjct: 7   MAPKRAPPVEDPPSASSSEEEEETSS---------GEEEASDDE----------QSHPSP 47

Query: 61  MLPKTQ----KQPALKKPEATAQTKAPSSESESESESGSEPGASPKPSEATKPTSSKRPN 116
             P+T+    +  A KKPE T Q      ES+S SES SE  +  +P ++ KP +SK   
Sbjct: 48  PQPQTKTIRTQNSAPKKPEPTTQQSESELESDSGSESESE--SESEPDQSVKPITSKPME 105

Query: 117 EAENKEAANAKDSKR-------------AKKNGGAD---EELHKK-------EPGEDTKK 153
           E   KEAA  K S+               K+  GAD   ++L +        E  ED+KK
Sbjct: 106 ETPPKEAAAVKKSRSKPAVAATPEKSTAVKRGNGADRDSKDLKRAKSKESEPEKSEDSKK 165

Query: 154 QQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMD 213
           Q    LFQRLW+E+DEI +L+ +I++  EKG DPS+D  AFYD++K SLH D +  QL D
Sbjct: 166 Q----LFQRLWTEEDEIALLQGIIDFIAEKGYDPSKDMNAFYDFIKRSLHFDVSMTQLKD 221

Query: 214 KIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGSEESTGGVMALSAAKSY 273
           KI RL+KK  N+++   KKG  + FS PH+Q+ +DLSK +W GSE    G +  +  K+ 
Sbjct: 222 KISRLRKKFENHVK--GKKGESKIFSKPHDQKGFDLSKYIW-GSE----GTIKANGKKNN 274

Query: 274 KKNQSQRGNNELLAALKAELLGEEG--------AVGDKKGNAAVFFDKTLGVAGLEEFVL 325
             N +++GN + L ALKAEL  + G           D      + FD ++    ++++V+
Sbjct: 275 NSNDNRKGNAKKLEALKAELGMDVGEEERMEVEMERDSSVKKVLKFDGSVSGGKMDDYVV 334

Query: 326 HDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEA 372
            +G +   G KKAE+EE+W+ L +A+L+LFL+RNELI+EQA L+L A
Sbjct: 335 RNGLDFAHGMKKAEMEEKWRKLHMAELELFLKRNELIREQAKLMLSA 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060796|ref|XP_002300270.1| predicted protein [Populus trichocarpa] gi|222847528|gb|EEE85075.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 179/310 (57%), Gaps = 43/310 (13%)

Query: 80  TKAPSSESESESESGSEPGASPKPSEATKP---TSSKRPNEAENKEAANAKDSKRAKKNG 136
           T  P  E+  ++ S +      KP+ A  P   T+ KR NE + +      DSKRAK   
Sbjct: 91  TSKPMEETPPKAASAASKKPRSKPATAATPEKTTALKRGNETDRE------DSKRAKN-- 142

Query: 137 GADEELHKKEPG----EDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQ 192
                   KEP     ED+KKQ    LFQRLW+EDDEI +L+ +I+++ +KG DPS+D  
Sbjct: 143 --------KEPDPEKPEDSKKQ----LFQRLWTEDDEIALLRGIIDFTAKKGYDPSKDMN 190

Query: 193 AFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKK 252
           AFYD++K SLH D +  QL DKI RLKKK  N+++   KKG  +TFS PH+Q+ +DLSK 
Sbjct: 191 AFYDFIKKSLHFDVSMTQLKDKISRLKKKFENHVK--GKKGENKTFSKPHDQKGFDLSKS 248

Query: 253 LWEGSEEST--GGVMALSAAKSYKKNQSQRGNNELLAALKAEL---LGEEGAVGDKKGN- 306
           +W GS+ S    G    S   S   N ++ GN +   A K EL   +GEE  V  +    
Sbjct: 249 IW-GSDGSIKDNGRKNDSGNTS---NNNKTGNAKKPEASKPELGMDVGEEDRVEVEMARG 304

Query: 307 ----AAVFFDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELI 362
               + + FD  + V  +E++V+  G N + G +K ++EE W+ L VA+L+LFL+RNELI
Sbjct: 305 SSVKSVLKFDSNVSVERMEDYVVRMGLNFVHGTEKEKMEEEWRKLHVAELELFLKRNELI 364

Query: 363 KEQALLILEA 372
           +EQA L+L A
Sbjct: 365 REQAKLMLTA 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546712|ref|XP_003541767.1| PREDICTED: uncharacterized protein LOC100807745 [Glycine max]

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 171/321 (53%), Gaps = 54/321 (16%)

Query: 97  PGASPKPSEATKPTSSKRPNEAENKEAANAKDSKRAKKNG-------------GADEELH 143
           P A P P+   K T  KRP E  N  A  A DSKRAKK                +D+E+ 
Sbjct: 131 PKAQPSPAPPPKLTL-KRPAENNNNNARVA-DSKRAKKKATESSSAANSAAAAASDDEME 188

Query: 144 K--KEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQ--DTQAFYDYVK 199
           +  K+ G+++KK      FQRLWSE+DE+ ++K ++E++++ G+DP +  +T AF+D+VK
Sbjct: 189 EDGKKSGDNSKK------FQRLWSEEDELAIVKGVVEFTSKTGLDPLKFPNTNAFHDFVK 242

Query: 200 NSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLW--EGS 257
            SLH + +  QL +K+RRLKKK      K  K G    FS PH+Q+ ++LSKK+W  E +
Sbjct: 243 KSLHVEVSCNQLKEKVRRLKKKFETQAGK-GKNGEAPKFSKPHDQKFFELSKKVWGREVT 301

