Citrus Sinensis ID: 017043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MDPETEFLASKKETGNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRKTQVIDEDSKENHLPVRSFGTVLAREENRRQAMQSSDMQRKKLKPDGNHRAPFSVYKDTNVDITSCHQPDNSKTECNSWLTLGAQAERNKENNAKPAKWTSCKIPQRPGPGVGGATTSDHIEVFIDEECAETDTTRNEIGKSSNLFQVKQGDGQDINRETKLLRKNPLRNFPPNSLPR
ccHHHHHHHccccccHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcHHHccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccc
cccHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHccccHHHHcHHccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccc
MDPETEFLASKKETGNEWELFKENvrplkrgrNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDkyegddplqpWLECIKWVQeafpaggdssgLVVIYEQCVRRFwhsqcykddLRYLNVWLEYAENCIDAQVIFSFldandigkthSVYYIAYALHMESKSKMKAANDLFSlgisrnaqpteKLKDAYKKFLVRSMRktqvidedskenhlpvrsfgtVLAREENRRQAMQSSDmqrkklkpdgnhrapfsvykdtnvditschqpdnsktecnSWLTLGAQAernkennakpakwtsckipqrpgpgvggattsdhIEVFideecaetdttrneigkssnlfqvkqgdgqdinRETKLlrknplrnfppnslpr
mdpeteflaskketgnewelfkenvrplkrgRNIRLLNDalashnsfhlkksLLDNRRRLIEAIDkyegddplQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLgisrnaqptekLKDAYKKFLVRSMRKtqvidedskenhlpvrsfgtvlaREENRRqamqssdmqrkklkpdgnhrapfsvykdtnvditschqpdnskteCNSWLTLGAQAERNkennakpakwtsckipqrpgpgVGGATTSDHIEVFIDEEcaetdttrneigkssnlfqvkqgdgqdinretkllrknplrnfppnslpr
MDPETEFLASKKETGNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRKTQVIDEDSKENHLPVRSFGTVLAREENRRQAMQSSDMQRKKLKPDGNHRAPFSVYKDTNVDITSCHQPDNSKTECNSWLTLGAQAERNKENNAKPAKWTSCKIPQRPGPGVGGATTSDHIEVFIDEECAETDTTRNEIGKSSNLFQVKQGDGQDINRETKLLRKNPLRNFPPNSLPR
*****************WELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHME**********LFSL***************YKKFLV****************************************************************VDI**************SWLT**************************************HIEVFIDEEC*************************************************
**************GNEWELFKENVRPLKRGRN***************************IEAIDKYEGDDPLQPWLECIKWVQEAFPA***SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFL*******************************************************************************************************************************VFI***************************************KNPL*N********
*********SKKETGNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRKTQVIDEDSKENHLPVRSFGTVLAREE*******************GNHRAPFSVYKDTNVDITSCHQPDNSKTECNSWLTLGAQAERNKENNAKPAKWTSCKIPQRPGPGVGGATTSDHIEVFIDEECAETDTTRNEIGKSSNLFQVKQGDGQDINRETKLLRKNPLRNFPPNSLPR
*****EFLASKKETGNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRK********************************************************************************************************************************************************QDINRETKLLRKNPLRNFPP*****
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MDPETEFLASKKETGNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLxxxxxxxxxxxxxxxxxxxxxDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRKTQVIDEDSKENHLPVRSFGTVLAREENRRQAMQSSDMQRKKLKPDGNHRAPFSVYKDTNVDITSCHQPDNSKTECNSWLTLGAQAERNKENNAKPAKWTSCKIPQRPGPGVGGATTSDHIEVFIDEECAETDTTRNEIGKSSNLFQVKQGDGQDINRETKLLRKNPLRNFPPNSLPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q54CV5 1306 Probable inactive serine/ yes no 0.767 0.222 0.266 4e-29
Q9Z1S0 1052 Mitotic checkpoint serine yes no 0.746 0.268 0.284 5e-28
O60566 1050 Mitotic checkpoint serine yes no 0.492 0.177 0.329 5e-27
O59767310 Mitotic spindle checkpoin yes no 0.698 0.851 0.296 6e-27
P47074 515 Spindle assembly checkpoi yes no 0.690 0.506 0.277 5e-20
O08901 1058 Mitotic checkpoint serine no no 0.375 0.134 0.351 1e-19
O43683 1085 Mitotic checkpoint serine no no 0.399 0.139 0.309 3e-17
P41695 1021 Checkpoint serine/threoni no no 0.365 0.135 0.229 3e-06
>sp|Q54CV5|BUB1_DICDI Probable inactive serine/threonine-protein kinase bub1 OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1 Back     alignment and function desciption
 Score =  129 bits (324), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 158/341 (46%), Gaps = 51/341 (14%)