Query: 258 EESTGGVMAL-----SAAKSYKKNQSQRGN------------NELLAALKAELLGEEGAV 300
             + GG +       SA KS KK +S   N             E +  L  E    E   
Sbjct: 302 AGANGGPVEKPKSNGSAVKSPKKKESGSRNVASAKKPKPESKPEPVPVLSLEYKDSEKMQ 361

Query: 301 GDKK---GNAAVFFDKTL------GVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQ 351
            ++K   G+A++F  +         +  L+E  +  G  +I  +K+AEL  +WK L +A+
Sbjct: 362 INQKPDGGDASLFLRELARSKEGASICKLDEDDVKRGLELIGESKRAELRGKWKKLHLAE 421

Query: 352 LKLFLQRNELIKEQALLILEA 372
           ++LF  R+ELI EQ  LILEA
Sbjct: 422 MELFANRSELIGEQTKLILEA 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549307|ref|XP_002515707.1| transcription regulator, putative [Ricinus communis] gi|223545144|gb|EEF46654.1| transcription regulator, putative [Ricinus communis]

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 156/293 (53%), Gaps = 44/293 (15%)

Query: 100 SPKPSEATKPTSSKRPNEAENKEAANAKDSKRAKKNGGADEELHKKEPGEDTKKQQPPPL 159
           SPKP+   K  SSKRP E+++    N K  K+     G DE + +               
Sbjct: 109 SPKPN---KTASSKRPAESDSMGPTNKK--KKPTAGVGEDEVVKRGA------------- 150

Query: 160 FQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLK 219
            QRLWSEDDEI+VL  + +Y +EKG DP  +  AFY+Y+K SLH D ++ QL+DKIRRLK
Sbjct: 151 VQRLWSEDDEIVVLNGLSQYKSEKGADPYSEMGAFYEYIKKSLHVDVSRNQLIDKIRRLK 210

Query: 220 KKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGSEES--------------TGGVM 265
           KK  NN+    K+G    F+  H+++++ LSKKLW  ++++              T G++
Sbjct: 211 KKYGNNM----KRGQDPVFTKSHDEKSFQLSKKLWGKNDQNVNNDNDDNIAGGGVTLGLL 266

Query: 266 A--LSAAKSYK----KNQSQRGNNELLAALKAELLGEEGAVGDKKGNAAVFFDKTLGVAG 319
           A  LS+ K  +    + + Q  + E +    A + GE   V +K  + +   +   G++ 
Sbjct: 267 ANQLSSKKPIRAPNVEEKDQIKSKEKIETKSAVVKGE--GVWEKYPSLSEALESEEGLSD 324

Query: 320 LEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEA 372
             +  L     MI   K  EL+++WK L+ A+L+LF+QR EL+ +Q  L L +
Sbjct: 325 GVKVSLRKHLGMIEKGKLKELDDKWKKLRQAELELFVQRMELVHDQVQLALHS 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446199|ref|XP_003593377.1| hypothetical protein MTR_2g010790 [Medicago truncatula] gi|355482425|gb|AES63628.1| hypothetical protein MTR_2g010790 [Medicago truncatula]

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 156/320 (48%), Gaps = 48/320 (15%)

Query: 88  ESESESGSEPGASPKPSE---ATKPTSSKRPNEAENK------------EAANAKDSKRA 132
           +SE E  SEP   P P     A+KP  ++   +A++             E++   DSKR+
Sbjct: 113 DSEPEHKSEPTPPPNPKVKPLASKPMKTQTQAQAQSTPVPIKSGTKRVAESSTGNDSKRS 172

Query: 133 KK-----NGGADEELHKKE----PGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEK 183
           KK      GG+D+E   +E     GED+KK      FQR++SE+DE+++LK + ++  + 
Sbjct: 173 KKKTTTAGGGSDDENEVEEDAKLTGEDSKKN-----FQRVFSEEDELVILKGLGDFVAKT 227

Query: 184 GIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHE 243
           G DP ++T AF+ +VK  L  D    QL  K+R LKKK  ++            F+ PH+
Sbjct: 228 GKDPMKETAAFHSFVKKLLKADANAEQLKRKVRGLKKKFESS----------DNFTKPHD 277

Query: 244 QRAYDLSKKLWE---GSEESTGGVMALSAAKSYKKNQSQRGNNELLAALKAELLGEEGAV 300
           +RA+DL  K+W      E    G      AKS KK    +        L        G V
Sbjct: 278 KRAFDLF-KVWSKNASKEAEENGKSNEKIAKSAKKEAPVKNGGSAKKELAIVTKNVSGKV 336

Query: 301 GDKKGNAAVF-----FDKTLGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLF 355
               G + +      FD+  G+A L++     G  ++  + + ELEERWK LQ A++ +F
Sbjct: 337 ESGVGKSFILSELVKFDEAAGIAVLDKDAAESGLELMRESDRVELEERWKKLQAAEMDVF 396

Query: 356 LQRNELIKEQALLILEASRK 375
           L R E+++EQ  L ++  +K
Sbjct: 397 LNRAEVVREQTRLAMQELKK 416

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234971|ref|NP_194251.1| DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana] gi|75201680|sp|Q9SB42.1|MDA1_ARATH RecName: Full=Mediator-associated protein 1 gi|13272449|gb|AAK17163.1|AF325095_1 putative protein [Arabidopsis thaliana] gi|4454009|emb|CAA23062.1| putative protein [Arabidopsis thaliana] gi|7269371|emb|CAB79430.1| putative protein [Arabidopsis thaliana] gi|225898811|dbj|BAH30536.1| hypothetical protein [Arabidopsis thaliana] gi|332659625|gb|AEE85025.1| DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 159/303 (52%), Gaps = 38/303 (12%)

Query: 94  GSEPGASPKPSEATKPTSS--KRPNEAENKEAANAK---DSKRAKKNGGADEELHKKEPG 148
           G++P      S AT P SS  KRP +    EA   +   D++  KK    DE   KK   
Sbjct: 77  GTKPIPETSGSAATVPESSTAKRPLKEAAPEAIKKQKTSDTEHVKKPITNDE--VKKISS 134

Query: 149 EDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTK 208
           ED KK     +FQRL+SE DEI +L+ +I++++ KG DP +D  AF  YVK  +  D TK
Sbjct: 135 EDAKK-----MFQRLFSETDEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLIDFDATK 188

Query: 209 AQLMDKIRRLKKKCVNNLRKSAKKGGVRT---FSNPHEQRAYDLSKKLW---------EG 256
            Q++ K++RLKKK  N ++ S KKG       F+   EQ+ ++LS+K+W         + 
Sbjct: 189 NQIVTKLQRLKKKFNNAVKNSLKKGKTEDDIEFAKDLEQKGFELSRKIWGSNGVLVTGKS 248

Query: 257 SEESTGGV-----MALSAAKSYKKNQSQRGNNELLAALKAELLGEEGAVGDKKGNAAVFF 311
           S +  GG      M L A  + KK Q +    E     +A+++    ++G +    A F 
Sbjct: 249 SRKKVGGTPAPKEMKLVAHSTPKKQQEEAKKPE---RTEAKVVNTGLSIGKE---IASFL 302

Query: 312 DKTLG-VAGLEEFVLHDGFNMIS-GAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLI 369
           +   G   GL+E  L   +  ++ GA+K E+EE+WK L+  Q +L LQR+ L+ E A +I
Sbjct: 303 NADNGSSCGLDESTLTAVWAKVADGAEKREVEEKWKKLKAKQFELCLQRSGLVNETAKMI 362

Query: 370 LEA 372
            +A
Sbjct: 363 FKA 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803602|ref|XP_002869685.1| hypothetical protein ARALYDRAFT_914061 [Arabidopsis lyrata subsp. lyrata] gi|297315521|gb|EFH45944.1| hypothetical protein ARALYDRAFT_914061 [Arabidopsis lyrata subsp. lyrata]

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 156/291 (53%), Gaps = 35/291 (12%)

Query: 104 SEATKPTSS--KRPNEAENKEAAN---AKDSKRAKKNGGADEELHKKEPGEDTKKQQPPP 158
           S AT P SS  KRP +    EA       +++  KK    DE   KK  G+D KK     
Sbjct: 83  SAATVPESSTAKRPLKEHASEAIKKHKTSETEHVKKPTTNDE--VKKISGDDAKK----- 135

Query: 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRL 218
           +FQRL+SE DEI +L+ +I++++ KG DP +D  AF  YVK  +  + TK Q++ K++RL
Sbjct: 136 MFQRLFSEADEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLIDFNATKNQIVTKLQRL 194

Query: 219 KKKCVNNLRKSAKKGGVRT---FSNPHEQRAYDLSKKLW--------EGSEESTGGV--- 264
           KKK  N ++KS KKG       F+   EQ+ ++LS+K+W        + S +  GG    
Sbjct: 195 KKKFNNTVKKSLKKGKSEDEIEFAKDIEQKGFELSRKIWGSSGVLASKSSRKKVGGTPAP 254

Query: 265 --MALSAAKSYKKNQSQRGNNELLAALKAELLGEEGAVGDKKGNAAVFFDKTLGVAGLEE 322
             M L A  S KK Q +    E    ++ +++    ++G  +  A+ F  +     GL+E
Sbjct: 255 KEMKLVAHSSPKKQQEEAKKPE---KIETKVVNTSLSIG--REIASFFNAENKSSCGLDE 309

Query: 323 FVLHDGFNMIS-GAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEA 372
             +   +  ++ GA+K E+EE+WK L+  + +L LQR+ L+ E A +I +A
Sbjct: 310 STITAVWAKVADGAEKREVEEKWKKLKGKEFELCLQRSGLVNETAKMIFKA 360

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2200106	352	AT1G11510 [Arabidopsis thalian	0.619	0.664	0.341	1.7e-27
TAIR|locus:2122659	368	AT4G25210 [Arabidopsis thalian	0.677	0.695	0.329	4e-26
TAIR|locus:2195748	376	AT1G61730 [Arabidopsis thalian	0.616	0.619	0.306	4.6e-25
TAIR|locus:2114815	456	AT3G04930 [Arabidopsis thalian	0.309	0.256	0.352	1.1e-23
TAIR|locus:2126091	364	AT4G00390 [Arabidopsis thalian	0.608	0.631	0.290	3.4e-22
TAIR|locus:2143764	427	AT5G28040 [Arabidopsis thalian	0.309	0.274	0.36	1.2e-21
TAIR|locus:2145688	572	AT5G14280 [Arabidopsis thalian	0.354	0.234	0.354	8.9e-21
TAIR|locus:2125068	325	AT4G01260 [Arabidopsis thalian	0.629	0.732	0.300	1.5e-19
TAIR|locus:2038821	252	AT2G01370 [Arabidopsis thalian	0.261	0.392	0.367	8.4e-19
TAIR|locus:2028997	282	AT1G66420 [Arabidopsis thalian	0.359	0.482	0.376	2e-17

TAIR|locus:2200106 AT1G11510 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 85/249 (34%), Positives = 127/249 (51%)

Query:   128 DSKRAKKNGGADEELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDP 187
             D KRAKK  G +E+      GE+TKK      FQRLW+EDDEI+VL+ +I+   + G+  
Sbjct:   110 DVKRAKKVSGEEEKKKSGGGGEETKKTY----FQRLWTEDDEIVVLQGLIDDKKDTGVS- 164

Query:   188 SQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAY 247
               +T   Y+ VK S+  D +K QLM+K+R LKKK  NNL K AK G   TF  PH+++A+
Sbjct:   165 --NTNKVYELVKKSISFDVSKNQLMEKLRALKKKYENNLGK-AKDGVEPTFVKPHDRKAF 221

Query:   248 DLSKKLWEGSEESTGGVMALSAAKSYKKNQSQRGNNXXXXXXXXXXXXXXXXVGDKKGNA 307
             +LSK +W G   +    M  S  KS K ++ +   +                V D+ G  
Sbjct:   222 ELSKLVWGGIRMALASGMK-SNEKSKKSSKFESVKHELDSSLPNSKNNCEDEVMDE-GEV 279

Query:   308 AVFFDKTL--GVAGL--EEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIK 363
             + F   +L   + GL  +E     G + ++        E+WK +Q  + + FLQ++  + 
Sbjct:   280 S-FTKSSLVRSIVGLGMDELTAQQGLSKLASKDMKRFYEQWKAMQAREFEFFLQKHGFLF 338

Query:   364 EQALLILEA 372
             E    I EA
Sbjct:   339 EVLSKISEA 347

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2122659 AT4G25210 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 95/288 (32%), Positives = 143/288 (49%)

Query:   106 ATKPTSS--KRPXXXXXXXXXX---XXDSKRAKKNGGADEELHKKEPGEDTKKQQPPPLF 160
             AT P SS  KRP               D++  KK    DE   KK   ED KK     +F
Sbjct:    89 ATVPESSTAKRPLKEAAPEAIKKQKTSDTEHVKKPITNDEV--KKISSEDAKK-----MF 141

Query:   161 QRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKK 220
             QRL+SE DEI +L+ +I++++ KG DP +D  AF  YVK  +  D TK Q++ K++RLKK
Sbjct:   142 QRLFSETDEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLIDFDATKNQIVTKLQRLKK 200

Query:   221 KCVNNLRKSAKKGGVRT---FSNPHEQRAYDLSKKLW---------EGSEESTGGVMALS 268
             K  N ++ S KKG       F+   EQ+ ++LS+K+W         + S +  GG  A  
Sbjct:   201 KFNNAVKNSLKKGKTEDDIEFAKDLEQKGFELSRKIWGSNGVLVTGKSSRKKVGGTPAPK 260

Query:   269 AAK--SYKKNQSQRGNNXXXXXXXXXXXXXXXXVGDKKGNAAVFFDKTLGVA-GLEEFVL 325
               K  ++   + Q+                   +G +    A F +   G + GL+E  L
Sbjct:   261 EMKLVAHSTPKKQQEEAKKPERTEAKVVNTGLSIGKE---IASFLNADNGSSCGLDESTL 317

Query:   326 HDGFNMIS-GAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLILEA 372
                +  ++ GA+K E+EE+WK L+  Q +L LQR+ L+ E A +I +A
Sbjct:   318 TAVWAKVADGAEKREVEEKWKKLKAKQFELCLQRSGLVNETAKMIFKA 365

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0016592 "mediator complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2195748 AT1G61730 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 79/258 (30%), Positives = 133/258 (51%)

Query:   129 SKRAKKNGGADEELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPS 188
             +KR      A     + +  E++ K+  P  FQRLWSE+DEI+VL+ MI++  + G  P 
Sbjct:   126 TKRPASEAAATTSTKRVKKDEESVKK--PGGFQRLWSEEDEILVLQGMIDFKADTGKSPY 183

Query:   189 QDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKG-GVRTFSNPHEQRAY 247
              DT AFYD++K S+  + +K Q MDKIR L+KK +       K+G    +F   H+++A+
Sbjct:   184 VDTNAFYDFLKKSISFEVSKNQFMDKIRSLRKKYIG------KEGRNEPSFVKAHDKKAF 237

Query:   248 DLSKKLW--EG----SEESTGGVMALSAAKSYKKNQSQRGNNXXXXXXXXXXXXXXXXVG 301
             +LSK +W  +G    S   + GV   S AK  KK  S +                    G
Sbjct:   238 ELSKFIWGPKGIALDSNVKSNGVSKKSVAK--KKIDSVKQELVFAGGSSTNGKKVEEDGG 295

Query:   302 DKKGNAAVFFDKT-----LGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFL 356
             D   +   +FD +     +   G++E+ +   ++++S   K  +EE++K LQ  +L+  L
Sbjct:   296 D---DGCDWFDNSSLVRMIASLGVDEYYVKQQWSLVSVESKKIVEEKYKLLQAKELEFVL 352

Query:   357 QRNELIKEQALLILEASR 374
             ++ + + E A + +EAS+
Sbjct:   353 EKTKFLNEVASMFVEASK 370

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2114815 AT3G04930 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
 Identities = 44/125 (35%), Positives = 76/125 (60%)

Query:   140 EELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYST-EKGIDPSQ-DTQAFYDY 197
             E +H++ P +D+++     LFQRLW+++DEI +L+  ++Y T  +G      DT  FY+ 
Sbjct:   123 EIVHQRPPIDDSRR-----LFQRLWTDEDEIELLRGFLDYMTMHRGSSSHPPDTAPFYEQ 177