Query: 16  NEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEGDDPLQP 75
           ++WE  KEN+ PLK GR+   L  AL +  +    + L   +++    I++Y+G+DP+  
Sbjct: 5   SDWENTKENIVPLKTGRDPTKL--ALFAKQTNQSDEELEKEKQKFEIIINEYQGEDPIDN 62

Query: 76  WLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQV 135
           WL+ IKWVQ+++P G     L+V+ E+C R F  ++ YK+D RYL +W+ YA+ C D   
Sbjct: 63  WLKYIKWVQQSYPGGNMKEQLIVLLERCTRLFLSTEKYKNDPRYLRIWITYADMCRDPIE 122

Query: 136 IFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFL 195
           +FSFL+   IG   S+ Y A A+  E+K   + A+  F  GI R AQP E+L+  +  F 
Sbjct: 123 VFSFLEVQRIGFYLSLLYEARAIVYENKGNYEQADKSFKQGIERKAQPIERLQQKHLDFE 182

Query: 196 VRSMRKTQ---------------------VIDEDSKENHLPVRSFGTVLARE-ENRRQAM 233
            R + + +                        +++    L   + GT+ +    + R++ 
Sbjct: 183 RRLIARLKHQQQHQQLQQQQQQQNDQLEQQQLDENGNTKLTRSALGTISSSSVHSERKSQ 242

Query: 234 QSSDM--------QRKKLKPDGNHRAPFSVYKDTNVDITSCHQPDNSK------------ 273
           Q+  +        +++K+  D  +   F ++ D     T+     +SK            
Sbjct: 243 QTKGLPLGNSTIDKKRKVGNDQKNNLGFQIFDDEKGGSTTNEVLTDSKFFGSSRKAAALM 302

Query: 274 -------TECNSWLTLGAQAERNKENNAKPAKWTSCKIPQR 307
                  T    W  L  +  ++KEN     KW+  K+ Q+
Sbjct: 303 AAGQTQQTSQMKWDELEPELNKHKENTQLSQKWSDVKLLQK 343

Dictyostelium discoideum (taxid: 44689)
>sp|Q9Z1S0|BUB1B_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Mus musculus GN=Bub1b PE=1 SV=2 Back     alignment and function description
>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Homo sapiens GN=BUB1B PE=1 SV=3 Back     alignment and function description
>sp|O59767|MAD3_SCHPO Mitotic spindle checkpoint component mad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mad3 PE=1 SV=2 Back     alignment and function description
>sp|P47074|MAD3_YEAST Spindle assembly checkpoint component MAD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAD3 PE=1 SV=1 Back     alignment and function description
>sp|O08901|BUB1_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Mus musculus GN=Bub1 PE=2 SV=1 Back     alignment and function description
>sp|O43683|BUB1_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Homo sapiens GN=BUB1 PE=1 SV=1 Back     alignment and function description
>sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUB1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
224086134383 predicted protein [Populus trichocarpa] 0.997 0.984 0.678 1e-154
255539354380 bubr1, putative [Ricinus communis] gi|22 0.992 0.986 0.682 1e-152
224061817382 predicted protein [Populus trichocarpa] 0.997 0.986 0.673 1e-151
359491879381 PREDICTED: probable inactive serine/thre 0.992 0.984 0.671 1e-147
297745617381 unnamed protein product [Vitis vinifera] 0.992 0.984 0.671 1e-146
449455653385 PREDICTED: probable inactive serine/thre 0.989 0.971 0.656 1e-139
449485062385 PREDICTED: LOW QUALITY PROTEIN: probable 0.989 0.971 0.653 1e-138
358249052384 uncharacterized protein LOC100799090 [Gl 0.984 0.968 0.635 1e-134
356574353384 PREDICTED: mitotic checkpoint serine/thr 0.984 0.968 0.630 1e-132
297826813394 hypothetical protein ARALYDRAFT_482302 [ 0.989 0.949 0.614 1e-131
>gi|224086134|ref|XP_002307827.1| predicted protein [Populus trichocarpa] gi|222857276|gb|EEE94823.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 257/379 (67%), Positives = 312/379 (82%), Gaps = 2/379 (0%)

Query: 1   MDPETEFLASKKETGNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRL 60
           +D ETEFLA+K+ETGNEWELFKENVRPLKRGRN+ LLN AL SH  + LKKSLLD RR+L
Sbjct: 6   LDAETEFLATKQETGNEWELFKENVRPLKRGRNVGLLNQALKSHTDYQLKKSLLDTRRKL 65

Query: 61  IEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYL 120
           IEAID+Y+GDDPL PW++CIKWVQEAFP GGD SGL++IYEQCVR FWHS  YKDDLRYL
Sbjct: 66  IEAIDEYKGDDPLFPWIQCIKWVQEAFPPGGDCSGLILIYEQCVRAFWHSDRYKDDLRYL 125

Query: 121 NVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180
            VWLEYAENC DA+VI++FL+AN+IGK+HS YY+AYALHMESKSKMK AND+F+LGISR+
Sbjct: 126 KVWLEYAENCADAEVIYNFLEANEIGKSHSAYYLAYALHMESKSKMKIANDIFNLGISRD 185

Query: 181 AQPTEKLKDAYKKFLVRSMRKTQVIDEDSKENHLPVRSFGTVLAREENRRQAMQSSDMQR 240
           AQP EKLKDAY+KFL+RSMRK  V+++DS E+HLPVRSFGTVL+  +NRRQ M+ S++ R
Sbjct: 186 AQPVEKLKDAYRKFLIRSMRKPNVVEDDSGESHLPVRSFGTVLSTADNRRQNMERSELAR 245

Query: 241 KKLKPDGNHRAPFSVYKD-TNVDITSCHQPDNSKTECNSWLTLGAQAERNKENNAKPAKW 299
           K++KPD   + P S++KD T++D    HQ   SKT+ + W TLGA+ ER+KEN+A P KW
Sbjct: 246 KQMKPDRTQKIPLSIFKDTTSIDTMPGHQSGKSKTDLSPWSTLGAREERDKENSALPTKW 305

Query: 300 TSCKIPQRPGPGVGGATTSDHIEVFIDEECAETDTTRNEIGKSSNLFQVKQGDGQDINRE 359
           T+ KIP+RPG   GG T S  IEVF+DEEC E D + +  GKSS L +++QGDG DI +E
Sbjct: 306 TTYKIPRRPGARTGGVTASASIEVFVDEECTEMDRSHDHDGKSSTL-KLRQGDGLDIKKE 364

Query: 360 TKLLRKNPLRNFPPNSLPR 378
           T LLR+NPLRNFP  SLPR
Sbjct: 365 TDLLRENPLRNFPLRSLPR 383

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255539354|ref|XP_002510742.1| bubr1, putative [Ricinus communis] gi|223551443|gb|EEF52929.1| bubr1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061817|ref|XP_002300613.1| predicted protein [Populus trichocarpa] gi|222842339|gb|EEE79886.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491879|ref|XP_002273598.2| PREDICTED: probable inactive serine/threonine-protein kinase bub1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745617|emb|CBI40782.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455653|ref|XP_004145566.1| PREDICTED: probable inactive serine/threonine-protein kinase bub1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485062|ref|XP_004157060.1| PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase bub1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|358249052|ref|NP_001240240.1| uncharacterized protein LOC100799090 [Glycine max] gi|255642110|gb|ACU21321.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356574353|ref|XP_003555313.1| PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 beta-like [Glycine max] Back     alignment and taxonomy information
>gi|297826813|ref|XP_002881289.1| hypothetical protein ARALYDRAFT_482302 [Arabidopsis lyrata subsp. lyrata] gi|297327128|gb|EFH57548.1| hypothetical protein ARALYDRAFT_482302 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
DICTYBASE|DDB_G0292676 1306 bub1 "BUB family protein kinas 0.468 0.135 0.379 1.9e-32
POMBASE|SPCC1795.01c310 mad3 "mitotic spindle checkpoi 0.597 0.729 0.337 1.1e-31
UNIPROTKB|F1NEE4 1086 BUB1B "Uncharacterized protein 0.867 0.302 0.293 8.6e-31
UNIPROTKB|F1NYN1 1087 BUB1B "Uncharacterized protein 0.867 0.301 0.293 8.6e-31
MGI|MGI:1333889 1052 Bub1b "budding uninhibited by 0.867 0.311 0.268 1.2e-29
UNIPROTKB|F1PLV9 1052 BUB1B "Uncharacterized protein 0.785 0.282 0.295 2.6e-29
UNIPROTKB|F1LMI1 1052 Bub1b "Protein Bub1b" [Rattus 0.854 0.307 0.275 2.6e-29
FB|FBgn0263855 1484 BubR1 "Bub1-related kinase" [D 0.589 0.150 0.300 5.8e-28
UNIPROTKB|O60566 1050 BUB1B "Mitotic checkpoint seri 0.761 0.274 0.286 1e-27
UNIPROTKB|F1MWP1 1062 BUB1B "Uncharacterized protein 0.761 0.271 0.291 1e-27
DICTYBASE|DDB_G0292676 bub1 "BUB family protein kinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 333 (122.3 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
 Identities = 68/179 (37%), Positives = 106/179 (59%)