Query:   198 VKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGS 257
             +K+ L  D+ K QL++K+RRLKKK   N+      G    F +PH+Q  +++S+K+W  +
Sbjct:   178 IKSKLQLDFNKNQLVEKLRRLKKK-YRNVMSKISSGKEVFFKSPHDQSTFEISRKIWNQT 236

Query:   258 EESTG 262
              +  G
Sbjct:   237 GKIIG 241

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2126091 AT4G00390 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 73/251 (29%), Positives = 124/251 (49%)

Query:   129 SKRAKKNGGADEELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPS 188
             +KRA            K+  E  KK   P LFQRLWS+DDEI +L+ MI+Y  + G  PS
Sbjct:   129 AKRAASEAATTSTKRVKKDEESVKK---PALFQRLWSDDDEISMLQGMIDYHADTGKSPS 185

Query:   189 QDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYD 248
              DT AFY++ K S+  + +K+Q  DK+R L+KK     R    K   R F   H+++A++
Sbjct:   186 ADTNAFYEFQKKSISFEVSKSQFSDKVRSLRKK----YRAKEGKDEPR-FVKAHDKKAFE 240

Query:   249 LSKKLWEGSEESTGGVMALSAAKSYKKNQSQRGNNXXXXXXXXXXXXXXXXVGDKKGNAA 308
             LSK +W G +    G+   S AKS   N   + +                 VG    N  
Sbjct:   241 LSKFIW-GPK----GIALDSNAKS---NGVSKKSASKTKEKLDSVKQDLAFVGVSSTNGD 292

Query:   309 VFFDKT-----LGVAGLEEFVLHDGFNMISGAKKAELEERWKNLQVAQLKLFLQRNELIK 363
              +F+K+     +  +G++E+ +   ++  +   K  +EE+++ +Q  +L+  L ++  + 
Sbjct:   293 DWFEKSSLARMIAGSGIDEYYVRQKWSSFTLETKKIVEEKFQLMQAKELEAMLDKSVRLT 352

Query:   364 EQALLILEASR 374
             +     ++AS+
Sbjct:   353 DLTSYFVDASK 363

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2143764 AT5G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 45/125 (36%), Positives = 78/125 (62%)

Query:   140 EELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQ--DTQAFYDY 197
             E +H++ P +D+++     LFQRLW+++DEI +L+  ++Y T    + S   DT  FY+ 
Sbjct:   110 EIVHQRPPIDDSRR-----LFQRLWTDEDEIELLRGFLDYITNHRGNSSHPPDTAPFYEQ 164

Query:   198 VKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWEGS 257
             +K+ L  ++ K QL++K+RRLKKK  N + K +  G    F +PH+Q  +D+S+K+W  +
Sbjct:   165 IKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSS-GKEVFFKSPHDQATFDISRKIWNQT 223

Query:   258 EESTG 262
              +  G
Sbjct:   224 GKIIG 228

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2145688 AT5G14280 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 8.9e-21, Sum P(2) = 8.9e-21
 Identities = 50/141 (35%), Positives = 77/141 (54%)

Query:   129 SKRAKKNGGADEELHKKEPGE---DTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGI 185
             SKR       +EE  KK+  +   +TK   PP    R+W+E+DE+ +LK ++++  + G+
Sbjct:    29 SKRTASETATEEETKKKKKKKTKHNTKMASPPS--NRIWNEEDELSILKGLVDFRAKTGL 86

Query:   186 DPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQR 245
             +   D  AFY YVK S+H   +K QLM K R+LKKK ++ + K   +G    F+   E  
Sbjct:    87 ESKIDWDAFYCYVKGSIHVKVSKCQLMSKTRKLKKKFLDQMEK-IDQGNDPHFTRSSETE 145

Query:   246 AYDLSKKLWEGSE-ESTGGVM 265
             A+  S  +W   + E T GVM
Sbjct:   146 AFGYSMMIWRKIDAEYTNGVM 166

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2125068 AT4G01260 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 79/263 (30%), Positives = 123/263 (46%)

Query:   107 TKPTSSKRPXXXXXXXXXXXXDSKRAKKNGGADEELHKKEPGEDTKKQQPPPLFQRLWSE 166
             TKP SS                SK+  KN   +E++ KK+  E  KK     LF RL++E
Sbjct:    63 TKPESS---TAAKRSFEKTDEMSKKKSKNSMGEEDVKKKD--ETLKKN----LFVRLFTE 113

Query:   167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNL 226
             +DE I+L+  ++++T+K  +PS     FY+ +KNS+  D TK QL+ KI  LKKK    +
Sbjct:   114 EDEAILLQGFLDFATKKE-NPSDHIDDFYESIKNSISFDVTKPQLVTKIGNLKKKFNGRV 172

Query:   227 RKSAKKGG---VRTFSNPHEQRAYDLSKKLWEGSEESTGGVMALSAAKSYKKNQSQRGNN 283
              K  KKG    V  FS   +Q  +DLS+K+W GS     GV+    +KS    Q Q G +
Sbjct:   173 SKGLKKGKNEEVMVFSKASDQNCFDLSRKIW-GSN----GVLY---SKSKNMRQVQLGGS 224

Query:   284 XXXXXXXXXXXXXXXXVGD-KKGNAAVFFDKTLGV--AGLEEFVLHDGFNMIS-GAKKAE 339
                             +     G   V + K       G+++       + I  G +K +
Sbjct:   225 VKVDEDDQEPQKHRFVISTLSSGQELVSYLKVENPNSLGVDDTKWSAKLDKIKDGKQKRK 284

Query:   340 LEERWKNLQVAQLKLFLQRNELI 362
             +E+  K +Q  + +L + R+E +
Sbjct:   285 MEKNLKKIQAKEEELSMMRSEFV 307

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2038821 AT2G01370 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
 Identities = 39/106 (36%), Positives = 58/106 (54%)

Query:   150 DTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKA 209
             DTKK      FQR+WS+DDEI++L+ M+++  +KG  P  D   F D VKN +     + 
Sbjct:    74 DTKKNY----FQRIWSDDDEIVLLQGMVDFENDKGKSPYDDMTGFIDTVKNFISFQANQH 129

Query:   210 QLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWE 255
             Q   KIRRLK K +        +  +    N H+++ + LSK +WE
Sbjct:   130 QFTTKIRRLKDKFLKKWNNGVDENSL---VNAHDRKCFQLSKVIWE 172

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2028997 AT1G66420 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 58/154 (37%), Positives = 88/154 (57%)

Query:   129 SKRAKKNGGADEELHKKEPGEDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPS 188
             SKRAKK    DE    K+ GE TK     P FQRLWSE+DEI++L+ +I++    G  P 
Sbjct:    64 SKRAKKVSAEDE----KKVGEWTKN----PYFQRLWSEEDEIVMLQGIIKFEDVTGKSPF 115

Query:   189 QDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYD 248
             +D   F ++VKNS+  + +  Q + KI +LK+K     RK  +K G   FS  HEQ+ + 
Sbjct:   116 EDRHGFIEFVKNSISFEASVQQYIGKISQLKRKYT---RK--RKNG---FSEGHEQKCFK 167

Query:   249 LSKKLWEGSEESTGGVMALSAAKSYKKNQSQRGN 282
             L+  +W G++E++      S+ K  KK + + G+
Sbjct:   168 LAMSIW-GTKETSKKTDLCSSPKG-KKVKEEDGD 199

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090774 SubName- Full=Putative uncharacterized protein; (381 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
pfam04504	98	pfam04504, DUF573, Protein of unknown function, DU	8e-36
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	9e-05
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	1e-04
PRK08581	619	PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami	2e-04
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	4e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.002
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.003
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003

>gnl|CDD|218117 pfam04504, DUF573, Protein of unknown function, DUF573

 Score =  125 bits (317), Expect = 8e-36
 Identities = 50/98 (51%), Positives = 70/98 (71%), Gaps = 1/98 (1%)

Query: 158 PLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRR 217
            LFQRLWSE+DEI++L+ MI++  + G  PS DT AFY++VK S+  D +K+QL DKIRR
Sbjct: 1   KLFQRLWSEEDEIVLLQGMIDFKAKTGKSPSDDTDAFYEFVKGSISFDVSKSQLSDKIRR 60

Query: 218 LKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLWE 255
           LKKK     +K  K G   +F+ PH+Q+ ++LSKK+W 
Sbjct: 61  LKKKFRGKRKK-IKTGDDPSFTKPHDQKCFELSKKIWG 97

Length = 98

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 3   PKKPNPREEPPAA--SSSAEEEEEEEDDSSGSELEVSSSSSDDDGEEEEKDTQGQDHATT 60
           P+ P     PP A      EE E E+   S    E        +GE  +K    ++H  +
Sbjct: 511 PEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPS 570

Query: 61  MLPKTQKQPAL-KKPEATAQTKAPSSESESESESGSEPGASPKPSEATK-PTSSKRP 115
            +P   K+P   K P+     + P       S        SPK  E    P S KRP
Sbjct: 571 KIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRP 627

Length = 943

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 29/161 (18%), Positives = 45/161 (27%), Gaps = 13/161 (8%)

Query: 6   PNPREEPPA--ASSSAEEEEEEEDDSSGSELEVSSSSSD----DDGEEEEKDTQGQDHAT 59
           P  RE P A   S    +E  E + +  +   V+S++S       GE  + D   +    
Sbjct: 276 PKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKA 335

Query: 60  TMLPKTQKQPALKKPEATAQTKAPSSESESESESGSEPGASPKPSEATKPTSSKRPNEAE 119
            +   T +  A    E+  Q      ES    E  SE     +        +        
Sbjct: 336 EVAEVTDEVAA----ESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDA 391

Query: 120 NKEAA---NAKDSKRAKKNGGADEELHKKEPGEDTKKQQPP 157
              +A             +    E   K  P  D  K    
Sbjct: 392 EAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDEL 432

Length = 460

>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 4/140 (2%)

Query: 11  EPPAASSSAEEEEEEEDDSSGSELEVSSSSSDD--DGEEEEKDTQGQDHATTMLPKTQKQ 68
           E P  S  +  +  +  DSS      + SS  D  D ++       +   +   P + K 
Sbjct: 137 EQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKP 196

Query: 69  PALKKPEATA--QTKAPSSESESESESGSEPGASPKPSEATKPTSSKRPNEAENKEAANA 126
               +  +       A    S  +++S S+        + ++     + + A   +    
Sbjct: 197 TQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKT 256

Query: 127 KDSKRAKKNGGADEELHKKE 146
           + S          +EL  K 
Sbjct: 257 ETSNTKNPQLPTQDELKHKS 276

Length = 619

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 7   NPREEPPAASSSAEEEEEEEDDSSGSELEVSSSSSDDDGEEEEKDTQGQDHATTMLPKTQ 66
              +EP   + +  +   E   S  ++L +S S S+ + E +     GQ+   T  P T+
Sbjct: 3   TETKEPEDPADNVNDVVSE-ASSPETDLSLSPSQSEQNIEND-----GQNSPETQSPLTE 56

Query: 67  KQPALKKPEATAQTKAPSSESESESESGSEPGASPKPSEATKPTSSKR 114
            QP+   P  T    AP S+S+ +  S  +   +P  +E   P   +R
Sbjct: 57  LQPSPLPPNTTLD--APVSDSQGDESSSEQQPQNPNSTEPAPPPKKRR 102

Length = 808

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 10/148 (6%)

Query: 18  SAEEEEEEEDDSSGSELEVSSSSSDDDGEEEEKDTQGQDHATT---MLPKTQKQPALKKP 74
             EEEEEEE+  S  +         DD EE EK+ Q ++       +  K  K+P  KK 
Sbjct: 44  EIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKK 103

Query: 75  EATAQTKAPSSESESESESGSEPGASPKPSEATKPT-SSKRPNEAENKEAANAKDSKRAK 133
           +      A S ++ +          S  P+    P   S R +  +NKEA + +  +R  
Sbjct: 104 KKDPT-AAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREI 162

Query: 134 KNGGADEELHKKEPGEDTKKQQPPPLFQ 161
           +      +  K++     +K++   L Q
Sbjct: 163 RRKKIQAKARKRK-----EKKKEKELTQ 185

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 22/158 (13%)

Query: 3   PKKPNPREEPPAASSSAEE--------EEEEEDDSSGSELEVSSSSSDDDGEEEEKDTQG 54
             +  P E   AA +SA          E  + DD + +     +  +D+   E       
Sbjct: 295 ALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVAD 354

Query: 55  QDHATTMLPKTQKQPALKKPE--ATAQTKAPSSESESESESGSEPGASPKPSEATKPTSS 112
           +D  +T   +   +  +++ +    A     + + ++E+ S +    +   SEA      
Sbjct: 355 RDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEA------ 408

Query: 113 KRPNEAENKEAANAKDSKRAKKNGGADEELHKKEPGED 150
              ++    E     +      +    +EL    PG+D
Sbjct: 409 ---HDETEPEVP---EKAAPIPDPAKPDELAVAGPGDD 440

Length = 460

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 2   APKKPNPREEPPAASSSAEEEEEEEDDSSGSELEV-SSSSSDDDGEEEEKDTQGQDHATT 60
           A +KP  R  PP+A SS  E       SS S     SSS SD + E    D++  +   T
Sbjct: 373 ATEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRT 432

Query: 61  MLPKTQKQPALK---------------KPEATAQTKAPSSE-SESESESGSEPGASPKPS 104
             P+ +     K                P  +  +  P  +  E E +  S        S
Sbjct: 433 ASPEPEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPES 492

Query: 105 EATKPTSSKRPNEAENKEAANAKDSKRAKKNGGADEE 141
           +   P SS +      + A    +S R K+   A  E
Sbjct: 493 KEPPPKSSSKEK-RRPRTAQKGPESGRGKQKSPAQSE 528

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 27/129 (20%), Positives = 39/129 (30%), Gaps = 17/129 (13%)

Query: 2   APKKPNPREEPPAASSSAEEEE-----------------EEEDDSSGSELEVSSSSSDDD 44
           +P    P   PPAA+S                          DD+  S  + SSS S   
Sbjct: 188 SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGC 247

Query: 45  GEEEEKDTQGQDHATTMLPKTQKQPALKKPEATAQTKAPSSESESESESGSEPGASPKPS 104
           G   E +      A   LP    + +     ++    A SS S  E      P +     
Sbjct: 248 GWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGP 307

Query: 105 EATKPTSSK 113
             + P +S 
Sbjct: 308 APSSPRASS 316

Length = 1352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
PF04504	98	DUF573: Protein of unknown function, DUF573; Inter	100.0
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	96.69
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	92.5
PF07904	91	Eaf7: Chromatin modification-related protein EAF7;	87.98
PF11081	187	DUF2890: Protein of unknown function (DUF2890); In	87.8

>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins

Probab=100.00  E-value=1.7e-36  Score=252.92  Aligned_cols=97  Identities=52%  Similarity=0.921  Sum_probs=94.7

Q ss_pred             cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 017042          159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTF  238 (378)
Q Consensus       159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f  238 (378)
                      +|||+||++|||+||+|||+|+++||..|+.||++||++|+++|+++||++||++||||||+||.+++. ++++|.+|.|
T Consensus         2 ~~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~-k~~~g~~~~~   80 (98)
T PF04504_consen    2 LFQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVK-KSKNGKDPSF   80 (98)
T ss_pred             CCcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhh-hcccCcCCCC
Confidence            699999999999999999999999999999999999999999999999999999999999999999998 7889999999


Q ss_pred             CChhHHHHHHHHHHhcCC
Q 017042          239 SNPHEQRAYDLSKKLWEG  256 (378)
Q Consensus       239 ~~~HD~~~feLSk~IWG~  256 (378)
                      ++|||++||+||++|||.
T Consensus        81 ~~~hd~~~f~Lsk~IWG~   98 (98)
T PF04504_consen   81 SKPHDRRLFELSKKIWGS   98 (98)
T ss_pred             CCHhHHHHHHHHHHHcCC
Confidence            999999999999999995

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=96.69  E-value=0.0028  Score=51.28  Aligned_cols=64  Identities=22%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             CCCchhHHHHHHHHHHHHHhhCCCC------CccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017042          163 LWSEDDEIIVLKRMIEYSTEKGIDP------SQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLR  227 (378)
Q Consensus       163 ~WS~eDEI~ILqgli~~~~~~G~~P------~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~  227 (378)
                      .||++.+-.||..|++.....+. |      ...+......+.......++..||..|++.||++|.....
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~-~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~   70 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNR-PTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKE   70 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCC-CCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999999866544 4      2356777777777778899999999999999999998753

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=92.50  E-value=0.23  Score=39.54  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=38.8

Q ss_pred             CCCCchhHHHHHHHHHH--HHHh--h-CCCCCccHHHHHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHhh
Q 017042          162 RLWSEDDEIIVLKRMIE--YSTE--K-GIDPSQDTQAFYDYVKNSL---HGDYTKAQLMDKIRRLKKKCVNNLR  227 (378)
Q Consensus       162 R~WS~eDEI~ILqgli~--~~~~--~-G~~P~~D~~af~~~ik~sL---~~~~s~~QL~~KvRrLKkKY~~~~~  227 (378)
                      +.|+.+.-..||..+..  +...  . +.....   .+|..|...|   .+..|..|+.+|+..|+++|.....
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~---~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~   72 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNK---KVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD   72 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--H---HHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccch---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            47999988888888877  3321  2 233322   2455444443   4677999999999999999998754

>PF07904 Eaf7: Chromatin modification-related protein EAF7; InterPro: IPR012423 The Saccharomyces cerevisiae (Baker's yeast) member of this family P53911 from SWISSPROT is part of NuA4, the only essential histone acetyltransferase complex in S

Probab=87.98  E-value=0.79  Score=38.13  Aligned_cols=56  Identities=23%  Similarity=0.373  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHh
Q 017042          167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNS-----LHGDYTKAQLMDKIRRLKKKCVNNL  226 (378)
Q Consensus       167 eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~s-----L~~~~s~~QL~~KvRrLKkKY~~~~  226 (378)
                      ++||+||++|+.|+=. |..=+-.|-++.+.|...     +...++..+|-+||++|   |.-..
T Consensus         1 e~Ei~Lf~a~~~~KPv-Gi~KHF~M~~I~~~l~~~~~~~~~~~~~t~~~IW~kL~~~---YdL~~   61 (91)
T PF07904_consen    1 EDEIRLFRAMCRYKPV-GIHKHFHMICIVERLNNPGFDPKLNKHFTIDDIWKKLRTL---YDLEA   61 (91)
T ss_pred             ChHHHHHHHHHhcCCC-ccchHHHHHHHHHHHhccccCCccCCcCCHHHHHHHHHHh---cCHHH
Confidence            5899999999999733 644455788999999999     88999999999999887   66543

cerevisiae involved in global histone acetylation []. ; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0043189 H4/H2A histone acetyltransferase complex

>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses

Probab=87.80  E-value=0.99  Score=42.45  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=12.1

Q ss_pred             cccCCCCchhHHHHHHHHHHHHHh
Q 017042          159 LFQRLWSEDDEIIVLKRMIEYSTE  182 (378)
Q Consensus       159 ~fqR~WS~eDEI~ILqgli~~~~~  182 (378)
                      .-.+.|..= =..||..|.+-...
T Consensus       116 ~~~~swr~l-R~~I~~tLyaifqq  138 (187)
T PF11081_consen  116 QEYRSWREL-RNRIFPTLYAIFQQ  138 (187)
T ss_pred             cCchHHHHH-HHHHHHHHHHHHHH
Confidence            345566532 24677877444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	84.46

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=84.46  E-value=2.7  Score=31.75  Aligned_cols=64  Identities=13%  Similarity=0.202  Sum_probs=42.1

Q ss_pred             cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 017042          159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTF  238 (378)
Q Consensus       159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f  238 (378)
                      .....||.+++..||+++..|    |.    +|..+..+|.+.     |..|+       |.||.+.+.++.+.|..+..
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~----G~----~W~~Ia~~~~~R-----t~~q~-------k~r~~~~l~~~~~~g~~~~~   66 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKF----GR----RWTKISKLIGSR-----TVLQV-------KSYARQYFKNKVKCGLDKET   66 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHT----CS----CHHHHHHHHSSS-----CHHHH-------HHHHHHHHHHHSCSCTTCCC
T ss_pred             cCCCCCCHHHHHHHHHHHHHH----Cc----CHHHHHHHcCCC-----CHHHH-------HHHHHHHHHHHHhcCCCCCc
Confidence            445689999999999988765    63    677766665443     44444       56666666655566776654


Q ss_pred             CChh
Q 017042          239 SNPH  242 (378)
Q Consensus       239 ~~~H  242 (378)
                      ..-|
T Consensus        67 ~si~   70 (72)
T 2cu7_A           67 PNQK   70 (72)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            4444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	83.45

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=83.45  E-value=1.5  Score=30.81  Aligned_cols=61  Identities=16%  Similarity=0.273  Sum_probs=39.8

Q ss_pred             CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 017042          162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVR  236 (378)
Q Consensus       162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p  236 (378)
                      +.||.++...|++++..|-.  | .|     ..+..|...|. .=|..|+......|.....     ++.+|.+|
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~--~-~~-----~~W~~Ia~~l~-gRt~~qc~~r~~~L~~dik-----~iesg~vp   62 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDK--D-TP-----DRWANVARAVE-GRTPEEVKKHYEILVEDIK-----YIESGKVP   62 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCT--T-CT-----THHHHHHHHST-TCCHHHHHHHHHHHHHHHH-----HHHHSSCC
T ss_pred             cCCCHHHHHHHHHHHHHHCC--C-Cc-----hHHHHHHHHcC-CCCHHHHHHHHHHHHHHhh-----ccccCCCC
Confidence            56999999999999987731  1 11     23445555544 2378888877766655443     44678766