Query:    16 NEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEGDDPLQP 75
             ++WE  KEN+ PLK GR+   L  AL +  +    + L   +++    I++Y+G+DP+  
Sbjct:     5 SDWENTKENIVPLKTGRDPTKL--ALFAKQTNQSDEELEKEKQKFEIIINEYQGEDPIDN 62

Query:    76 WLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQV 135
             WL+ IKWVQ+++P G     L+V+ E+C R F  ++ YK+D RYL +W+ YA+ C D   
Sbjct:    63 WLKYIKWVQQSYPGGNMKEQLIVLLERCTRLFLSTEKYKNDPRYLRIWITYADMCRDPIE 122

Query:   136 IFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKF 194
             +FSFL+   IG   S+ Y A A+  E+K   + A+  F  GI R AQP E+L+  +  F
Sbjct:   123 VFSFLEVQRIGFYLSLLYEARAIVYENKGNYEQADKSFKQGIERKAQPIERLQQKHLDF 181
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS
GO:0005680 "anaphase-promoting complex" evidence=ISS
POMBASE|SPCC1795.01c mad3 "mitotic spindle checkpoint protein Mad3" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEE4 BUB1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYN1 BUB1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1333889 Bub1b "budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLV9 BUB1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMI1 Bub1b "Protein Bub1b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0263855 BubR1 "Bub1-related kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O60566 BUB1B "Mitotic checkpoint serine/threonine-protein kinase BUB1 beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWP1 BUB1B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.11.1LOW CONFIDENCE prediction!
3rd Layer2.7.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_V0726
hypothetical protein (383 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
pfam08311124 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 5e-48
smart00777124 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 hom 1e-45
>gnl|CDD|191994 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 1 Back     alignment and domain information 
 Score =  158 bits (402), Expect = 5e-48
 Identities = 53/122 (43%), Positives = 78/122 (63%), Gaps = 1/122 (0%)

Query: 57  RRRLIEAIDKY-EGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKD 115
           R+   E I  Y EGDDPL  WL  IKW +EA+P GG  SGL+ + E+CV+ F   + YK+
Sbjct: 3   RQSFEEEIQNYEEGDDPLDLWLRYIKWTEEAYPQGGKQSGLLTLLERCVKYFEDDERYKN 62

Query: 116 DLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSL 175
           D+RYL +WL+Y E   + + IF +L +  IG   +++Y  +A  +ES+ K K A+++F L
Sbjct: 63  DVRYLKIWLKYIEYFSEPRDIFQYLYSKGIGTKLALFYEEWASLLESRGKFKKADEVFQL 122

Query: 176 GI 177
           GI
Sbjct: 123 GI 124

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. Length = 124
>gnl|CDD|214817 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 100.0
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 100.0
KOG1166 974 consensus Mitotic checkpoint serine/threonine prot 100.0
PF15297353 CKAP2_C: Cytoskeleton-associated protein 2 C-termi 96.33
KOG1915677 consensus Cell cycle control protein (crooked neck 96.32
KOG1915 677 consensus Cell cycle control protein (crooked neck 96.17
KOG2047 835 consensus mRNA splicing factor [RNA processing and 94.57
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 93.61
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 93.41
PF02631121 RecX: RecX family; InterPro: IPR003783 RecX is a p 91.9
KOG2396 568 consensus HAT (Half-A-TPR) repeat-containing prote 91.85
KOG1914656 consensus mRNA cleavage and polyadenylation factor 91.1
KOG1258577 consensus mRNA processing protein [RNA processing 89.94
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 89.84
PRK14136309 recX recombination regulator RecX; Provisional 89.4
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 89.18
KOG2047835 consensus mRNA splicing factor [RNA processing and 89.09
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 86.66
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 84.8
KOG0495913 consensus HAT repeat protein [RNA processing and m 83.85
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 82.48
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 82.2
PF0817168 Mad3_BUB1_II: Mad3/BUB1 homology region 2; InterPr 81.12
PF1342844 TPR_14: Tetratricopeptide repeat 80.16
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information 
Probab=100.00  E-value=2.6e-49  Score=341.39  Aligned_cols=122  Identities=40%  Similarity=0.903  Sum_probs=118.8

Q ss_pred             HHHHHHHHHH-hhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCH
Q 017043           55 DNRRRLIEAI-DKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDA  133 (378)
Q Consensus        55 ~~~~~~~~~i-~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~  133 (378)
                      +.|+.|+.+| +.|+|||||++|++||+|++++||+|+.+|+|+.||||||++|+++++||||+|||||||+||++|+||
T Consensus         3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~dp   82 (125)
T smart00777        3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDEP   82 (125)
T ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCCH
Confidence            4678899999 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 017043          134 QVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLG  176 (378)
Q Consensus       134 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~G  176 (378)
                      ++||+||+++|||++||+|||+||.+||.+|+|++|++||++|
T Consensus        83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G  125 (125)
T smart00777       83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG  125 (125)
T ss_pred             HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999998

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein [] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PRK14136 recX recombination regulator RecX; Provisional Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF08171 Mad3_BUB1_II: Mad3/BUB1 homology region 2; InterPro: IPR012572 This domain is required for cell cycle arrest induced by spindle assembly checkpoint (SPC) activation Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
4aez_C223 Crystal Structure Of Mitotic Checkpoint Complex Len 3e-23
3si5_A176 Kinetochore-Bubr1 Kinase Complex Length = 176 1e-18
2wvi_A164 Crystal Structure Of The N-Terminal Domain Of Bubr1 1e-18
4a1g_A152 The Crystal Structure Of The Human Bub1 Tpr Domain 1e-17
2lah_A160 Solution Nmr Structure Of Mitotic Checkpoint Serine 1e-17
3esl_A202 Crystal Structure Of The Conserved N-Terminal Domai 9e-07
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex Length = 223 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 4/179 (2%)
Query: 22  KENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEG-DDPLQPWLECI 80
           KEN+ P K G +   L  + + +++      L   R      I+  E  DDPLQ W++ I
Sbjct: 20  KENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVWIDYI 79
Query: 81  KWVQEAFPAG-GDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQV-IFS 138
           KW  + FP G   +SGLV + E+C R F  +  YKDD+RYL +W++Y  N ID  V +FS
Sbjct: 80  KWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYV-NYIDEPVELFS 138
Query: 139 FLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVR 197
           FL  + IG+  S++Y  YA + ES+   + A++++  G    A+P  + +  Y++F  R
Sbjct: 139 FLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197
>pdb|3SI5|A Chain A, Kinetochore-Bubr1 Kinase Complex Length = 176 Back     alignment and structure
>pdb|2WVI|A Chain A, Crystal Structure Of The N-Terminal Domain Of Bubr1 Length = 164 Back     alignment and structure
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In Complex With The Ki Motif Of Knl1 Length = 152 Back     alignment and structure
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr5460a (Methods Development) Length = 160 Back     alignment and structure
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of The Mitotic Checkpoint Component Bub1 Length = 202 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 1e-66
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 2e-61
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 2e-52
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 2e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 223 Back     alignment and structure
 Score =  209 bits (534), Expect = 1e-66
 Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 2/209 (0%)

Query: 15  GNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEG-DDPL 73
            +  E  KEN+ P K G +   L  + + +++      L   R      I+  E  DDPL
Sbjct: 13  MDVIEQSKENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPL 72

Query: 74  QPWLECIKWVQEAFPAG-GDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCID 132
           Q W++ IKW  + FP G   +SGLV + E+C R F  +  YKDD+RYL +W++Y     +
Sbjct: 73  QVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDE 132

Query: 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYK 192
              +FSFL  + IG+  S++Y  YA + ES+   + A++++  G    A+P  + +  Y+
Sbjct: 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQ 192

Query: 193 KFLVRSMRKTQVIDEDSKENHLPVRSFGT 221
           +F  R +         +  +  P+++   
Sbjct: 193 QFTHRWLEFAPQSFSSNTNSVNPLQTTFE 221
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Length = 164 Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Length = 152 Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 100.0
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 100.0
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 100.0
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 100.0
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 99.3
4ggd_C26 Mitotic checkpoint serine/threonine-protein kinas 98.5
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 97.72
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 97.55
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 96.79
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 96.78
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 96.71
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 96.2
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 96.16
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 95.58
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 87.81
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 80.32
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 80.2
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=8.3e-68  Score=494.26  Aligned_cols=192  Identities=31%  Similarity=0.562  Sum_probs=182.4

Q ss_pred             hccCCchhhhhcCcCccCCCCCCCHHHHHHHhccCCchhhhhhHHHHHHHHHHHHhh-cCCCCCcHHHHHHHHHHHHHcC
Q 017043           10 SKKETGNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDK-YEGDDPLQPWLECIKWVQEAFP   88 (378)
Q Consensus        10 ~~~~~~~~~E~~KENiqPL~~GRs~~~L~~al~~~~~~~~~~~l~~~~~~~~~~i~~-~~gdDPL~~w~~YI~W~~~~yp   88 (378)
                      ....+.++||++|||||||++||||++|+.+|+++.+...+..+.++|+.||++|.+ ++|||||++|++||+|++++||
T Consensus         8 ~~~~~~~~~E~~KENIqPLr~GRs~~~L~~~l~~~~~~~~~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP   87 (223)
T 4aez_C            8 KNWVHMDVIEQSKENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFP   87 (223)
T ss_dssp             -CCEEHHHHHHTGGGCCCCTTCCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCT
T ss_pred             CCCCChHHHhcchhhcCcccCCCCHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCc
Confidence            446778899999999999999999999999999877666778999999999999998 4899999999999999999999


Q ss_pred             CCCC-CCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChH
Q 017043           89 AGGD-SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMK  167 (378)
Q Consensus        89 ~g~~-~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~  167 (378)
                      +|++ +|+|..||||||++|+++++||||+|||||||+||++|++|.+||.||+++|||++||+|||+||.+||.+|+|+
T Consensus        88 ~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~  167 (223)
T 4aez_C           88 QGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQ  167 (223)
T ss_dssp             TCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHH
T ss_pred             CCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHH
Confidence            9975 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhc
Q 017043          168 AANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRK  201 (378)
Q Consensus       168 ~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~~~  201 (378)
                      +|++||++||+++|+|+++|+++|.+|+.||+.+
T Consensus       168 ~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~~~~  201 (223)
T 4aez_C          168 KADEVYQKGKRMKAKPFLRFQQKYQQFTHRWLEF  201 (223)
T ss_dssp             HHHHHHHHHHHHTCBSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999996654
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 98.34
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 97.05
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 80.22
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=1.4e-06  Score=79.75  Aligned_cols=117  Identities=22%  Similarity=0.342  Sum_probs=86.2

Q ss_pred             cHHHHHHHHHHHHHcCCCCCC-----CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc-----------------
Q 017043           73 LQPWLECIKWVQEAFPAGGDS-----SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC-----------------  130 (378)
Q Consensus        73 L~~w~~YI~W~~~~yp~g~~~-----s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~-----------------  130 (378)
                      |++|.+||.|- ...|.-...     +....++|||+..+..         +-.||+.|+.++                 
T Consensus         8 ~~~W~~yi~~E-~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~---------~~~lW~~y~~~~~~~~~~~~~~~~~~~~~   77 (308)
T d2onda1           8 VDMWKKYIQWE-KSNPLRTEDQTLITKRVMFAYEQCLLVLGH---------HPDIWYEAAQYLEQSSKLLAEKGDMNNAK   77 (308)
T ss_dssp             HHHHHHHHHHH-HTCTTCCCCHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHHH-HhCcccccccchhHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCchHHHHHHHhhcc
Confidence            68999999994 444543221     2355689999988654         446999999864                 


Q ss_pred             ---CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh
Q 017043          131 ---IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMR  200 (378)
Q Consensus       131 ---~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~~  200 (378)
                         +.+.++|.--.... ......+|..||.+++..|++.+|..||+..|...-.....+-..|..|..|...
T Consensus        78 ~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~  149 (308)
T d2onda1          78 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG  149 (308)
T ss_dssp             HHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Confidence               23456666544322 3445678999999999999999999999999987776667777888888876543
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure