Citrus Sinensis ID: 017058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMKPM
Secondary Structure (PSIPRED)
cHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccEEEEccEEEEEEcccccEEEEEcccccccccccccEEEccEEEcccccEEEcccccEEEccccccccccccEEEEEEEccEEEEEcccccccccccccccccccEEEEEEEEEEEcccHHHEHHHccccccccccccccccccccccccEEEEccccccEEEccccccEEEEcccEEEEEEEEEcccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHccEEEcccHHHcccccccccEHccccEEEEEcccccEEEEEcccccccccccccEEcccEEEEccccEEEcccccEEEcccccccccEEEEEcEEEEccEEEEEcccccccccccccccccccccccccEEEccccHHHHHHHccccccccEEcccccccccccccccccccccccccccccccccccEEccccEEEEEEccccccccccccccccccEEEEEEEEEEcccccEEEEEEccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mealvndrllqdrhtsgtdqtcaspstskqsldivkgklprkslnvsgpvqpyntrlknfwfpvafstdlkddtmvpfdcfeepwvifrgkdgipgcvqntcahracplhlgsvnegriqcpyhgweystdgkcekmpstqlrnvkikslpcfeqegmiwiwpgdepptatipcllppsgfeIHAEIVMELPIEHGLLLDNLLdlahapfthtstfakgwsvpslvkfltpasglqgywdpypidmefrppcmvlstigiskpgklegqntrqCATHLHqlhvclpssrkkTRLLYRMSLDFasvlkhvpFMQYLWRHFAEQVLNEDLRLVLGQqermnnganvwnlpvgydklgvRYRLWRDALEKGakqlpfmkpm
Flexible Loop (DISEMBL)
mealvndrllqdrhtsgtdqtcaspstskqsldivkgklprkslnvsgpvqpyntrlknFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTstfakgwsvPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHlhqlhvclpssrKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQErmnnganvwnlpvgYDKLGVRYRLWRDALekgakqlpfmkpm
Low Complexity Region (SEG)
MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGllldnlldlAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMKPM
Disordered region (IsUnstruct)
************************************************PVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALE************
Disordered Region (DISOPRED)
****VND***********************************************TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALE********MKP*
Disordered Region (DISEMBL)
MEALVNDRLLQDR******************LDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMKPM
Disordered Region (DISPRO)
****************************************************YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMKPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q8S7E1	541	Chlorophyllide a oxygenas	yes	no	0.986	0.689	0.827	0.0
Q9MBA1	536	Chlorophyllide a oxygenas	yes	no	0.989	0.697	0.783	1e-174
Q9ZWM5	645	Chlorophyllide a oxygenas	N/A	no	0.814	0.477	0.596	1e-114
Q9XJ38	463	Chlorophyllide a oxygenas	N/A	no	0.928	0.758	0.514	1e-102
Q9SK50	539	Protein TIC 55, chloropla	no	no	0.780	0.547	0.260	1e-23
O49931	553	Protein TIC 55, chloropla	N/A	no	0.783	0.535	0.253	6e-23
P12609	329	Vanillate O-demethylase o	N/A	no	0.470	0.541	0.271	6e-18
O05616	354	Vanillate O-demethylase o	N/A	no	0.542	0.579	0.288	7e-18
P94679	347	Toluene-4-sulfonate monoo	no	no	0.420	0.458	0.279	8e-15
Q44256	432	3-chlorobenzoate-3,4-diox	no	no	0.433	0.379	0.288	2e-14

>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/376 (82%), Positives = 338/376 (89%), Gaps = 3/376 (0%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCAS--PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLK 58
           ME LVNDRLLQD  +S +   C S  PSTS  S  +V  K PR+SLNVSGPVQPYN  LK
Sbjct: 159 METLVNDRLLQDGGSSASTAECTSLAPSTSSAS-RVVNKKPPRRSLNVSGPVQPYNPSLK 217

Query: 59  NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR 118
           NFW+PVAFS+DLKDDTMVP DCFEE WVIFRGKDG PGCV NTCAHRACPLHLGSVNEGR
Sbjct: 218 NFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGR 277

Query: 119 IQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPP 178
           IQCPYHGWEYSTDGKCEKMPST++ NV+I+SLPCFEQEGM+WIWPG++PP +TIP LLPP
Sbjct: 278 IQCPYHGWEYSTDGKCEKMPSTKMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPP 337

Query: 179 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGY 238
           SGF IHAEIVMELP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP+SGLQGY
Sbjct: 338 SGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGY 397

Query: 239 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRM 298
           WDPYPIDMEFRPPCMVLSTIGISKPGKLEG++T+QC+THLHQLH+CLPSSR KTRLLYRM
Sbjct: 398 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRM 457

Query: 299 SLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRY 358
           SLDFA  +KHVPFM  LW HFAE+VLNEDLRLVLGQQERM NGANVWN PV YDKLG+RY
Sbjct: 458 SLDFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRY 517

Query: 359 RLWRDALEKGAKQLPF 374
           RLWRDA+E+G  +LPF
Sbjct: 518 RLWRDAIERGVDRLPF 533

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 2EC: 2

>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1

 Score =  611 bits (1575), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 293/374 (78%), Positives = 329/374 (87%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LVNDRLL  R  +  D+  +S + S   LD  K     KSLNVSGPV PY+  LKNF
Sbjct: 161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNF 220

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAF+ DLK DTMVP +CFE+PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQ
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEYSTDG+C+KMPST+L  VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSG
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSG 340

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           F IHAE+VM+LP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWD
Sbjct: 341 FLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD 400

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEF+PPC+VLSTIGISKPGKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSL
Sbjct: 401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSL 460

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA +LK++PFM++LWRHFAEQVLNEDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRL
Sbjct: 461 DFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRL 520

Query: 361 WRDALEKGAKQLPF 374
           WR+A+++G  +LPF
Sbjct: 521 WRNAVDRGDDKLPF 534

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/312 (59%), Positives = 231/312 (74%), Gaps = 4/312 (1%)

Query: 57  LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
           L+NFW+P  FS  L  DT+VPF+ F EPWV+FR + G P C+++ CAHR CPL LG V E
Sbjct: 301 LRNFWYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQPSCIRDECAHRGCPLSLGKVVE 360

Query: 117 GRIQCPYHGWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 175
           G++ CPYHGWE++ DG C KMPST   RNV + +LPC E++G IW+WPGD  P  T+P  
Sbjct: 361 GQVMCPYHGWEFNGDGACTKMPSTPFCRNVGVAALPCAEKDGFIWVWPGDGLPAETLPDF 420

Query: 176 L-PPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASG 234
             PP GF IHAEI++++P+EHGLL++NLLDLAHAPFTHTSTFA+GW VP  VKF      
Sbjct: 421 AQPPEGFLIHAEIMVDVPVEHGLLIENLLDLAHAPFTHTSTFARGWPVPDFVKFHA-NKA 479

Query: 235 LQGYWDPYPIDMEFRPPCMVLSTIGISKPGK-LEGQNTRQCATHLHQLHVCLPSSRKKTR 293
           L G+WDPYPIDM F+PPCM LSTIG+++PGK + G    QC  HLHQLHVC+PS +  TR
Sbjct: 480 LSGFWDPYPIDMAFQPPCMTLSTIGLAQPGKIMRGVTASQCKNHLHQLHVCMPSKKGHTR 539

Query: 294 LLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDK 353
           LLYRMSLDF   ++HVPF+  +W+  A QVL EDL LVLGQQ+RM  G + W+ P  YDK
Sbjct: 540 LLYRMSLDFLPWMRHVPFIDRIWKQVAAQVLGEDLVLVLGQQDRMLRGGSNWSNPAPYDK 599

Query: 354 LGVRYRLWRDAL 365
           L VRYR WR+ +
Sbjct: 600 LAVRYRRWRNGV 611

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/356 (51%), Positives = 237/356 (66%), Gaps = 5/356 (1%)

Query: 16  SGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM 75
           SG   T       + S  + +G  P+ S  +   ++     L+NFW+P  F+  L+   M
Sbjct: 90  SGMASTSYPSHVPQPSQAVRRGPKPKDSRRLRSSLE-LEDGLRNFWYPTEFAKKLEPGMM 148

Query: 76  VPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCE 135
           VPFD F  PWV+FR +   P C++++CAHRACPL LG V  G +QCPYHGWE+   G C 
Sbjct: 149 VPFDLFGVPWVLFRDEHSAPTCIKDSCAHRACPLSLGKVINGHVQCPYHGWEFDGSGACT 208

Query: 136 KMPSTQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL-LPPSGFEIHAEIVMELPI 193
           KMPST++   V + +LPC E++G +W+WPGD PP    P    PP+G+++HAEI++++P+
Sbjct: 209 KMPSTRMCHGVGVAALPCVEKDGFVWVWPGDGPPPDLPPDFTAPPAGYDVHAEIMVDVPV 268

Query: 194 EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCM 253
           EHGLL++NLLDLAHAPFTHT+TFA+GW +P  V+F      L G WDPYPI M F PPC+
Sbjct: 269 EHGLLMENLLDLAHAPFTHTTTFARGWPIPEAVRFHA-TKMLAGDWDPYPISMSFNPPCI 327

Query: 254 VLSTIGISKPGK-LEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFM 312
            LSTIG+S+PGK + G    +C  HLHQLHVC+PS    TRLLYRMSLDF    KHVPF+
Sbjct: 328 ALSTIGLSQPGKIMRGYKAEECKRHLHQLHVCMPSKEGHTRLLYRMSLDFWGWAKHVPFV 387

Query: 313 QYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKG 368
             LW+  A QVL EDL LVLGQQ RM  G + W  P+ YDKL VRYR WR+ +  G
Sbjct: 388 DVLWKKIAGQVLGEDLVLVLGQQARMIGGDDTWCTPMPYDKLAVRYRRWRNMVADG 443

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Dunaliella salina (taxid: 3046)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 150/334 (44%), Gaps = 39/334 (11%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+P+  + ++ +D  +    ++   V+++  +G   C ++ C HR   L  G + +GR++
Sbjct: 88  WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147

Query: 121 CPYHGWEYSTDGKCEKMP----STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 175
           C YHGW++  +GKC K+P    S ++ +   +K+    + +G++W+W   + P    P  
Sbjct: 148 CLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPN--PEK 205

Query: 176 LP-------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLV 226
           LP       P  F+I      ELP +H +LL+NL+D AH P +H  T   AK      LV
Sbjct: 206 LPWFENFARPGFFDI--STTHELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAQPLV 263

Query: 227 KFLTPAS--GLQGYWDPYPID------MEFRPPCMVLSTIGISKPGKLEGQNTRQCATHL 278
             +T  S  G  G W            + F  PC++ +        + EG++      + 
Sbjct: 264 FEVTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNN------REFEGKDG--VKNYF 315

Query: 279 HQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQE-R 337
             L +C P+ + K+ L+ R  +   S L  V   Q+ W   A +V  +D+  +  Q E  
Sbjct: 316 SGLFLCRPTGQGKSMLIVRFGVTKRSPLVSV-LPQWFWHQNACKVFEQDMGFLSSQNEVL 374

Query: 338 MNNGANVWNLPVGY---DKLGVRYRLWRDALEKG 368
           M       +L +     D     YR W D +  G
Sbjct: 375 MKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHG 408

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Arabidopsis thaliana (taxid: 3702)

>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1

 Score =  108 bits (270), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 36/332 (10%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+P+  + ++  D  +    +++  V+FR  +    C ++ C HR   L  G + +GR++
Sbjct: 103 WYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGNDQFQCYEDRCPHRLAKLSEGQLIDGRLE 162

Query: 121 CPYHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP--TATIP 173
           C YHGW++  +GKC K+P         ++  +K+    + +G++W+W   + P   + IP
Sbjct: 163 CLYHGWQFEGEGKCVKIPQLPADAKIPKSACVKTYEVRDSQGVLWVWMSRKTPPNVSKIP 222

Query: 174 CL--LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLVKFL 229
                   GF+       ELP +H +LL+NL+D AH P +H  T   AK     +L   +
Sbjct: 223 WFENFARPGFQ-DISTTHELPYDHSILLENLMDPAHVPISHDRTDWSAKREDAQALGFEV 281

Query: 230 TPAS--GLQGYW-----DPYPIDMEFRPPCMVLSTIGI-SKPGKLEGQNTRQCATHLHQL 281
           T  +  G  G+W        P  + F  PC++ +   I  K G++          H   L
Sbjct: 282 TERTDRGFAGWWGREKDGSKPNFLRFEAPCVLQNNREIVDKNGEI---------NHFSGL 332

Query: 282 HVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQ-----QE 336
            +C P+ + K+ L+ R      S L  + F ++ +   A +V  +D+  +  Q     +E
Sbjct: 333 FLCRPTGQGKSMLIVRFGATKRSPLIKL-FPEWYFHQNASKVFEQDMGFLSSQNEILLKE 391

Query: 337 RMNNGANVWNLPVGYDKLGVRYRLWRDALEKG 368
           ++       NL    D     YR W D +  G
Sbjct: 392 KVPTKELYLNLKSS-DTWVAEYRKWMDKVGHG 422

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Pisum sativum (taxid: 3888)

>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain ATCC 19151) GN=vanA PE=3 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 39/217 (17%)

Query: 83  EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 142
           E  VI+RG       +++ C HR  PL LGS+ +G++ C YHG     DG+   MP+ ++
Sbjct: 5   ERMVIYRGAGQRVAALEDFCPHRGAPLSLGSIQDGKLVCGYHGLVMDCDGRTASMPAQRV 64

Query: 143 RNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFE-----IHAEIVMELPIEHG 196
           +    I++ P  E+ G IW+WPGD       P L+P   +       +   +  +  ++ 
Sbjct: 65  QAFPCIRAFPAQERHGFIWVWPGD--AALADPALIPHLEWAENPAWAYGGGLYHIACDYR 122

Query: 197 LLLDNLLDLAHAPFTHTST------------------------FAKGWSVPSLVKFLTPA 232
           L++DNL+DL H  + H S+                        F +G   P   +     
Sbjct: 123 LMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVEGDRLITGRFMEGILAPPFWRAALRG 182

Query: 233 SGLQGYWDPYPIDM----EFRPPCMVLSTIGISKPGK 265
           +GL    D  P+D      F PP  VL  +G++  G+
Sbjct: 183 NGLA---DDVPVDRWQICRFTPPSHVLIEVGVAHAGR 216

Pseudomonas sp. (strain ATCC 19151) (taxid: 315)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

EC: 2

>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain HR199 / DSM 7063) GN=vanA PE=3 SV=1

 Score = 92.0 bits (227), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 34/239 (14%)

Query: 58  KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 117
           KN W+ VA + D   D  +      E  V +RG +G    V++ C HR  PL LG V +G
Sbjct: 4   KNAWY-VACTPDEIADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDG 62

Query: 118 RIQCPYHGWEYSTDGKCEKMPSTQLRNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLL 176
           ++ C YHG E   +GK   MP  +++    IKS    E+ G IW+WPGD       P L+
Sbjct: 63  KLICGYHGLEMGCEGKTLAMPGQRVQGFPCIKSYAVEERYGFIWVWPGDR--ELADPALI 120

Query: 177 PPSGFEIHAEI-----VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK---- 227
               +  + E      +  +  ++ L++DNL+DL H  + H S+  +     + V     
Sbjct: 121 HHLEWADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVE 180

Query: 228 -----------------FLTPASGLQGYWDPYPIDM----EFRPPCMVLSTIGISKPGK 265
                            F   A    G  D  P+D      F PP  VL  +G++  GK
Sbjct: 181 GDTVITSRYMDNVMAPPFWRAALRGNGLADDVPVDRWQICRFAPPSHVLIEVGVAHAGK 239

Pseudomonas sp. (strain HR199 / DSM 7063) (taxid: 86003)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

EC: 2

>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 57  LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
           ++N W+  A+ T++  + +       EP +++R   G    ++N C HR+ PLH+G    
Sbjct: 3   IRNCWYVAAWDTEIPAEGLFHRTLLNEPVLLYRDTQGRVVALENRCCHRSAPLHIGRQEG 62

Query: 117 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVK--IKSLPCFEQEGMIWIWPGDEPPTATIPC 174
             ++C YHG +++  G C ++P  +    K  IKS P  E+  ++WIW GD  P    P 
Sbjct: 63  DCVRCLYHGLKFNPSGACVEIPGQEQIPPKTCIKSYPVVERNRLVWIWMGD--PARANPD 120

Query: 175 LLPPSGFEIHAEIVME-----LPIEHGLLLDNLLDLAHAPFTHTSTFA 217
            +    +    E  M+         + L++DNLLD  H  + H +T  
Sbjct: 121 DIVDYFWHDSPEWRMKPGYIHYQANYKLIVDNLLDFTHLAWVHPTTLG 168

Involved in the toluene-4-sulfonate degradation pathway. Does not discriminate between the sulfonate and the carboxyl substituents and can also be involved in the p-toluenecarboxylate degradation pathway. Can use toluene-4-sulfonate, p-toluate, m-toluate and 4-ethylbenzoate as substrates, but not p-xylene, toluene and p-cresol. Catalyzes also the demethylation of 4-methoxybenzoate to 4-hydroxybenzoate.

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 4

EC: .

EC: -

>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas testosteroni GN=cbaA PE=3 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 48  GPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 106
           G   P    ++ +W P   ST+L+   + V      E  V FR   G  G + + C HR 
Sbjct: 14  GRGTPMGGLMREYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRG 73

Query: 107 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST----QLRN-VKIKSLPCFEQEGMIWI 161
             L +G V EG ++C YHGW++S +GKC  MPS     + +N V++   P  E  G++W+
Sbjct: 74  VSLFMGRVEEGGLRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVRVARYPVKEMAGVVWV 133

Query: 162 WPGDEPPTATIPCL----LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTS 214
           + G       +P L    LP +  ++   I ++        L+  +D +H  F H  
Sbjct: 134 YMGTRKVLPELPRLEVLNLPENEVDV---ICLQRKSNWLQNLEGEIDTSHFNFLHVG 187

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
255545394	535	chlorophyll synthase, putative [Ricinus	0.997	0.704	0.859	0.0
356552681	534	PREDICTED: chlorophyllide a oxygenase, c	0.989	0.700	0.860	0.0
224066823	472	predicted protein [Populus trichocarpa]	0.994	0.796	0.864	0.0
359492578	537	PREDICTED: chlorophyllide a oxygenase, c	0.994	0.700	0.854	0.0
356549331	532	PREDICTED: chlorophyllide a oxygenase, c	0.989	0.703	0.855	0.0
356509409	530	PREDICTED: chlorophyllide a oxygenase, c	0.994	0.709	0.853	0.0
356515896	530	PREDICTED: chlorophyllide a oxygenase, c	0.994	0.709	0.853	0.0
224082298	531	predicted protein [Populus trichocarpa]	0.989	0.704	0.863	0.0
449465447	534	PREDICTED: chlorophyllide a oxygenase, c	0.989	0.700	0.815	0.0
110289597	526	chlorophyll a oxygenase, putative, expre	0.986	0.709	0.827	0.0

>gi|255545394|ref|XP_002513757.1| chlorophyll synthase, putative [Ricinus communis] gi|223546843|gb|EEF48340.1| chlorophyll synthase, putative [Ricinus communis]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/377 (85%), Positives = 350/377 (92%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           MEALVNDRLL DR T+ T  T  S ST+ QSLD V+ + PRKSLNVSGPVQPY++ LKNF
Sbjct: 158 MEALVNDRLLPDRSTTETSHTSPSTSTAPQSLDTVQRRSPRKSLNVSGPVQPYHSHLKNF 217

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAFSTDLKDDTM+P DCFEEPWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQ
Sbjct: 218 WYPVAFSTDLKDDTMIPIDCFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQ 277

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEY+TDGKCEKMPST+L NVKIKSLPCFEQEGMIW+WPG +PP AT+P L PP+G
Sbjct: 278 CPYHGWEYTTDGKCEKMPSTRLLNVKIKSLPCFEQEGMIWVWPGSDPPAATLPSLQPPAG 337

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           F +HAEIVMELP+EHGLLLDNLLDLAHAPFTHTSTFAKGW+VPSLV FLTPASGLQGYWD
Sbjct: 338 FHVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWTVPSLVTFLTPASGLQGYWD 397

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEFRPPCMVLSTIGISKPGKLEG++TRQCATHLHQLHVCLPSSR+KTRLLYRMSL
Sbjct: 398 PYPIDMEFRPPCMVLSTIGISKPGKLEGKSTRQCATHLHQLHVCLPSSRQKTRLLYRMSL 457

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA +LKH+PFM+YLWRHFAEQVLNEDLRLV+GQQERM NGANVWNLPV YDKLGVRYRL
Sbjct: 458 DFAPLLKHIPFMEYLWRHFAEQVLNEDLRLVVGQQERMINGANVWNLPVTYDKLGVRYRL 517

Query: 361 WRDALEKGAKQLPFMKP 377
           WRDA+E+GAKQ PF KP
Sbjct: 518 WRDAVERGAKQNPFSKP 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552681|ref|XP_003544691.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/374 (86%), Positives = 347/374 (92%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LVNDRLLQDR T+   QT +SPSTS  SL I K + PRKSLNVSGPVQ Y+  LKNF
Sbjct: 153 MEELVNDRLLQDRSTAEVAQTSSSPSTSANSLVIEKRRQPRKSLNVSGPVQSYHPHLKNF 212

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAFS DLKDDTM+P +CFEEPWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQ
Sbjct: 213 WYPVAFSNDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQ 272

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEY+TDGKCEKMPSTQ  NVKIKS+PCFE+EGMIWIWPG++PPTAT+P LLPPSG
Sbjct: 273 CPYHGWEYTTDGKCEKMPSTQQLNVKIKSVPCFEREGMIWIWPGNDPPTATLPSLLPPSG 332

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLV FLTPASGLQGYWD
Sbjct: 333 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVNFLTPASGLQGYWD 392

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEFRPPCMVLSTIGISKPG+LEGQ+TR+C+THLHQLHVCLPSS++KTRLLYRMSL
Sbjct: 393 PYPIDMEFRPPCMVLSTIGISKPGRLEGQSTRECSTHLHQLHVCLPSSKQKTRLLYRMSL 452

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA +LKH+P M+YLWRHFAEQVLNEDLRLV+GQQERMNNGANVWN PV YDKLGVRYR+
Sbjct: 453 DFAPLLKHIPLMKYLWRHFAEQVLNEDLRLVVGQQERMNNGANVWNFPVAYDKLGVRYRM 512

Query: 361 WRDALEKGAKQLPF 374
           WRDALE+G KQLPF
Sbjct: 513 WRDALERGVKQLPF 526

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066823|ref|XP_002302233.1| predicted protein [Populus trichocarpa] gi|222843959|gb|EEE81506.1| predicted protein [Populus trichocarpa]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/376 (86%), Positives = 349/376 (92%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LVNDRLLQDR+ +  DQ   SPSTS QSLD VK K PRK+LNVSGPVQPY+ RLKNF
Sbjct: 95  MEELVNDRLLQDRNQAEPDQESPSPSTSTQSLDTVKRKSPRKNLNVSGPVQPYHPRLKNF 154

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAFSTDLKDDTM+P DCFEEPWV+FRGKDG PGCV+NTCAHRACPLHLGSVNEGRIQ
Sbjct: 155 WYPVAFSTDLKDDTMIPIDCFEEPWVLFRGKDGKPGCVRNTCAHRACPLHLGSVNEGRIQ 214

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEYSTDGKCEKMPST+L +VK+KSLPCFEQEGMIWIWPG +PP A++P L PP G
Sbjct: 215 CPYHGWEYSTDGKCEKMPSTRLLDVKVKSLPCFEQEGMIWIWPGSDPPAASLPSLQPPPG 274

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           F++HAEIVMELP+EHGLLLDNLLDLAHAPFTHTSTFAKGW+VPSLVKFLTPASGLQGYWD
Sbjct: 275 FQVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWTVPSLVKFLTPASGLQGYWD 334

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEFRPPCMVLSTIGISKPGKLEGQ+TR+CATHLHQLHVCLPSSR+KTRLLYRMSL
Sbjct: 335 PYPIDMEFRPPCMVLSTIGISKPGKLEGQSTRECATHLHQLHVCLPSSRQKTRLLYRMSL 394

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA VLKH PFM YLW+HFAEQVLNEDLRLVLGQQERM NGANVWN PV YDKLGVRYRL
Sbjct: 395 DFAGVLKHFPFMHYLWKHFAEQVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGVRYRL 454

Query: 361 WRDALEKGAKQLPFMK 376
           WRDA+E+GAKQLPF K
Sbjct: 455 WRDAVERGAKQLPFRK 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492578|ref|XP_002284499.2| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Vitis vinifera] gi|302141810|emb|CBI19013.3| unnamed protein product [Vitis vinifera]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/378 (85%), Positives = 351/378 (92%), Gaps = 2/378 (0%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSK--QSLDIVKGKLPRKSLNVSGPVQPYNTRLK 58
           ME LVNDRLLQDR+T+ ++QT  S S S    SLD+VK KLP+KSLNVSGPVQPY+ RLK
Sbjct: 158 MEELVNDRLLQDRNTADSNQTSTSTSPSTSTASLDMVKRKLPQKSLNVSGPVQPYHPRLK 217

Query: 59  NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR 118
           NFW+PVAFSTDLKDDTM+P DCFEEPWV+FRG+DG PGCV+NTCAHRACPLHLGSVNEGR
Sbjct: 218 NFWYPVAFSTDLKDDTMIPIDCFEEPWVVFRGQDGKPGCVRNTCAHRACPLHLGSVNEGR 277

Query: 119 IQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPP 178
           IQCPYHGWEYSTDGKCEKMPST+L NVKIKSLPC EQEGMIWIWPG +PPTAT+P L PP
Sbjct: 278 IQCPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCLEQEGMIWIWPGSDPPTATLPSLQPP 337

Query: 179 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGY 238
            GF+IHAEIVMELP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGY
Sbjct: 338 PGFKIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGY 397

Query: 239 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRM 298
           WDPYPIDMEFRPPCMVLSTIGISKPGKLEGQ+T+QCATHLHQLHVCLPSSR KTRLLYRM
Sbjct: 398 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCATHLHQLHVCLPSSRDKTRLLYRM 457

Query: 299 SLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRY 358
           SLDFA VL+H+PFMQYLWR+FAE+VLNEDLRLVLGQQ+RM  GANVWN PV YDKLGVRY
Sbjct: 458 SLDFAPVLQHIPFMQYLWRYFAEKVLNEDLRLVLGQQDRMLMGANVWNCPVSYDKLGVRY 517

Query: 359 RLWRDALEKGAKQLPFMK 376
           RLWRDA+E+GAK+LPF +
Sbjct: 518 RLWRDAVERGAKRLPFTE 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549331|ref|XP_003543047.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/374 (85%), Positives = 346/374 (92%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LVNDRLLQDR T+   QT +SPSTS  SL   K + PRKSLNVSGPVQ Y+  LKNF
Sbjct: 153 MEELVNDRLLQDRSTTDVAQTSSSPSTSANSLVTEKRRQPRKSLNVSGPVQSYHPHLKNF 212

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAFS DLKDDTM+P +CFEEPWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQ
Sbjct: 213 WYPVAFSNDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQ 272

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEY+TDGKCEKMPST+  NVKIKS+PCFE+EGMIWIWPG++PP AT+P +LPPSG
Sbjct: 273 CPYHGWEYTTDGKCEKMPSTRQLNVKIKSVPCFEKEGMIWIWPGNDPPAATLPSILPPSG 332

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLV FLTPASGLQGYWD
Sbjct: 333 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVNFLTPASGLQGYWD 392

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEFRPPCMVLSTIGISKPGKLEGQ+TR+C+THLHQLHVCLPSS++KTRLLYRMSL
Sbjct: 393 PYPIDMEFRPPCMVLSTIGISKPGKLEGQSTRECSTHLHQLHVCLPSSKQKTRLLYRMSL 452

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA +LKH+P M+YLWRHFAEQVLNEDLRLV+GQQERMNNGANVWN PV YDKLGVRYR+
Sbjct: 453 DFAPLLKHIPLMKYLWRHFAEQVLNEDLRLVVGQQERMNNGANVWNFPVAYDKLGVRYRM 512

Query: 361 WRDALEKGAKQLPF 374
           WRDALE+GAKQLPF
Sbjct: 513 WRDALERGAKQLPF 526

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509409|ref|XP_003523442.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/376 (85%), Positives = 350/376 (93%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LVND+LLQ+R T+   QT +SPSTS + +DI K + PRKSL++SGPVQ Y+  LKNF
Sbjct: 155 MEELVNDKLLQERSTTEVSQTSSSPSTSFKPVDIEKRRSPRKSLDISGPVQSYHPHLKNF 214

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAFSTDLKDDTM+P +CFEEPWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQ
Sbjct: 215 WYPVAFSTDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQ 274

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEY+TDGKCEKMPST+L NVKIKSLPCFE EGMIW+WPG++PPTAT+P LLPPSG
Sbjct: 275 CPYHGWEYTTDGKCEKMPSTRLLNVKIKSLPCFETEGMIWVWPGNDPPTATLPSLLPPSG 334

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           FE+HAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD
Sbjct: 335 FEVHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 394

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEFRPPCMVLSTIGISKPGKLEGQ+T QCATHLHQLHVCLPSS++KTRLLYRMSL
Sbjct: 395 PYPIDMEFRPPCMVLSTIGISKPGKLEGQSTSQCATHLHQLHVCLPSSKQKTRLLYRMSL 454

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA VLKH+PFMQ+LWR+FAEQVLNEDLRLVLGQQERMNNGANVWN PV YDKLG+RYRL
Sbjct: 455 DFAPVLKHIPFMQHLWRYFAEQVLNEDLRLVLGQQERMNNGANVWNFPVSYDKLGIRYRL 514

Query: 361 WRDALEKGAKQLPFMK 376
           WR+ALE+G KQ PF K
Sbjct: 515 WRNALERGNKQPPFSK 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515896|ref|XP_003526633.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/376 (85%), Positives = 351/376 (93%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LVND+LLQ+R T+   QT +SPSTS + +D+ K + PRKSL++SGPVQ Y+T LKNF
Sbjct: 155 MEELVNDKLLQERTTTEVSQTSSSPSTSFKPVDVEKRRPPRKSLDISGPVQSYHTHLKNF 214

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAFSTDLKDDTM+P +CFEEPWVIFRGKDG PGCVQNTCAHRACPLHLGSV EGRIQ
Sbjct: 215 WYPVAFSTDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVKEGRIQ 274

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEY+TDGKCEKMPST+L NVKIKSLPCFE+EGMIW+WPG++PPTAT+P LLPPSG
Sbjct: 275 CPYHGWEYTTDGKCEKMPSTRLLNVKIKSLPCFEKEGMIWVWPGNDPPTATLPSLLPPSG 334

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           FE+HAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD
Sbjct: 335 FEVHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 394

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEFRPPCMVLSTIGISKPGKLEGQ+T QCATHLHQLHVCLPSS++KTRLLYRMSL
Sbjct: 395 PYPIDMEFRPPCMVLSTIGISKPGKLEGQSTSQCATHLHQLHVCLPSSKQKTRLLYRMSL 454

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA VLKH+PFMQ+LWR+FAEQVLNEDLRLVLGQQERMNNGANVWN PV YDKLGVRYRL
Sbjct: 455 DFAPVLKHIPFMQHLWRYFAEQVLNEDLRLVLGQQERMNNGANVWNFPVSYDKLGVRYRL 514

Query: 361 WRDALEKGAKQLPFMK 376
           WR+ALE+G KQ PF K
Sbjct: 515 WRNALEQGTKQPPFSK 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082298|ref|XP_002306638.1| predicted protein [Populus trichocarpa] gi|222856087|gb|EEE93634.1| predicted protein [Populus trichocarpa]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/374 (86%), Positives = 344/374 (91%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LVNDRLLQDR+ + +DQ   SPSTS QSLD VK K PRK+L VSGPVQPY+  LKNF
Sbjct: 158 MEELVNDRLLQDRNPAESDQASPSPSTSTQSLDTVKNKSPRKNLKVSGPVQPYHPHLKNF 217

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAFSTDLKD TM+P DCFEEPWV+FRG DG PGCV+NTCAHRACPLHLGSVNEGR++
Sbjct: 218 WYPVAFSTDLKDGTMIPIDCFEEPWVLFRGMDGKPGCVRNTCAHRACPLHLGSVNEGRVR 277

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEYSTDGKCEKMPST+L NVKIKSLPCFEQEGMI +WPG +PP AT+P L PP G
Sbjct: 278 CPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCFEQEGMILVWPGSDPPAATLPSLQPPPG 337

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           F++HAEIVMELP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD
Sbjct: 338 FQVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 397

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEFRPPCMVLSTIGISKPGKLEGQ+TR+CATHLHQLHVCLPSSR KTRLLYRMSL
Sbjct: 398 PYPIDMEFRPPCMVLSTIGISKPGKLEGQSTRECATHLHQLHVCLPSSRHKTRLLYRMSL 457

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA VLKHVPFM YLWRHFAEQVLNEDLRLVLGQQERM NGANVWN PV YDKLGVRYRL
Sbjct: 458 DFAPVLKHVPFMHYLWRHFAEQVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGVRYRL 517

Query: 361 WRDALEKGAKQLPF 374
           WRDA+EKGAKQLPF
Sbjct: 518 WRDAVEKGAKQLPF 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465447|ref|XP_004150439.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus] gi|449513335|ref|XP_004164299.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/374 (81%), Positives = 344/374 (91%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LV+DRLLQDR+T+  D     P TS Q LD +    P+KSLNVSGPV+PY+ RLKNF
Sbjct: 157 MEELVHDRLLQDRNTAELDSPSTLPGTSTQPLDSINRSSPKKSLNVSGPVEPYHPRLKNF 216

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAFS+DLK+D M+PFDCFEEPWV+FRGKDG PGC++NTCAHRACPLHLGSVN+GR+Q
Sbjct: 217 WYPVAFSSDLKNDIMIPFDCFEEPWVLFRGKDGNPGCIRNTCAHRACPLHLGSVNDGRVQ 276

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEYSTDGKCEKMPST+L NVKIKSLPCFE+EGMIW+WPG++PP A +P L PP G
Sbjct: 277 CPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCFEKEGMIWVWPGNDPPAANLPSLKPPPG 336

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           F+IHAE+V+E+P+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD
Sbjct: 337 FQIHAELVIEIPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 396

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEFRPPCMVLSTIGISKPGKLEGQ+TR+C+THLHQLHVCLPS+R+KTRLLYRMSL
Sbjct: 397 PYPIDMEFRPPCMVLSTIGISKPGKLEGQSTRECSTHLHQLHVCLPSTRQKTRLLYRMSL 456

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA VLK +PFM YLWRHFAEQVLNEDLRLV+GQQERM NGAN+WN+PV YDKLGVRYRL
Sbjct: 457 DFAPVLKQIPFMHYLWRHFAEQVLNEDLRLVIGQQERMVNGANIWNMPVSYDKLGVRYRL 516

Query: 361 WRDALEKGAKQLPF 374
           WR+A+E+GAKQLPF
Sbjct: 517 WRNAVEEGAKQLPF 530

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110289597|gb|ABB48003.2| chlorophyll a oxygenase, putative, expressed [Oryza sativa Japonica Group]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/376 (82%), Positives = 338/376 (89%), Gaps = 3/376 (0%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCAS--PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLK 58
           ME LVNDRLLQD  +S +   C S  PSTS  S  +V  K PR+SLNVSGPVQPYN  LK
Sbjct: 144 METLVNDRLLQDGGSSASTAECTSLAPSTSSAS-RVVNKKPPRRSLNVSGPVQPYNPSLK 202

Query: 59  NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR 118
           NFW+PVAFS+DLKDDTMVP DCFEE WVIFRGKDG PGCV NTCAHRACPLHLGSVNEGR
Sbjct: 203 NFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGR 262

Query: 119 IQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPP 178
           IQCPYHGWEYSTDGKCEKMPST++ NV+I+SLPCFEQEGM+WIWPG++PP +TIP LLPP
Sbjct: 263 IQCPYHGWEYSTDGKCEKMPSTKMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPP 322

Query: 179 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGY 238
           SGF IHAEIVMELP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP+SGLQGY
Sbjct: 323 SGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGY 382

Query: 239 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRM 298
           WDPYPIDMEFRPPCMVLSTIGISKPGKLEG++T+QC+THLHQLH+CLPSSR KTRLLYRM
Sbjct: 383 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRM 442

Query: 299 SLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRY 358
           SLDFA  +KHVPFM  LW HFAE+VLNEDLRLVLGQQERM NGANVWN PV YDKLG+RY
Sbjct: 443 SLDFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRY 502

Query: 359 RLWRDALEKGAKQLPF 374
           RLWRDA+E+G  +LPF
Sbjct: 503 RLWRDAIERGVDRLPF 518

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2823671	536	CH1 "CHLORINA 1" [Arabidopsis	0.989	0.697	0.759	5e-163
TAIR|locus:2047329	539	TIC55-II "translocon at the in	0.798	0.560	0.244	1.7e-19
UNIPROTKB|Q4KB09	352	vanA "Vanillate O-demethylase,	0.285	0.306	0.345	8.4e-13
UNIPROTKB|Q48IV9	354	vanA "Vanillate monooxygenase,	0.283	0.302	0.330	3.6e-12
UNIPROTKB|Q4KAM4	363	prnD "Aminopyrrolnitrin oxidas	0.312	0.325	0.296	5e-09
TAIR|locus:2131406	559	ACD1-LIKE "AT4G25650" [Arabido	0.304	0.205	0.251	1.3e-08
UNIPROTKB|D5IGG0	378	carAa "Carbazole 1,9a-dioxygen	0.338	0.338	0.304	1.7e-08
TAIR|locus:2082122	537	ACD1 "ACCELERATED CELL DEATH 1	0.283	0.199	0.311	3.3e-08
FB|FBgn0259697	429	nvd "neverland" [Drosophila me	0.529	0.466	0.267	4.8e-08
UNIPROTKB|F1NKZ9	409	LOC427775 "Uncharacterized pro	0.325	0.300	0.305	2.7e-07

TAIR|locus:2823671 CH1 "CHLORINA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
 Identities = 284/374 (75%), Positives = 320/374 (85%)

Query:     1 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
             ME LVNDRLL  R  +  D+  +S + S   LD  K     KSLNVSGPV PY+  LKNF
Sbjct:   161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNF 220

Query:    61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
             W+PVAF+ DLK DTMVP +CFE+PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQ
Sbjct:   221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280

Query:   121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
             CPYHGWEYSTDG+C+KMPST+L  VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSG
Sbjct:   281 CPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSG 340

Query:   181 FEIHAEIVMELPIEHGXXXXXXXXXAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
             F IHAE+VM+LP+EHG         AHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWD
Sbjct:   341 FLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD 400

Query:   241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
             PYPIDMEF+PPC+VLSTIGISKPGKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSL
Sbjct:   401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSL 460

Query:   301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
             DFA +LK++PFM++LWRHFAEQVLNEDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRL
Sbjct:   461 DFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRL 520

Query:   361 WRDALEKGAKQLPF 374
             WR+A+++G  +LPF
Sbjct:   521 WRNAVDRGDDKLPF 534

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2047329 TIC55-II "translocon at the inner envelope membrane of chloroplasts 55-II" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 80/327 (24%), Positives = 137/327 (41%)

Query:    61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
             W+P+  + ++ +D  +    ++   V+++  +G   C ++ C HR   L  G + +GR++
Sbjct:    88 WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147

Query:   121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCF------EQEGMIWIWPGDE-PPTAT-I 172
             C YHGW++  +GKC K+P     + KI    C       + +G++W+W   + PP    +
Sbjct:   148 CLYHGWQFEGEGKCVKIPQLPA-SAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPNPEKL 206

Query:   173 PCL---LPPSGFEIHAEIVMELPIEHGXXXXXXXXXAHAPFTHTST-F-AKGWSVPSLVK 227
             P       P  F+I      ELP +H          AH P +H  T F AK      LV 
Sbjct:   207 PWFENFARPGFFDIST--THELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAQPLVF 264

Query:   228 FLTPAS--GLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCL 285
              +T  S  G  G W       +        +   +    + EG++  +   +   L +C 
Sbjct:   265 EVTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNNREFEGKDGVK--NYFSGLFLCR 322

Query:   286 PSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQE-RMNNGANV 344
             P+ + K+ L+ R  +   S L  V   Q+ W   A +V  +D+  +  Q E  M      
Sbjct:   323 PTGQGKSMLIVRFGVTKRSPLVSV-LPQWFWHQNACKVFEQDMGFLSSQNEVLMKEKVPT 381

Query:   345 WNLPVGY---DKLGVRYRLWRDALEKG 368
              +L +     D     YR W D +  G
Sbjct:   382 KDLYLNLKSSDTWVAEYRKWMDKVGHG 408

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=IMP

UNIPROTKB|Q4KB09 vanA "Vanillate O-demethylase, oxygenase subunit" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 186 (70.5 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
 Identities = 38/110 (34%), Positives = 54/110 (49%)

Query:    58 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 117
             KN W+      +L+   +    C E   V +R  +G    V++ C HR  PL LG V  G
Sbjct:     4 KNAWYVACTPDELQGKPLGRQICGEH-MVFYRAHEGRVTAVEDFCPHRGAPLSLGYVENG 62

Query:   118 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKI-KSLPCFEQEGMIWIWPGDE 166
              + C YHG     DGK  +MP  ++R     K+    E+ G IW+WPGD+
Sbjct:    63 NLVCGYHGLVMGCDGKTVEMPGQRVRGFPCNKTFAAVERYGFIWVWPGDQ 112

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0018489 "vanillate monooxygenase activity" evidence=ISS

UNIPROTKB|Q48IV9 vanA "Vanillate monooxygenase, oxygenase subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 176 (67.0 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 36/109 (33%), Positives = 54/109 (49%)

Query:    58 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 117
             KN W+    + ++ D  +    C  E  V +R ++     +++ C HR  PL LG V  G
Sbjct:     4 KNAWYVACTADEVADKPLGRQIC-NERMVFYRDQNQQVVALEDFCPHRGAPLSLGYVENG 62

Query:   118 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKI-KSLPCFEQEGMIWIWPGD 165
             ++ C YHG     DGK   MP  ++R     K+    E+ G IW+WPGD
Sbjct:    63 QLVCGYHGLVMGGDGKTAAMPGQRVRGFPCNKTFAAVERYGFIWVWPGD 111

GO:0018489 "vanillate monooxygenase activity" evidence=ISS

GO:0042190 "vanillin catabolic process" evidence=ISS

UNIPROTKB|Q4KAM4 prnD "Aminopyrrolnitrin oxidase PrnD" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 159 (61.0 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 38/128 (29%), Positives = 55/128 (42%)

Query:    55 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 114
             TR+   W+    S  L+D        F  P+V +R   G    +   C+H    L  G +
Sbjct:    23 TRVAASWYVAMRSNGLRDKPK-ELTLFGRPYVAWRAATGQAVVMDRHCSHLGANLADGRI 81

Query:   115 NEGRIQCPYHGWEYSTDGKCEKMPS-----TQL----RNVKIKSLPCFEQEGMIWIWPGD 165
              +G IQCP+H W Y   GKC  +P       QL    R  +  +L   E+ G +W+W G 
Sbjct:    82 KDGCIQCPFHHWRYDEQGKCVHIPGHSEVVRQLEPVPRAARQPTLVTTERYGYVWVWYGS 141

Query:   166 EPPTATIP 173
               P   +P
Sbjct:   142 PQPLHPLP 149

GO:0003824 "catalytic activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0019748 "secondary metabolic process" evidence=ISS

TAIR|locus:2131406 ACD1-LIKE "AT4G25650" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 33/131 (25%), Positives = 55/131 (41%)

Query:    98 VQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIK 148
             + +TC HR  PL  G +++ GR+QC YHGW ++  G C+ +P            +   + 
Sbjct:   123 MDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVA 182

Query:   149 SLPCFEQEGMIWIWPGDEPPTATI-----PCLLPPSGFEIHAEIV--MELPIEHGXXXXX 201
               P   Q  +IW WP  +P    I     P  +P        +++   ++P  +      
Sbjct:   183 VYPSTVQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVEN 242

Query:   202 XXXXAHAPFTH 212
                 AH P+ H
Sbjct:   243 LMDPAHVPYAH 253

GO:0009055 "electron carrier activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|D5IGG0 carAa "Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa" [Sphingomonas sp. (taxid:28214)]

 Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 43/141 (30%), Positives = 70/141 (49%)

Query:    51 QPY-NTRL--KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 107
             +PY   +L  +N W+PV  ++++ + T VP     E  ++     G    +Q+ C HR  
Sbjct:    16 EPYIRAKLGFRNHWYPVRLASEIAEGTPVPVKLLGEK-ILLNRVGGKVYAIQDRCLHRGV 74

Query:   108 PL--HLGSVNEGRIQCPYHGWEYS-TDGKCEKM---P-STQLRNVKIKSLPCFEQEGMIW 160
              L   +   ++  I C YHGW Y   DG+   +   P S Q+    +K+ P  E +G+I+
Sbjct:    75 TLSDRVECYSKNTISCWYHGWTYRWDDGRLVDILTNPGSVQIGRRALKTFPVEEAKGLIF 134

Query:   161 IWPGDEPPTATIPCLLPPSGF 181
             ++ GD  PT  I  + PP GF
Sbjct:   135 VYVGDGEPTPLIEDV-PP-GF 153

GO:0018564 "carbazole 1,9a-dioxygenase activity" evidence=ISS

GO:0046232 "carbazole catabolic process" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

TAIR|locus:2082122 ACD1 "ACCELERATED CELL DEATH 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 38/122 (31%), Positives = 57/122 (46%)

Query:    58 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
             ++ W+PV+   DL  +   PF       V+ F   D       + C HR  PL  G ++E
Sbjct:    85 RDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDE 144

Query:   117 -GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK------IKSLPCFEQEGMIWIWPG 164
              G +QC YHGW +   G C ++P       + R VK      IK  P    +G++++WP 
Sbjct:   145 NGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIK-FPTMVSQGLLFVWP- 202

Query:   165 DE 166
             DE
Sbjct:   203 DE 204

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=TAS

GO:0032441 "pheophorbide a oxygenase activity" evidence=IDA

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0008219 "cell death" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

FB|FBgn0259697 nvd "neverland" [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 60/224 (26%), Positives = 92/224 (41%)

Query:    59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEG 117
             N W+ +  S+ LK        C  E  VIFR K  I   +   C H    L +G SV + 
Sbjct:    95 NGWYGILKSSQLKAGEATCVSCLGEDLVIFRSKKDIVFILDAYCPHLGANLGIGGSVADD 154

Query:   118 RIQCPYHGWEY-STDGKCEKMP-STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 174
              + CP+H W++  TDG C  +P ST + +  K+K     E +G I+IW   E     +P 
Sbjct:   155 CVICPFHQWKFRGTDGLCINIPYSTSVPKGSKLKKWISQEVDGFIFIWYHAEQ--TELPW 212

Query:   175 LLP-PSG-------FEIHAEIVMELPIEHGXXXXXXXXXAHAPFTHTSTFAKG-WSVPSL 225
              LP P G       +  H E  +   I+           AH    H   F  G W+    
Sbjct:   213 DLPVPMGEIDDTFVYHGHNEFYINCHIQE--IPENGADIAHFNAIHKKNFINGSWAQKKR 270

Query:   226 VKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQ 269
             + F   +   +  W P+   +++      L+ + +S   KL G+
Sbjct:   271 L-FGLGSHHWKARWSPFTGKLKY------LAEVNLSHTFKLFGK 307

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0007552 "metamorphosis" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0002168 "instar larval development" evidence=IMP

GO:0045456 "ecdysteroid biosynthetic process" evidence=IMP

UNIPROTKB|F1NKZ9 LOC427775 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 40/131 (30%), Positives = 57/131 (43%)

Query:    36 KGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIP 95
             +G   R+S        PY     N W+ V  S  L    +       E    FR +DG  
Sbjct:    51 RGLSARRSRRPGALPPPY----PNGWYRVLDSAQLPRGAVRSLALLGERLAAFRTQDGQA 106

Query:    96 GCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEY-STDGKCEKMP-STQLRN-VKIKSLP 151
               V   C H    L  G    G  I+CP+HGW +   DGKC  +P + ++ +  K++S P
Sbjct:   107 HVVDAYCPHLGADLAAGGRVVGSCIECPFHGWRFRGEDGKCTHIPYAGKVPDFAKVRSWP 166

Query:   152 CFEQEGMIWIW 162
             C E  GM+ +W
Sbjct:   167 CCEVNGMLLLW 177

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S7E1	CAO_ORYSJ	1, ., 1, 4, ., 1, 3, ., 1, 2, 2	0.8271	0.9867	0.6894	yes	no
Q9MBA1	CAO_ARATH	1, ., 1, 4, ., 1, 3, ., 1, 2, 2	0.7834	0.9894	0.6977	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.12	0.963
3rd Layer	1.13.12.14	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.1788.1 hypothetical protein (506 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
PLN02281	536	PLN02281, PLN02281, chlorophyllide a oxygenase	0.0
cd04337	129	cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o	3e-83
PLN00095	394	PLN00095, PLN00095, chlorophyllide a oxygenase; Pr	5e-69
COG4638	367	COG4638, HcaE, Phenylpropionate dioxygenase and re	1e-32
cd03469	118	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o	1e-31
cd03479	144	cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem	4e-28
cd03532	116	cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem	3e-26
cd04338	134	cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L	2e-24
pfam08417	91	pfam08417, PaO, Pheophorbide a oxygenase	3e-22
cd03480	138	cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron	4e-18
pfam00355	99	pfam00355, Rieske, Rieske [2Fe-2S] domain	1e-17
cd03467	98	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster	2e-17
cd03548	136	cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-hem	2e-13
cd03537	123	cd03537, Rieske_RO_Alpha_PrnD, This alignment mode	3e-13
PLN02518	539	PLN02518, PLN02518, pheophorbide a oxygenase	7e-13
cd03531	115	cd03531, Rieske_RO_Alpha_KSH, The alignment model	3e-10
COG2146	106	COG2146, {NirD}, Ferredoxin subunits of nitrite re	2e-08
cd03478	95	cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f	2e-08
cd03542	123	cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iro	2e-07
cd08878	196	cd08878, RHO_alpha_C_DMO-like, C-terminal catalyti	4e-07
cd03535	123	cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron	8e-07
cd03541	118	cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron	9e-07
cd03528	98	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro	3e-06
TIGR03229	433	TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenas	1e-05
cd00680	188	cd00680, RHO_alpha_C, C-terminal catalytic domain	2e-05
cd03538	146	cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme ir	1e-04
cd03545	150	cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-he	3e-04
cd03472	128	cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-hem	4e-04
cd03530	98	cd03530, Rieske_NirD_small_Bacillus, Small subunit	5e-04
cd03539	129	cd03539, Rieske_RO_Alpha_S5H, This alignment model	5e-04
TIGR03228	438	TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxyge	6e-04

>gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase

 Score =  625 bits (1612), Expect = 0.0
 Identities = 293/374 (78%), Positives = 329/374 (87%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
           ME LVNDRLL  R  +  D+  +S + S   LD  K     KSLNVSGPV PY+  LKNF
Sbjct: 161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNF 220

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+PVAF+ DLK DTMVP +CFE+PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQ
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280

Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
           CPYHGWEYSTDG+C+KMPST+L  VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSG
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSG 340

Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
           F IHAE+VM+LP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWD
Sbjct: 341 FLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD 400

Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
           PYPIDMEF+PPC+VLSTIGISKPGKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSL
Sbjct: 401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSL 460

Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
           DFA +LK++PFM++LWRHFAEQVLNEDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRL
Sbjct: 461 DFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRL 520

Query: 361 WRDALEKGAKQLPF 374
           WR+A+++G  +LPF
Sbjct: 521 WRNAVDRGDDKLPF 534

Length = 536

>gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b

 Score =  248 bits (636), Expect = 3e-83
 Identities = 81/129 (62%), Positives = 96/129 (74%)

Query: 44  LNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA 103
             V G        L+NFW+PV FS DLK DTMVPF+ F +PWV+FR +DG PGC+++ CA
Sbjct: 1   SRVLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECA 60

Query: 104 HRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 163
           HRACPL LG V EGRIQCPYHGWEY  DG+C KMPST+  NV I +LPC EQ+GMIW+WP
Sbjct: 61  HRACPLSLGKVIEGRIQCPYHGWEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWP 120

Query: 164 GDEPPTATI 172
           GD+PP A  
Sbjct: 121 GDDPPAALP 129

CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner chloroplast membrane; Ptc 52, a novel 52 kDa protein isolated from chloroplasts; and LLS1/Pao (Lethal-leaf spot 1/pheophorbide a oxygenase). Length = 129

>gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional

 Score =  221 bits (565), Expect = 5e-69
 Identities = 104/306 (33%), Positives = 156/306 (50%), Gaps = 38/306 (12%)

Query: 58  KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
           +  WFPVAF+  L+D D ++ FD F  PWV+FR  DG  GC+++ CAHRACPL LG + +
Sbjct: 70  RAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVD 129

Query: 117 GRIQCPYHGWEYSTDGKCEKMPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 174
           G+ QCPYHGWEY T G+C KMPS +  L+ V   + P  E++G I++W G+  P   +  
Sbjct: 130 GKAQCPYHGWEYETGGECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGP 189

Query: 175 -------------------LLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST 215
                                P  GF   AE++ ++ ++   +L+ LL +        +T
Sbjct: 190 EAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIKLDADEVLERLLAIGERA-RREAT 248

Query: 216 FAKGWSVPSLVK-FLTPASG-------LQGYWDPYPIDMEFRPPCMVLSTIGIS-KPGKL 266
            +   S     +  L P  G       L+G  D  P    F+P C++ STI +   PG  
Sbjct: 249 VSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRDAVPQSATFKPACVIASTIALEDGPGGG 308

Query: 267 EGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQ-YLWRHFAEQVLN 325
           +G +      ++ QLHVCLP+     RLL+R++ DF +V +        +W + A  VL 
Sbjct: 309 DGTD-----MNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAGDVWANLAMMVLK 363

Query: 326 EDLRLV 331
           E+L  V
Sbjct: 364 EELEDV 369

Length = 394

>gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]

 Score =  124 bits (314), Expect = 1e-32
 Identities = 77/338 (22%), Positives = 115/338 (34%), Gaps = 43/338 (12%)

Query: 58  KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NE 116
              W+ VA S++L     +      EP V+ R KDG    + + C HR   L  G V  +
Sbjct: 25  YKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGK 84

Query: 117 GRIQCPYHGWEYSTDGKCEKMPSTQLR------NVKIKSLPCFEQEGMIWIWPGDEPPTA 170
           GR+ CPYHGW Y  DG+   +P+             +K  P  E+ G IWIW GD PP A
Sbjct: 85  GRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAA 144

Query: 171 TIPCLLPPSGFEIHAEIVM-------ELPIEHGLLLDNLLD-LAHAPFTHTST--FAKGW 220
                LPP+         +        +P    L ++N LD   H PF H          
Sbjct: 145 --EAFLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHT 202

Query: 221 SVPSLVKFLTPASGLQGYWD-PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTR-QCATHL 278
            V +          +      P+   +                 G  E            
Sbjct: 203 EVGAYDVTAGGHWDVILATGNPFFQPLGS-------EASSYGFDGNYEVHVPGAYLLFLY 255

Query: 279 HQLHVC-------------LPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLN 325
               V               P    +T +     +    V   V +   L R F +++L+
Sbjct: 256 PNSTVWNHVTVDDVIVFFVQPIDEDETMVTLVWLVLPDLVEG-VDYFDKLIRRFRQEILD 314

Query: 326 EDLRLVLGQQERMNNGANVWNL-PVGYDKLGVRYRLWR 362
           +D  ++  QQ    + A      P+  D   V++R W 
Sbjct: 315 QDREILENQQPGRLSPALERGPYPIREDAGSVQFRRWL 352

Length = 367

>gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms

 Score =  115 bits (291), Expect = 1e-31
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 61  WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGR 118
           W+ V  S++L +    V  +   EP V+ R +DG      N C HR   L  G   N GR
Sbjct: 1   WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGR 60

Query: 119 IQCPYHGWEYSTDGKCEKMPSTQ------LRNVKIKSLPCFEQEGMIWIWPGDEPP 168
           + CPYHGW Y  DGK   +P  +         + ++++P  E  G+I++    + P
Sbjct: 61  LVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP 116

These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the initial source of two electrons for dioxygen activation. Length = 118

>gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)

 Score =  106 bits (268), Expect = 4e-28
 Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 48  GPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 106
           GP  P    L+ +W PVA S++L  D   V      E  V FR   G  G +   C HR 
Sbjct: 9   GPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRG 68

Query: 107 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP-----STQLRNVKIKSLPCFEQEGMIWI 161
             L  G V E  ++C YHGW++  DG+C +MP     S   + V+  + P  E+ G++W 
Sbjct: 69  ASLVFGRVEECGLRCCYHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWA 128

Query: 162 W--PGDEPP 168
           +  P +E P
Sbjct: 129 YMGPAEEAP 137

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form the 4,5-dihydro-cis-dihydrodiol of phthalate (DHD). CBDO, together with CbaC dehydrogenase, converts the environmental pollutant 3CBA to protocatechuate (PCA) and 5-Cl-PCA, which are then metabolized by the chromosomal PCA meta (extradiol) ring fission pathway. POB-dioxygenase catalyzes the initial catabolic step in the angular dioxygenation of phenoxybenzoate, converting mono- and dichlorinated phenoxybenzoates to protocatechuate and chlorophenols. These phenoxybenzoates are metabolic products formed during the degradation of pyrethroid insecticides. Length = 144

>gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score =  100 bits (252), Expect = 3e-26
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 57  LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
            +N W+  A++ +L  D  +      EP V++R +DG    +++ C HR+ PL  GSV  
Sbjct: 2   PRNAWYVAAWADEL-GDKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEG 60

Query: 117 GRIQCPYHGWEYSTDGKCEKMP--STQLRNVKIKSLPCFEQEGMIWIWPGDEP 167
           G + C YHG E+ +DG+C  MP          ++S P  E++ +IWIW GD  
Sbjct: 61  GGLVCGYHGLEFDSDGRCVHMPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degradation pathway of lignin-derived compounds such as ferulic acid and vanillin by soil microbes. DDmC is the oxygenase component of a three-component dicamba O-demethylase found in Pseudomonas maltophila, that catalyzes the conversion of a widely used herbicide called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic acid) to DCSA (3,6-dichlorosalicylic acid). Length = 116

>gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane

 Score = 97.2 bits (242), Expect = 2e-24
 Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 11/126 (8%)

Query: 50  VQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 109
           V  Y+ R +  W+P+    D+  D  +    ++EP+V+FR ++G   C+++ C HR   L
Sbjct: 9   VAEYDWREE--WYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKL 66

Query: 110 HLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIW 162
             G + +G+++C YHGW++  +GKC K+P  QL       +N  +KS    + +G++W+W
Sbjct: 67  SEGQLIDGKLECLYHGWQFGGEGKCVKIP--QLPADAKIPKNACVKSYEVRDSQGVVWMW 124

Query: 163 PGDEPP 168
             +  P
Sbjct: 125 MSEATP 130

This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Length = 134

>gnl|CDD|219832 pfam08417, PaO, Pheophorbide a oxygenase

 Score = 89.7 bits (223), Expect = 3e-22
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 17/103 (16%)

Query: 248 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS-VL 306
           F  PC++LST  +            +C  HLH +  C+P S  K+RLL R   +F S +L
Sbjct: 1   FEAPCLLLSTGVL----------KAECKKHLHTVFYCIPVSPGKSRLLARFPRNFKSPLL 50

Query: 307 KHVPFMQYLWRHFA-EQVLNEDLRLVLGQQERM--NNGANVWN 346
           K VP     W H A  +VL ED+ L+ GQ+ R+    G++ W 
Sbjct: 51  KLVP---RWWEHIAQNKVLEEDMILLHGQERRLQRRGGSDNWQ 90

This domain is found in bacterial and plant proteins to the C-terminus of a Rieske 2Fe-2S domain (pfam00355). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize, in which the domain described here is also found. Length = 91

>gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1)

 Score = 79.7 bits (197), Expect = 4e-18
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNE-GR 118
           W+PVA+  DL      PF       VI +           + C HR  PL  G ++E G 
Sbjct: 18  WYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGC 77

Query: 119 IQCPYHGWEYSTDGKCEKMP--STQLRNVK-----IKSLPCFEQEGMIWIWPGDEP 167
           ++CPYHGW +   G C+++P  +   +        + SLP   ++G++++WPG+  
Sbjct: 78  LECPYHGWSFDGSGSCQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPE 133

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The Arabidopsis-accelerated cell death gene ACD1 is involved in oxygenation of PaO. Length = 138

>gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 61  WFPVAFSTDLKDDT-MVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NE 116
           W PV   ++L +       D   E+P V+ R KDG    + N C HR  PL  G V   +
Sbjct: 2   WVPVCHESELPEPGDFKTVDLDGEDPVVVRRDKDGEVRALSNVCTHRGAPLSRGGVGNEK 61

Query: 117 GRIQCPYHGWEYS-TDGKCEKMPSTQLRN 144
           G  +CPYHGW +  + GK    P+ +   
Sbjct: 62  GGFECPYHGWRFDLSTGKLVGGPAPRPLK 90

The rieske domain has a [2Fe-2S] centre. Two conserved cysteines that one Fe ion while the other Fe ion is coordinated by two conserved histidines. Length = 99

>gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes

 Score = 76.4 bits (188), Expect = 2e-17
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W  V   ++L             P V+ R + G    + N C H+ CPL  G   +G I 
Sbjct: 1   WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIV 60

Query: 121 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE--QEGMIWIW 162
           CP HG  +    G+    P+ +        LP +    EG   +W
Sbjct: 61  CPCHGSRFDLRTGEVVSGPAPR-------PLPKYPVKVEGDGVVW 98

The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis. Length = 98

>gnl|CDD|239617 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 16/135 (11%)

Query: 51  QPYNTR---LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 107
           QPY       +N W+P  FS +L++          EP ++ R  DG    +++ C HR  
Sbjct: 2   QPYIDAKWGFRNHWYPALFSHELEEGEPKGIQLCGEP-ILLRRVDGKVYALKDRCLHRGV 60

Query: 108 PL--HLGSVNEGRIQCPYHGWEYS-TDGKCEKM----PSTQLRNVKIKSLPCFEQEGMIW 160
           PL        +G I C YHGW Y   DGK   +        +    +K+ P  E +GMI+
Sbjct: 61  PLSKKPECFTKGTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYPVEEAKGMIF 120

Query: 161 IWPGDE-----PPTA 170
           ++ GD      PP A
Sbjct: 121 VFVGDGDYADPPPLA 135

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the reduced pyridine nucleotide to the active site of OMO, where O2 activation and 2-oxoquinoline hydroxylation occurs. CARDO, which contains oxygenase (CARDO-O), ferredoxin (CARDO-F) and ferredoxin reductase (CARDO-R) components, catalyzes the dihydroxylation at the C1 and C9a positions of carbazole. The oxygenase component of OMO and CARDO contain only alpha subunits arranged in a trimeric structure. Length = 136

>gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD)

 Score = 65.7 bits (160), Expect = 3e-13
 Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W+    S DLKD        F  P V +RG  G    +   C+H    L  G V +G IQ
Sbjct: 4   WYVAMRSDDLKDKP-TELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQ 62

Query: 121 CPYHGWEYSTDGKCEKMPSTQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 168
           CP+H W Y   G+C  +P             R  +  +L   E+ G +W+W G   P
Sbjct: 63  CPFHHWRYDEQGQCVHIPGHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119

PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis. Length = 123

>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 61/226 (26%), Positives = 93/226 (41%), Gaps = 25/226 (11%)

Query: 58  KNFWFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
           ++ W+PV+   DL      PF       V+      G      + C HR  PL  G ++E
Sbjct: 88  RDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDE 147

Query: 117 -GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK-----IKSLPCFEQEGMIWIWP-- 163
            G +QC YHGW +   G C ++P       + R VK         P    +G++++WP  
Sbjct: 148 NGHLQCSYHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDE 207

Query: 164 -GDEPPTATIPCLLPPSGFEIHA----EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 218
            G E   AT P +LP   F+        I  +L   +  L++N+ D +H  F H     +
Sbjct: 208 NGWERAQATKPPMLPDE-FDDPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR 266

Query: 219 GWSVPSLVKFLTPASGLQGYW----DPYPIDMEFRPPCMVLSTIGI 260
                 L  F   +SG  G+     D   I  +F  PC  ++ I I
Sbjct: 267 RDRAKPL-PFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEI 311

Length = 539

>gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W  +  + D +D      + F    V+F   DG    +   C H    L  G+V    I 
Sbjct: 2   WHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIA 61

Query: 121 CPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIW---PGDEPPT 169
           CP+H W +  DG+C+ +P  +      + ++ P  E+ G +++W    G+ PP 
Sbjct: 62  CPFHDWRWGGDGRCKAIPYARRVPPLARTRAWPTLERNGQLFVWHDPEGNPPPP 115

The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia. Length = 115

>gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRI 119
           W  +    DL +   V        + +    DG    + N C H   PL  G V  +  +
Sbjct: 5   WIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETV 64

Query: 120 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 162
            CP HG  +    G+C + P+ +     +K+ P   + G +++ 
Sbjct: 65  VCPLHGARFDLRTGECLEPPAGK----TLKTYPVRVEGGRVFVD 104

Length = 106

>gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox)

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 64  VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPY 123
           V   +DL D  M   D  +   ++ R    +   +   C H   PL  G + +GRI+CP+
Sbjct: 3   VCRLSDLGDGEMKEVDVGDGKVLLVRQGGEV-HAIGAKCPHYGAPLAKGVLTDGRIRCPW 61

Query: 124 HGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE 154
           HG  ++   G  E  P+       + SLPC+E
Sbjct: 62  HGACFNLRTGDIEDAPA-------LDSLPCYE 86

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner. Length = 95

>gnl|CDD|239615 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 83  EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEK 136
           +P VI R KDG      N C+HR   L      N+G   CP+HGW +S  GK  K
Sbjct: 24  QPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLK 78

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol. Length = 123

>gnl|CDD|176887 cd08878, RHO_alpha_C_DMO-like, C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 29/166 (17%), Positives = 49/166 (29%), Gaps = 34/166 (20%)

Query: 197 LLLDNLLDLAHAPFTHTSTF---AKGWSVPSLVKF-------------------LTPASG 234
            +++NL+D +H  F H S+    A         +                         G
Sbjct: 14  QVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEG 73

Query: 235 LQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRL 294
               W      +EF  P ++L   G++  G      TR+    +   H   P     T  
Sbjct: 74  PVDRW----RVIEFLLPNVLLIDPGVAPAG------TREQGVRMRVTHWITPIDETTTHY 123

Query: 295 LYRMSLDFASVLKHVPFMQYLWRHFAE--QVLNEDLRLVLGQQERM 338
            +    +FA   +     +      +      NED   V  QQ  +
Sbjct: 124 FWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNEDKEAVEAQQRII 169

C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and the C-terminal catalytic domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. Oxygenases belonging to this subgroup include the alpha subunits of carbazole 1,9a-dioxygenase, phthalate dioxygenase, vanillate O-demethylase, Pseudomonas putida 2-oxoquinoline 8-monooxygenase, and Comamonas testosteroni T-2 p-toluenesulfonate dioxygenase. It also includes the C-terminal domain of the lignin biphenyl-specific O-demethylase (LigX) of the 5,5'-dehydrodivanillic acid O- demethylation system of Sphingomonas paucimobilis SYK-6. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Length = 196

>gnl|CDD|239609 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 86  VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 141
           ++ R +DG    + N+C HR    C   +G  N    +CPYHGW Y   G+   +P+ Q
Sbjct: 29  IVCRDEDGEIRAMFNSCRHRGMQVCRAEMG--NTSHFRCPYHGWTYRNTGRLVGVPAQQ 85

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 100 substrates. Included in its varied activities are the enantiospecific cis-dihydroxylation of polycyclic aromatic hydrocarbons and benzocycloalkenes, benzylic hydroxylation, N- and O-dealkylation, sulfoxidation and desaturation reactions. Length = 123

>gnl|CDD|239614 cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 85  WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG---KCEKMPSTQ 141
           +V+ R  +G      N C HRA  L  GS  +    CPYHGW Y  DG   K  +    Q
Sbjct: 27  YVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKATQATGIQ 86

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX). Length = 118

>gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W  V    +L +      D    P  ++R          + C H    L  G V  G I+
Sbjct: 1   WVRVCAVDELPEGEPKRVDVGGRPIAVYRVDGEF-YATDDLCTHGDASLSEGYVEGGVIE 59

Query: 121 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 162
           CP HG  +    GK   +P+T      +K+ P   ++G +++ 
Sbjct: 60  CPLHGGRFDLRTGKALSLPAT----EPLKTYPVKVEDGDVYVD 98

The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes. Length = 98

>gnl|CDD|132273 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 83  EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKM 137
           +P  I R KDG      N C+HR   L      N+    CP+HGW ++  GK  K+
Sbjct: 62  QPIFIARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKV 117

Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13) [Energy metabolism, Other]. Length = 433

>gnl|CDD|176852 cd00680, RHO_alpha_C, C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 40/190 (21%), Positives = 59/190 (31%), Gaps = 36/190 (18%)

Query: 197 LLLDNLLDLAHAPFTHTSTFAKGWSVPSL--------VKFLTPASGLQGYWDPYPIDMEF 248
           L ++N L+  H P  H  T A G  +P L             P  GL  +W         
Sbjct: 13  LAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYRVDDTGEGPGEGLSRHWGDGKG---- 68

Query: 249 RPPCMVLSTIGISKPGKLEGQNTRQCAT----------HLHQLHVCLPSSRKKTRLLYRM 298
                       S    L+                      Q+   +P    KTRL  R+
Sbjct: 69  ----------PQSALPGLKPGGYLYLYLFPNLMIGLYPDSLQVQQFVPIGPNKTRLEVRL 118

Query: 299 SLDFASVLKHVPFMQY-LWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVR 357
                   +     +         QVL+ED+ L    Q  + +GA     P+   + G+R
Sbjct: 119 YRPKDEDAREEFDAELESLAGILRQVLDEDIELCERIQRGLRSGAFRG-GPLSPLEEGIR 177

Query: 358 --YRLWRDAL 365
             +R  R AL
Sbjct: 178 HFHRWLRRAL 187

C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. Oxygenases belonging to this family include the alpha subunits of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase, Stenotrophomonas maltophilia dicamba O-demethylase, Ralstonia sp. U2 salicylate-5-hydroxylase, Cycloclasticus sp. strain A5 polycyclic aromatic hydrocarbon dioxygenase, toluene 2,3-dioxygenase from Pseudomonas putida F1, dioxin dioxygenase of Sphingomonas sp. Strain RW1, plant choline monooxygenase, and the polycyclic aromatic hydrocarbon (PAH)-degrading ring-hydroxylating dioxygenase from Sphingomonas CHY-1. This group also includes the C-terminal catalytic domains of MupW, part of the mupirocin biosynthetic gene cluster in Pseudomonas fluorescens, and Pseudomonas aeruginosa GbcA (glycine betaine catabolism A). This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Length = 188

>gnl|CDD|239612 cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVNEGRI-QCPYHGWEYSTDG 132
           ++P V+ R  DG    + N C H+   +   G  N G+  +CPYH W + TDG
Sbjct: 45  DQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDG 97

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine. Length = 146

>gnl|CDD|239616 cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
           + P V+ R +DG      N CAHR    C    G  N+G + C YH W Y   G  + +P
Sbjct: 48  DTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRG--NDGSLTCVYHQWAYDLKGNLKGVP 105

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobenzoates appear to be particularly recalcitrant to biodegradation, several strains utilize 2-CBA and the dCBA derivatives as a sole carbon and energy source. S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits. TERDOS is present in gram-positive bacteria and proteobacteria where it converts terephthalate (1,4-dicarboxybenzene) to protocatechuate as part of the terephthalate degradation pathway. The oxygenase component of TERDOS, called TerZ, is a hetero-hexamer with 3 alpha (TerZalpha) and 3 beta (TerZbeta) subunits. Length = 150

>gnl|CDD|239554 cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO)

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
           E+P ++ R KDG      N C HR    C    G  N     C YHGW Y T G    +P
Sbjct: 31  EDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAG--NAKAFTCTYHGWAYDTAGNLVNVP 88

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is intermediate in size between ethylbenzene and biphenyl. NBDO catalyzes the initial reaction in nitrobenzene degradation, oxidizing the aromatic rings of mono- and dinitrotoluenes to form catechol and nitrite. NBDO belongs to the naphthalene subfamily of ROs. AkbDO is involved in alkylbenzene catabolism, converting o-xylene to 2,3- and 3,4-dimethylphenol and ethylbenzene to cis-dihydrodiol. DFDO is involved in dibenzofuran degradation. Length = 128

>gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 87  IFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGW 126
           +FR  D     ++N C H+  PL  G V+   + CP H W
Sbjct: 27  VFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNW 66

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Length = 98

>gnl|CDD|239613 cd03539, Rieske_RO_Alpha_S5H, This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H)

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
           E   ++ R  DG    V+N CAHR    C    G  N     CPYH W YS  G  + +P
Sbjct: 23  ERSVIMTRDPDGGINVVENVCAHRGMRFCRERNG--NAKDFVCPYHQWNYSLKGDLQGVP 80

Query: 139 STQLRNVK 146
               R VK
Sbjct: 81  F--RRGVK 86

S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits. Length = 129

>gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 83  EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKM 137
           +P ++ R   G    + N C HR   L  +G  N+    CP+H W Y +DG+  K+
Sbjct: 62  QPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKV 117

Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases [Energy metabolism, Amino acids and amines]. Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
PLN02281	536	chlorophyllide a oxygenase	100.0
PLN02518	539	pheophorbide a oxygenase	100.0
PLN00095	394	chlorophyllide a oxygenase; Provisional	100.0
COG4638	367	HcaE Phenylpropionate dioxygenase and related ring	100.0
TIGR03228	438	anthran_1_2_A anthranilate 1,2-dioxygenase, large	100.0
TIGR03229	433	benzo_1_2_benA benzoate 1,2-dioxygenase, large sub	100.0
cd04337	129	Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase)	100.0
cd03545	150	Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox	99.98
cd03479	144	Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy	99.98
cd03537	123	Rieske_RO_Alpha_PrnD This alignment model represen	99.97
cd04338	134	Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate	99.97
cd03538	146	Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena	99.97
cd03531	115	Rieske_RO_Alpha_KSH The alignment model represents	99.97
cd03480	138	Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase	99.97
cd03532	116	Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy	99.97
cd03541	118	Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase	99.96
cd03548	136	Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy	99.96
cd03539	129	Rieske_RO_Alpha_S5H This alignment model represent	99.96
cd03472	128	Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy	99.96
cd03469	118	Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (	99.95
cd03535	123	Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase	99.95
cd03536	123	Rieske_RO_Alpha_DTDO This alignment model represen	99.95
cd03542	123	Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas	99.94
cd03528	98	Rieske_RO_ferredoxin Rieske non-heme iron oxygenas	99.93
cd03530	98	Rieske_NirD_small_Bacillus Small subunit of nitrit	99.93
cd03474	108	Rieske_T4moC Toluene-4-monooxygenase effector prot	99.93
TIGR02377	101	MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE	99.92
cd03529	103	Rieske_NirD Assimilatory nitrite reductase (NirD)	99.92
TIGR02378	105	nirD_assim_sml nitrite reductase [NAD(P)H], small	99.91
cd03478	95	Rieske_AIFL_N AIFL (apoptosis-inducing factor like	99.91
PRK09965	106	3-phenylpropionate dioxygenase ferredoxin subunit;	99.9
PF13806	104	Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A	99.88
PF00355	97	Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794	99.88
PRK09511	108	nirD nitrite reductase small subunit; Provisional	99.87
cd03467	98	Rieske Rieske domain; a [2Fe-2S] cluster binding d	99.86
COG2146	106	{NirD} Ferredoxin subunits of nitrite reductase an	99.85
cd03477	91	Rieske_YhfW_C YhfW family, C-terminal Rieske domai	99.85
cd03476	126	Rieske_ArOX_small Small subunit of Arsenite oxidas	99.8
cd08878	196	RHO_alpha_C_DMO-like C-terminal catalytic domain o	99.78
cd03471	126	Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co	99.77
TIGR02694	129	arsenite_ox_S arsenite oxidase, small subunit. Thi	99.72
cd03473	107	Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha	99.71
cd00680	188	RHO_alpha_C C-terminal catalytic domain of the oxy	99.69
cd03470	126	Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co	99.68
cd08885	190	RHO_alpha_C_1 C-terminal catalytic domain of the o	99.62
cd08887	185	RHO_alpha_C_3 C-terminal catalytic domain of the o	99.58
cd08883	175	RHO_alpha_C_CMO-like C-terminal catalytic domain o	99.58
PRK13474	178	cytochrome b6-f complex iron-sulfur subunit; Provi	99.57
cd08886	182	RHO_alpha_C_2 C-terminal catalytic domain of the o	99.55
cd08884	205	RHO_alpha_C_GbcA-like C-terminal catalytic domain	99.55
TIGR01416	174	Rieske_proteo ubiquinol-cytochrome c reductase, ir	99.4
PF00848	209	Ring_hydroxyl_A: Ring hydroxylating alpha subunit	99.38
cd03475	171	Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma	99.18
PF08417	92	PaO: Pheophorbide a oxygenase; InterPro: IPR013626	98.93
cd08882	243	RHO_alpha_C_MupW-like C-terminal catalytic domain	98.91
cd08880	222	RHO_alpha_C_ahdA1c-like C-terminal catalytic domai	98.89
PF11723	240	Aromatic_hydrox: Homotrimeric ring hydroxylase; In	98.74
cd08881	206	RHO_alpha_C_NDO-like C-terminal catalytic domain o	98.72
COG0723	177	QcrA Rieske Fe-S protein [Energy production and co	98.72
cd08879	237	RHO_alpha_C_AntDO-like C-terminal catalytic domain	98.61
TIGR03171	321	soxL2 Rieske iron-sulfur protein SoxL2. This iron-	98.43
KOG1671	210	consensus Ubiquinol cytochrome c reductase, subuni	98.4
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.15

>PLN02281 chlorophyllide a oxygenase

Probab=100.00  E-value=2.7e-72  Score=558.75  Aligned_cols=376  Identities=78%  Similarity=1.384  Sum_probs=317.7

Q ss_pred             CccccccccccCCCCcccccccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCCCCCeEEEEE
Q 017058            1 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDC   80 (378)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~   80 (378)
                      ||++|||||||+++.+.++..+++..+++...+.+.++..+|+++.++|++||..+++|.||+||.++||++|+++.+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~l  240 (536)
T PLN02281        161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIEC  240 (536)
T ss_pred             HHHHhhhhccCCCccccccccccCCcCcchhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEE
Confidence            89999999999886666666666666666778888999999999999999999999999999999999999899999999


Q ss_pred             CCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceEEcCeEE
Q 017058           81 FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW  160 (378)
Q Consensus        81 ~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~  160 (378)
                      +|++|+|||+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|+.+..+.++++|||++++|+||
T Consensus       241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVw  320 (536)
T PLN02281        241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIW  320 (536)
T ss_pred             CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEEE
Confidence            99999999999999999999999999999999999999999999999999999999998765667899999999999999


Q ss_pred             EcCCCCCCCCCCCCCCCCCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCCCCCcceeeeecCCCCCCceec
Q 017058          161 IWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD  240 (378)
Q Consensus       161 v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (378)
                      ||++++++.+.+|.+..+.++.......+++++||++++||++|+||++|+|+++++.....+..+....+.....++|.
T Consensus       321 V~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~~  400 (536)
T PLN02281        321 IWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD  400 (536)
T ss_pred             EEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEecccCCCCcccc
Confidence            99987655445565544446655555678999999999999999999999999999986655555554444444445555


Q ss_pred             CCCCcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHH
Q 017058          241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFA  320 (378)
Q Consensus       241 ~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (378)
                      ..+..++|.+||++...+++..+|...+......+.++..++.|||+++++||+||.+.++|..+.+..++...++..+.
T Consensus       401 ~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~~  480 (536)
T PLN02281        401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFA  480 (536)
T ss_pred             cCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHHHh
Confidence            44456789999999888887777664433333344566778999999999999999999999765333444444466678


Q ss_pred             hHHHhhhHHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCCC
Q 017058          321 EQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK  376 (378)
Q Consensus       321 ~~V~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l~~g~~~~p~~~  376 (378)
                      ..+|+||+.|+|+||+++......+++++++|+++++||||++++++|.+++||+.
T Consensus       481 ~~vF~ED~~iLEaQQ~~i~~~~~~~~l~l~aD~~~v~~RRWl~~~~~~~~~~pf~~  536 (536)
T PLN02281        481 EQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPFSG  536 (536)
T ss_pred             hHhhHhHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHhhcccCCCCCCC
Confidence            89999999999999999988777788999999999999999999999999999984

>PLN02518 pheophorbide a oxygenase

Probab=100.00  E-value=6.5e-51  Score=412.79  Aligned_cols=307  Identities=22%  Similarity=0.436  Sum_probs=223.3

Q ss_pred             cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEe-CCCcEEEEccCCCCCCCCCCCcccc-CCeeecCCCCeEEcCC
Q 017058           54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTD  131 (378)
Q Consensus        54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~-~~G~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~  131 (378)
                      ...+++.||+||.++||++|+++.++++|++|||||+ .+|+++||.|+|||||++|+.|+++ ++.|+||||||+||.+
T Consensus        84 ~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~  163 (539)
T PLN02518         84 KFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC  163 (539)
T ss_pred             hhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC
Confidence            3578999999999999988999999999999999998 8999999999999999999999986 6899999999999999


Q ss_pred             CceeecCCccc----------cccccccCCceEEcCeEEEcCCCCC----CCCCCCCCC---CCCCceEeeEEEEEEecC
Q 017058          132 GKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELPIE  194 (378)
Q Consensus       132 G~~~~~P~~~~----------~~~~l~~~~v~~~~G~I~v~~~~~~----~~~~l~~~~---~~~~~~~~~~~~~~~~~n  194 (378)
                      |+|+.||+...          ...++++|||+|++|+||||+++++    +...+|.+.   .+++|... ....+++++
T Consensus       164 G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~  242 (539)
T PLN02518        164 GSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFYG  242 (539)
T ss_pred             CCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEecC
Confidence            99999997521          2457999999999999999998652    112334332   23445432 345688999


Q ss_pred             hhhhhhcccccCCCCCcCcccccCCCC-Ccceeeeec-CCCCCCcee-cCCCCcceecCCeeEEEeeeecCCCCcCCCcc
Q 017058          195 HGLLLDNLLDLAHAPFTHTSTFAKGWS-VPSLVKFLT-PASGLQGYW-DPYPIDMEFRPPCMVLSTIGISKPGKLEGQNT  271 (378)
Q Consensus       195 wk~~~EN~~D~~H~~~vH~~~~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~  271 (378)
                      |++++||++|++|++|+|+++++.... .+...++.. ...++.+.+ ........|.+||++...+++.......+   
T Consensus       243 ~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~~~~~~~---  319 (539)
T PLN02518        243 YDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDTKLPIVG---  319 (539)
T ss_pred             chhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeeccccCCC---
Confidence            999999999999999999999986421 121122211 112222221 11223467899998766555431000000   


Q ss_pred             ccccceeeEEEEEecCCCCeEEEEEEeeccchhh-------ccCchhHHHHHH-HHHhHHHhhhHHHHHHHHhhccCC-C
Q 017058          272 RQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-------LKHVPFMQYLWR-HFAEQVLNEDLRLVLGQQERMNNG-A  342 (378)
Q Consensus       272 ~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~V~~ED~~ile~qq~~l~~g-~  342 (378)
                       .....+...++++|+++++||++|.+.++|...       .+.+|   .++. ...++|++||+.+++.|++.+... .
T Consensus       320 -~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~P---rW~~h~~~n~Vl~~D~~~lh~Qe~~~~~~~~  395 (539)
T PLN02518        320 -DQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVP---RWYEHWTSNKVYDGDMIVLQGQEKIFLSKSG  395 (539)
T ss_pred             -CcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCc---hHHHHhhhccchHhHHHHHHHHHHHHhhccc
Confidence             011234456788999999999999998887322       12233   2222 225789999999999998876431 1


Q ss_pred             -----------CcCCcccCCCHHHHHHHHHHHHHHcC
Q 017058          343 -----------NVWNLPVGYDKLGVRYRLWRDALEKG  368 (378)
Q Consensus       343 -----------~~~~l~~~aD~~~v~~Rr~l~~l~~g  368 (378)
                                 ...++|+++|+.+++||||+++++.|
T Consensus       396 e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g  432 (539)
T PLN02518        396 EGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNS  432 (539)
T ss_pred             cccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcC
Confidence                       12358999999999999999998653

>PLN00095 chlorophyllide a oxygenase; Provisional

Probab=100.00  E-value=5.4e-51  Score=390.29  Aligned_cols=271  Identities=37%  Similarity=0.767  Sum_probs=223.7

Q ss_pred             ccccCceEEEEecCCC-CCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCc
Q 017058           55 TRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK  133 (378)
Q Consensus        55 ~~~~~~W~~v~~~~el-~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~  133 (378)
                      ...++.||+||+++|| ++|+++.++++|++|+|||+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus        67 ~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G~  146 (394)
T PLN00095         67 ADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGGE  146 (394)
T ss_pred             CchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCCC
Confidence            4568999999999999 679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCccc--cccccccCCceEEcCeEEEcCCCCCCCC------------------CCCC-CCCCCCceEeeEEEEEEe
Q 017058          134 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVMELP  192 (378)
Q Consensus       134 ~~~~P~~~~--~~~~l~~~~v~~~~G~I~v~~~~~~~~~------------------~l~~-~~~~~~~~~~~~~~~~~~  192 (378)
                      |+.+|+.+.  .+.++++|||++++|+||||+++..+..                  .+|. +.+.++|..+.+..++++
T Consensus       147 C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dlp  226 (394)
T PLN00095        147 CAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIK  226 (394)
T ss_pred             EeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEecc
Confidence            999997532  3467899999999999999998644321                  2333 344467877677678999


Q ss_pred             cChhhhhhcccccCC-CCCcCcccccC----C---CCCcceeeeecCCCCCCceecCCCCcceecCCeeEEEeeeecC-C
Q 017058          193 IEHGLLLDNLLDLAH-APFTHTSTFAK----G---WSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK-P  263 (378)
Q Consensus       193 ~nwk~~~EN~~D~~H-~~~vH~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~-~  263 (378)
                      +.|.+++||+||++| .+|+|+.||..    .   +..+.... .....++.+.|++++++|+|.+||++.+++++.+ |
T Consensus       227 ~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~-~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l~~~~  305 (394)
T PLN00095        227 LDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGT-KIIAKVLRGGRDAVPQSATFKPACVIASTIALEDGP  305 (394)
T ss_pred             ccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhh-hhhhhhheeecccCCcceeEcCceeeeeeecccccC
Confidence            999999999999999 69999988851    1   11121111 1223467888999999999999999999999864 6


Q ss_pred             CCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchh---hccCchhHHHHHHHHHhHHHhhhHHHHHH
Q 017058          264 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWRHFAEQVLNEDLRLVLG  333 (378)
Q Consensus       264 g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~V~~ED~~ile~  333 (378)
                      |+..     .|..++.++|+|.|.++++||++++++++|..   +...+|.  ..|..++.+|+.||++++.+
T Consensus       306 g~~~-----~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~--~~w~~~a~~vl~e~l~~v~~  371 (394)
T PLN00095        306 GGGD-----GTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG--DVWANLAMMVLKEELEDVRA  371 (394)
T ss_pred             CCCc-----cccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH--HHHHHHHHHHHHHHHHHHhc
Confidence            5533     24568899999999999999999999999965   5555554  67889999999999998753

>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]

Probab=100.00  E-value=5.7e-44  Score=352.53  Aligned_cols=312  Identities=25%  Similarity=0.395  Sum_probs=218.0

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEcc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQN  100 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n  100 (378)
                      ...+.|+|++++++|...||                 .+.||+||+++||+++++++++++|+++||+|+.||+++||.|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-----------------~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d   67 (367)
T COG4638           5 LPPPFYTDPELFQLELERIF-----------------YKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALAD   67 (367)
T ss_pred             CCCccccCHHHHHHHHHHhh-----------------hhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEec
Confidence            34568999999999999997                 4578999999999988999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccccC-CeeecCCCCeEEcCCCceeecCC--ccc----cccccccCCceEEcCeEEEcCCCCCCCC---
Q 017058          101 TCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTA---  170 (378)
Q Consensus       101 ~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~~G~~~~~P~--~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~---  170 (378)
                      +|||||++|+.|++.+ +.|+||||||+||++|+|+.+|.  ...    .+.+|++||+++++|+||||+++++++.   
T Consensus        68 ~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~  147 (367)
T COG4638          68 VCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAF  147 (367)
T ss_pred             cCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHh
Confidence            9999999999999988 89999999999999999999994  221    2357999999999999999999876431   


Q ss_pred             CCCCCC-CCCCceEe-eEEEEEEecChhhhhhcccc-cCCCCCcCcccccCCCCCc--c-eee--------eecCCCCCC
Q 017058          171 TIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWSVP--S-LVK--------FLTPASGLQ  236 (378)
Q Consensus       171 ~l~~~~-~~~~~~~~-~~~~~~~~~nwk~~~EN~~D-~~H~~~vH~~~~~~~~~~~--~-~~~--------~~~~~~~~~  236 (378)
                      ..|... ...++... .......++|||+++||++| +||++++|+++.+......  . ...        .........
T Consensus       148 ~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  227 (367)
T COG4638         148 LPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFFQ  227 (367)
T ss_pred             cccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCccC
Confidence            112222 22233322 45567888999999998887 9999999998776432110  0 000        000000000


Q ss_pred             c-eec--------CCC-----CcceecCCee-EEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeecc
Q 017058          237 G-YWD--------PYP-----IDMEFRPPCM-VLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLD  301 (378)
Q Consensus       237 ~-~~~--------~~~-----~~~~~~~P~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~  301 (378)
                      . .+.        ...     ..+.+..|+. +...                ............|+++++|.+.......
T Consensus       228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~  291 (367)
T COG4638         228 PLGSEASSYGFDGNYEVHVPGAYLLFLYPNSTVWNH----------------VTVDDVIVFFVQPIDEDETMVTLVWLVL  291 (367)
T ss_pred             CcchhhhccccccccccccCceeEEEEcCCchheee----------------ecccceeEEEEEecCCceeEEEeeeeec
Confidence            0 000        000     0011222321 1000                0111234556799999999987653321


Q ss_pred             chhhccCchhHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCC-cCCcccCCCHHHHHHHHHHHHHH
Q 017058          302 FASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALE  366 (378)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rr~l~~l~  366 (378)
                      .. .......+...+..+...++.||..|+|.||+++.+... .....+..|...+++++|+.+..
T Consensus       292 ~~-~~~~~~~~~~~~~~~~~~~~~qD~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (367)
T COG4638         292 PD-LVEGVDYFDKLIRRFRQEILDQDREILENQQPGRLSPALERGPYPIREDAGSVQFRRWLAERL  356 (367)
T ss_pred             cc-hhhHHHHHHHHHHHHhccCcHHHHHHHHHHhcccccccccCCCccccccchhhHHHHHHHHHH
Confidence            11 112223334556677788999999999999997666444 34467788999999999987554

>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit

Probab=100.00  E-value=1.6e-41  Score=337.40  Aligned_cols=179  Identities=20%  Similarity=0.315  Sum_probs=152.7

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      .+.++|||+++|++|+++||.+                 .|++||+++||+ +|+++++++++++|||+|+.||+++||.
T Consensus        16 v~~~~ytd~~if~~E~~~IF~~-----------------~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~   78 (438)
T TIGR03228        16 IARDMFTEPELFDLEMELIFEK-----------------NWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALV   78 (438)
T ss_pred             cChheECCHHHHHHHHHHHHhh-----------------CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEc
Confidence            6677999999999999999855                 456999999998 5999999999999999999999999999


Q ss_pred             cCCCCCCCCCCC-ccccCCeeecCCCCeEEcCCCceeecCCcc-------ccccccccCCceEEcCeEEEcCCCCCCCCC
Q 017058          100 NTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTAT  171 (378)
Q Consensus       100 n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~-------~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~  171 (378)
                      |+|||||++|+. +.++.+.|+||||||+|++||+|+++|...       ..+.+|++++|++.+|+|||+++++++ .+
T Consensus        79 N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~~  157 (438)
T TIGR03228        79 NACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-DS  157 (438)
T ss_pred             ccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-CC
Confidence            999999999997 888889999999999999999999998542       235678899999999999999987642 23


Q ss_pred             CCCCCCC--------------CCceEe-eEEEEEEecChhhhhhcccccCCCCCcCccccc
Q 017058          172 IPCLLPP--------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA  217 (378)
Q Consensus       172 l~~~~~~--------------~~~~~~-~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~  217 (378)
                      |+++++.              .++++. ....+++++|||+.+||++|+||++++|.++++
T Consensus       158 l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~  218 (438)
T TIGR03228       158 LEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA  218 (438)
T ss_pred             HHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence            5555431              124332 345678999999999999999999999988764

Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.

>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit

Probab=100.00  E-value=1.1e-41  Score=338.82  Aligned_cols=178  Identities=20%  Similarity=0.266  Sum_probs=149.3

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      ...+.|||+++|++|+++||.++                 |+.||++++|+ +|+++++++++++|||+|++||+++||.
T Consensus        16 ~~~~~Ytd~~~f~~E~~~IF~~~-----------------W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~   78 (433)
T TIGR03229        16 CKREMFTDPELFDLEMKHIFEGN-----------------WIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFI   78 (433)
T ss_pred             CChhhcCCHHHHHHHHHHHhhhC-----------------CEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEe
Confidence            66779999999999999998655                 55899999998 5899999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCccc----------cccccccCC-ceEEcCeEEEcCCCCC
Q 017058          100 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDEP  167 (378)
Q Consensus       100 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~~----------~~~~l~~~~-v~~~~G~I~v~~~~~~  167 (378)
                      |+|||||++|+.|. ++.+.|+||||||+||.||+|+++|....          ...+|.+++ ++..+|+|||++++++
T Consensus        79 N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~  158 (433)
T TIGR03229        79 NACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDV  158 (433)
T ss_pred             CcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCC
Confidence            99999999999874 56789999999999999999999987321          135799997 5666899999998765


Q ss_pred             CCCCCCCCCCC-------------CCceEe-eEEEEEEecChhhhhhcccccCCCCCcCccccc
Q 017058          168 PTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA  217 (378)
Q Consensus       168 ~~~~l~~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~  217 (378)
                      +  +|++++++             .++... ....+++++|||+++||++|+||++++|++++.
T Consensus       159 ~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~  220 (433)
T TIGR03229       159 L--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA  220 (433)
T ss_pred             C--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence            4  45555432             233322 345788999999999999999999999987654

Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).

>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b

Probab=100.00  E-value=3e-33  Score=235.68  Aligned_cols=123  Identities=65%  Similarity=1.381  Sum_probs=115.0

Q ss_pred             ccCCCCCccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCC
Q 017058           46 VSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHG  125 (378)
Q Consensus        46 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHg  125 (378)
                      ++|+++++...+++.|++||+++||++|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+|||||
T Consensus         3 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hg   82 (129)
T cd04337           3 VLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHG   82 (129)
T ss_pred             ccccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCC
Confidence            46888999999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             eEEcCCCceeecCCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058          126 WEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       126 w~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      |+||.+|+|+.+|..+..+.+|++||+++++|+|||+++++.|
T Consensus        83 w~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p  125 (129)
T cd04337          83 WEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP  125 (129)
T ss_pred             CEECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence            9999999999999765445689999999999999999987654

CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner

>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins

Probab=99.98  E-value=1.5e-32  Score=237.15  Aligned_cols=131  Identities=21%  Similarity=0.364  Sum_probs=115.5

Q ss_pred             cCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEcc
Q 017058           22 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQN  100 (378)
Q Consensus        22 ~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n  100 (378)
                      +.+.|||+++|+.|+++||+                .+.|+.||++++|+ +|+++++.++|++|+|+|+.+|+++|+.|
T Consensus         3 ~~~~y~d~~~~~~E~~~if~----------------~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n   66 (150)
T cd03545           3 PYKVFTDRAYFDREQERIFR----------------GKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVN   66 (150)
T ss_pred             ChhhccCHHHHHHHHHhhhC----------------CCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcc
Confidence            45689999999999999984                04456999999998 59999999999999999988999999999


Q ss_pred             CCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCcc-------------ccccccccCCceEEcCeEEEcCCCC
Q 017058          101 TCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       101 ~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~-------------~~~~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                      +|||||++|+.|. ++++.|+||||||+||++|+|+.+|..+             ....+|++|+|++.+|+|||+++++
T Consensus        67 ~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~  146 (150)
T cd03545          67 RCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDE  146 (150)
T ss_pred             cCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCC
Confidence            9999999999874 5578999999999999999999999642             1246899999999999999999876


Q ss_pred             CC
Q 017058          167 PP  168 (378)
Q Consensus       167 ~~  168 (378)
                      ++
T Consensus       147 ~~  148 (150)
T cd03545         147 VE  148 (150)
T ss_pred             CC
Confidence            53

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe

>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)

Probab=99.98  E-value=2.3e-32  Score=234.77  Aligned_cols=132  Identities=33%  Similarity=0.714  Sum_probs=118.5

Q ss_pred             ccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecC
Q 017058           44 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP  122 (378)
Q Consensus        44 ~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~Cp  122 (378)
                      +..+||-+++...+++.|++||.+++|+ +|+++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||
T Consensus         5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP   84 (144)
T cd03479           5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC   84 (144)
T ss_pred             eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence            4568999999999999999999999999 699999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEcCCCceeecCCccc-----cccccccCCceEEcCeEEEcCCCCCCCCCCCCC
Q 017058          123 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL  175 (378)
Q Consensus       123 yHgw~f~~~G~~~~~P~~~~-----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~~  175 (378)
                      ||||+||.+|+|+.+|..+.     ...+|++|+|++++|+|||++++..+++++|++
T Consensus        85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~  142 (144)
T cd03479          85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY  142 (144)
T ss_pred             CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence            99999999999999997542     246799999999999999999864433445543

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th

>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD)

Probab=99.97  E-value=8.8e-32  Score=224.15  Aligned_cols=109  Identities=33%  Similarity=0.739  Sum_probs=100.0

Q ss_pred             CceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecC
Q 017058           59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP  138 (378)
Q Consensus        59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P  138 (378)
                      ..||+|+.++||+ ++++.++++|+++||+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus         2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP   80 (123)
T cd03537           2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP   80 (123)
T ss_pred             CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence            5799999999996 678999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             Cccc---------cccccccCCceEEcCeEEEcCCCCCC
Q 017058          139 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       139 ~~~~---------~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      ..+.         ...++++|||+|++|+||||++++.+
T Consensus        81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~  119 (123)
T cd03537          81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP  119 (123)
T ss_pred             CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence            7432         24689999999999999999987654

PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.

>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane

Probab=99.97  E-value=1.3e-31  Score=227.37  Aligned_cols=117  Identities=29%  Similarity=0.813  Sum_probs=105.9

Q ss_pred             CccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCC
Q 017058           52 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD  131 (378)
Q Consensus        52 ~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~  131 (378)
                      .-...|++.|++||.++||++|..+.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||++
T Consensus         9 ~~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~   88 (134)
T cd04338           9 VAEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGE   88 (134)
T ss_pred             ccccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCC
Confidence            34456789999999999999888899999999999999989999999999999999999999999999999999999999


Q ss_pred             CceeecCCccc-----cccccccCCceEEcCeEEEcCCCCCC
Q 017058          132 GKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       132 G~~~~~P~~~~-----~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      |+|+.+|....     ...+|++|||++++|+|||++++.++
T Consensus        89 G~~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~  130 (134)
T cd04338          89 GKCVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP  130 (134)
T ss_pred             CCEEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence            99999997531     24569999999999999999987654

This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.

>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.97  E-value=9e-31  Score=225.12  Aligned_cols=128  Identities=20%  Similarity=0.379  Sum_probs=112.1

Q ss_pred             CCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCC
Q 017058           24 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTC  102 (378)
Q Consensus        24 ~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~C  102 (378)
                      +.|+|+++|+.|++++|.+                 .|+.||++++|+ +|+++++++.|++|+|+|+.+|+++|+.|+|
T Consensus         3 ~~y~~~~~~~~e~~~i~~~-----------------~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~C   65 (146)
T cd03538           3 DVYTDPEIFALEMERLFGN-----------------AWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRC   65 (146)
T ss_pred             ceEcCHHHHHHHHHHHhhc-----------------CCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccC
Confidence            4799999999999999855                 456999999998 6999999999999999999899999999999


Q ss_pred             CCCCCCCCC-cccc-CCeeecCCCCeEEcCCCceeecCCccc----------cccccccC-CceEEcCeEEEcCCCCCC
Q 017058          103 AHRACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       103 pHrg~~L~~-g~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~----------~~~~l~~~-~v~~~~G~I~v~~~~~~~  168 (378)
                      ||||++|+. |.++ ++.|+||||||+||.||+|+.+|..+.          ...+|+++ .|++++|+|||+++++++
T Consensus        66 pHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~  144 (146)
T cd03538          66 PHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP  144 (146)
T ss_pred             cCCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence            999999975 4444 568999999999999999999997441          24689999 689999999999987653

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.

>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)

Probab=99.97  E-value=2.8e-30  Score=213.57  Aligned_cols=109  Identities=25%  Similarity=0.638  Sum_probs=101.2

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCC
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS  139 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~  139 (378)
                      .|+.||.++||++|+++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus         1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~   80 (115)
T cd03531           1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY   80 (115)
T ss_pred             CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence            49999999999999999999999999999998999999999999999999999999999999999999999999999997


Q ss_pred             ccc--cccccccCCceEEcCeEEEcCCCCCC
Q 017058          140 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       140 ~~~--~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      .+.  ...++++|||++++|+|||+++++..
T Consensus        81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~  111 (115)
T cd03531          81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN  111 (115)
T ss_pred             ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence            542  24678999999999999999987653

The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.

>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1)

Probab=99.97  E-value=3e-30  Score=219.88  Aligned_cols=113  Identities=30%  Similarity=0.797  Sum_probs=102.4

Q ss_pred             cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeC-CCcEEEEccCCCCCCCCCCCcccc-CCeeecCCCCeEEcCCCc
Q 017058           56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK  133 (378)
Q Consensus        56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~-~G~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~  133 (378)
                      .+++.|++||.++||++|+++.+++.|++|+|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus        13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~   92 (138)
T cd03480          13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS   92 (138)
T ss_pred             CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence            467999999999999999999999999999999986 999999999999999999999875 579999999999999999


Q ss_pred             eeecCCccc-------cccccccCCceEEcCeEEEcCCCCCC
Q 017058          134 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       134 ~~~~P~~~~-------~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      |+.+|....       ...+|++|||++++|+|||++++.++
T Consensus        93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~  134 (138)
T cd03480          93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN  134 (138)
T ss_pred             EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence            999997531       24679999999999999999987554

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The

>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.97  E-value=6.3e-30  Score=211.90  Aligned_cols=110  Identities=35%  Similarity=0.819  Sum_probs=102.0

Q ss_pred             ccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceee
Q 017058           57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK  136 (378)
Q Consensus        57 ~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~  136 (378)
                      +++.|++||.++||+ |+++.+++.|.+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus         2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~   80 (116)
T cd03532           2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH   80 (116)
T ss_pred             cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence            578999999999998 8999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             cCCcc--ccccccccCCceEEcCeEEEcCCCCC
Q 017058          137 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEP  167 (378)
Q Consensus       137 ~P~~~--~~~~~l~~~~v~~~~G~I~v~~~~~~  167 (378)
                      +|..+  ....+|++|||++++|+|||++++++
T Consensus        81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~  113 (116)
T cd03532          81 MPGQERVPAKACVRSYPVVERDALIWIWMGDAA  113 (116)
T ss_pred             CCCCCCCCCccccccCCEEEECCEEEEEcCCcc
Confidence            99864  23567999999999999999997654

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad

>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.96  E-value=7.5e-30  Score=211.27  Aligned_cols=108  Identities=25%  Similarity=0.410  Sum_probs=99.9

Q ss_pred             ceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecC
Q 017058           60 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP  138 (378)
Q Consensus        60 ~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P  138 (378)
                      .|++||+++||+ +|++++++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|+|+.+|
T Consensus         1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P   80 (118)
T cd03541           1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT   80 (118)
T ss_pred             CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence            499999999998 5889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cccc------cccccccCCceEEcCeEEEcCCCCC
Q 017058          139 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP  167 (378)
Q Consensus       139 ~~~~------~~~~l~~~~v~~~~G~I~v~~~~~~  167 (378)
                      ....      ...+|.+++|++.+|||||+++++.
T Consensus        81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~~  115 (118)
T cd03541          81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRSL  115 (118)
T ss_pred             CcccccCCCHHHCCCceEeEEEECCEEEEEeCCCc
Confidence            8542      3578999999999999999997643

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).

>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.96  E-value=1.3e-29  Score=215.63  Aligned_cols=113  Identities=31%  Similarity=0.625  Sum_probs=100.4

Q ss_pred             cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcC-
Q 017058           54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-  130 (378)
Q Consensus        54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~-  130 (378)
                      ...|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||+ 
T Consensus         8 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~   86 (136)
T cd03548           8 KWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLD   86 (136)
T ss_pred             ccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCC
Confidence            346789999999999999999999999999999999 69999999999999999999985  56789999999999996 


Q ss_pred             CCceeecCCccc----cccccccCCceEEcCeEEEcCCCCC
Q 017058          131 DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP  167 (378)
Q Consensus       131 ~G~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~  167 (378)
                      +|+|+.+|..+.    ...+|++|||++++|+|||++++..
T Consensus        87 tG~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~~  127 (136)
T cd03548          87 DGKLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDGD  127 (136)
T ss_pred             CccEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCcc
Confidence            899998875432    1457999999999999999997643

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the

>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H)

Probab=99.96  E-value=1.1e-29  Score=213.80  Aligned_cols=108  Identities=22%  Similarity=0.416  Sum_probs=97.3

Q ss_pred             eEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecC
Q 017058           61 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  138 (378)
Q Consensus        61 W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P  138 (378)
                      |++||+++||+ +|+++++.+++.+|+|+|+.||+++||.|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|
T Consensus         1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p   80 (129)
T cd03539           1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP   80 (129)
T ss_pred             CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence            89999999998 5999999999999999999999999999999999999998764 557999999999999999999999


Q ss_pred             Ccc-----------------ccccccccCCceEEcCeEEEcCCCCCC
Q 017058          139 STQ-----------------LRNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       139 ~~~-----------------~~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      ..+                 ..+.+|++++|++++|+|||+++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~  127 (129)
T cd03539          81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE  127 (129)
T ss_pred             ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence            742                 124679999999999999999987654

S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.

>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO)

Probab=99.96  E-value=4e-29  Score=210.18  Aligned_cols=113  Identities=23%  Similarity=0.409  Sum_probs=99.4

Q ss_pred             cccCceEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCc
Q 017058           56 RLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGK  133 (378)
Q Consensus        56 ~~~~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~  133 (378)
                      ++.+.|+.||+++||++ |++..+++++++|+|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.+|+
T Consensus         4 i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G~   83 (128)
T cd03472           4 VFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAGN   83 (128)
T ss_pred             hhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCcC
Confidence            45778889999999985 777888899999999999999999999999999999999864 4568999999999999999


Q ss_pred             eeecCCccc--------cccccccCCceEEcCeEEEcCCCCCC
Q 017058          134 CEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       134 ~~~~P~~~~--------~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      |+.+|..+.        ...+|++++|.+++|+|||+++++++
T Consensus        84 ~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~  126 (128)
T cd03472          84 LVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP  126 (128)
T ss_pred             EEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence            999998532        13468999999999999999988754

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i

>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms

Probab=99.95  E-value=5.5e-28  Score=200.76  Aligned_cols=107  Identities=33%  Similarity=0.669  Sum_probs=99.3

Q ss_pred             eEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecC
Q 017058           61 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  138 (378)
Q Consensus        61 W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P  138 (378)
                      |++||.++||+ +|+.+.+++.+++++|+|+.+|+++|+.|+|||+|++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus         1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P   80 (118)
T cd03469           1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP   80 (118)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence            99999999999 8999999999999999998899999999999999999999998 889999999999999999999999


Q ss_pred             Cccc------cccccccCCceEEcCeEEEcCCCCC
Q 017058          139 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP  167 (378)
Q Consensus       139 ~~~~------~~~~l~~~~v~~~~G~I~v~~~~~~  167 (378)
                      ....      ...+|++|||++++|+|||+++++.
T Consensus        81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~  115 (118)
T cd03469          81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA  115 (118)
T ss_pred             cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence            8642      2467999999999999999998754

These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i

>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.95  E-value=9.6e-28  Score=200.72  Aligned_cols=110  Identities=21%  Similarity=0.486  Sum_probs=96.4

Q ss_pred             CceEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccC-CeeecCCCCeEEcCCCceee
Q 017058           59 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK  136 (378)
Q Consensus        59 ~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~~G~~~~  136 (378)
                      +.|+.||+++||++ |++..+++++++++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.||+|+.
T Consensus         1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~   80 (123)
T cd03535           1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG   80 (123)
T ss_pred             CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence            46999999999986 78888889999999999889999999999999999999987764 68999999999999999999


Q ss_pred             cCCccc--------cccccccCCc-eEEcCeEEEcCCCCCC
Q 017058          137 MPSTQL--------RNVKIKSLPC-FEQEGMIWIWPGDEPP  168 (378)
Q Consensus       137 ~P~~~~--------~~~~l~~~~v-~~~~G~I~v~~~~~~~  168 (378)
                      +|..+.        ...+|+++++ ++++|+|||+++++++
T Consensus        81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~  121 (123)
T cd03535          81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP  121 (123)
T ss_pred             CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence            997432        2367999986 5579999999987643

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1

>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO)

Probab=99.95  E-value=1.3e-27  Score=200.01  Aligned_cols=108  Identities=19%  Similarity=0.358  Sum_probs=96.1

Q ss_pred             eEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcccc-CCeeecCCCCeEEcCCCceeecC
Q 017058           61 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP  138 (378)
Q Consensus        61 W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~~~~~P  138 (378)
                      |+.||+++||++ |++..+++.+.+++|+|+.+|+++|+.|+|||||++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus         1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p   80 (123)
T cd03536           1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP   80 (123)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence            899999999986 8888889999999999988999999999999999999987654 36799999999999999999999


Q ss_pred             Cccc---------cccccccCCceEEcCeEEEcCCCCCC
Q 017058          139 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       139 ~~~~---------~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      ..+.         ...+|++|+|++++|+|||+++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~  119 (123)
T cd03536          81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP  119 (123)
T ss_pred             ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence            7431         23679999999999999999987643

DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.

>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.94  E-value=1.3e-26  Score=193.58  Aligned_cols=108  Identities=24%  Similarity=0.468  Sum_probs=94.1

Q ss_pred             eEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecC
Q 017058           61 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  138 (378)
Q Consensus        61 W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P  138 (378)
                      |+.||+++||++ |+++.+++.+++++|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus         1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p   80 (123)
T cd03542           1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK   80 (123)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence            889999999985 889999999999999999899999999999999999998754 456999999999999999999999


Q ss_pred             Cccc----------cccccccCC-ceEEcCeEEEcCCCCCC
Q 017058          139 STQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       139 ~~~~----------~~~~l~~~~-v~~~~G~I~v~~~~~~~  168 (378)
                      ....          ...+|.+++ +++++|||||+++++++
T Consensus        81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~  121 (123)
T cd03542          81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA  121 (123)
T ss_pred             cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence            6321          135788886 45668999999987654

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.

>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)

Probab=99.93  E-value=6.2e-26  Score=182.22  Aligned_cols=96  Identities=27%  Similarity=0.530  Sum_probs=90.6

Q ss_pred             eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCC
Q 017058           61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  139 (378)
Q Consensus        61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~  139 (378)
                      |++||.++||++|+.+.+++.|++++|+|. +|+++||.|+|||+|++|+.|.+.++.|+||||||+||+ +|+|+.+|.
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~   79 (98)
T cd03528           1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA   79 (98)
T ss_pred             CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence            899999999999999999999999999997 669999999999999999999888899999999999997 999999987


Q ss_pred             ccccccccccCCceEEcCeEEE
Q 017058          140 TQLRNVKIKSLPCFEQEGMIWI  161 (378)
Q Consensus       140 ~~~~~~~l~~~~v~~~~G~I~v  161 (378)
                      .    ..|++||+++++|.|||
T Consensus        80 ~----~~L~~~~v~~~~g~v~v   97 (98)
T cd03528          80 T----EPLKTYPVKVEDGDVYV   97 (98)
T ss_pred             C----CCcceEeEEEECCEEEE
Confidence            4    36999999999999998

The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in

>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain

Probab=99.93  E-value=1.1e-25  Score=180.84  Aligned_cols=97  Identities=21%  Similarity=0.459  Sum_probs=89.2

Q ss_pred             eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCC
Q 017058           61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  139 (378)
Q Consensus        61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~  139 (378)
                      |+.||.++||++|+.+.+++.|++++|+|..+|+++|+.|+|||||++|+.|.+.++.|+||||||+||+ +|.+.. |.
T Consensus         1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~   79 (98)
T cd03530           1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD   79 (98)
T ss_pred             CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence            8999999999999899999999999999988899999999999999999999999999999999999996 888764 43


Q ss_pred             ccccccccccCCceEEcCeEEEc
Q 017058          140 TQLRNVKIKSLPCFEQEGMIWIW  162 (378)
Q Consensus       140 ~~~~~~~l~~~~v~~~~G~I~v~  162 (378)
                      .    .+|++||+++++|.|||.
T Consensus        80 ~----~~l~~y~v~v~~g~v~v~   98 (98)
T cd03530          80 E----GCVRTFPVKVEDGRVYLG   98 (98)
T ss_pred             C----CccceEeEEEECCEEEEC
Confidence            2    369999999999999984

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.

>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.93  E-value=1.7e-25  Score=182.95  Aligned_cols=102  Identities=21%  Similarity=0.352  Sum_probs=92.0

Q ss_pred             eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCC
Q 017058           61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  139 (378)
Q Consensus        61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~  139 (378)
                      |+.||.++||++|+.+.+++.+.+++|+|..+|+++|+.|+|||||++|+.|..+++.|+||||||+||+ +|.|.. |.
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~   79 (108)
T cd03474           1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR   79 (108)
T ss_pred             CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence            8899999999999999999999989999989999999999999999999999988889999999999996 677664 32


Q ss_pred             ccccccccccCCceEEcCeEEEcCCCCC
Q 017058          140 TQLRNVKIKSLPCFEQEGMIWIWPGDEP  167 (378)
Q Consensus       140 ~~~~~~~l~~~~v~~~~G~I~v~~~~~~  167 (378)
                          ..+|++|||++++|.|||+++..+
T Consensus        80 ----~~~L~~~~v~v~~g~v~v~~~~~~  103 (108)
T cd03474          80 ----DCRLARYPVKVEGGDILVDTEGVL  103 (108)
T ss_pred             ----CCccceEeEEEECCEEEEeCCCcC
Confidence                347999999999999999997544

T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.

>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily

Probab=99.92  E-value=7.9e-25  Score=176.86  Aligned_cols=100  Identities=20%  Similarity=0.369  Sum_probs=93.0

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecC
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP  138 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P  138 (378)
                      .|+.+|..+||++|..+.+++.|.+++|+|..+|+++|++|+|||+|++|+.|.+.++.|+||+|||+||+ ||+|+..|
T Consensus         1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p   80 (101)
T TIGR02377         1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP   80 (101)
T ss_pred             CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence            39999999999999999999999999999977899999999999999999999999999999999999995 99999988


Q ss_pred             CccccccccccCCceEEcCeEEEcC
Q 017058          139 STQLRNVKIKSLPCFEQEGMIWIWP  163 (378)
Q Consensus       139 ~~~~~~~~l~~~~v~~~~G~I~v~~  163 (378)
                      ...    .|++|||++++|.|||.+
T Consensus        81 ~~~----~l~~y~v~v~~g~v~V~~  101 (101)
T TIGR02377        81 VCV----NLKTYPVKVVDGAVYVDI  101 (101)
T ss_pred             ccC----CcceEeEEEECCEEEEeC
Confidence            643    599999999999999953

This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].

>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium

Probab=99.92  E-value=1e-24  Score=176.82  Aligned_cols=97  Identities=23%  Similarity=0.297  Sum_probs=88.1

Q ss_pred             eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCC-CCCcccc----CCeeecCCCCeEEc-CCCce
Q 017058           61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC  134 (378)
Q Consensus        61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~-L~~g~~~----~~~l~CpyHgw~f~-~~G~~  134 (378)
                      |+.||.++||++|+.+.+++.|++++|+|..+|+++|+.|+|||++++ |+.|.+.    ++.|+||||||+|| .+|+|
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~   80 (103)
T cd03529           1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC   80 (103)
T ss_pred             CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence            899999999999999999999999999998777999999999999997 7888764    34899999999999 59999


Q ss_pred             eecCCccccccccccCCceEEcCeEEEc
Q 017058          135 EKMPSTQLRNVKIKSLPCFEQEGMIWIW  162 (378)
Q Consensus       135 ~~~P~~~~~~~~l~~~~v~~~~G~I~v~  162 (378)
                      +..|..     +|++|||++++|.|||.
T Consensus        81 ~~~p~~-----~l~~y~v~~~~g~v~v~  103 (103)
T cd03529          81 LEDEDV-----SVATFPVRVEDGEVYVK  103 (103)
T ss_pred             cCCCCc-----cEeeEeEEEECCEEEEC
Confidence            998853     69999999999999983

Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.

>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit

Probab=99.91  E-value=1.3e-24  Score=176.97  Aligned_cols=99  Identities=23%  Similarity=0.412  Sum_probs=90.4

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCC-CCCCCCccccCCe----eecCCCCeEEcC-CCc
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK  133 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHr-g~~L~~g~~~~~~----l~CpyHgw~f~~-~G~  133 (378)
                      .|++||.++||++|+.+.+++.|.+++|+|..+|+++|+.|+|||+ +.+|+.|.+.++.    |+||||||+||+ +|+
T Consensus         1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~   80 (105)
T TIGR02378         1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR   80 (105)
T ss_pred             CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence            4999999999999999999999999999998789999999999999 8999999876665    999999999996 999


Q ss_pred             eeecCCccccccccccCCceEEcCeEEEcC
Q 017058          134 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP  163 (378)
Q Consensus       134 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~  163 (378)
                      |+..|.     .+|++||+++++|.|||.+
T Consensus        81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~  105 (105)
T TIGR02378        81 CLEDDS-----GSVRTYEVRVEDGRVYVAL  105 (105)
T ss_pred             ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence            998764     3699999999999999964

This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.

>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox)

Probab=99.91  E-value=3.2e-24  Score=171.34  Aligned_cols=93  Identities=26%  Similarity=0.502  Sum_probs=87.2

Q ss_pred             EEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCCcc
Q 017058           63 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ  141 (378)
Q Consensus        63 ~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~~~  141 (378)
                      .||.++||++|+.+.+++.|.+++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||+ +|+|+..|...
T Consensus         2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~   80 (95)
T cd03478           2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALD   80 (95)
T ss_pred             ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCccC
Confidence            3789999999999999999999999997 899999999999999999999999999999999999996 99999999753


Q ss_pred             ccccccccCCceEEcCeEE
Q 017058          142 LRNVKIKSLPCFEQEGMIW  160 (378)
Q Consensus       142 ~~~~~l~~~~v~~~~G~I~  160 (378)
                          .|++||+++++|.||
T Consensus        81 ----~l~~~~v~~~~g~i~   95 (95)
T cd03478          81 ----SLPCYEVEVEDGRVY   95 (95)
T ss_pred             ----CcceEEEEEECCEEC
Confidence                599999999999997

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.

>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional

Probab=99.90  E-value=6.4e-24  Score=173.07  Aligned_cols=100  Identities=20%  Similarity=0.364  Sum_probs=90.7

Q ss_pred             eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccC-CeeecCCCCeEEcC-CCceeecC
Q 017058           61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKMP  138 (378)
Q Consensus        61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~-~G~~~~~P  138 (378)
                      |+.||..+||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||. +|+|+..|
T Consensus         3 ~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p   80 (106)
T PRK09965          3 RIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLP   80 (106)
T ss_pred             cEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCC
Confidence            889999999999988888876 88999985 9999999999999999999999988 79999999999996 99999887


Q ss_pred             CccccccccccCCceEEcCeEEEcCCCC
Q 017058          139 STQLRNVKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       139 ~~~~~~~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                      ..    .+|++|++++++|.|||.+...
T Consensus        81 ~~----~~l~~y~v~v~~g~v~v~~~~~  104 (106)
T PRK09965         81 AT----DPLRTYPVHVEGGDIFIDLPEA  104 (106)
T ss_pred             CC----CCcceEeEEEECCEEEEEccCC
Confidence            53    3699999999999999988643

>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A

Probab=99.88  E-value=2.8e-22  Score=162.31  Aligned_cols=98  Identities=28%  Similarity=0.612  Sum_probs=91.5

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCC-CCCCCCCccccCC----eeecCCCCeEEcC-CCc
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK  133 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpH-rg~~L~~g~~~~~----~l~CpyHgw~f~~-~G~  133 (378)
                      .|..||..+||++|..+.+.+.|.+|+|||..+|+++|++|+||| ++++|+.|.+.+.    .+.||.|+|.||+ +|+
T Consensus         1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~   80 (104)
T PF13806_consen    1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE   80 (104)
T ss_dssp             SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred             CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence            599999999999999999999999999999889999999999999 8999999998876    9999999999996 999


Q ss_pred             eeecCCccccccccccCCceEEcCeEEEc
Q 017058          134 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW  162 (378)
Q Consensus       134 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~  162 (378)
                      |+..|.     .+|++|||++++|.|||.
T Consensus        81 ~~~~~~-----~~l~~ypvrv~~g~V~V~  104 (104)
T PF13806_consen   81 CLEDPD-----VSLRTYPVRVEDGQVYVE  104 (104)
T ss_dssp             ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred             cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence            998765     369999999999999984

>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types

Probab=99.88  E-value=1.9e-22  Score=161.51  Aligned_cols=93  Identities=31%  Similarity=0.661  Sum_probs=79.7

Q ss_pred             ceEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcCC-Ccee
Q 017058           60 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE  135 (378)
Q Consensus        60 ~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~~-G~~~  135 (378)
                      .|++||+++||++ |+...+.+ +...++++..+|+++|+.|+|||+|++|+.|.  .+++.|+||||||+||.+ |+|+
T Consensus         1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~   79 (97)
T PF00355_consen    1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV   79 (97)
T ss_dssp             SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred             CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence            5999999999997 88889999 55555556789999999999999999999994  456899999999999975 9999


Q ss_pred             ecCCccccccccccCCceEEcC
Q 017058          136 KMPSTQLRNVKIKSLPCFEQEG  157 (378)
Q Consensus       136 ~~P~~~~~~~~l~~~~v~~~~G  157 (378)
                      .+|...    .++.|||+++++
T Consensus        80 ~~p~~~----~l~~~~v~ve~~   97 (97)
T PF00355_consen   80 GGPAPR----PLPLYPVKVEGD   97 (97)
T ss_dssp             ESTTCS----BSTEEEEEEETT
T ss_pred             cCCCCC----CcCCCCeEEeCC
Confidence            999864    589999988763

Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....

>PRK09511 nirD nitrite reductase small subunit; Provisional

Probab=99.87  E-value=9.1e-22  Score=160.63  Aligned_cols=98  Identities=20%  Similarity=0.246  Sum_probs=87.7

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEe-CCCcEEEEccCCCCCCCC-CCCccccC--C--eeecCCCCeEEcC-CC
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE--G--RIQCPYHGWEYST-DG  132 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~-~~G~~~a~~n~CpHrg~~-L~~g~~~~--~--~l~CpyHgw~f~~-~G  132 (378)
                      .|..||..+||++|+.+.+.+.|++|+|+|. .+|+++|++|+|||.+++ |+.|.+.+  +  .|+||+|||+||+ +|
T Consensus         3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG   82 (108)
T PRK09511          3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG   82 (108)
T ss_pred             cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence            4999999999999999999999999999995 589999999999999985 99998742  2  4999999999995 99


Q ss_pred             ceeecCCccccccccccCCceEEcCeEEEc
Q 017058          133 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW  162 (378)
Q Consensus       133 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~  162 (378)
                      +|+..|..     .|++|||++++|.|||.
T Consensus        83 ~~~~~~~~-----~l~typV~ve~g~V~v~  107 (108)
T PRK09511         83 LCMEDEQF-----SVKHYDARVKDGVVQLR  107 (108)
T ss_pred             ccCCCCCc-----cEeeEeEEEECCEEEEe
Confidence            99986653     69999999999999984

>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes

Probab=99.86  E-value=1.6e-21  Score=156.57  Aligned_cols=95  Identities=25%  Similarity=0.472  Sum_probs=87.5

Q ss_pred             eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCC
Q 017058           61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  139 (378)
Q Consensus        61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~  139 (378)
                      |++++..++|++|+...+.+.+.+++|+|..+|+++|+.|+|||+|++|..|.+.++.|+||+|||+||+ ||+|+..|.
T Consensus         1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~   80 (98)
T cd03467           1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA   80 (98)
T ss_pred             CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence            8899999999999999999999999999988899999999999999999999888999999999999997 999999986


Q ss_pred             ccccccccccCCceEEc-CeE
Q 017058          140 TQLRNVKIKSLPCFEQE-GMI  159 (378)
Q Consensus       140 ~~~~~~~l~~~~v~~~~-G~I  159 (378)
                      .    ..|++|++++.+ +.|
T Consensus        81 ~----~~l~~~~v~~~~~~~~   97 (98)
T cd03467          81 P----RPLPKYPVKVEGDGVV   97 (98)
T ss_pred             C----CCcCEEEEEEeCCceE
Confidence            3    469999999984 444

The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.

>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]

Probab=99.85  E-value=3.1e-21  Score=156.67  Aligned_cols=101  Identities=23%  Similarity=0.432  Sum_probs=90.2

Q ss_pred             CceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCC-eeecCCCCeEEcC-CCceee
Q 017058           59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYST-DGKCEK  136 (378)
Q Consensus        59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~-~l~CpyHgw~f~~-~G~~~~  136 (378)
                      ..|+.+|..++|+++..+.+.+.+..+++++..+|+++|+.|+|||.+++|+.|.+.+. .|+||.|+|.||+ ||+|+.
T Consensus         3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~   82 (106)
T COG2146           3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE   82 (106)
T ss_pred             CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence            47999999999999888888884436777777899999999999999999999999986 5999999999995 999999


Q ss_pred             cCCccccccccccCCceEEcCeEEEcC
Q 017058          137 MPSTQLRNVKIKSLPCFEQEGMIWIWP  163 (378)
Q Consensus       137 ~P~~~~~~~~l~~~~v~~~~G~I~v~~  163 (378)
                      .|...    .|+.||+++.+|.|||.+
T Consensus        83 ~p~~~----~l~~y~vrve~g~v~v~~  105 (106)
T COG2146          83 PPAGK----TLKTYPVRVEGGRVFVDL  105 (106)
T ss_pred             CCCCC----ceeEEeEEEECCEEEEec
Confidence            99863    199999999999999976

>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain

Probab=99.85  E-value=2.1e-21  Score=153.51  Aligned_cols=86  Identities=24%  Similarity=0.403  Sum_probs=78.0

Q ss_pred             EEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCcccc
Q 017058           64 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR  143 (378)
Q Consensus        64 v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~  143 (378)
                      +|.++||++|+.+.+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.. ++.|+||||||+||.||+|+..|...  
T Consensus         2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~~--   78 (91)
T cd03477           2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAVS--   78 (91)
T ss_pred             ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCCC--
Confidence            578899999999999999999999999899999999999999999998865 56999999999999999999999753  


Q ss_pred             ccccccCCceE
Q 017058          144 NVKIKSLPCFE  154 (378)
Q Consensus       144 ~~~l~~~~v~~  154 (378)
                        .|++|++..
T Consensus        79 --~l~~y~v~~   87 (91)
T cd03477          79 --GLKPADDAP   87 (91)
T ss_pred             --CCCeeEeec
Confidence              588888764

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.

>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate

Probab=99.80  E-value=2.1e-19  Score=150.26  Aligned_cols=95  Identities=21%  Similarity=0.326  Sum_probs=85.1

Q ss_pred             EEEecCCCCCCCeEEEEECC--eeEEEEEeC---------CCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-
Q 017058           63 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-  130 (378)
Q Consensus        63 ~v~~~~el~~g~~~~~~~~g--~~vvv~R~~---------~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-  130 (378)
                      .||..++|++|+.+.+++.+  .+++|+|..         +|+++|++|+|||+|++|+.+. +++.|+||+|||+||. 
T Consensus         5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~   83 (126)
T cd03476           5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA   83 (126)
T ss_pred             EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence            68999999999999999887  889999964         7999999999999999999977 7789999999999996 


Q ss_pred             -CCceeecCCccccccccccCCceEE--cCeEEEc
Q 017058          131 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW  162 (378)
Q Consensus       131 -~G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~  162 (378)
                       +|+|+..|..    ..|+.||++++  +|.|||.
T Consensus        84 tgG~~~~gPa~----~~L~~ypv~ve~~~g~V~~~  114 (126)
T cd03476          84 RGGQMVSGQAT----QNLPQIVLEYDEASGDIYAV  114 (126)
T ss_pred             CCCeEEcCCCC----CCCCeEEEEEECCCCEEEEE
Confidence             5799988864    36999999999  9999984

It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.

>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases

Probab=99.78  E-value=3.7e-18  Score=152.41  Aligned_cols=171  Identities=20%  Similarity=0.215  Sum_probs=110.8

Q ss_pred             EEEEecChhhhhhcccccCCCCCcCcccccCCCCC---cceeeeecCCCCC-CceecC--------C------CCcceec
Q 017058          188 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---PSLVKFLTPASGL-QGYWDP--------Y------PIDMEFR  249 (378)
Q Consensus       188 ~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~--------~------~~~~~~~  249 (378)
                      .++++|||++++||++|++|++|||+++++.....   +...++.....+. ...+..        .      .....|.
T Consensus         5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (196)
T cd08878           5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEFL   84 (196)
T ss_pred             cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEEE
Confidence            46789999999999999999999999999864321   1111111111010 000000        0      0124578


Q ss_pred             CCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhc--cCchhHHHHHHHHHhHHHhhh
Q 017058          250 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL--KHVPFMQYLWRHFAEQVLNED  327 (378)
Q Consensus       250 ~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~V~~ED  327 (378)
                      +|+++...+....++.      ......+..++.++|+++++|++++.+++++....  ...+.+...+..+..+|+.||
T Consensus        85 ~P~~~~~~~~~~~~~~------~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~eD  158 (196)
T cd08878          85 LPNVLLIDPGVAPAGT------REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNED  158 (196)
T ss_pred             CCEEEEEecccccCCc------CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHHHHHhhhhchhH
Confidence            8987765544332221      01112455678889999999999998887764320  011233344445778999999


Q ss_pred             HHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHH
Q 017058          328 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL  365 (378)
Q Consensus       328 ~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l  365 (378)
                      +.|+|+||+++... ...+.+..+|+++++||||++++
T Consensus       159 ~~i~e~q~~~~~~~-~~~~~l~~~D~~~~~~Rr~l~~~  195 (196)
T cd08878         159 KEAVEAQQRIIDRD-PTREHLGLSDKGIVRFRRLLRRL  195 (196)
T ss_pred             HHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHh
Confidence            99999999998764 23456677999999999999875

C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an

>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.77  E-value=1.8e-18  Score=143.71  Aligned_cols=90  Identities=17%  Similarity=0.345  Sum_probs=74.5

Q ss_pred             CCCCeEEEE-ECCeeEEEEEeCCCcE--EEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCcccccccc
Q 017058           71 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI  147 (378)
Q Consensus        71 ~~g~~~~~~-~~g~~vvv~R~~~G~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l  147 (378)
                      .+|++..+. ..+.+.++.+..+|++  +|++|+|||+|++|..+.. ++.|+||+|||+||.+|+++..|..    ..|
T Consensus        21 ~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa~----~~L   95 (126)
T cd03471          21 NPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPAP----LSL   95 (126)
T ss_pred             CCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCCC----CCC
Confidence            367777776 4555555556679977  7999999999999998754 5799999999999999999988864    369


Q ss_pred             ccCCceEEcCeEEEcCCC
Q 017058          148 KSLPCFEQEGMIWIWPGD  165 (378)
Q Consensus       148 ~~~~v~~~~G~I~v~~~~  165 (378)
                      +.|+|++++|.|||.+..
T Consensus        96 ~~y~V~vedg~I~V~~~~  113 (126)
T cd03471          96 ALVHATVDDDKVVLSPWT  113 (126)
T ss_pred             ceEeEEEECCEEEEEECc
Confidence            999999999999997544

The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.

>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit

Probab=99.72  E-value=2.9e-17  Score=137.71  Aligned_cols=94  Identities=21%  Similarity=0.355  Sum_probs=81.4

Q ss_pred             EEEecCCCCCCCeEEEEECC--eeEEEEEe---------CCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCC
Q 017058           63 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD  131 (378)
Q Consensus        63 ~v~~~~el~~g~~~~~~~~g--~~vvv~R~---------~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~  131 (378)
                      .||..+||++|+.+.+.+.+  .+++|+|.         .+|+++|++|+|||.|++|+.+. .+..|.||+|||+||.+
T Consensus         8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~   86 (129)
T TIGR02694         8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE   86 (129)
T ss_pred             EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence            68999999999999999765  47888883         58999999999999999999875 67899999999999974


Q ss_pred             --CceeecCCccccccccccCCceEE-cCeEEE
Q 017058          132 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI  161 (378)
Q Consensus       132 --G~~~~~P~~~~~~~~l~~~~v~~~-~G~I~v  161 (378)
                        |+|+..|..    ..|++||+++. +|.||.
T Consensus        87 tgG~~~~gP~~----~~L~~y~v~v~~~G~V~~  115 (129)
T TIGR02694        87 KGGQQVWGQAT----QNLPQIVLRVADNGDIFA  115 (129)
T ss_pred             CCCcEECCCCC----CCCCeeEEEEECCCeEEE
Confidence              699988864    36999999997 599994

This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.

>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.71  E-value=2.8e-17  Score=131.57  Aligned_cols=72  Identities=15%  Similarity=0.335  Sum_probs=65.9

Q ss_pred             cCCCCCCCeEEEEE-CCeeEEEEEeCCCcEEEEccCCCCCCCCCCCc--cccCCeeecCCCCeEEcC-CCceeecCC
Q 017058           67 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEKMPS  139 (378)
Q Consensus        67 ~~el~~g~~~~~~~-~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g--~~~~~~l~CpyHgw~f~~-~G~~~~~P~  139 (378)
                      ..+|++|..+.+.+ .|.+|+|+|. +|+++|+.|+|||++++|+.|  .++++.|+||+|||+||+ +|+++..|.
T Consensus        14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~   89 (107)
T cd03473          14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD   89 (107)
T ss_pred             HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence            47889999999999 9999999995 899999999999999999994  588899999999999995 999998665

CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.

>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

Probab=99.69  E-value=4.1e-16  Score=138.26  Aligned_cols=161  Identities=20%  Similarity=0.192  Sum_probs=99.5

Q ss_pred             EEEEEecChhhhhhcccccCCCCCcCcccccCCC-----CCcceeeeecC----CCCCCceec-------------CCCC
Q 017058          187 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW-----SVPSLVKFLTP----ASGLQGYWD-------------PYPI  244 (378)
Q Consensus       187 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~-------------~~~~  244 (378)
                      ..++++||||+++||++|+||++++|+++++...     ..+. .....+    .......|.             ....
T Consensus         3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (188)
T cd00680           3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDH-YRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGY   81 (188)
T ss_pred             eEEEeccCceEehhhccccccccccChhhhccccccCcccCCc-eEEEeccCCCCChhhcccchhhhcccccccccccCe
Confidence            4578999999999999999999999999987421     1111 111110    000000000             0011


Q ss_pred             cceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhh-ccCchhHHHHHHHHHhHH
Q 017058          245 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-LKHVPFMQYLWRHFAEQV  323 (378)
Q Consensus       245 ~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V  323 (378)
                      ...+.+||+++....                 ....++.+.|+++++|++.+.++...... ..........+..+...|
T Consensus        82 ~~~~~fPn~~~~~~~-----------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  144 (188)
T cd00680          82 LYLYLFPNLMIGLYP-----------------DSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQV  144 (188)
T ss_pred             EEEEECCcEeeeecC-----------------CEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHH
Confidence            245578887754421                 23456678999999999999887653321 011111111222356889


Q ss_pred             HhhhHHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHH
Q 017058          324 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL  365 (378)
Q Consensus       324 ~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l  365 (378)
                      +.||+.++|+||+++.++.............+..|++|+++.
T Consensus       145 ~~ED~~~~e~~Q~gl~s~~~~~~~l~~~E~~i~~f~~~~~~~  186 (188)
T cd00680         145 LDEDIELCERIQRGLRSGAFRGGPLSPLEEGIRHFHRWLRRA  186 (188)
T ss_pred             HHHHHHHHHHHhccccCCcCCCCCCCcccccHHHHHHHHHHh
Confidence            999999999999999987543333334456888888987754

C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te

>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.68  E-value=2.2e-16  Score=132.06  Aligned_cols=92  Identities=21%  Similarity=0.324  Sum_probs=81.2

Q ss_pred             ecCCCCCCCeEEEEECCeeEEEEEeC----------------------------CCcEEEEccCCCCCCCCCCCccccCC
Q 017058           66 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG  117 (378)
Q Consensus        66 ~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------~G~~~a~~n~CpHrg~~L~~g~~~~~  117 (378)
                      ..++|++|+.+++...|.+|+|+|..                            +|+++|+.++|||.||.+..+.+.++
T Consensus         5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~   84 (126)
T cd03470           5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG   84 (126)
T ss_pred             EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence            56789999999999999999999952                            67999999999999999988776788


Q ss_pred             eeecCCCCeEEcCCCceeecCCccccccccccCCceEEc-CeEEE
Q 017058          118 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI  161 (378)
Q Consensus       118 ~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~-G~I~v  161 (378)
                      .+.||+|||+||.+|+.+..|+.    ..|+.||++..+ +.|+|
T Consensus        85 ~~~CPcHgs~Fdl~G~~~~gPa~----~~L~~~p~~~~~~~~l~i  125 (126)
T cd03470          85 GFFCPCHGSHYDASGRIRKGPAP----LNLEVPPYKFLSDTTIVI  125 (126)
T ss_pred             EEEecCcCCEECCCCeEecCCCC----CCCCeeeEEEecCCEEEe
Confidence            99999999999999999998874    469999998776 67765

The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.

>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

Probab=99.62  E-value=1.2e-14  Score=130.46  Aligned_cols=163  Identities=11%  Similarity=0.050  Sum_probs=97.0

Q ss_pred             EEEEEEecChhhhhhcccccCCCCCcCcccccCCCCC----------cceeeeecCCC---CCCceecC---------CC
Q 017058          186 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV----------PSLVKFLTPAS---GLQGYWDP---------YP  243 (378)
Q Consensus       186 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~---------~~  243 (378)
                      ...++++||||+++||++|+||++++|++|+......          +.......+..   ........         ..
T Consensus         3 ~~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (190)
T cd08885           3 REEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRR   82 (190)
T ss_pred             eeeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcc
Confidence            3467899999999999999999999999988642110          00000001100   00000000         00


Q ss_pred             CcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhc-cCchhHHHHHHHHHhH
Q 017058          244 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL-KHVPFMQYLWRHFAEQ  322 (378)
Q Consensus       244 ~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  322 (378)
                      ....+.+||+++....                 ....+..+.|+++++|++.+.++....... .........+..+...
T Consensus        83 ~~~~~iFPN~~i~~~~-----------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (190)
T cd08885          83 LVLFAIFPTHLLALTP-----------------DYVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDA  145 (190)
T ss_pred             eEEEEECCcEEEEecC-----------------CeEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHH
Confidence            1133467887765421                 123455678999999999887664322110 0111112222335578


Q ss_pred             HHhhhHHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHH
Q 017058          323 VLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL  365 (378)
Q Consensus       323 V~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l  365 (378)
                      |+.||..+||++|++|.++..........+..+..|.+|+.+.
T Consensus       146 v~~ED~~~~e~~Q~Gl~S~~~~~g~l~~~E~~i~~fh~~l~~~  188 (190)
T cd08885         146 INDEDRLVVEGVQRGLGSRFAVPGRLSHLERPIWQFQRYLASR  188 (190)
T ss_pred             HHHHHHHHHHHhcccccCCCCCCCCCCcccccHHHHHHHHHHH
Confidence            9999999999999999986543322234577888899997753

C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and

>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

Probab=99.58  E-value=2.2e-14  Score=127.91  Aligned_cols=161  Identities=19%  Similarity=0.201  Sum_probs=97.8

Q ss_pred             EEEEEecChhhhhhcccccCCCCCcCcccccCCCCCc-ceeeeecCCCC--------------CCceecCC-CC-cceec
Q 017058          187 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP-SLVKFLTPASG--------------LQGYWDPY-PI-DMEFR  249 (378)
Q Consensus       187 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~-~~-~~~~~  249 (378)
                      ..++++||||+++||++|+||++++|+++++...... ...........              ...-|... .. ...+.
T Consensus         4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (185)
T cd08887           4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL   83 (185)
T ss_pred             eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence            4678999999999999999999999999986421101 01011000000              00001000 00 12345


Q ss_pred             CCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCc-hhHHHHHHHHH-hHHHhhh
Q 017058          250 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV-PFMQYLWRHFA-EQVLNED  327 (378)
Q Consensus       250 ~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~V~~ED  327 (378)
                      +||+++....                 ....+..+.|.++++|.+.+.++.......... ....... .+. ..|..||
T Consensus        84 FPN~~i~~~~-----------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ED  145 (185)
T cd08887          84 FPNVSLLVQP-----------------DHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNW-DFLMAVVLDED  145 (185)
T ss_pred             CCceEEEecC-----------------CeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHH-HHHHhhhHHHH
Confidence            7887765421                 234456679999999999887764322111111 1111122 233 7899999


Q ss_pred             HHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHH
Q 017058          328 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL  365 (378)
Q Consensus       328 ~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l  365 (378)
                      ..++|.+|++|.++...+......+..+..|.+|+++.
T Consensus       146 ~~~~e~~Q~Gl~s~~~~~~~l~~~E~~i~~fh~~~~~~  183 (185)
T cd08887         146 FEVAEEIQRGLASGANDHLTFGRNESALQHFHRWLERA  183 (185)
T ss_pred             HHHHHHHhhhhhcCCCCceEeecCCHHHHHHHHHHHHH
Confidence            99999999999987654434446677888999998754

C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and

>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases

Probab=99.58  E-value=3.9e-14  Score=125.69  Aligned_cols=160  Identities=14%  Similarity=0.151  Sum_probs=96.3

Q ss_pred             EEEEEEecChhhhhhcccccCCCCCcCcccccCCCCCcceeee-------ecCCC-CCCceecCCC--CcceecCCeeEE
Q 017058          186 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKF-------LTPAS-GLQGYWDPYP--IDMEFRPPCMVL  255 (378)
Q Consensus       186 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~--~~~~~~~P~~~~  255 (378)
                      ...+++++|||+++||++|+||++++|++++............       ..+.. .....+....  ....+.+||+++
T Consensus         3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i   82 (175)
T cd08883           3 RREYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLML   82 (175)
T ss_pred             cEEeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEee
Confidence            3467889999999999999999999999988542110000000       00000 0011111111  113456898876


Q ss_pred             EeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHHhhhHHHHHHHH
Q 017058          256 STIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQ  335 (378)
Q Consensus       256 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ED~~ile~qq  335 (378)
                      +...                 ....++.+.|+++++|++.+.++..... ..........+ . .+.|+.||..|+|.+|
T Consensus        83 ~~~~-----------------~~~~~~~~~P~~p~~t~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~v~~ED~~i~e~vQ  142 (175)
T cd08883          83 NRYP-----------------PGMDVNVVLPLGPERCKVVFDYFVDDSD-GSDEAFIAESI-E-SDRVQKEDIEICESVQ  142 (175)
T ss_pred             eecC-----------------CeEEEEEEEeCCCCcEEEEEEEEEeccc-cchhHHHHHHH-H-HHHHHHHHHHHHHHHh
Confidence            5421                 1233455789999999998877643221 01111112222 2 5789999999999999


Q ss_pred             hhccCCCCc-CCcccCCCHHHHHHHHHHHHH
Q 017058          336 ERMNNGANV-WNLPVGYDKLGVRYRLWRDAL  365 (378)
Q Consensus       336 ~~l~~g~~~-~~l~~~aD~~~v~~Rr~l~~l  365 (378)
                      ++|.++... ..+....+..+..|++|+++.
T Consensus       143 ~Gl~S~~~~~G~l~~~~E~~v~~Fh~~l~~~  173 (175)
T cd08883         143 RGLESGAYDPGRFSPKRENGVHHFHRLLAQA  173 (175)
T ss_pred             hhhcCCCCCCCCCCCccchHHHHHHHHHHHh
Confidence            999987542 222223467888899998754

C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-

>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional

Probab=99.57  E-value=1.2e-14  Score=128.86  Aligned_cols=88  Identities=19%  Similarity=0.377  Sum_probs=73.3

Q ss_pred             CCCCeEEEE-ECCeeEEEEEeCCCcE--EEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCcccccccc
Q 017058           71 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI  147 (378)
Q Consensus        71 ~~g~~~~~~-~~g~~vvv~R~~~G~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l  147 (378)
                      ++|+...+. +.|.+.++++..+|++  +|++++|||.||+|..+..+ +.+.||+||++||.+|+.+..|..    ..|
T Consensus        73 ~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa~----~~L  147 (178)
T PRK13474         73 PAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPAP----LSL  147 (178)
T ss_pred             CCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCCC----CCC
Confidence            567777766 6677744445569999  57799999999999988754 599999999999999999998874    369


Q ss_pred             ccCCceEEcCeEEEcC
Q 017058          148 KSLPCFEQEGMIWIWP  163 (378)
Q Consensus       148 ~~~~v~~~~G~I~v~~  163 (378)
                      +.|++++++|.|+|.+
T Consensus       148 ~~y~v~v~~g~v~v~~  163 (178)
T PRK13474        148 ALVHVTVEDDKVLFSP  163 (178)
T ss_pred             CeEeEEEECCEEEEEE
Confidence            9999999999999965

>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

Probab=99.55  E-value=6.8e-14  Score=124.98  Aligned_cols=160  Identities=14%  Similarity=0.021  Sum_probs=95.0

Q ss_pred             EEEEEEecChhhhhhcccccCCCCCcCcccccCCCCCcceeeeecCC-------CCCC-ceec---CCCCcceecCCeeE
Q 017058          186 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPA-------SGLQ-GYWD---PYPIDMEFRPPCMV  254 (378)
Q Consensus       186 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~---~~~~~~~~~~P~~~  254 (378)
                      ...++++||||+++||++|+||++++|+++++...............       .... ....   .......+.+||++
T Consensus         3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~   82 (182)
T cd08886           3 RLTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM   82 (182)
T ss_pred             eEEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence            45678999999999999999999999999885421100001000000       0000 0000   00112345678887


Q ss_pred             EEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHH-hhhHHHHHH
Q 017058          255 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLG  333 (378)
Q Consensus       255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~ED~~ile~  333 (378)
                      ++...    +           .....++.+.|+++++|++.+.++..-.  .....  ......+...|+ .||..+||+
T Consensus        83 i~~~~----~-----------~~~~~~~~~~P~~p~~t~~~~~~~~~~~--~~~~~--~~~~~~~~~~v~~~ED~~l~e~  143 (182)
T cd08886          83 LNVYP----G-----------AGNMGVINIIPVDAETTLQHYDFYFRDE--ELTDE--EKELIEYYRQVLQPEDLELVES  143 (182)
T ss_pred             EEeeC----C-----------CCeEEEEEEEeCCCCeEEEEEEEEecCC--CccHH--HHHHHHHHHHhcchhhHHHHHH
Confidence            65421    0           0123456679999999999887663211  11111  111224567787 999999999


Q ss_pred             HHhhccCCCCcC-Ccc------cCCCHHHHHHHHHHHH
Q 017058          334 QQERMNNGANVW-NLP------VGYDKLGVRYRLWRDA  364 (378)
Q Consensus       334 qq~~l~~g~~~~-~l~------~~aD~~~v~~Rr~l~~  364 (378)
                      +|++|.++.... .+.      ...+.++..|.+|+++
T Consensus       144 vQ~Gl~S~~~~~g~l~~~~~~~~~~E~~v~~fh~~l~~  181 (182)
T cd08886         144 VQRGLKSRAFGQGRIVVDPSGSGISEHAVHHFHGLVLE  181 (182)
T ss_pred             HhcccccCCCCCceeccCcccCCccchhHHHHHHHHhc
Confidence            999999865422 222      2356788888898763

C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and

>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases

Probab=99.55  E-value=8.3e-14  Score=126.73  Aligned_cols=167  Identities=13%  Similarity=0.014  Sum_probs=99.3

Q ss_pred             CceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCC-----CCCcc-------eeee----------ecCCCC---
Q 017058          180 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG-----WSVPS-------LVKF----------LTPASG---  234 (378)
Q Consensus       180 ~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~-----~~~~~-------~~~~----------~~~~~~---  234 (378)
                      +++......++++||||+++||++|+||++++|+++....     ...+.       ....          .+....   
T Consensus         7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (205)
T cd08884           7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVA   86 (205)
T ss_pred             hcEEccceEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCccc
Confidence            4555566788999999999999999999999999866310     00000       0000          000000   


Q ss_pred             --CCceec--CCCCcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCch
Q 017058          235 --LQGYWD--PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP  310 (378)
Q Consensus       235 --~~~~~~--~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~  310 (378)
                        ..+...  .......+.+||++++...                 ....++.+.|+++++|++.+.++......... .
T Consensus        87 p~~~~~~~~~~~~~~~~~lfPN~~~~~~~-----------------d~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~-~  148 (205)
T cd08884          87 PPLPGLTEADDRGALYYTLYPNSFLHLHP-----------------DHVVTFRVLPLSPDETLVRCKWLVHPDAVEGV-D  148 (205)
T ss_pred             CCCCCCCccccCceEEEEeCCcEEEEEcC-----------------CEEEEEEEEeCCCCceEEEEEEEECCchhccc-c
Confidence              000000  0001133467877655421                 23445667999999999988876542221111 1


Q ss_pred             hHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHH
Q 017058          311 FMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA  364 (378)
Q Consensus       311 ~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~  364 (378)
                      +.......+.+.|..||..|||.+|+++.++..........+.++..|.+|+.+
T Consensus       149 ~~~~~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~~~~g~l~~~E~~v~~F~~~~~~  202 (205)
T cd08884         149 YDLDDLVEVWDATNRQDWAICERNQRGVNSPAYRPGPYSPMEGGVLAFDRWYLE  202 (205)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhcccccCCCcCCCCcCCccHHHHHHHHHHHH
Confidence            111222346789999999999999999998654322222456788888888764

C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an

>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit

Probab=99.40  E-value=1.6e-12  Score=114.82  Aligned_cols=93  Identities=20%  Similarity=0.249  Sum_probs=78.2

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeC----------------------------------CCcEEEEccCCCCC
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR  105 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------------~G~~~a~~n~CpHr  105 (378)
                      .|..| ..++|++|+.+.+.+.|.+++|+|..                                  ++++.|+.++|||.
T Consensus        40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~  118 (174)
T TIGR01416        40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL  118 (174)
T ss_pred             CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence            46778 79999999999999999999999851                                  48999999999999


Q ss_pred             CCCCC-Ccccc-CCeeecCCCCeEEcCCCceeecCCccccccccccCCceEEcC
Q 017058          106 ACPLH-LGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG  157 (378)
Q Consensus       106 g~~L~-~g~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G  157 (378)
                      ||.+. .+... .+.+.||+||++||.+|+.+..|..    ..|+.||++..++
T Consensus       119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~----~~L~~~~~~~~~~  168 (174)
T TIGR01416       119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAP----LNLPVPPYKFLSD  168 (174)
T ss_pred             CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCCC----CCCCCCCEEEcCC
Confidence            98664 34433 5689999999999999999988874    3699999987654

Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.

>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []

Probab=99.38  E-value=8.3e-13  Score=118.55  Aligned_cols=159  Identities=15%  Similarity=0.109  Sum_probs=95.0

Q ss_pred             EEEEecChhhhhhcccccCCCCCcCcccccCCCCCcc------eeeeecCCCCCC-------------ceec--------
Q 017058          188 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPS------LVKFLTPASGLQ-------------GYWD--------  240 (378)
Q Consensus       188 ~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~------~~~~~~~~~~~~-------------~~~~--------  240 (378)
                      .++++||||+++||++|+||++++|+++++.......      ......+.....             ....        
T Consensus        11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (209)
T PF00848_consen   11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP   90 (209)
T ss_dssp             HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence            4568999999999999999999999998653211111      111111111000             0000        


Q ss_pred             ------CCCCcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHH
Q 017058          241 ------PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY  314 (378)
Q Consensus       241 ------~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~  314 (378)
                            .......+.+||+.+....    +             ...+..+.|+++++|++.+..+......  ..+.+.+
T Consensus        91 ~~~~~~~~~~~~~~iFPn~~i~~~~----~-------------~~~~~~~~P~~p~~t~~~~~~~~~~~~~--~~~~~~~  151 (209)
T PF00848_consen   91 GLPDDQRMGYRNYVIFPNLSIIVYP----D-------------HFTVRTIIPIGPDRTEVWSWWFVPKDEG--APPEFRE  151 (209)
T ss_dssp             HHHHHHHTSEEEEEETTTEEEEE-T----T-------------TTEEEEEEEESTTEEEEEEEEEEETT----STHHHHH
T ss_pred             cccccccccccceeeCCCEEEEecc----c-------------ccEEEEEEECCCCeEEEEEEEEEeCCcc--cchhhHH
Confidence                  0011234668888765321    1             1225677999999999998876543211  1222222


Q ss_pred             HHHHHHhH---HHhhhHHHHHHHHhhccCCCC-cCCcccCCCHHHHHHHHHHHHH
Q 017058          315 LWRHFAEQ---VLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDAL  365 (378)
Q Consensus       315 ~~~~~~~~---V~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rr~l~~l  365 (378)
                      .+......   |+.||..++|++|+++.++.. ...+....|..+..|++|++++
T Consensus       152 ~~~~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~~~~~~~~~~E~~v~~f~~~~~~~  206 (209)
T PF00848_consen  152 ARIRNWDRFFGVFAEDIEIVERQQRGLRSRGFDPGRLSGTSERGVRHFHRWWRRY  206 (209)
T ss_dssp             HHHHHHHHHHSTHHHHHHHHHHHHHHTTSSTSCTSEESSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence            22222223   899999999999999988543 2223457888999999887653

The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....

>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.18  E-value=1.1e-10  Score=101.69  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             CCcEEEEccCCCCCCCCCCC---------------ccccCCeeecCCCCeEEcC-CC-ceeecCCccccccccccCCceE
Q 017058           92 DGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCFE  154 (378)
Q Consensus        92 ~G~~~a~~n~CpHrg~~L~~---------------g~~~~~~l~CpyHgw~f~~-~G-~~~~~P~~~~~~~~l~~~~v~~  154 (378)
                      +|+++|++++|+|+||+|..               |...++.|.||+|||+||. +| ..+..|+.    ..|..|++++
T Consensus        74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L~~  149 (171)
T cd03475          74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVILEY  149 (171)
T ss_pred             CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEEEE
Confidence            79999999999999998752               4556789999999999996 55 45555654    3589999987


Q ss_pred             Ec--CeEEE
Q 017058          155 QE--GMIWI  161 (378)
Q Consensus       155 ~~--G~I~v  161 (378)
                      .+  |.||+
T Consensus       150 d~~~d~iyA  158 (171)
T cd03475         150 DSSTDDLYA  158 (171)
T ss_pred             eCCCCcEEE
Confidence            74  78886

SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.

>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO)

Probab=98.93  E-value=4.6e-09  Score=83.19  Aligned_cols=87  Identities=37%  Similarity=0.778  Sum_probs=64.2

Q ss_pred             ecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccc-hhhccCchhHHHHHHHH-HhHHHh
Q 017058          248 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF-ASVLKHVPFMQYLWRHF-AEQVLN  325 (378)
Q Consensus       248 ~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~V~~  325 (378)
                      |.+||++.+.....        ....+..+++.+++|+|+++++||+++++.++| ....+.+|   .++.+. .++|++
T Consensus         1 F~pPc~v~~~~~~~--------~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P---~wl~H~~~n~VLd   69 (92)
T PF08417_consen    1 FIPPCLVRSTEEGP--------KKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIP---RWLSHLTSNKVLD   69 (92)
T ss_pred             CCCCEEEEEecccc--------ccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCC---HHHHHHhhCcccH
Confidence            57899987761110        111233567788999999999999999999998 34444556   444444 489999


Q ss_pred             hhHHHHHHHHhhccC-CCCcC
Q 017058          326 EDLRLVLGQQERMNN-GANVW  345 (378)
Q Consensus       326 ED~~ile~qq~~l~~-g~~~~  345 (378)
                      ||..+|..||+.+.+ |.+.|
T Consensus        70 ~Dl~lLh~Qe~~l~~~g~~~W   90 (92)
T PF08417_consen   70 QDLYLLHGQERRLAREGADNW   90 (92)
T ss_pred             HHHHHHHHHHHHHHHhccCcC
Confidence            999999999999987 66665

One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process

>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases

Probab=98.91  E-value=8.3e-09  Score=96.35  Aligned_cols=85  Identities=9%  Similarity=-0.036  Sum_probs=52.8

Q ss_pred             EEEEEec--CCCCeEEEEEEeeccchhhccCc------hhHHHHHHHH--HhHHHhhhHHHHHHHHhhccCCCCcCCccc
Q 017058          280 QLHVCLP--SSRKKTRLLYRMSLDFASVLKHV------PFMQYLWRHF--AEQVLNEDLRLVLGQQERMNNGANVWNLPV  349 (378)
Q Consensus       280 ~~~~~~P--~~~~~tr~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~V~~ED~~ile~qq~~l~~g~~~~~l~~  349 (378)
                      .++.+.|  .++++|.+...++....+.....      ...... ..+  ...|+.||..+|+.+|++|.++........
T Consensus       146 ~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~~~~l~  224 (243)
T cd08882         146 LVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDA-PELGGLGLVLDQDFSNLPAVQKGMHSRGFGGLVLA  224 (243)
T ss_pred             EEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccc-cccccccchhHhHHHHHHHHHHHhccCCCCCcccC
Confidence            3455677  59999998877654332211100      001111 122  368999999999999999998654322222


Q ss_pred             CCC-HHHHHHHHHHHHH
Q 017058          350 GYD-KLGVRYRLWRDAL  365 (378)
Q Consensus       350 ~aD-~~~v~~Rr~l~~l  365 (378)
                      ... ..+..|.+|++++
T Consensus       225 ~~EE~~I~~FH~~l~~~  241 (243)
T cd08882         225 NQEESRIRHFHEVLDDY  241 (243)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            333 7888888998764

C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l

>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp

Probab=98.89  E-value=6.7e-09  Score=95.68  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=77.2

Q ss_pred             EEEEEecChhhhhhcccccCCCCCcCc--ccccCCC-CCc--ceeeeec-------CCCCCC----c-------------
Q 017058          187 IVMELPIEHGLLLDNLLDLAHAPFTHT--STFAKGW-SVP--SLVKFLT-------PASGLQ----G-------------  237 (378)
Q Consensus       187 ~~~~~~~nwk~~~EN~~D~~H~~~vH~--~~~~~~~-~~~--~~~~~~~-------~~~~~~----~-------------  237 (378)
                      .+.++++|||+.+||++|.||++++|.  .||+... +..  ..+....       +.....    +             
T Consensus         4 ~~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (222)
T cd08880           4 YRQRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHGRHSVMTSTKSGDDEAAEKDSEEIRSFRDDFT   83 (222)
T ss_pred             eeeecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCCCceEEEEecCCCcccccchHHHHHHHhhccc
Confidence            356789999999999999999999999  7886421 111  1111100       000000    0             


Q ss_pred             eecC--------C--C--CcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhh
Q 017058          238 YWDP--------Y--P--IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV  305 (378)
Q Consensus       238 ~~~~--------~--~--~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~  305 (378)
                      ..+.        +  .  ......+||+++...                 .....+..+.|.++++|++.+.++.. .. 
T Consensus        84 l~d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~~-----------------~~~l~v~~~~P~gpd~t~~~~~~~~~-~~-  144 (222)
T cd08880          84 LLDPSLLDGRAEFDDDITLVIQSIFPSLVVQQI-----------------QNTLAVRHIIPKGPDSFELVWTYFGY-ED-  144 (222)
T ss_pred             cCCHHHHhhhHhhcCCCceEEEEECCCEEEecc-----------------CCcEEEEEEEecCCCeEEEEEEEEEe-cC-
Confidence            0000        0  0  112345677665321                 11234556789999999987766532 11 


Q ss_pred             ccCchhH-HHHHH--HH---HhHHHhhhHHHHHHHHhhccCCCCc
Q 017058          306 LKHVPFM-QYLWR--HF---AEQVLNEDLRLVLGQQERMNNGANV  344 (378)
Q Consensus       306 ~~~~~~~-~~~~~--~~---~~~V~~ED~~ile~qq~~l~~g~~~  344 (378)
                        +.+.. +....  .+   ...|..||..++|++|+++.++...
T Consensus       145 --~~~e~~~~~~~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~~~~  187 (222)
T cd08880         145 --DDEEMTRLRLRQANLVGPAGFVSMEDGEAIEFVQRGVEGDGGD  187 (222)
T ss_pred             --CCHHHHHHHHHHhcccCCcCCCccchHHHHHHhCchhcCCCcc
Confidence              11111 11111  11   1358889999999999999876543

strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg

>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium

Probab=98.74  E-value=4.6e-08  Score=88.42  Aligned_cols=187  Identities=18%  Similarity=0.236  Sum_probs=99.3

Q ss_pred             CCceEeeEEEEEEecChhhhhhcccccCCCCCcCccccc---CCCCCc---------ceeeeecCCCCCCceecCCC---
Q 017058          179 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA---KGWSVP---------SLVKFLTPASGLQGYWDPYP---  243 (378)
Q Consensus       179 ~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~---  243 (378)
                      .+..+. .....+.+||.+.+||.+|..|+ |+|+.+.-   ..+..|         ..++......+++|..+.+.   
T Consensus        21 ~~~~~~-g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~~~~   98 (240)
T PF11723_consen   21 DDIVIF-GMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLTEHY   98 (240)
T ss_dssp             TTEEEE-EEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CHHHE
T ss_pred             CcceEE-eeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeecccccc
Confidence            444443 56678999999999999999998 99996431   111111         12233333345555433210   


Q ss_pred             --C--------cc--eecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchh
Q 017058          244 --I--------DM--EFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF  311 (378)
Q Consensus       244 --~--------~~--~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~  311 (378)
                        +        ..  .-..|..+...+++.-||-+.....+  ..+++++-..+|+++++.+++..+.+.-........+
T Consensus        99 ~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~V~~~P--~p~~~qyEwYVPID~~~h~Y~q~l~~~~~t~ee~~~f  176 (240)
T PF11723_consen   99 EPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLMVENWP--YPDFTQYEWYVPIDEDTHRYFQLLGKVCPTEEERKAF  176 (240)
T ss_dssp             EEESEEEETTEEEEE-BESSBE--SEEEEETTTEEEEES-S--STTEEEEEEEEEEETTEEEEEEEEEEE-SSHHHHHHH
T ss_pred             eEEEecccCCceeecCCCCCceeEEEeeEeccceeecccCC--CCCeeEEEEEEEecccceeeEeEEeeecCCHHHHHHH
Confidence              0        00  00012222223333344322111110  1457777778999999999987665432111111111


Q ss_pred             ---HHHHHH-HHHhHHHhhhHHHHHHHHhhccCCC-CcCCcccCCCHHHHHHHHHHHHHHcCC
Q 017058          312 ---MQYLWR-HFAEQVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGA  369 (378)
Q Consensus       312 ---~~~~~~-~~~~~V~~ED~~ile~qq~~l~~g~-~~~~l~~~aD~~~v~~Rr~l~~l~~g~  369 (378)
                         ++..+. .+...+..+|..+.|+.|+-...+. -..|....+|+.++++||..++..+|.
T Consensus       177 ~~~f~~~~~~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~L~~~D~sIi~WRkLas~~nrgI  239 (240)
T PF11723_consen  177 EYEFEEQWKPLALHGFNDDDIWAREAMQPFYADDTGWDREQLFEPDKSIIAWRKLASEHNRGI  239 (240)
T ss_dssp             HHHHHHTHHHHTTTTTTHHHHHHHHHHHHHHHTSHHHHH----GGGHHHHHHHHHHHHH-SEB
T ss_pred             HHHHHHHhHHhhccCCCchhHHHHHHhhhhhhccCCCCHHHhcCcchhHHHHHHHHHHhhccC
Confidence               112222 3456788999999999998776642 123677899999999999999887663

The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.

>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases

Probab=98.72  E-value=4.2e-08  Score=89.27  Aligned_cols=130  Identities=16%  Similarity=0.091  Sum_probs=72.7

Q ss_pred             EEEEEEecChhhhhhccc-ccCCCCCcCcccccCCCCCcceeeeecCCCCCCceecC-C---------CCcceecCCeeE
Q 017058          186 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDP-Y---------PIDMEFRPPCMV  254 (378)
Q Consensus       186 ~~~~~~~~nwk~~~EN~~-D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~P~~~  254 (378)
                      ..++.++||||+++||++ |+||++++|.+++........ ........+.+ +... .         .....+.+|++.
T Consensus         8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~~~~~-~~~~~~~~g~~-~~~~~~GHg~~~~~~~~~~~~iFPN~~   85 (206)
T cd08881           8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAGLPPDA-ADLPPIDLGLQ-FTAPWHGHGLGFFLDSPQHGTIFPNLS   85 (206)
T ss_pred             cEEEEecCcceehhhccccccccchhhhHHHHHhhCCccc-ccCCCCCCCcE-EEeCCCCeEEEEeccCcceeeECCcch
Confidence            467889999999999998 999999999998754321100 00000000100 0000 0         011223445554


Q ss_pred             EEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCch-hHHHHHHHHHhH-------HHhh
Q 017058          255 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQYLWRHFAEQ-------VLNE  326 (378)
Q Consensus       255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------V~~E  326 (378)
                      +...                 . ...+....|+++++|.+.+.++...     +.+ ..+..+......       +-.|
T Consensus        86 ~~~~-----------------~-~~~~r~~~P~gp~~tev~~~~~~~k-----da~e~~~~~~~~~~~~~~gpaG~~~~D  142 (206)
T cd08881          86 FLPG-----------------Y-FNTLRVWHPRGPDETEVWTWTLVDK-----DAPEEVKDRVRRQYTRTFGPAGTFEQD  142 (206)
T ss_pred             hhhc-----------------c-CceEEEEEeCCCCeEEEEEEEEecC-----CCCHHHHHHHHHHHHhccCCcCCCcCc
Confidence            3221                 0 2345556899999999876665432     122 122222222222       3359


Q ss_pred             hHHHHHHHHhhccC
Q 017058          327 DLRLVLGQQERMNN  340 (378)
Q Consensus       327 D~~ile~qq~~l~~  340 (378)
                      |..++|.+|+++..
T Consensus       143 D~e~~e~~Q~g~~~  156 (206)
T cd08881         143 DGENWEEITRVARG  156 (206)
T ss_pred             hHHHHHHHHHhhcc
Confidence            99999999999874

C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th

>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]

Probab=98.72  E-value=2.1e-08  Score=89.11  Aligned_cols=78  Identities=26%  Similarity=0.396  Sum_probs=60.2

Q ss_pred             eeEEEEEeCCCc-----EEEEccCCCCCCCCCCC-ccccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceEEc
Q 017058           83 EPWVIFRGKDGI-----PGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE  156 (378)
Q Consensus        83 ~~vvv~R~~~G~-----~~a~~n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~  156 (378)
                      .+...++..++.     +.|+..+|+|.||.+.. +....+.+.|||||.+||.+|+.+..|+..    .|..++++...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~~----~L~~~~~~~~~  159 (177)
T COG0723          84 PKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAPR----PLPIPPLEYDS  159 (177)
T ss_pred             ccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCCC----CcCCceEEEeC
Confidence            444444544544     45999999999999998 567789999999999999999999998853    68888887777


Q ss_pred             CeEE-EcCC
Q 017058          157 GMIW-IWPG  164 (378)
Q Consensus       157 G~I~-v~~~  164 (378)
                      +-++ +..+
T Consensus       160 d~~~~~~~~  168 (177)
T COG0723         160 DKLYLIGLG  168 (177)
T ss_pred             CceEEEEec
Confidence            6444 4443

>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases

Probab=98.61  E-value=1.1e-07  Score=88.60  Aligned_cols=31  Identities=32%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             EEEEEecChhhhhhcccccCCCCCcCccccc
Q 017058          187 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA  217 (378)
Q Consensus       187 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~  217 (378)
                      .++.++||||+.+||+.|.||++++|.+++.
T Consensus         4 ~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~   34 (237)
T cd08879           4 HRYRYRGNWKLQLENGTDGYHPPFVHASYVA   34 (237)
T ss_pred             eEEEeeceEEEEeeecCccccCccccHHHHH
Confidence            4678999999999999999999999998874

C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are

>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2

Probab=98.43  E-value=4.6e-07  Score=85.75  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=52.0

Q ss_pred             CCCcEEEEccCCCCCCCCCCCc------c----------------------c---cCCeeecCCCCeEEcC-C-Cceeec
Q 017058           91 KDGIPGCVQNTCAHRACPLHLG------S----------------------V---NEGRIQCPYHGWEYST-D-GKCEKM  137 (378)
Q Consensus        91 ~~G~~~a~~n~CpHrg~~L~~g------~----------------------~---~~~~l~CpyHgw~f~~-~-G~~~~~  137 (378)
                      .++.|.||+.+|+|.||++..-      .                      -   ..+.+.|||||.+||. + |+.+..
T Consensus       174 p~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~G  253 (321)
T TIGR03171       174 PNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTG  253 (321)
T ss_pred             CCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCC
Confidence            4578999999999999988321      0                      0   1248999999999996 3 579999


Q ss_pred             CCccccccccccCCceEE--cCeEEEc
Q 017058          138 PSTQLRNVKIKSLPCFEQ--EGMIWIW  162 (378)
Q Consensus       138 P~~~~~~~~l~~~~v~~~--~G~I~v~  162 (378)
                      |+..    .|..++++..  +|.|++-
T Consensus       254 PA~r----pLp~i~l~~d~~~~~l~Av  276 (321)
T TIGR03171       254 PTVR----PLPAVILEWDSSTDYLYAI  276 (321)
T ss_pred             CCCC----CCCcceEEEeCCCCeEEEE
Confidence            8854    5888888776  4677763

This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.

>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]

Probab=98.40  E-value=3.3e-07  Score=80.44  Aligned_cols=74  Identities=27%  Similarity=0.397  Sum_probs=63.5

Q ss_pred             ecCCCCCCCeEEEEECCeeEEEE--------------------------EeCCCcEEEEccCCCCCCCCCCCccccCCee
Q 017058           66 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI  119 (378)
Q Consensus        66 ~~~el~~g~~~~~~~~g~~vvv~--------------------------R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l  119 (378)
                      ..++||+|+-++++-.|+|+++-                          |.++-++.++..+|.|.||-...-.++.+..
T Consensus        91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~  170 (210)
T KOG1671|consen   91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY  170 (210)
T ss_pred             eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence            46788889999999999998884                          3334457899999999999888777888889


Q ss_pred             ecCCCCeEEcCCCceeecCC
Q 017058          120 QCPYHGWEYSTDGKCEKMPS  139 (378)
Q Consensus       120 ~CpyHgw~f~~~G~~~~~P~  139 (378)
                      .|||||..||..|+..+.|+
T Consensus       171 ~CPCHGSHYdasGRIrkGPA  190 (210)
T KOG1671|consen  171 YCPCHGSHYDASGRIRKGPA  190 (210)
T ss_pred             ecccccccccccCceecCCC
Confidence            99999999999999999986

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.15  E-value=0.0026  Score=63.67  Aligned_cols=38  Identities=34%  Similarity=0.804  Sum_probs=34.9

Q ss_pred             CCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCCcc
Q 017058          104 HRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ  141 (378)
Q Consensus       104 Hrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~~~  141 (378)
                      |.|+||..|-...++++||+||..|+. +|....-|+..
T Consensus         1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~   39 (478)
T KOG1336|consen    1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD   39 (478)
T ss_pred             CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence            899999999888999999999999995 99999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
3gke_A	349	Crystal Structure Of Dicamba Monooxygenase Length =		8e-16
3gkq_A	389	Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr		2e-09
3gcf_A	394	Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr		7e-08
1ww9_A	392	Crystal Structure Of The Terminal Oxygenase Compone		2e-06
3n0q_A	409	Crystal Structure Of A Putative Aromatic-Ring Hydro		2e-06
3vca_A	412	Quaternary Ammonium Oxidative Demethylation: X-Ray		3e-06
2zyl_A	386	Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl		4e-06

>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 55  TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 114
           T ++N W+  A   +L +  +      + P  ++R  DG+   + + C HR  PL  G +
Sbjct: 3   TFVRNAWYVAALPEELSEKPL-GRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGIL 61
Query: 115 NEGRIQCPYHGWEYSTDGKCEKMP---STQLRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 171
             G +QCPYHG E+   G+C   P     +  ++ ++S P  E++ +IWIWPGD  P   
Sbjct: 62  VNGHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGD--PALA 119
Query: 172 IPCLLPPSGFEI 183
            P  +P  G  +
Sbjct: 120 DPGAIPDFGCRV 131

>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Novosphingobium Sp. Ka1 Length = 389

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 57  LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL--HLGSV 114
            +N W+PV  S ++ + + VP     E  V+    DG+   + + C HR   L   +   
Sbjct: 28  FRNHWYPVRLSAEVAEASPVPVQLLGEK-VLLNRVDGVVHAIADRCLHRGVTLSDKVECY 86
Query: 115 NEGRIQCPYHGWEYSTD-GKCEKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168
           ++  I C YHGW Y  D GK   +     S Q+    +K+ P  E++G+++++ GD+ P
Sbjct: 87  SKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP 145

>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Nocardioides Aromaticivorans Ic177 Length = 394

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 18  TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVP 77
           T Q  + P+ +  S  +   K PR      G          N W P AF  +L +   V 
Sbjct: 3   TSQEISDPAQATSSAQV---KWPRYLEATLG--------FDNHWHPAAFDHELAEGEFVA 51
Query: 78  FDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS-TDGKC 134
                E  ++ R K G    + + CAHR  P     +    G + C YHGW Y   DG+ 
Sbjct: 52  VTMLGEKVLLTRAK-GEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRL 110
Query: 135 EKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGF 181
             +     S  +  + IK  P    +G+++++ GDE P A    L  P GF
Sbjct: 111 VDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEPHALSEDL--PPGF 159

>pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase System Catalyzing The Novel Angular Dioxygenation For Carbazole And Dioxin Length = 392

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 57  LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SV 114
            +N W+PV FS ++ +          E  ++ R  DG   C+++ C HR   L +     
Sbjct: 25  FRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECK 83
Query: 115 NEGRIQCPYHGWEYS-TDGK-CEKM---PSTQLRNVKIKSLPCFEQEGMIWIW--PGDEP 167
            +  I C YH W Y   DG  C+ +    S Q+   K+K+ P  E +G ++I+   GD P
Sbjct: 84  TKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP 143
Query: 168 PTATIPCLLPPSGFEIHAEIV 188
           P A      PP+  +   EI+
Sbjct: 144 PLARDT---PPNFLDDDMEIL 161

>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring Hydroxylating Dioxygenase (Tm1040_3219) From Silicibacter Sp. Tm1040 At 1 Resolution Length = 409

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 86  VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKC----EKMP 138
           +I RG D +     N C HR    C    G  N  ++ CPYH W Y  DG+     +  P
Sbjct: 68  IIVRGADNVIRAFHNACRHRGSVICKAKKG--NNPKLVCPYHQWTYELDGRLLWARDXGP 125
Query: 139 STQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168
             +     +K++ C E  G+I+I   DE P
Sbjct: 126 DFEPSRHGLKTVHCRELAGLIYICLADEAP 155

>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray Crystallographic, Resonance Raman And Uv-Visible Spectroscopic Analysis Of A Rieske- Type Demethylase Length = 412

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 86  VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKC----EKMP 138
           VI R +DG      N+C HR    C    G V   ++ CPYH W Y  DGK     +  P
Sbjct: 70  VIVRSRDGEVRAFHNSCRHRGSLICKARQGQV--AKLVCPYHQWTYELDGKLIWANDMGP 127
Query: 139 STQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIH 184
                   +K +     +G+I+I   D PP       L     E+H
Sbjct: 128 DFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVH 173

>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 55  TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 114
           TR    W  +  + D  +      + F    V+F    G    +   C H    L  G+V
Sbjct: 20  TRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV 79
Query: 115 NEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE----PP 168
               + CP+H W +  DG+C+ +P  +   R  + +S     + G++++W   E     P
Sbjct: 80  KGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
Query: 169 TATIP 173
              IP
Sbjct: 140 AVRIP 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
3gke_A	349	DDMC; rieske cluster, non-heme mononuclear iron, o	6e-83
3gcf_A	394	Terminal oxygenase component of carbazole 1,9A- di	1e-64
3gkq_A	389	Terminal oxygenase component of carbazole 1,9A- di	2e-63
2zyl_A	386	Possible oxidoreductase; KSHA, cholesterol, rieske	2e-53
1z01_A	446	2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen	7e-52
2de6_A	392	Terminal oxygenase component of carbazole; electro	4e-51
1vm9_A	111	Toluene-4-monooxygenase system protein C; structur	1e-15
3dqy_A	106	Toluene 1,2-dioxygenase system ferredoxin subunit;	2e-15
2i7f_A	108	Ferredoxin component of dioxygenase; rieske ferred	1e-14
2qpz_A	103	Naphthalene 1,2-dioxygenase system ferredoxin subu	3e-14
2de6_D	115	Ferredoxin component of carbazole; electron transf	1e-13
2b1x_A	470	Naphthalene dioxygenase large subunit; rieske non-	1e-13
2gbw_A	454	Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy	2e-13
2bmo_A	447	Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni	2e-13
3vca_A	412	Ring-hydroxylating dioxygenase; rieske-type, monon	2e-13
3n0q_A	409	Putative aromatic-ring hydroxylating dioxygenase;	3e-13
3gce_A	121	Ferredoxin component of carbazole 1,9A- dioxygenas	5e-13
3gzx_A	457	Biphenyl dioxygenase subunit alpha; rieskie, non-h	9e-13
3d89_A	157	Rieske domain-containing protein; CAsp target, rie	1e-12
1fqt_A	112	Rieske-type ferredoxin of biphenyl dioxygenase; 2F	3e-12
1uli_A	460	Biphenyl dioxygenase large subunit; alpha3 BETA3 h	6e-12
2jo6_A	113	Nitrite reductase [NAD(P)H] small subunit; all bet	2e-10
2jza_A	130	Nitrite reductase [NAD(P)H] small subunit; ISP dom	4e-10
3c0d_A	119	Putative nitrite reductase NADPH (small subunit) o	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349

 Score =  255 bits (654), Expect = 6e-83
 Identities = 76/355 (21%), Positives = 132/355 (37%), Gaps = 56/355 (15%)

Query: 57  LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
           ++N W+  A   +L +   +     + P  ++R  DG+   + + C HR  PL  G +  
Sbjct: 5   VRNAWYVAALPEELSE-KPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVN 63

Query: 117 GRIQCPYHGWEYSTDGKCEKMPSTQ---LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 173
           G +QCPYHG E+   G+C   P        ++ ++S P  E++ +IWIWPGD       P
Sbjct: 64  GHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALAD--P 121

Query: 174 CLLPPSGFEIHAE-----IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA----------- 217
             +P  G  +            +   + LL+DNL+DL HA + H +              
Sbjct: 122 GAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVHRANAQTDAFDRLEREV 181

Query: 218 --------------KGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKP 263
                          G     + KFL  A+     W     D+ +     +L+ I ++  
Sbjct: 182 IVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAW----NDIRWNKVSAMLNFIAVAPE 237

Query: 264 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQ- 322
           G       ++ + H    H+  P +       +  S +F       P M  + R +  Q 
Sbjct: 238 GT-----PKEQSIHSRGTHILTPETEASCHYFFGSSRNFG---IDDPEMDGVLRSWQAQA 289

Query: 323 VLNEDLRLVLGQQERMNNGANVWN---LPVGYDKLGVRYRLWRDAL---EKGAKQ 371
           ++ ED  +V   + R              +  D+  VR     + L   E    +
Sbjct: 290 LVKEDKVVVEAIERRRAY-VEANGIRPAMLSCDEAAVRVSREIEKLEQLEAARLE 343

>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394

 Score =  210 bits (535), Expect = 1e-64
 Identities = 66/358 (18%), Positives = 110/358 (30%), Gaps = 45/358 (12%)

Query: 57  LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-- 114
             N W P AF  +L +   V      E  ++ R   G    + + CAHR  P     +  
Sbjct: 31  FDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTRA-KGEVKAIADGCAHRGVPFSKEPLCF 89

Query: 115 NEGRIQCPYHGWEYS-TDGKCEKMP----STQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 169
             G + C YHGW Y   DG+   +     S  +  + IK  P    +G+++++ GDE P 
Sbjct: 90  KAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEPH 149

Query: 170 ATIPCLLPP--SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF----------- 216
           A    L P           I   +     L ++N  D  H  F H ++            
Sbjct: 150 ALSEDLPPGFLDEDTHLLGIRRTVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNRLAFPY 208

Query: 217 -------------AKGWSVPSLVK-FLTPASGLQGYWDPYPIDMEFRPPCM--VLSTIGI 260
                         + W    L +         +   D   +           V + + +
Sbjct: 209 GFVPADRDAMQVYDENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEKKVAAQVSV 268

Query: 261 SKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWR 317
             PG L+          L Q    +P S  +      +         V       +  WR
Sbjct: 269 WLPGVLKVDPFP--DPTLIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWR 326

Query: 318 HFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGY--DKLGVRYRLWRDALEKGAKQLP 373
             A    N+D       Q+      + W+    +  D   V++R       +G +   
Sbjct: 327 DDALHGFNDDDVWAREAQQEFYGERDGWSKEQLFPPDMCIVKWRTLASERGRGVRAAR 384

>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389

 Score =  206 bits (526), Expect = 2e-63
 Identities = 66/375 (17%), Positives = 130/375 (34%), Gaps = 47/375 (12%)

Query: 39  LPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCV 98
           +  +      P        +N W+PV  S ++ + + VP     E  ++ R  DG+   +
Sbjct: 10  IAERRTRAWAPYIDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAI 68

Query: 99  QNTCAHRACPLHLG--SVNEGRIQCPYHGWEYSTD-GKCEKMPS----TQLRNVKIKSLP 151
            + C HR   L       ++  I C YHGW Y  D GK   + +     Q+    +K+ P
Sbjct: 69  ADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYP 128

Query: 152 CFEQEGMIWIWPGDEPPTATIPCLLP---PSGFEIHAEIVMELPIEHGLLLDNLLDLAHA 208
             E++G+++++ GD+ P      + P    +   +H +    +     + ++N  D  H 
Sbjct: 129 VREEKGLVFLFVGDQEPHDLAEDVPPGFLDADLAVHGQ-HRVVDANWRMGVENGFDAGHV 187

Query: 209 PFTHTSTF---AKGWSVP---------SLVKFLTPASGLQGYWD--------PYPIDMEF 248
            F H S+        ++P          L + +T     +G +D         +   +E 
Sbjct: 188 -FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEG 246

Query: 249 RPPC-------MVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLD 301
           +P         MV  +I +  PG L+          L Q    +P        L  +   
Sbjct: 247 QPAIQGHMGSKMVAISISVWLPGVLKVDPFPD--PTLTQFEWYVPIDEGHHLYLQMLGRR 304

Query: 302 FASVLKHVPFMQYLWRHFAE----QVLNEDLRLVLGQQERMNNGANVWN-LPVGYDKLGV 356
             S  +   F       + E       ++D+      +    +       +    D+  +
Sbjct: 305 VGSEEEARSFEAEFREKWVELALNGFNDDDILARRSMEPFYADDRGWREEVLFESDRAII 364

Query: 357 RYRLWRDALEKGAKQ 371
            +R       +G + 
Sbjct: 365 EWRRLASQYNRGIQT 379

>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386

 Score =  180 bits (458), Expect = 2e-53
 Identities = 57/335 (17%), Positives = 107/335 (31%), Gaps = 38/335 (11%)

Query: 49  PVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP 108
                 TR    W  +  + D  +      + F    V+F    G    +   C H    
Sbjct: 14  DAGALPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGD 73

Query: 109 LHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE 166
           L  G+V    + CP+H W +  DG+C+ +P  +   R  + +S     + G++++W   E
Sbjct: 74  LSEGTVKGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHE 133

Query: 167 --PPTA-----TIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST---- 215
             PP        IP        +     ++        ++DN+ D+AH  + H       
Sbjct: 134 GNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIHFGLPTYF 193

Query: 216 ---FAKGWSVPSLVKFLTPASGLQGYWDPYP---IDMEFRPPCMVLSTIGISKPGKLEGQ 269
              F    +   L     P     G          +  +  P  +++ +           
Sbjct: 194 KNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNYKSES 253

Query: 270 NTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLN---E 326
               C           P ++    L + + ++    +        L R F E V     +
Sbjct: 254 ILINCHY---------PVTQNSFVLQWGVIVEKPKGMSE-EMTDKLSRVFTEGVSKGFLQ 303

Query: 327 DLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLW 361
           D+  +   + R++N      L V  D    + R W
Sbjct: 304 DVE-IWKHKTRIDNP-----LLVEEDGAVYQLRRW 332

>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446

 Score =  178 bits (451), Expect = 7e-52
 Identities = 60/380 (15%), Positives = 112/380 (29%), Gaps = 64/380 (16%)

Query: 40  PRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99
             K+ +   P +       N W+P  F+ +L++D +        P V+ R  +G    ++
Sbjct: 23  NAKTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALK 81

Query: 100 NTCAHRACPLHLGSV--NEGRIQCPYHGWEYSTD-GKCEKMPS----TQLRNVKIKSLPC 152
           + C HR   L        +  I C YHG+ +  + GK   + +      +    + + P 
Sbjct: 82  DQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPV 141

Query: 153 FEQEGMIWIWPGD-EPPTATIPCLLPPSGFEIHAE------------------------I 187
            E  GMI+++  + + P   +P L     F                             +
Sbjct: 142 HEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVHGM 201

Query: 188 VMELPIEHGLLLDNLLDLAHAPFTHTSTF--AKGWSVPSLVKFLTPASGLQGYWDPYPID 245
                    +  +N  D AH      +T   A  W +P  +   +         D  P  
Sbjct: 202 HRTGFGNWRIACENGFDNAHILVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVEDDDGPKG 261

Query: 246 M------EFRPPCMVLSTIGISK--------------PGKLEGQNTRQCATHLHQLHVCL 285
           M      +   P +    +G+                PG L  +N      H+ Q    +
Sbjct: 262 MMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVENWP--EEHVVQYEWYV 319

Query: 286 PSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAE----QVLNEDLRLVLGQQERMNNG 341
           P +         +     +      F       +         + DL      Q    +G
Sbjct: 320 PITDDTHEYWEILVRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDG 379

Query: 342 ANVWNLPVGY--DKLGVRYR 359
              W+       D   + +R
Sbjct: 380 TG-WDDEQLVATDISPITWR 398

>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392

 Score =  174 bits (443), Expect = 4e-51
 Identities = 65/369 (17%), Positives = 114/369 (30%), Gaps = 52/369 (14%)

Query: 48  GPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 107
            P        +N W+PV FS ++ +          E  ++ R  DG   C+++ C HR  
Sbjct: 16  APYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGV 74

Query: 108 PLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMPS----TQLRNVKIKSLPCFEQEGMIW 160
            L +      +  I C YH W Y   DG    + +     Q+   K+K+ P  E +G ++
Sbjct: 75  QLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVF 134

Query: 161 IWPGDEPPTA----TIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF 216
           I+ GD  P      T P  L     EI       +     L ++N  D +H      S  
Sbjct: 135 IYLGDGDPPPLARDTPPNFLDD-DMEILG-KNQIIKSNWRLAVENGFDPSHIYIHKDSIL 192

Query: 217 AKGWSVPSLVKFLT----------------------------PASGLQGYWDPYPIDMEF 248
            K   +   + F                                   +G      +    
Sbjct: 193 VKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGA 252

Query: 249 RPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKH 308
               +V + I I  PG L+            + +V  P           +    A+  + 
Sbjct: 253 YGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYV--PIDENTHYYFQTLGKPCANDEER 310

Query: 309 VPFMQYLWRHFAEQVL----NEDLRLVLGQQERMNNGANVWNLPVGY--DKLGVRYR-LW 361
             + Q     +    L    N+D+       +   +    W   + +  D+  V +R L 
Sbjct: 311 KKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKG-WVNEILFESDEAIVAWRKLA 369

Query: 362 RDALEKGAK 370
            +  +    
Sbjct: 370 SEHNQGIQT 378

>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFE-EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 119
           +  +    D+    M  F+  +    +I   ++      Q  C H+   L  GS   G I
Sbjct: 2   FEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVI 61

Query: 120 QCPYHGWEYS-TDGKCEKMPSTQLR--NVKIKSLPCFEQEGMIWIWPGDEPPTAT 171
            C  H W ++   G         L    V++       +   I++      P   
Sbjct: 62  TCRAHLWTFNDGTGHGINPDDAALAEYPVEV-------KGDDIYVSTKGILPNKA 109

>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106

 Score = 70.7 bits (174), Expect = 2e-15
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 12/105 (11%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W  +    DL    M  ++   EP ++          VQ+TC H    L  G ++   ++
Sbjct: 2   WTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEF-FAVQDTCTHGDWALSDGYLDGDIVE 60

Query: 121 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 161
           C  H  ++    GK + +P+        K +  F    +   + +
Sbjct: 61  CTLHFGKFCVRTGKVKALPAC-------KPIKVFPIKVEGDEVHV 98

>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
              +     +KD   V     + P +     DG      N C H    L  G  +   I+
Sbjct: 4   KLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQDGTIIE 63

Query: 121 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTA 170
           CP+HG  +    G  +  P      + IK+ P   ++G + I   D+P  +
Sbjct: 64  CPFHGGSFDIATGAAKAFPCQ----IPIKTYPVTIEDGWVCI---DQPKES 107

>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103

 Score = 67.2 bits (165), Expect = 3e-14
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           W      +D+ +  ++      +   ++  +  I     N C H +  +  G +    I+
Sbjct: 4   WIEAVALSDILEGDVLGVTVEGKELALYEVEGEI-YATDNLCTHGSARMSDGYLEGREIE 62

Query: 121 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 161
           CP H   +    GK    P T       +++  +    +   + I
Sbjct: 63  CPLHQGRFDVCTGKALCAPVT-------QNIKTYPVKIENLRVMI 100

>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWV-IFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 119
           W  V  ++D++  T+   +      + ++R  D      ++TC H    L  G+++   I
Sbjct: 5   WLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQF-YATEDTCTHGIASLSEGTLDGDVI 63

Query: 120 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 173
           +CP+HG  ++   G     P T    V +       +EG +++    +       
Sbjct: 64  ECPFHGGAFNVCTGMPASSPCT----VPLGVFEVEVKEGEVYVAGEKKLEHHHHH 114

>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 30/190 (15%)

Query: 61  WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVN 115
           W  +A  +++ +  D +V     E+ +++ R + G      N C HR    C   +G  N
Sbjct: 46  WVFLAHESEIPERGDYVV-RYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMG--N 102

Query: 116 EGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIWPGDE 166
               +CPYHGW YS  G    +P+ +          +  ++ +P     +G+I+      
Sbjct: 103 TSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPH 162

Query: 167 PP---------TATIPCLLPPSGFEIHAEIVMELPIEHG---LLLDN-LLDLAHAPFTHT 213
                         +  +L  S   +      +  +      L  DN + D  H   TH 
Sbjct: 163 ADSLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHR 222

Query: 214 STFAKGWSVP 223
           S    G + P
Sbjct: 223 SMVELGLAPP 232

>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 26/160 (16%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
           E+  ++    DG      N+C+HR    C    G  N     C YHGW +  DG    +P
Sbjct: 60  EDKVILSHQSDGTFRAFINSCSHRGNQICHADSG--NAKAFVCNYHGWVFGQDGSLVDVP 117

Query: 139 STQ--------LRNVKIKSLPCFEQEGMIWIWPGDEPP---------TATIPCLLPPSGF 181
                       + +  KS+     +G I+     E P            +  +   +G 
Sbjct: 118 LESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTIWEGAGG 177

Query: 182 EIHAEIVMELPIEHG---LLLDN-LLDLAHAPFTHTSTFA 217
            +         +      +  +N + D  H  +TH +  +
Sbjct: 178 GMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217

>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 28/168 (16%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
            +  ++ R  DG      N C HR         G  N     C YHGW Y ++G+ + +P
Sbjct: 59  VDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAG--NAKGFVCGYHGWGYGSNGELQSVP 116

Query: 139 STQ--------LRNVKIKSLPCFEQ-EGMIWIWPGDEPPT------ATIPCLLPPSGFEI 183
             +         + + +K +P  E   G I+     E P            L P   +  
Sbjct: 117 FEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSG 176

Query: 184 HAEIV---MELPIEHG---LLLDNLL-DLAHAPFTHTSTFAKGWSVPS 224
             E+V    ++ +         +N + D  H  +TH +    G SV S
Sbjct: 177 GLELVGPPGKVVV-KANWKSFAENFVGDGYHVGWTHAAALRAGQSVFS 223

>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 42/185 (22%)

Query: 61  WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEG 117
           W        L                 VI R +DG      N+C HR   +         
Sbjct: 44  WLYAVPVCQLAKAGSY-TTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVA 102

Query: 118 RIQCPYHGWEYSTDGKCEKMPSTQ---------LRNVKIKSLPCFEQEGMIWI-WPGDEP 167
           ++ CPYH W Y  DGK                 L+ V +++L     +G+I+I      P
Sbjct: 103 KLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNL-----DGLIYICLSDTPP 157

Query: 168 PTATIPCLLPPSGFEIHAEIVMELPIEHG---------------LLLDNLLDLAHAPFTH 212
              T          ++    +    ++                 L+ +N  +  H    H
Sbjct: 158 DFQTF--------AQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNH 209

Query: 213 TSTFA 217
            +   
Sbjct: 210 PALCR 214

>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 32/180 (17%)

Query: 61  WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEG 117
           W     + +L       V         +I RG D +     N C HR   +      N  
Sbjct: 42  WLFAIPACELDKPGSY-VTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNP 100

Query: 118 RIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWI-WPGDEPPTATI 172
           ++ CPYH W Y  DG+                 +K++ C E  G+I+I    + P     
Sbjct: 101 KLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAPDFERF 160

Query: 173 PCLLPPSGFEIHAEIVMELPIEHG---------------LLLDNLLDLAHAPFTHTSTFA 217
                    E+    +    + +                L+ +N  +  H    H +   
Sbjct: 161 --------AEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCR 212

>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE--GR 118
              VA    LK      FD   +  ++ R  D +   + N C+H    L +G  +     
Sbjct: 11  PVRVATLDQLKPGVPTAFDVDGDEVMVVRDGDSV-YAISNLCSHAEAYLDMGVFHAESLE 69

Query: 119 IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWP--GDEPP 168
           I+CP H   +    G    +P        +++         I + P   D   
Sbjct: 70  IECPLHVGRFDVRTGAPTALPCVL----PVRAYDVVVDGTEILVAPKEADHHH 118

>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457

 Score = 68.4 bits (167), Expect = 9e-13
 Identities = 27/172 (15%), Positives = 45/172 (26%), Gaps = 31/172 (18%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
           E+P ++ R KD       N C HR         G  N     C YHGW Y   G    +P
Sbjct: 80  EDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGG--NAKAFTCTYHGWAYDIAGNLVNVP 137

Query: 139 STQ--------------LRNVKIKSLPCFEQEGMIWIWPGDEPP---------TATIPCL 175
             +                +           +G+++     E P            +  +
Sbjct: 138 FEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVM 197

Query: 176 LPPSGFE---IHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPS 224
           L  +      I       +P       +      +   T +        +P 
Sbjct: 198 LDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGLPP 249

>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157

 Score = 64.2 bits (156), Expect = 1e-12
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 16/125 (12%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV----NE 116
              V    D++    +     +   VIF  K      +   C H   PLHLG +     +
Sbjct: 17  SVCVGREEDIRKSERMTAVVHDREVVIFYHKGEY-HAMDIRCYHSGGPLHLGEIEDFNGQ 75

Query: 117 GRIQCPYHGWEYS-TDGKCEKMPST----------QLRNVKIKSLPCFEQEGMIWIWPGD 165
             I CP+H ++ +   G+                   + VK +        G I++    
Sbjct: 76  SCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSK 135

Query: 166 EPPTA 170
           EP   
Sbjct: 136 EPFKC 140

>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 13/106 (12%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-I 119
           +  V    D+ +   +  +       IF     +    Q+ C H    L  G   EG  +
Sbjct: 6   FTRVCDRRDVPEGEALKVESGGTSVAIFNVDGEL-FATQDRCTHGDWSLSDGGYLEGDVV 64

Query: 120 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 161
           +C  H  ++    GK +  P         ++L  F    ++  + +
Sbjct: 65  ECSLHMGKFCVRTGKVKSPPPC-------EALKIFPIRIEDNDVLV 103

>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460

 Score = 65.7 bits (160), Expect = 6e-12
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
           E+P ++ R K+G      N C HR    C    G  N     C YHGW Y T G    +P
Sbjct: 78  EDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGG--NAKSFTCSYHGWAYDTGGNLVSVP 135

Query: 139 STQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPP 168
             +         +           +G+I+     + P
Sbjct: 136 FEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP 172

>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAH-RACPLHLGSVNEGR 118
           W  +    D+  +T V     +E   IFR         + N      +  L  G + E +
Sbjct: 7   WKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQ 66

Query: 119 ----IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 164
               +  P     +  +DG C +          +K      ++G++ +  G
Sbjct: 67  GELWVASPLKKQRFRLSDGLCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112

>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 12/131 (9%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAH-RACPLHLGSVNEGR 118
           W  V    D+   T V     ++   +FR   D     + N     +A  L  G V E +
Sbjct: 4   WTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQ 63

Query: 119 ----IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 173
               +  P     +   DG C +  +       + +       G + I   D        
Sbjct: 64  DDLWVASPLKKQHFRLYDGFCLEDGA-----YSVAAYDTQVTNGNVQISIADSDVAVDNS 118

Query: 174 CLLPPSGFEIH 184
             LP      H
Sbjct: 119 QPLPLEHHHHH 129

>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSV----N 115
              +    DL            E   +F   D     VQ+     +A  +  G V     
Sbjct: 6   KVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDING 65

Query: 116 EGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 161
           E  +  P +   +S   G+C +  +       +K+      +  +  
Sbjct: 66  EMCVASPLYKQHFSLKSGQCLEDEA-----HCLKTWRVTVDDNQVCY 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 63/427 (14%), Positives = 113/427 (26%), Gaps = 125/427 (29%)

Query: 1   MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPR--------KSL----NVSG 48
           +E L     L  +            S  K  +  ++ +L R          L    NV  
Sbjct: 199 LEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 49  P--VQPYN--------TRLKNFWFPVAFSTDLKDDTMVPFD----CFEEP--------WV 86
                 +N        TR K     V         T +  D                 ++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQ----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 87  IFRGKDGIPGCVQNTCAHRAC---PLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 143
             R +D +P               P  L  + E         W+      C+K+  T + 
Sbjct: 312 DCRPQD-LP--------REVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKL--TTII 359

Query: 144 NVKIKSLPCFEQEGMIW---IWPGDEP-PTATIPCLLPPSGFEIHAEIVMEL-------- 191
              +  L   E   M     ++P     PT  +  +           +V +L        
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 192 -PIE-----HGLLLDNLLDLAHAPFTHTS-----TFAKGWSVPSLVKFLTPASGLQGYW- 239
            P E       + L+  + L +    H S        K +    L+        L  Y+ 
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFY 474

Query: 240 ----------DPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATH-----LHQL--- 281
                     +       FR   +    +      K+   +T   A+      L QL   
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLE----QKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 282 --HVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMN 339
             ++C  +  K  RL+  + LDF            L +     + ++   L+  +   M 
Sbjct: 531 KPYIC-DNDPKYERLVNAI-LDF------------LPKIEENLICSKYTDLL--RIALMA 574

Query: 340 NGANVWN 346
               ++ 
Sbjct: 575 EDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
3gke_A	349	DDMC; rieske cluster, non-heme mononuclear iron, o	100.0
3n0q_A	409	Putative aromatic-ring hydroxylating dioxygenase;	100.0
3vca_A	412	Ring-hydroxylating dioxygenase; rieske-type, monon	100.0
1z01_A	446	2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen	100.0
2zyl_A	386	Possible oxidoreductase; KSHA, cholesterol, rieske	100.0
2de6_A	392	Terminal oxygenase component of carbazole; electro	100.0
3gkq_A	389	Terminal oxygenase component of carbazole 1,9A- di	100.0
3gcf_A	394	Terminal oxygenase component of carbazole 1,9A- di	100.0
2gbw_A	454	Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy	100.0
2bmo_A	447	Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni	100.0
2b1x_A	470	Naphthalene dioxygenase large subunit; rieske non-	100.0
3gzx_A	457	Biphenyl dioxygenase subunit alpha; rieskie, non-h	100.0
1uli_A	460	Biphenyl dioxygenase large subunit; alpha3 BETA3 h	100.0
2qpz_A	103	Naphthalene 1,2-dioxygenase system ferredoxin subu	99.95
1fqt_A	112	Rieske-type ferredoxin of biphenyl dioxygenase; 2F	99.95
2i7f_A	108	Ferredoxin component of dioxygenase; rieske ferred	99.95
1vm9_A	111	Toluene-4-monooxygenase system protein C; structur	99.95
2de6_D	115	Ferredoxin component of carbazole; electron transf	99.95
3dqy_A	106	Toluene 1,2-dioxygenase system ferredoxin subunit;	99.95
3gce_A	121	Ferredoxin component of carbazole 1,9A- dioxygenas	99.95
3c0d_A	119	Putative nitrite reductase NADPH (small subunit) o	99.94
2jo6_A	113	Nitrite reductase [NAD(P)H] small subunit; all bet	99.94
2jza_A	130	Nitrite reductase [NAD(P)H] small subunit; ISP dom	99.94
3d89_A	157	Rieske domain-containing protein; CAsp target, rie	99.93
4aiv_A	119	Probable nitrite reductase [NAD(P)H] small subuni;	99.93
1rie_A	129	Rieske iron-sulfur protein; oxidoreductase, cytoch	99.88
1rfs_A	139	Rieske protein; iron-sulfur protein, electron tran	99.87
1g8k_B	133	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	99.86
4aay_B	175	AROB; oxidoreductase, rieske, iron sulfur, molybdo	99.83
3azc_A	133	Cytochrome B6-F complex iron-sulfur subunit; riesk	99.72
3cx5_E	185	Cytochrome B-C1 complex subunit rieske, mitochondr	99.8
2qjy_C	187	Ubiquinol-cytochrome C reductase iron-sulfur SUBU;	99.79
1pp9_E	196	Ubiquinol-cytochrome C reductase iron-sulfur SUBU	99.79
2nwf_A	141	Ubiquinol-cytochrome C reductase iron-sulfur SUBU;	99.78
1nyk_A	165	Rieske iron-sulfur protein; beta barrel, iron sulf	99.78
1vf5_D	179	Rieske iron-sulfur protein; photosynthesis, membra	99.74
1jm1_A	204	Rieske iron-sulfur protein SOXF; electron transpor	99.66

>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*

Probab=100.00  E-value=3.5e-55  Score=427.79  Aligned_cols=303  Identities=23%  Similarity=0.430  Sum_probs=233.2

Q ss_pred             ccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCC
Q 017058           53 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG  132 (378)
Q Consensus        53 ~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G  132 (378)
                      |..++++.|++||+++|| +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|
T Consensus         1 m~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G   79 (349)
T 3gke_A            1 MATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGG   79 (349)
T ss_dssp             -CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTC
T ss_pred             CCcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCC
Confidence            345788999999999999 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCC-cc--ccccccccCCceEEcCeEEEcCCCCC-CC-CCCCCCC--CCCCceEeeEEEEEEecChhhhhhccccc
Q 017058          133 KCEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDL  205 (378)
Q Consensus       133 ~~~~~P~-~~--~~~~~l~~~~v~~~~G~I~v~~~~~~-~~-~~l~~~~--~~~~~~~~~~~~~~~~~nwk~~~EN~~D~  205 (378)
                      +|+.+|. ..  ....+|++|||++++|+|||++++++ +. ..+|++.  ..+++.+. ...++++||||+++||++|+
T Consensus        80 ~~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~  158 (349)
T 3gke_A           80 QCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDL  158 (349)
T ss_dssp             CEEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCG
T ss_pred             CccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhcccc
Confidence            9999995 22  13578999999999999999998764 21 1245442  23567654 45679999999999999999


Q ss_pred             CCCCCcCcccccCCCCCcceeeeecCCCCC-----------Cceec------CCC----CcceecCCeeEEEeeeecCCC
Q 017058          206 AHAPFTHTSTFAKGWSVPSLVKFLTPASGL-----------QGYWD------PYP----IDMEFRPPCMVLSTIGISKPG  264 (378)
Q Consensus       206 ~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~------~~~----~~~~~~~P~~~~~~~~~~~~g  264 (378)
                      ||++++|+++++.........++.....++           ..++.      ...    ..++|.+|+++...+++..+|
T Consensus       159 ~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~g  238 (349)
T 3gke_A          159 GHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPEG  238 (349)
T ss_dssp             GGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             ccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccCC
Confidence            999999999998653211111111111110           00110      001    246788999987777765555


Q ss_pred             CcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHH-hhhHHHHHHHHhhccCCC-
Q 017058          265 KLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA-  342 (378)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~ED~~ile~qq~~l~~g~-  342 (378)
                      ..     .....++.+++.++|+++++||++|.+++||..++   +.+...+..+..+|| .||+.|||+||+++.... 
T Consensus       239 ~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d---~~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~~  310 (349)
T 3gke_A          239 TP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDD---PEMDGVLRSWQAQALVKEDKVVVEAIERRRAYVEA  310 (349)
T ss_dssp             SC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTC---HHHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHHH
T ss_pred             CC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCc---hhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCCc
Confidence            31     11224567789999999999999999999987543   223345567788999 999999999999987632 


Q ss_pred             -CcCCcccCCCHHHHHHHHHHHHH
Q 017058          343 -NVWNLPVGYDKLGVRYRLWRDAL  365 (378)
Q Consensus       343 -~~~~l~~~aD~~~v~~Rr~l~~l  365 (378)
                       ...++++++|+++++||||++++
T Consensus       311 ~~~~~~~~~~D~~~v~~Rr~l~~l  334 (349)
T 3gke_A          311 NGIRPAMLSCDEAAVRVSREIEKL  334 (349)
T ss_dssp             TTCCCCCCGGGHHHHHHHHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHHH
Confidence             22358999999999999999876

>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}

Probab=100.00  E-value=4.6e-48  Score=383.49  Aligned_cols=307  Identities=18%  Similarity=0.186  Sum_probs=224.1

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      ...++|||+++|++|+++||+                 +.|++||+++||+ +|++++++++|++|+|+|+.+|+++||.
T Consensus        19 lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~   81 (409)
T 3n0q_A           19 LDQAFYTDAEVFQTDLQEIFY-----------------KEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFH   81 (409)
T ss_dssp             CCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeec
Confidence            455699999999999999974                 5667999999998 5999999999999999999999999999


Q ss_pred             cCCCCCCCCCCC-ccccCCeeecCCCCeEEcCCCceeecCCcc----ccccccccCCceEEcCeEEEcCCCCCCCCCCCC
Q 017058          100 NTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC  174 (378)
Q Consensus       100 n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~----~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~  174 (378)
                      |+|||||++|+. |.++++.|+||||||+||+||+|+.+|...    ..+.+|++|||++++|+|||+++++++  ++++
T Consensus        82 n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l~~  159 (409)
T 3n0q_A           82 NACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DFER  159 (409)
T ss_dssp             SCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCHH
T ss_pred             CcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--ChHH
Confidence            999999999996 889999999999999999999999999753    246789999999999999999987654  3444


Q ss_pred             CCC----------CCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCCCCC----------------------
Q 017058          175 LLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV----------------------  222 (378)
Q Consensus       175 ~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~----------------------  222 (378)
                      +++          ..++.+.....++++||||+++||++|+||++++|+++++.-...                      
T Consensus       160 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (409)
T 3n0q_A          160 FAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRC  239 (409)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhh
Confidence            321          123444455678899999999999999999999999886532100                      


Q ss_pred             -----cc-ee----------ee-ecCC------CCCCce---ecC---C--CCcceecCCeeEEEeeeecCCCCcCCCcc
Q 017058          223 -----PS-LV----------KF-LTPA------SGLQGY---WDP---Y--PIDMEFRPPCMVLSTIGISKPGKLEGQNT  271 (378)
Q Consensus       223 -----~~-~~----------~~-~~~~------~~~~~~---~~~---~--~~~~~~~~P~~~~~~~~~~~~g~~~~~~~  271 (378)
                           +. ..          +. ..+.      .+...+   ...   .  .....+.+||+.+...             
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~-------------  306 (409)
T 3n0q_A          240 EQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL-------------  306 (409)
T ss_dssp             HHTTCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC-------------
T ss_pred             hccCCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC-------------
Confidence                 00 00          00 0000      000000   000   0  0112355677665442             


Q ss_pred             ccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCCcC-CcccC
Q 017058          272 RQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVW-NLPVG  350 (378)
Q Consensus       272 ~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~~~-~l~~~  350 (378)
                          .+.+.++.+.|+++++|++.+.++...... +...+-.+.+..+.+.|+.||..|||+.|+++.++.... .++..
T Consensus       307 ----pd~~~~~~~~P~~p~~t~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~s~~  381 (409)
T 3n0q_A          307 ----SDHSIVFRVTPISPTETEVTTKWLVHKDAV-EGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYSPT  381 (409)
T ss_dssp             ----SSCEEEEEEEEEETTEEEEEEEEEEETTCC-BTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCCTT
T ss_pred             ----CCEEEEEEEEECCCCeEEEEEEEEEcCccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCC
Confidence                134556778999999999998877532211 100110133445678899999999999999999875422 23334


Q ss_pred             CCHHHHHHHHHHHH
Q 017058          351 YDKLGVRYRLWRDA  364 (378)
Q Consensus       351 aD~~~v~~Rr~l~~  364 (378)
                      .+.++..|.+|+.+
T Consensus       382 ~E~~v~~F~~w~~~  395 (409)
T 3n0q_A          382 QESGVLQFVEWYLS  395 (409)
T ss_dssp             TSHHHHHHHHHHHH
T ss_pred             ccHhHHHHHHHHHH
Confidence            68999999999664

>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A

Probab=100.00  E-value=5.4e-48  Score=383.32  Aligned_cols=307  Identities=16%  Similarity=0.154  Sum_probs=223.1

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      ...++|||+++|++|+++||+                 +.|++||+++||+ +|++++++++|++|+|+|+.+|+++|+.
T Consensus        21 lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~   83 (412)
T 3vca_A           21 LEQPFYTSPEVYALDLQHIFY-----------------KQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFH   83 (412)
T ss_dssp             CCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHHHh-----------------ccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEec
Confidence            445699999999999999984                 5567999999998 5999999999999999999999999999


Q ss_pred             cCCCCCCCCCC-CccccCCeeecCCCCeEEcCCCceeecCCcc----ccccccccCCceEEcCeEEEcCCCCCCCCCCCC
Q 017058          100 NTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC  174 (378)
Q Consensus       100 n~CpHrg~~L~-~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~----~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~  174 (378)
                      |+|||||++|+ .|.++++.|+||||||+||++|+|+.+|...    ..+.+|++|||++++|+|||+++++++  ++++
T Consensus        84 n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l~~  161 (412)
T 3vca_A           84 NSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DFQT  161 (412)
T ss_dssp             SSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCHH
T ss_pred             ccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CHHH
Confidence            99999999998 7899999999999999999999999999753    235789999999999999999987654  3444


Q ss_pred             CCC----------CCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCCCCC----------------------
Q 017058          175 LLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV----------------------  222 (378)
Q Consensus       175 ~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~----------------------  222 (378)
                      +++          ...+.+.....++++||||+++||++|+||++++|+++++.-...                      
T Consensus       162 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
T 3vca_A          162 FAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDR  241 (412)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHH
T ss_pred             HhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhh
Confidence            321          123444455678899999999999999999999999876532110                      


Q ss_pred             ------ccee------ee---ec---CC------CCCCce---ecC---C--CCcceecCCeeEEEeeeecCCCCcCCCc
Q 017058          223 ------PSLV------KF---LT---PA------SGLQGY---WDP---Y--PIDMEFRPPCMVLSTIGISKPGKLEGQN  270 (378)
Q Consensus       223 ------~~~~------~~---~~---~~------~~~~~~---~~~---~--~~~~~~~~P~~~~~~~~~~~~g~~~~~~  270 (378)
                            +...      .+   ..   +.      .+..+.   ...   .  .....+.+||+.+...            
T Consensus       242 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~------------  309 (412)
T 3vca_A          242 CEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL------------  309 (412)
T ss_dssp             HHHTTCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC------------
T ss_pred             hhccCCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC------------
Confidence                  0000      00   00   00      000000   000   0  0112355677665442            


Q ss_pred             cccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCCc-CCccc
Q 017058          271 TRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANV-WNLPV  349 (378)
Q Consensus       271 ~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~~-~~l~~  349 (378)
                           .+.+.++.+.|+++++|++.+.++.........-..+ +.+..+.+.|+.||+.|||+.|+++.++... ..++.
T Consensus       310 -----pd~~~~~~~~P~~~~~t~v~~~~~~~~d~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~~G~~sp  383 (412)
T 3vca_A          310 -----PDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDL-KRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSP  383 (412)
T ss_dssp             -----SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCCT
T ss_pred             -----CCEEEEEEEEECCCCeEEEEEEEEEccccccCccHHH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCC
Confidence                 1344567789999999999988775322110000012 3344567889999999999999999986542 22333


Q ss_pred             CCCHHHHHHHHHHHH
Q 017058          350 GYDKLGVRYRLWRDA  364 (378)
Q Consensus       350 ~aD~~~v~~Rr~l~~  364 (378)
                      ..+.+...|.+|+.+
T Consensus       384 ~~E~~v~~F~~w~~~  398 (412)
T 3vca_A          384 GQESGVMQFVDWYAA  398 (412)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHH
Confidence            358999999999664

>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*

Probab=100.00  E-value=6e-46  Score=373.65  Aligned_cols=310  Identities=17%  Similarity=0.268  Sum_probs=215.6

Q ss_pred             CCCChhhHH--HHhccCCCCcccccCCCCCccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCC
Q 017058           25 PSTSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTC  102 (378)
Q Consensus        25 ~~~s~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~C  102 (378)
                      ..+|+++|+  +|++.||                 ++.|++||+++||++|++++++++|++|+|+| .+|+++|+.|+|
T Consensus        23 ~~~~~~~~~~~~e~~~if-----------------~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~C   84 (446)
T 1z01_A           23 NAKTQSQYQPYKDAAWGF-----------------INHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQC   84 (446)
T ss_dssp             CHHHHGGGHHHHHCTTCB-----------------CSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSC
T ss_pred             cccCHHHhhhhhhhhhhh-----------------hhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcC
Confidence            339999999  9999986                 56778999999999899999999999999999 699999999999


Q ss_pred             CCCCCCCCCcc--ccCCeeecCCCCeEEcC-CCceeecCCccc----cccccccCCceEEcCeEEEcCCCCC----CCCC
Q 017058          103 AHRACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTAT  171 (378)
Q Consensus       103 pHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~----~~~~  171 (378)
                      ||||++|+.|.  ++++.|+||||||+||+ +|+|+.+|+.+.    ...+|++|||++++|+|||++++++    .+++
T Consensus        85 pHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~  164 (446)
T 1z01_A           85 LHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPP  164 (446)
T ss_dssp             TTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCC
T ss_pred             CCCcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCC
Confidence            99999999997  46789999999999997 999999976431    2578999999999999999997642    1111


Q ss_pred             CCCCCC----------------------CCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCC---CCCcce-
Q 017058          172 IPCLLP----------------------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG---WSVPSL-  225 (378)
Q Consensus       172 l~~~~~----------------------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~---~~~~~~-  225 (378)
                      +++.++                      ..++.+. ...++++||||+++||++|+||+ ++|+++++..   ...+.. 
T Consensus       165 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~  242 (446)
T 1z01_A          165 LAHDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGL  242 (446)
T ss_dssp             GGGGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEE
T ss_pred             hhHhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccc
Confidence            211111                      1344443 34568999999999999999999 9999876521   111100 


Q ss_pred             -------eeeecCCCCCCce------------ec--------C----CCCcceecCCeeEEEeeeecCCCCcCCCccccc
Q 017058          226 -------VKFLTPASGLQGY------------WD--------P----YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC  274 (378)
Q Consensus       226 -------~~~~~~~~~~~~~------------~~--------~----~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~  274 (378)
                             ...+....+..+.            +.        .    ....+.+.+|++++...   .|.          
T Consensus       243 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~---~p~----------  309 (446)
T 1z01_A          243 LPTSDDCIAVVEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN---WPE----------  309 (446)
T ss_dssp             EECSTTSEEEECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET---CSS----------
T ss_pred             cccCCCceeEEEecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec---cCC----------
Confidence                   0011100000010            00        0    00122344666553321   110          


Q ss_pred             cceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHH----HHHHH-HhHHHhhhHHHHHHHHhhccCCCC-cCCcc
Q 017058          275 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY----LWRHF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLP  348 (378)
Q Consensus       275 ~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~V~~ED~~ile~qq~~l~~g~~-~~~l~  348 (378)
                       ..+.++..++|+++++|++++.+++++... .....+..    .+... ...|..||+.++|+||+++..+.. ..+++
T Consensus       310 -~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~~l  387 (446)
T 1z01_A          310 -EHVVQYEWYVPITDDTHEYWEILVRVCPTD-EDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQL  387 (446)
T ss_dssp             -TTCEEEEEEEESSSSEEEEEEEEEEECCSH-HHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCC
T ss_pred             -CCeEEEEEEEECCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccccC
Confidence             123456788999999999988777654311 11110001    01111 234779999999999999877543 34688


Q ss_pred             cCCCHHHHHHHHHHHHHHcCC
Q 017058          349 VGYDKLGVRYRLWRDALEKGA  369 (378)
Q Consensus       349 ~~aD~~~v~~Rr~l~~l~~g~  369 (378)
                      +.+|+++++||||++++..+.
T Consensus       388 ~~~D~~i~~~Rr~l~~~~~~~  408 (446)
T 1z01_A          388 VATDISPITWRKLASRWNRGI  408 (446)
T ss_dssp             CGGGHHHHHHHHHHHHHCSCB
T ss_pred             chhhHHHHHHHHHHHHHHhhc
Confidence            899999999999999886554

>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.2e-46  Score=366.49  Aligned_cols=300  Identities=16%  Similarity=0.281  Sum_probs=211.0

Q ss_pred             cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCc
Q 017058           54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK  133 (378)
Q Consensus        54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~  133 (378)
                      +..|.+.|++||+++||++|++++++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|+
T Consensus        19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~   98 (386)
T 2zyl_A           19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR   98 (386)
T ss_dssp             CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred             chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCccc--cccccccCCceEEcCeEEEcCCCCC-CC---CCCCCCCC--CCCceEeeEEEEEEe-cChhhhhhcccc
Q 017058          134 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLLD  204 (378)
Q Consensus       134 ~~~~P~~~~--~~~~l~~~~v~~~~G~I~v~~~~~~-~~---~~l~~~~~--~~~~~~~~~~~~~~~-~nwk~~~EN~~D  204 (378)
                      |+.+|..+.  ...+|++|||++++|+|||+++++. ++   ..+|.+..  ..++.......++++ ||||+++||++|
T Consensus        99 ~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D  178 (386)
T 2zyl_A           99 CKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTD  178 (386)
T ss_dssp             EEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGGC
T ss_pred             ccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhccc
Confidence            999998542  2468999999999999999997642 21   12343321  234443344567889 999999999999


Q ss_pred             cCCCCCcCcccccCC---CCCcceeeee--cCCCCCC--c-eecC--CCCcceecCCeeEEEeeeecCCCCcCCCccccc
Q 017058          205 LAHAPFTHTSTFAKG---WSVPSLVKFL--TPASGLQ--G-YWDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC  274 (378)
Q Consensus       205 ~~H~~~vH~~~~~~~---~~~~~~~~~~--~~~~~~~--~-~~~~--~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~  274 (378)
                      +||++++|+++....   ..........  .......  + .+..  ......|..|+.+++.+....++.         
T Consensus       179 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~g~---------  249 (386)
T 2zyl_A          179 MAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNY---------  249 (386)
T ss_dssp             STHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEETTE---------
T ss_pred             ccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeeccCCc---------
Confidence            999999999753210   0000000110  0000000  0 0000  001235667887665544332221         


Q ss_pred             cceeeEEEEEecCCCCeEEEEEEeeccchhhcc--CchhHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCCcCCcccCCC
Q 017058          275 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK--HVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYD  352 (378)
Q Consensus       275 ~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~~~~l~~~aD  352 (378)
                      ......++.++|+++++|++++.+++++.....  ....+...+..+..+++.||+.|+|+||+...      .++...|
T Consensus       250 ~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~~~------p~~~~~D  323 (386)
T 2zyl_A          250 KSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDN------PLLVEED  323 (386)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS------CCCCGGG
T ss_pred             ceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccccC------CccCccc
Confidence            112344566799999999999988765432111  11222233445678899999999998765422      2567889


Q ss_pred             HHHHHHHHHHHHHHcC
Q 017058          353 KLGVRYRLWRDALEKG  368 (378)
Q Consensus       353 ~~~v~~Rr~l~~l~~g  368 (378)
                      +++++||||++++-..
T Consensus       324 ~~~~~fRrw~~~~~~~  339 (386)
T 2zyl_A          324 GAVYQLRRWYEQFYVD  339 (386)
T ss_dssp             CSHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHHhCCc
Confidence            9999999999986443

>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*

Probab=100.00  E-value=1.1e-45  Score=366.11  Aligned_cols=296  Identities=20%  Similarity=0.337  Sum_probs=204.4

Q ss_pred             cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc--cCCeeecCCCCeEEcC-CC
Q 017058           56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYST-DG  132 (378)
Q Consensus        56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~--~~~~l~CpyHgw~f~~-~G  132 (378)
                      .|++.|++||+++||++|++++++++|++|+|+|+ +|+++|+.|+|||||++|+.|.+  +++.|+||||||+||+ +|
T Consensus        24 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~G  102 (392)
T 2de6_A           24 GFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDG  102 (392)
T ss_dssp             CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTC
T ss_pred             hhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCCC
Confidence            45788999999999998999999999999999995 99999999999999999999975  4689999999999997 99


Q ss_pred             ceeecCCccc----cccccccCCceEEcCeEEEcCCCCCCCCCCCCCC----CCCCceEeeEEEEEEecChhhhhhcccc
Q 017058          133 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLDNLLD  204 (378)
Q Consensus       133 ~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~nwk~~~EN~~D  204 (378)
                      +|+.+|..+.    ...+|++|||++++|+|||++++++++ ++++.+    ...++... ...++++||||+++||++|
T Consensus       103 ~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D  180 (392)
T 2de6_A          103 VLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-PLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVENGFD  180 (392)
T ss_dssp             BEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCC-CGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHHHHHC
T ss_pred             ccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCC-ChhHhccccccCCCeEEE-EEEEEEecChHhhhHhcch
Confidence            9999986432    357899999999999999999764322 232211    12456553 3567899999999999999


Q ss_pred             cCCCCCcCcccccCCCC---Ccc---------eeeeecCCC--CCCceec---C------------------------CC
Q 017058          205 LAHAPFTHTSTFAKGWS---VPS---------LVKFLTPAS--GLQGYWD---P------------------------YP  243 (378)
Q Consensus       205 ~~H~~~vH~~~~~~~~~---~~~---------~~~~~~~~~--~~~~~~~---~------------------------~~  243 (378)
                      +||+ ++|+++++....   .+.         .........  +..++..   .                        ..
T Consensus       181 ~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~  259 (392)
T 2de6_A          181 PSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVA  259 (392)
T ss_dssp             GGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECEECSBCCC
T ss_pred             hhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeeccccCCcccc
Confidence            9999 999987643110   000         000000000  0001000   0                        01


Q ss_pred             CcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCch-hHHH---HHHH-
Q 017058          244 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQY---LWRH-  318 (378)
Q Consensus       244 ~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~-~~~~---~~~~-  318 (378)
                      ....+..|+.....   ..|+           ..+.++..++|+++++|++++.+++++... .... +...   .+.. 
T Consensus       260 ~~~~~~~P~~~~~~---~~p~-----------~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  324 (392)
T 2de6_A          260 NDISIWLPGVLKVN---PFPN-----------PDMMQFEWYVPIDENTHYYFQTLGKPCAND-EERKKYEQEFESKWKPM  324 (392)
T ss_dssp             CEEEEETTTEEEEE---SCSS-----------TTCEEEEEEEEEETTEEEEEEEEEEECSSH-HHHHHHHHHHHHTHHHH
T ss_pred             eeEEEecccceecc---ccCC-----------CCEEEEEEEeecCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHHHHh
Confidence            11223345443211   0111           123456678999999999988777655321 1111 1111   1111 


Q ss_pred             HHhHHHhhhHHHHHHHHhhccCCCC-cCCcccCCCHHHHHHHHHHHHHHcCCC
Q 017058          319 FAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAK  370 (378)
Q Consensus       319 ~~~~V~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rr~l~~l~~g~~  370 (378)
                      ....|+.||+.|+|+||+.+..+.. ..+++.++|+++++||||++++..+..
T Consensus       325 ~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~~~~D~~~~~~Rr~l~~~~~~~~  377 (392)
T 2de6_A          325 ALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQ  377 (392)
T ss_dssp             TTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCSCBC
T ss_pred             hccCCChhhHHHHHhhhhhhhccccCccceecchhHHHHHHHHHHHHHhhhhc
Confidence            1245788999999999998876543 456888999999999999999876654

>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}

Probab=100.00  E-value=3.8e-42  Score=334.58  Aligned_cols=298  Identities=19%  Similarity=0.344  Sum_probs=213.4

Q ss_pred             cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcC-CC
Q 017058           56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG  132 (378)
Q Consensus        56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G  132 (378)
                      +|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||+ +|
T Consensus        27 if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG  105 (389)
T 3gkq_A           27 GFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNG  105 (389)
T ss_dssp             CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEETTTC
T ss_pred             hhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEECCCC
Confidence            4578889999999999999999999999999999 69999999999999999999986  56889999999999998 99


Q ss_pred             ceeecCCccc----cccccccCCceEEcCeEEEcCCCCCCCCCCCCCC----CCCCceEeeEEEEEEecChhhhhhcccc
Q 017058          133 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLDNLLD  204 (378)
Q Consensus       133 ~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~nwk~~~EN~~D  204 (378)
                      +|+.+|..+.    ...+|++|||++++|+|||+++++++ +++++.+    ...++.+.. ..++++||||+++||++|
T Consensus       106 ~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~EN~lD  183 (389)
T 3gkq_A          106 KLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVENGFD  183 (389)
T ss_dssp             BEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHHHHTC
T ss_pred             CeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEEe-EEEEEecCchhhHHhcch
Confidence            9999987542    35789999999999999999975432 2233322    124555443 467899999999999999


Q ss_pred             cCCCCCcCcccccCC---CCCcc---------eeeeecCCCCCCceecCCC---------------------------Cc
Q 017058          205 LAHAPFTHTSTFAKG---WSVPS---------LVKFLTPASGLQGYWDPYP---------------------------ID  245 (378)
Q Consensus       205 ~~H~~~vH~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------------~~  245 (378)
                      +||+ ++|+++++..   ...+.         ......+...++|.++.+.                           ..
T Consensus       184 ~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (389)
T 3gkq_A          184 AGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGSKMVAIS  262 (389)
T ss_dssp             SGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCSBCCCCE
T ss_pred             hchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCCccccee
Confidence            9999 9999987631   11110         1112222233444333210                           11


Q ss_pred             ceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhH---HHHHHH-HHh
Q 017058          246 MEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFM---QYLWRH-FAE  321 (378)
Q Consensus       246 ~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~  321 (378)
                      ..+..|++.... .+..             .+++++...+|+++++++++..+.+......+...+-   +..|.. ..+
T Consensus       263 ~s~~lP~v~~v~-~~~~-------------~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (389)
T 3gkq_A          263 ISVWLPGVLKVD-PFPD-------------PTLTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWVELALN  328 (389)
T ss_dssp             EEEETTTEEEEE-SCSS-------------TTCEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHHHHTTT
T ss_pred             EEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHHHHhhc
Confidence            233344443222 1111             2567777789999999999987765443221111111   112222 246


Q ss_pred             HHHhhhHHHHHHHHhhccCCC-CcCCcccCCCHHHHHHHHHHHHHHcCCCC
Q 017058          322 QVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGAKQ  371 (378)
Q Consensus       322 ~V~~ED~~ile~qq~~l~~g~-~~~~l~~~aD~~~v~~Rr~l~~l~~g~~~  371 (378)
                      .+.++|...-|+.|+-+..+. ...|.....|..+|++||...+..+|...
T Consensus       329 ~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~wr~~~~~~~~~~~~  379 (389)
T 3gkq_A          329 GFNDDDILARRSMEPFYADDRGWREEVLFESDRAIIEWRRLASQYNRGIQT  379 (389)
T ss_dssp             TTTHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHHHHHCSCBCC
T ss_pred             cccchhHHHHHHHHHhhccCCCCChhhccCcchhHHHHHHHHHHhccccCC
Confidence            788999999999998887642 23368889999999999999999888654

>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}

Probab=100.00  E-value=9.6e-42  Score=332.66  Aligned_cols=299  Identities=20%  Similarity=0.323  Sum_probs=211.5

Q ss_pred             cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcC-CC
Q 017058           56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG  132 (378)
Q Consensus        56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G  132 (378)
                      .|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||+ +|
T Consensus        30 if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG  108 (394)
T 3gcf_A           30 GFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDG  108 (394)
T ss_dssp             CEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEETTTC
T ss_pred             hhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEECCCC
Confidence            4678899999999999999999999999999999 69999999999999999999986  46889999999999998 89


Q ss_pred             ceeecCCccc----cccccccCCceEEcCeEEEcCCCCCCCCCCCCCCC----CCCceEeeEEEEEEecChhhhhhcccc
Q 017058          133 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLDNLLD  204 (378)
Q Consensus       133 ~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~nwk~~~EN~~D  204 (378)
                      +|+.+|..+.    ...+|++|||++++|+|||+++++++ +++++.++    ..++.+. ....+++||||+++||++|
T Consensus       109 ~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~-~~~~~i~~NWK~~~EN~lD  186 (394)
T 3gcf_A          109 RLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLL-GIRRTVQSNWRLGVENGFD  186 (394)
T ss_dssp             BEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHHHHSC
T ss_pred             ceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEE-eEEEEEecCchhhHhhccc
Confidence            9999987542    35789999999999999999976432 23333221    2445543 3467899999999999999


Q ss_pred             cCCCCCcCcccccCC---CCCccee--------eeecCCCCCCceecCC-----------------------------CC
Q 017058          205 LAHAPFTHTSTFAKG---WSVPSLV--------KFLTPASGLQGYWDPY-----------------------------PI  244 (378)
Q Consensus       205 ~~H~~~vH~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~-----------------------------~~  244 (378)
                      +||+ ++|+++++..   ...+..+        ... +....+|.++.+                             ..
T Consensus       187 ~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~  264 (394)
T 3gcf_A          187 TTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEKKVAA  264 (394)
T ss_dssp             SSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCSSCBCCCS
T ss_pred             cchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccccccccccCcccccce
Confidence            9999 9999988641   1111110        111 112223322110                             01


Q ss_pred             cceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhH---HHHHHH-HH
Q 017058          245 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFM---QYLWRH-FA  320 (378)
Q Consensus       245 ~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~---~~~~~~-~~  320 (378)
                      ...+..|++.... .+..             .+++++...+|+++++++++..+.+......+...|-   +..|.. ..
T Consensus       265 ~~s~~lP~v~~v~-~~p~-------------~~~~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (394)
T 3gcf_A          265 QVSVWLPGVLKVD-PFPD-------------PTLIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWRDDAL  330 (394)
T ss_dssp             EEEEETTTEEEEE-SCSS-------------TTCEEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHHHHTT
T ss_pred             eEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhHHHhh
Confidence            1223344433222 1111             2567777789999999999977765443221111111   112221 24


Q ss_pred             hHHHhhhHHHHHHHHhhccCCC-CcCCcccCCCHHHHHHHHHHHHHHcCCCCCC
Q 017058          321 EQVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGAKQLP  373 (378)
Q Consensus       321 ~~V~~ED~~ile~qq~~l~~g~-~~~~l~~~aD~~~v~~Rr~l~~l~~g~~~~p  373 (378)
                      +.++++|...-|+.|+-+..+. ...|.....|..++++||...+..+|...-|
T Consensus       331 ~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~~r~~~~~~~~~~~~~~  384 (394)
T 3gcf_A          331 HGFNDDDVWAREAQQEFYGERDGWSKEQLFPPDMCIVKWRTLASERGRGVRAAR  384 (394)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHSCHHHHCCCCGGGHHHHHHHHHHHHHCSEECC--
T ss_pred             cccchhhHHHHHHHHHhhcccCCCChhhccCcchhHHHHHHHHHHhcccCCCCC
Confidence            6788999999999998877643 2346888999999999999999988876544

>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A

Probab=100.00  E-value=1.7e-41  Score=342.20  Aligned_cols=178  Identities=18%  Similarity=0.305  Sum_probs=151.5

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      ...++|||+++|++|+++||.                 +.|++||+++||+ +|++++++++|++|+|+|+.+|+++|+.
T Consensus        15 ~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~   77 (454)
T 2gbw_A           15 QSRQVFWDEDVYALEIERIFS-----------------RAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFI   77 (454)
T ss_dssp             EEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             cCHHHcCCHHHHHHHHHHHhh-----------------cCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEe
Confidence            556799999999999999984                 4567999999998 6999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecCCccc--------cccccccCCceEEcCeEEEcCCCCCCCC
Q 017058          100 NTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPPTA  170 (378)
Q Consensus       100 n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~~--------~~~~l~~~~v~~~~G~I~v~~~~~~~~~  170 (378)
                      |+|||||++|+.|.. +++.|+||||||+||++|+|+.+|....        .+.+|++|+|++++|+|||+++++++  
T Consensus        78 n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p--  155 (454)
T 2gbw_A           78 NSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP--  155 (454)
T ss_dssp             SSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC--
T ss_pred             ccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC--
Confidence            999999999998765 6789999999999999999999997531        24679999999999999999987654  


Q ss_pred             CCCCCCC-------------CCCceEe-eEEEEEEecChhhhhhcc-cccCCCCCcCccccc
Q 017058          171 TIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA  217 (378)
Q Consensus       171 ~l~~~~~-------------~~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~  217 (378)
                      +++++++             ..++.+. ....++++||||+++||+ +|+||++++|..+++
T Consensus       156 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~  217 (454)
T 2gbw_A          156 SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS  217 (454)
T ss_dssp             CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred             CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence            3444322             1335544 355678999999999999 799999999976654

>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*

Probab=100.00  E-value=3.6e-41  Score=339.22  Aligned_cols=179  Identities=20%  Similarity=0.295  Sum_probs=152.0

Q ss_pred             cc-CCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEE
Q 017058           21 TC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV   98 (378)
Q Consensus        21 ~~-~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~   98 (378)
                      .. .++|||+++|++|+++||.                 +.|++||+++||+ +|++++++++|++|+|+|+.+|+++||
T Consensus        13 ~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~   75 (447)
T 2bmo_A           13 TQKLLIHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAF   75 (447)
T ss_dssp             EEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             CCccceeCCHHHHHHHHHHhhc-----------------cCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEE
Confidence            45 6799999999999999984                 5577999999998 699999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecCCcc--------ccccccccCC-ceEEcCeEEEcCCCCCC
Q 017058           99 QNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEPP  168 (378)
Q Consensus        99 ~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~--------~~~~~l~~~~-v~~~~G~I~v~~~~~~~  168 (378)
                      .|+|||||++|+.|.. +++.|+||||||+||+||+|+.+|..+        ..+.+|++|| |++++|+|||+++++++
T Consensus        76 ~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~  155 (447)
T 2bmo_A           76 LNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAP  155 (447)
T ss_dssp             ESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCC
T ss_pred             eccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCC
Confidence            9999999999999865 578999999999999999999999743        2346899999 99999999999987654


Q ss_pred             CCCCCCCCC------------CCCceEe-eEEEEEEecChhhhhhcc-cccCCCCCcCcccccC
Q 017058          169 TATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK  218 (378)
Q Consensus       169 ~~~l~~~~~------------~~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~~  218 (378)
                        +++++++            ..++.+. ....++++||||+++||+ +|+||++++|..+++.
T Consensus       156 --~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~  217 (447)
T 2bmo_A          156 --PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA  217 (447)
T ss_dssp             --CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred             --CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence              3444322            2245544 255678999999999999 7999999999776653

>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A

Probab=100.00  E-value=1.2e-40  Score=337.24  Aligned_cols=178  Identities=20%  Similarity=0.349  Sum_probs=149.6

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      ...++|||+++|++|+++||.                 +.|++||+++||++ |++++++++|++|+|+|+.+|+++||.
T Consensus        23 lp~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~   85 (470)
T 2b1x_A           23 VPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHL   85 (470)
T ss_dssp             EEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHHhh-----------------cCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEe
Confidence            567799999999999999974                 55679999999985 889999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcccc-CCeeecCCCCeEEcCCCceeecCCccc--------cccccccCC-ceEEcCeEEEcCCCCCCC
Q 017058          100 NTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGDEPPT  169 (378)
Q Consensus       100 n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~--------~~~~l~~~~-v~~~~G~I~v~~~~~~~~  169 (378)
                      |+|||||++|+.|.+. ++.|+||||||+||+||+|+.+|..+.        .+.+|.++| |++++|+|||+++++++ 
T Consensus        86 n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~-  164 (470)
T 2b1x_A           86 NACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHAD-  164 (470)
T ss_dssp             SSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCC-
T ss_pred             cccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCC-
Confidence            9999999999998755 479999999999999999999998531        246788885 56679999999987654 


Q ss_pred             CCCCCCCC-------------CCCceEee-EEEEEEecChhhhhhcc-cccCCCCCcCccccc
Q 017058          170 ATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA  217 (378)
Q Consensus       170 ~~l~~~~~-------------~~~~~~~~-~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~  217 (378)
                       +++++++             ..++++.. ...++++||||+++||+ +|+||++++|++++.
T Consensus       165 -~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~  226 (470)
T 2b1x_A          165 -SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE  226 (470)
T ss_dssp             -CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred             -CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence             3443322             23455443 45678999999999999 999999999998764

>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*

Probab=100.00  E-value=2.7e-40  Score=331.67  Aligned_cols=179  Identities=18%  Similarity=0.271  Sum_probs=153.5

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      .+.+.|||+++|++|+++||+                 +.|++||+++||+ +|++++++++|++|+|+|+.||+++||.
T Consensus        35 ~~~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~   97 (457)
T 3gzx_A           35 LDARIYADQDLYQLELERVFG-----------------RSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFL   97 (457)
T ss_dssp             EEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEe
Confidence            556799999999999999984                 5567999999998 5999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCcc--------------ccccccccCCceEEcCeEEEcCC
Q 017058          100 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWIWPG  164 (378)
Q Consensus       100 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~--------------~~~~~l~~~~v~~~~G~I~v~~~  164 (378)
                      |+|||||++|+.|. ++++.|+||||||+||++|+|+.+|..+              ....+|++|+|++++|+||||++
T Consensus        98 n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~  177 (457)
T 3gzx_A           98 NQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWD  177 (457)
T ss_dssp             SCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESC
T ss_pred             CcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecC
Confidence            99999999999985 6789999999999999999999999853              12467899999999999999998


Q ss_pred             CCCCCCCCCCCCCC-------------CCceEe-eEEEEEEecChhhhhhcc-cccCCCC-CcCcccccC
Q 017058          165 DEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAK  218 (378)
Q Consensus       165 ~~~~~~~l~~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~-~vH~~~~~~  218 (378)
                      ++++  ++++++++             .++++. ....++++||||+++||+ +|+||++ ++|.++++.
T Consensus       178 ~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~  245 (457)
T 3gzx_A          178 PEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLA  245 (457)
T ss_dssp             TTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHH
T ss_pred             CCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhhc
Confidence            8754  34454431             234544 246788999999999999 8999999 999987653

>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A

Probab=100.00  E-value=2.2e-39  Score=327.08  Aligned_cols=177  Identities=19%  Similarity=0.293  Sum_probs=149.0

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      ...+.|||+++|++|+++||.                 +.|++||+++||+ +|+++++++++++|+|+|+.+|+++||.
T Consensus        33 ~p~~~y~d~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~   95 (460)
T 1uli_A           33 LDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFL   95 (460)
T ss_dssp             ECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHhhh-----------------cCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEe
Confidence            556699999999999999974                 5567999999998 5889999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecCCcc-------ccccccccCCceEEcCeEEEcCCCCCCCCC
Q 017058          100 NTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTAT  171 (378)
Q Consensus       100 n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~-------~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~  171 (378)
                      |+|||||++|+.|.. +++.|+||||||+||+||+|+.+|...       ..+.+|++|+|++++|+|||+++++++  +
T Consensus        96 n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~  173 (460)
T 1uli_A           96 NQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP--D  173 (460)
T ss_dssp             SCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC--C
T ss_pred             eeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC--C
Confidence            999999999998765 568999999999999999999999753       124679999999999999999987654  3


Q ss_pred             CCCCCCC-------------CCceE-eeEEEEEEecChhhhhhcc-cccCCC-CCcCcccc
Q 017058          172 IPCLLPP-------------SGFEI-HAEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF  216 (378)
Q Consensus       172 l~~~~~~-------------~~~~~-~~~~~~~~~~nwk~~~EN~-~D~~H~-~~vH~~~~  216 (378)
                      +++++++             .++.+ .....++++||||+++||+ +|+||+ .++|..++
T Consensus       174 l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~  234 (460)
T 1uli_A          174 LDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI  234 (460)
T ss_dssp             HHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred             HHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence            3333221             23443 2345678999999999999 799999 69998665

>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}

Probab=99.95  E-value=2e-28  Score=197.42  Aligned_cols=100  Identities=19%  Similarity=0.325  Sum_probs=94.6

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecC
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP  138 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P  138 (378)
                      .|+.||.++||++|+++.+++.|++++|+| .+|+++|+.|+|||||++|+.|.+.++.|+||||||+||+ +|+|+.+|
T Consensus         3 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P   81 (103)
T 2qpz_A            3 KWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAP   81 (103)
T ss_dssp             CEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETT
T ss_pred             ccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence            599999999999999999999999999999 7999999999999999999999988999999999999997 99999999


Q ss_pred             CccccccccccCCceEEcCeEEEcCC
Q 017058          139 STQLRNVKIKSLPCFEQEGMIWIWPG  164 (378)
Q Consensus       139 ~~~~~~~~l~~~~v~~~~G~I~v~~~  164 (378)
                      ..    .+|++|||++++|+|||+++
T Consensus        82 ~~----~~L~~~~v~~~~g~v~v~~~  103 (103)
T 2qpz_A           82 VT----QNIKTYPVKIENLRVMIDLS  103 (103)
T ss_dssp             CC----SCCCEECEEEETTEEEEECC
T ss_pred             CC----CCCCEEeEEEECCEEEEEcC
Confidence            74    36999999999999999874

>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*

Probab=99.95  E-value=5.2e-28  Score=198.04  Aligned_cols=102  Identities=18%  Similarity=0.243  Sum_probs=95.7

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCc-cccCCeeecCCCCeEEcC-CCceeec
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEKM  137 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g-~~~~~~l~CpyHgw~f~~-~G~~~~~  137 (378)
                      .|+.||.++||++|+++.+++.|++|+|+|. +|+++|+.|+|||||++|+.| .++++.|+||||||+||+ ||+|+.+
T Consensus         5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~   83 (112)
T 1fqt_A            5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP   83 (112)
T ss_dssp             CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred             ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence            5999999999999999999999999999998 999999999999999999999 888899999999999998 8999999


Q ss_pred             CCccccccccccCCceEEcCeEEEcCCCC
Q 017058          138 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       138 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                      |..    .+|++|||++++|+|||+++++
T Consensus        84 P~~----~~L~~~~v~~~~g~v~v~~~~~  108 (112)
T 1fqt_A           84 PPC----EALKIFPIRIEDNDVLVDFEAG  108 (112)
T ss_dssp             SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred             CCC----CCccEEEEEEECCEEEEEeccc
Confidence            974    3699999999999999998654

>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}

Probab=99.95  E-value=1.4e-28  Score=200.03  Aligned_cols=102  Identities=24%  Similarity=0.380  Sum_probs=94.8

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCee-EEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeec
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  137 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~-vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~  137 (378)
                      .|+.||.++||++|+.+.+++.|++ ++|+|. +|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+.+
T Consensus         3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~   81 (108)
T 2i7f_A            3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF   81 (108)
T ss_dssp             CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred             ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence            5999999999999999999999999 999998 999999999999999999999988999999999999996 9999999


Q ss_pred             CCccccccccccCCceEEcCeEEEcCCCC
Q 017058          138 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       138 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                      |..    .+|++|+|++++|+|||+++++
T Consensus        82 P~~----~~L~~~~v~~~~g~v~v~~~~~  106 (108)
T 2i7f_A           82 PCQ----IPIKTYPVTIEDGWVCIDQPKE  106 (108)
T ss_dssp             TCC----SCCCEECEEEETTEEEEECC--
T ss_pred             CCC----CCccEEeEEEECCEEEEeCCCC
Confidence            974    3699999999999999998764

>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A

Probab=99.95  E-value=4.2e-28  Score=198.26  Aligned_cols=104  Identities=19%  Similarity=0.285  Sum_probs=96.1

Q ss_pred             ceEEEEecCCCCCCCeEEEEE-CCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeec
Q 017058           60 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  137 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~-~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~  137 (378)
                      .|+.||.++||++|+.+.+++ .|++++|+|..+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+. 
T Consensus         1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~-   79 (111)
T 1vm9_A            1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-   79 (111)
T ss_dssp             CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred             CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence            499999999999999999999 99999999988999999999999999999999988999999999999998 599998 


Q ss_pred             CCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058          138 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       138 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      |..    .+|++|+|++++|+|||+++++++
T Consensus        80 p~~----~~L~~~~v~~~~g~v~v~~~~~~~  106 (111)
T 1vm9_A           80 PDD----AALAEYPVEVKGDDIYVSTKGILP  106 (111)
T ss_dssp             SSS----CBCCEECEEEETTEEEECCTTCCC
T ss_pred             CCc----CCcCEEEEEEECCEEEEeccCcCC
Confidence            653    479999999999999999977643

>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*

Probab=99.95  E-value=2e-28  Score=201.41  Aligned_cols=104  Identities=21%  Similarity=0.463  Sum_probs=96.2

Q ss_pred             cCceEEEEecCCCCCCCeEEEEECCe-eEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCcee
Q 017058           58 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE  135 (378)
Q Consensus        58 ~~~W~~v~~~~el~~g~~~~~~~~g~-~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~  135 (378)
                      .+.|+.||.++||++|+++.+++.|+ +|+|+|. +|+++|+.|+|||||++|+.|.+.++.|+||||||+||+ +|+|+
T Consensus         2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~   80 (115)
T 2de6_D            2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA   80 (115)
T ss_dssp             --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred             CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence            36799999999999999999999999 9999998 999999999999999999999988999999999999996 99999


Q ss_pred             ecCCccccccccccCCceEEcCeEEEcCCCC
Q 017058          136 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       136 ~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                      .+|..    .+|++|||++++|+|||++++.
T Consensus        81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~  107 (115)
T 2de6_D           81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK  107 (115)
T ss_dssp             ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred             CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence            99974    3699999999999999998654

>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*

Probab=99.95  E-value=2.9e-28  Score=197.58  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=95.4

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecC
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP  138 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P  138 (378)
                      .|+.||.++||++|+.+.+++.|++|+|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+.+|
T Consensus         1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P   79 (106)
T 3dqy_A            1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP   79 (106)
T ss_dssp             CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred             CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence            599999999999999999999999999999 5999999999999999999999999999999999999995 99999999


Q ss_pred             CccccccccccCCceEEcCeEEEcCCCC
Q 017058          139 STQLRNVKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       139 ~~~~~~~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                      +.    .+|++||+++++|.|||++++.
T Consensus        80 ~~----~~L~~~~v~~~~g~v~v~~~~~  103 (106)
T 3dqy_A           80 AC----KPIKVFPIKVEGDEVHVDLDNG  103 (106)
T ss_dssp             CC----SCCCEECEEEETTEEEECGGGC
T ss_pred             CC----CCccEEEEEEECCEEEEEcccc
Confidence            74    3699999999999999998653

>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}

Probab=99.95  E-value=2.5e-27  Score=196.56  Aligned_cols=104  Identities=19%  Similarity=0.312  Sum_probs=95.2

Q ss_pred             CceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCc--cccCCeeecCCCCeEEcC-CCcee
Q 017058           59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCE  135 (378)
Q Consensus        59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g--~~~~~~l~CpyHgw~f~~-~G~~~  135 (378)
                      ..|+.||.++||++|+.+.+++.|++|+|+|. +|+++|+.|+|||||++|+.|  .++++.|+||||||+||+ +|+|+
T Consensus         9 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~   87 (121)
T 3gce_A            9 STPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPT   87 (121)
T ss_dssp             CCCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEE
T ss_pred             cCcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEe
Confidence            35999999999999999999999999999996 999999999999999999999  888999999999999995 99999


Q ss_pred             ecCCccccccccccCCceEEcCeEEEcCCCCC
Q 017058          136 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEP  167 (378)
Q Consensus       136 ~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~  167 (378)
                      .+|+.    .+|++|||++++|.|||+++.+.
T Consensus        88 ~~P~~----~~L~~~~v~v~~g~V~v~~~~~~  115 (121)
T 3gce_A           88 ALPCV----LPVRAYDVVVDGTEILVAPKEAD  115 (121)
T ss_dssp             ETTCC----SCCCBCCEEEETTEEEECCC---
T ss_pred             CCCCc----CCcceEEEEEECCEEEEEECccc
Confidence            99985    36999999999999999987654

>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3

Probab=99.94  E-value=1.3e-27  Score=197.76  Aligned_cols=103  Identities=14%  Similarity=0.016  Sum_probs=95.3

Q ss_pred             CceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCC-CCCCccccCC----eeecCCCCeEEcC-CC
Q 017058           59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG  132 (378)
Q Consensus        59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~-~L~~g~~~~~----~l~CpyHgw~f~~-~G  132 (378)
                      ..|+.||.++||++|+++.+++.|++|+|+|..+|+++|+.|+|||||+ +|+.|.+.++    .|+||||||+||+ ||
T Consensus         4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG   83 (119)
T 3c0d_A            4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG   83 (119)
T ss_dssp             CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred             CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence            5699999999999999999999999999999889999999999999999 8999987543    8999999999998 99


Q ss_pred             ceeecCCccccccccccCCceEEcCeEEEcCCCC
Q 017058          133 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       133 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                      +|+.+|.     .+|++|||++++|.|||++++.
T Consensus        84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~  112 (119)
T 3c0d_A           84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL  112 (119)
T ss_dssp             BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred             cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence            9999997     3699999999999999998654

>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3

Probab=99.94  E-value=2.5e-27  Score=194.23  Aligned_cols=100  Identities=18%  Similarity=0.203  Sum_probs=92.4

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCC-cEEEEccCCCCCCC-CCCCcccc---CC-eeecCCCCeEEcC-CC
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---EG-RIQCPYHGWEYST-DG  132 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G-~~~a~~n~CpHrg~-~L~~g~~~---~~-~l~CpyHgw~f~~-~G  132 (378)
                      .|+.||.++||++|+++.+++.|++++|+|..+| +++|+.|+|||||+ +|+.|.+.   +. .|+||||||+||+ +|
T Consensus         6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG   85 (113)
T 2jo6_A            6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG   85 (113)
T ss_dssp             CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred             hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence            5999999999999999999999999999998899 69999999999999 79999875   23 8999999999998 99


Q ss_pred             ceeecCCccccccccccCCceEEcCeEEEcCC
Q 017058          133 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  164 (378)
Q Consensus       133 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~  164 (378)
                      +|+.+|.     .+|++|||++++|+|||+++
T Consensus        86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~  112 (113)
T 2jo6_A           86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG  112 (113)
T ss_dssp             EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred             cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence            9999997     36999999999999999874

>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3

Probab=99.94  E-value=4.9e-27  Score=197.24  Aligned_cols=104  Identities=17%  Similarity=0.167  Sum_probs=94.7

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCC-cEEEEccCCCCCCC-CCCCcccc---C-CeeecCCCCeEEcC-CC
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG  132 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G-~~~a~~n~CpHrg~-~L~~g~~~---~-~~l~CpyHgw~f~~-~G  132 (378)
                      .|+.||.++||++|+.+.+++.|++|+|+|..+| +++|+.|+|||||+ +|+.|.+.   + ..|+||||||+||+ ||
T Consensus         3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG   82 (130)
T 2jza_A            3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG   82 (130)
T ss_dssp             SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred             ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence            5999999999999999999999999999998778 99999999999999 59999875   3 38999999999998 99


Q ss_pred             ceeecCCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058          133 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       133 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      +|+.+|.     .+|++|||++++|+|||+++++++
T Consensus        83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~~  113 (130)
T 2jza_A           83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSDV  113 (130)
T ss_dssp             CBSSCCS-----SCCBCCCEEESSSEEEEECCCCCC
T ss_pred             CCCCCCc-----CcceEEEEEEECCEEEEEeCCCCC
Confidence            9999997     369999999999999999976543

>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}

Probab=99.93  E-value=3.2e-27  Score=204.76  Aligned_cols=110  Identities=24%  Similarity=0.387  Sum_probs=95.5

Q ss_pred             ccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccC----CeeecCCCCeEEcC-C
Q 017058           57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D  131 (378)
Q Consensus        57 ~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~----~~l~CpyHgw~f~~-~  131 (378)
                      ..+.|+.||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.+.+    +.|+||||||+||+ +
T Consensus        13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t   91 (157)
T 3d89_A           13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT   91 (157)
T ss_dssp             -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred             CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence            467899999999998889999999999999999 59999999999999999999998753    68999999999998 9


Q ss_pred             Cceee--c-CCccc-------cccccccCCceEEcCeEEEcCCCCC
Q 017058          132 GKCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP  167 (378)
Q Consensus       132 G~~~~--~-P~~~~-------~~~~l~~~~v~~~~G~I~v~~~~~~  167 (378)
                      |+|+.  + |....       ...+|++|||++++|+|||++++++
T Consensus        92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~  137 (157)
T 3d89_A           92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP  137 (157)
T ss_dssp             CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred             cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence            99986  3 64211       1357999999999999999998764

>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}

Probab=99.93  E-value=9.9e-27  Score=192.16  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=88.6

Q ss_pred             CceEEEEecCCCCCCCeEEEEEC-CeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccC-----CeeecCCCCeEEcC-C
Q 017058           59 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYST-D  131 (378)
Q Consensus        59 ~~W~~v~~~~el~~g~~~~~~~~-g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~-----~~l~CpyHgw~f~~-~  131 (378)
                      +.|++||.++||++|..+.+.+. |++|+|||..||+++|+.|+|||||++|+.|.+.+     ..|+||||||+||+ |
T Consensus         8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t   87 (119)
T 4aiv_A            8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD   87 (119)
T ss_dssp             EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred             cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence            46999999999999888888885 79999999999999999999999999998865432     35999999999995 9


Q ss_pred             CceeecCCccccccccccCCceEE-cCeEEEcCC
Q 017058          132 GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWIWPG  164 (378)
Q Consensus       132 G~~~~~P~~~~~~~~l~~~~v~~~-~G~I~v~~~  164 (378)
                      |+|+..|..     +|++|||+++ +|+|||...
T Consensus        88 G~~~~~p~~-----~l~~ypv~ve~dG~V~V~~~  116 (119)
T 4aiv_A           88 GSCLDDPRV-----SVPVYPARVTPEGRIQVARV  116 (119)
T ss_dssp             CBBSSCTTC-----BCCEECEEECTTSEEEEEEE
T ss_pred             CcCcCCCCC-----ccceEEEEEEeCCEEEEecC
Confidence            999999874     6999999865 799999753

>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1

Probab=99.88  E-value=1.7e-22  Score=169.18  Aligned_cols=97  Identities=16%  Similarity=0.273  Sum_probs=88.7

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeC--------------------------CCcEEEEccCCCCCCCCCCCcc
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS  113 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~--------------------------~G~~~a~~n~CpHrg~~L~~g~  113 (378)
                      .|..+ ..++|++|+.+.+...|++++|+|..                          +|+++|+.|+|||+|++|+.|.
T Consensus         5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~   83 (129)
T 1rie_A            5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA   83 (129)
T ss_dssp             SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred             CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence            35566 89999999999999999999999963                          8999999999999999999998


Q ss_pred             ccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceE-EcCeEEE
Q 017058          114 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  161 (378)
Q Consensus       114 ~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v  161 (378)
                      ++++.|+||||||+||.+|+|+.+|...    .|+.||+++ .+|.|+|
T Consensus        84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~~----~l~~~~v~v~~~~~v~v  128 (129)
T 1rie_A           84 GDFGGYYCPCHGSHYDASGRIRKGPAPL----NLEVPSYEFTSDDMVIV  128 (129)
T ss_dssp             TTTEEEEETTTTEEEETTCCEEESSCCS----CCCCCCEEESSSSEEEE
T ss_pred             CCCCEEEcCCCCCEEcCCCCEeeCCCCC----CCCceeEEEEeCCEEEE
Confidence            8888999999999999999999998753    699999999 8999987

>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*

Probab=99.87  E-value=1.1e-22  Score=172.45  Aligned_cols=102  Identities=17%  Similarity=0.264  Sum_probs=88.7

Q ss_pred             cCceEEEEe-cCCCCCCCeEEEE-ECCeeEEEEEeCCCcE--EEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCc
Q 017058           58 KNFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK  133 (378)
Q Consensus        58 ~~~W~~v~~-~~el~~g~~~~~~-~~g~~vvv~R~~~G~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~  133 (378)
                      ...|+.++. .+||++|..+.+. +.+++++++|..+|++  +|++|+|||||++|+.|. .++.|+||||||+||.+|+
T Consensus        19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~   97 (139)
T 1rfs_A           19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGR   97 (139)
T ss_dssp             TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCC
T ss_pred             CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCC
Confidence            356777887 8999987666665 5788888888889999  999999999999999887 5689999999999999999


Q ss_pred             eeecCCccccccccccCCceEEcCeEEEcCC
Q 017058          134 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  164 (378)
Q Consensus       134 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~  164 (378)
                      |+.+|..    ..|++|+|++++|.|||.+.
T Consensus        98 ~~~~P~~----~~L~~~~v~v~~g~V~V~~~  124 (139)
T 1rfs_A           98 VVRGPAP----LSLALAHCDVDDGKVVFVPW  124 (139)
T ss_dssp             EEESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred             CccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence            9999974    36999999999999999864

>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*

Probab=99.86  E-value=5.6e-22  Score=166.90  Aligned_cols=98  Identities=17%  Similarity=0.202  Sum_probs=88.0

Q ss_pred             ceEEEEecCCCCCCCeEEEEEC--CeeEEEEEeC---------CCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEE
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY  128 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~--g~~vvv~R~~---------~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f  128 (378)
                      -|+.||.++||++|+++.+++.  +++++|+|..         +|+++|++|+|||+|++|+. ...++.|+||||||+|
T Consensus         7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~-~~~~~~i~CP~Hg~~F   85 (133)
T 1g8k_B            7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSY-DSSSKTFSCPCHFTEF   85 (133)
T ss_dssp             CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEE-ETTTTEEECTTTCCEE
T ss_pred             CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCc-ccCCCEEECCCCCCEE
Confidence            4889999999999999999985  8999999975         89999999999999999997 3567899999999999


Q ss_pred             cC--CCceeecCCccccccccccCCceEE--cCeEEEc
Q 017058          129 ST--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW  162 (378)
Q Consensus       129 ~~--~G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~  162 (378)
                      |.  +|+|+..|...    .|++|++++.  +|.|||.
T Consensus        86 d~~~~G~~~~gP~~~----~L~~~~v~v~~~g~~V~v~  119 (133)
T 1g8k_B           86 DAEKAGQMICGEATA----DLPRVLLRYDAASDALTAV  119 (133)
T ss_dssp             EGGGTTEEEESSCSS----CCCEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCEEcCCCCC----CCCEEEEEEECCCCEEEEE
Confidence            97  89999999743    6999999998  6789984

>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}

Probab=99.83  E-value=5e-21  Score=167.87  Aligned_cols=97  Identities=18%  Similarity=0.190  Sum_probs=86.8

Q ss_pred             eEEEEecCCCCCCCeEEEEECC--eeEEEEEe---------CCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEc
Q 017058           61 WFPVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS  129 (378)
Q Consensus        61 W~~v~~~~el~~g~~~~~~~~g--~~vvv~R~---------~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~  129 (378)
                      +..||.++||++|+.+.+++.+  ++++|+|.         .+|+++|++|+|||+|++|+.| .+++.|+||||||+||
T Consensus        51 ~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd  129 (175)
T 4aay_B           51 ANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFD  129 (175)
T ss_dssp             CEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEE
T ss_pred             cceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEEC
Confidence            5589999999999999999974  58999997         5899999999999999999998 6788999999999999


Q ss_pred             C--CCceeecCCccccccccccCCceE-EcCeEEEc
Q 017058          130 T--DGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIW  162 (378)
Q Consensus       130 ~--~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v~  162 (378)
                      .  +|+|+.+|...    .|++|++++ .+|.||+-
T Consensus       130 ~~~tG~~~~gPa~~----~L~~y~v~vd~dG~V~av  161 (175)
T 4aay_B          130 PEKGGQQVWGQATQ----NLPQYVLRVADNGDIFAE  161 (175)
T ss_dssp             GGGTTEEEECSCSS----CCCBEEEEECTTSEEEEE
T ss_pred             CCCCceEecCCCCC----CcCEEEEEEEcCCEEEEE
Confidence            6  59999999843    699999999 68999963

>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}

Probab=99.72  E-value=3.6e-22  Score=167.31  Aligned_cols=96  Identities=17%  Similarity=0.306  Sum_probs=81.2

Q ss_pred             ecCCCCCCCeEEEE-ECCeeEEEEEeCCCc--EEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCccc
Q 017058           66 FSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL  142 (378)
Q Consensus        66 ~~~el~~g~~~~~~-~~g~~vvv~R~~~G~--~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~  142 (378)
                      ..+++++|+...+. +.|.+.+++|..+|+  ++|+.|+|||||++|+.|. .++.|+||||||+||.+|+|+.+|+.  
T Consensus        22 ~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~--   98 (133)
T 3azc_A           22 YLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP--   98 (133)
Confidence            56678877766665 445566666667999  9999999999999999987 66899999999999999999999974  


Q ss_pred             cccccccCCceE-EcCeEEEcCCCC
Q 017058          143 RNVKIKSLPCFE-QEGMIWIWPGDE  166 (378)
Q Consensus       143 ~~~~l~~~~v~~-~~G~I~v~~~~~  166 (378)
                        .+|++|||++ .+|.|||.++.+
T Consensus        99 --~~L~~ypv~v~~~g~V~V~~~~e  121 (133)
T 3azc_A           99 --LSLALVKATVTEDDKLVFTPWTE  121 (133)
Confidence              3699999999 999999987543

>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*

Probab=99.80  E-value=2.5e-19  Score=158.72  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=88.1

Q ss_pred             cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeC--------------------------CCcEEEEccCCCCCCC
Q 017058           54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRAC  107 (378)
Q Consensus        54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~--------------------------~G~~~a~~n~CpHrg~  107 (378)
                      .......|+.| ..++|++|+.+++++.|++++|+|..                          +|+++|+.|+|||+||
T Consensus        56 ~~~~a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc  134 (185)
T 3cx5_E           56 ADVLAMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGC  134 (185)
T ss_dssp             GGGCCCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSC
T ss_pred             cchhccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCc
Confidence            33445679999 69999999999999999999999963                          6999999999999999


Q ss_pred             CCCCccccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceEEcCeEEE
Q 017058          108 PLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI  161 (378)
Q Consensus       108 ~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v  161 (378)
                      .+....++.+.|.||||||+||.+|+|+.+|+..    .|+.+|+.+.+|.|||
T Consensus       135 ~p~~~~~~~~~~~CPcHGs~FD~~G~v~~gPa~~----~L~v~p~~v~~~~I~v  184 (185)
T 3cx5_E          135 VPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPL----NLEIPAYEFDGDKVIV  184 (185)
T ss_dssp             CCEEEETTTTEEEETTTTEEECTTCCEEESSCCS----CCCCCCEEEETTEEEE
T ss_pred             eeccCCCCCCEEEcCCCCCEECCCCCEecCCCCC----CcceEEEEEECCEEEE
Confidence            6544334568999999999999999999998743    5888888889999997

>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*

Probab=99.79  E-value=5.5e-19  Score=156.83  Aligned_cols=97  Identities=22%  Similarity=0.267  Sum_probs=84.9

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEe----------------------------------------CCCcEEEEc
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQ   99 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~----------------------------------------~~G~~~a~~   99 (378)
                      .|+.| ..++|++|+.+.++..|++|+|+|.                                        .+|+++|+.
T Consensus        48 ~~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~  126 (187)
T 2qjy_C           48 ASIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW  126 (187)
T ss_dssp             CCEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEE
T ss_pred             ccEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEe
Confidence            46665 8999999999999999999999992                                        289999999


Q ss_pred             cCCCCCCCCCCCc-cccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceEE-cCeEEE
Q 017058          100 NTCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI  161 (378)
Q Consensus       100 n~CpHrg~~L~~g-~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~-~G~I~v  161 (378)
                      |+|||+||+|+.+ .++.+.|.||||||+||.+|+|+..|...    .|+.||+++. +|.|+|
T Consensus       127 ~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~~----~L~~~~~~v~~d~~i~i  186 (187)
T 2qjy_C          127 GVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPE----NLPIPLAKFIDETTIQL  186 (187)
T ss_dssp             CCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCS----CCCBCSEEEEETTEEEE
T ss_pred             CccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCCC----CCceEEEEEEeCCEEEE
Confidence            9999999999983 44458999999999999999999998743    6999999886 689987

>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...

Probab=99.79  E-value=3.7e-19  Score=158.75  Aligned_cols=95  Identities=18%  Similarity=0.280  Sum_probs=86.8

Q ss_pred             EEEecCCCCCCCeEEEEECCeeEEEEEe--------------------------CCCcEEEEccCCCCCCCCCCCccccC
Q 017058           63 PVAFSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNE  116 (378)
Q Consensus        63 ~v~~~~el~~g~~~~~~~~g~~vvv~R~--------------------------~~G~~~a~~n~CpHrg~~L~~g~~~~  116 (378)
                      ..+..++|++|+.+.++..|++++|+|.                          .+|+++|+.|+|||+||+|+.|.++.
T Consensus        74 v~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~  153 (196)
T 1pp9_E           74 IEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF  153 (196)
T ss_dssp             EEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTT
T ss_pred             cEEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCC
Confidence            4589999999999999999999999985                          28999999999999999999988877


Q ss_pred             CeeecCCCCeEEcCCCceeecCCccccccccccCCceE-EcCeEEE
Q 017058          117 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  161 (378)
Q Consensus       117 ~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v  161 (378)
                      +.|.||||||+||.+|+++.+|+..    .|..+|+++ .+|.|+|
T Consensus       154 ~~~~CP~HGs~FD~~G~v~~gPa~~----~L~~~p~~v~~d~~I~v  195 (196)
T 1pp9_E          154 GGYYCPCHGSHYDASGRIRKGPAPL----NLEVPSYEFTSDDMVIV  195 (196)
T ss_dssp             SSEEETTTTEEECTTCCEEESSCCS----CCCCCCEEEETTTEEEE
T ss_pred             CEEEeCCCCCEECCCCCCccCCCCC----CCcceeEEEEECCEEEE
Confidence            8999999999999999999999743    699999988 7899987

>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A

Probab=99.78  E-value=5.9e-19  Score=149.50  Aligned_cols=93  Identities=19%  Similarity=0.246  Sum_probs=83.8

Q ss_pred             EecCCCCCCCeEEEEECCeeEEEEEeC----------------------------------------CCcEEEEccCCCC
Q 017058           65 AFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------------DGIPGCVQNTCAH  104 (378)
Q Consensus        65 ~~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------------------~G~~~a~~n~CpH  104 (378)
                      ...++|++|+.++++..|+||+|.|..                                        +|+++|+.|+|||
T Consensus         6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H   85 (141)
T 2nwf_A            6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH   85 (141)
T ss_dssp             EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred             EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence            367889999999999999999999851                                        7899999999999


Q ss_pred             CCCCCCC-ccccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceE-EcCeEEE
Q 017058          105 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  161 (378)
Q Consensus       105 rg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v  161 (378)
                      +|++|+. +.++++.|.||||||+||.+|+|+.+|+..    .|..||+++ .+|.|+|
T Consensus        86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~----~L~~~pv~v~~d~~i~v  140 (141)
T 2nwf_A           86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPE----NLPIPLAKFIDETTIQL  140 (141)
T ss_dssp             TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCS----CCCBCSEEESSSSEEEE
T ss_pred             CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCCC----CCCceeEEEEECCEEEE
Confidence            9999998 777778999999999999999999998743    699999998 7999987

>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A

Probab=99.78  E-value=4.6e-19  Score=154.08  Aligned_cols=98  Identities=20%  Similarity=0.288  Sum_probs=82.0

Q ss_pred             ecCCCCCCCeEEEEECCee-------------EEEEEe-------------CCCcEEEEccCCCCCCCCCCCccccCCee
Q 017058           66 FSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI  119 (378)
Q Consensus        66 ~~~el~~g~~~~~~~~g~~-------------vvv~R~-------------~~G~~~a~~n~CpHrg~~L~~g~~~~~~l  119 (378)
                      ..++|++|+.+.+..-|.+             +++.|-             .+| ++||.|+|||+|++|+.|.++++.|
T Consensus        26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~i  104 (165)
T 1nyk_A           26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEAA  104 (165)
T ss_dssp             BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTEE
T ss_pred             cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCEE
Confidence            6788888887777764443             566665             355 9999999999999999998888999


Q ss_pred             ecCCCCeEEcC-CCc-eeecCCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058          120 QCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       120 ~CpyHgw~f~~-~G~-~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      +||||||+||. +|. |+.+|+.    ..|..|++++.+|.|||+++...+
T Consensus       105 ~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~  151 (165)
T 1nyk_A          105 LCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP  151 (165)
T ss_dssp             ECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred             ECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence            99999999997 586 9999974    369999999999999999876554

>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*

Probab=99.74  E-value=2.9e-19  Score=157.80  Aligned_cols=92  Identities=18%  Similarity=0.325  Sum_probs=81.3

Q ss_pred             cCCCCCCCeEEEE-ECCeeEEEEEeCCCcE--EEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCcccc
Q 017058           67 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR  143 (378)
Q Consensus        67 ~~el~~g~~~~~~-~~g~~vvv~R~~~G~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~  143 (378)
                      .++|++|+...+. +.|++++++|+.+|++  +|+.|+|||+||+|+.+. .++.|.||||||+||.+|+|+.+|+.   
T Consensus        70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~---  145 (179)
T 1vf5_D           70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP---  145 (179)
T ss_dssp             HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred             ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence            4678888877776 6789999999899998  999999999999999877 45789999999999999999999974   


Q ss_pred             ccccccCCceEEcCeEEEcC
Q 017058          144 NVKIKSLPCFEQEGMIWIWP  163 (378)
Q Consensus       144 ~~~l~~~~v~~~~G~I~v~~  163 (378)
                       ..|+.||+++.+|.|||.+
T Consensus       146 -~~L~~~~v~v~~g~v~v~~  164 (179)
T 1vf5_D          146 -LSLALCHATVQDDNIVLTP  164 (179)
T ss_dssp             -SCCBCCCCCCSSSSCCCCC
T ss_pred             -CCCCeEEEEEECCEEEEEe
Confidence             3699999999999999975

>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1

Probab=99.66  E-value=6.3e-18  Score=151.66  Aligned_cols=85  Identities=18%  Similarity=0.298  Sum_probs=72.4

Q ss_pred             EEEEECCeeEEEEEeC------------CCcEEEEccCCCCCCCCCCCccc-----------cCCeeecCCCCeEEcCC-
Q 017058           76 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD-  131 (378)
Q Consensus        76 ~~~~~~g~~vvv~R~~------------~G~~~a~~n~CpHrg~~L~~g~~-----------~~~~l~CpyHgw~f~~~-  131 (378)
                      +.+++.+.+++++|..            +|+++|+.|+|||+|++|+.|.+           .++.|+||||||+||.+ 
T Consensus        56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t  135 (204)
T 1jm1_A           56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD  135 (204)
T ss_dssp             CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred             ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence            4577888888888875            79999999999999999998853           57899999999999985 


Q ss_pred             -CceeecCCccccccccccCCceEE--cCeEEEcCC
Q 017058          132 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWPG  164 (378)
Q Consensus       132 -G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~~~  164 (378)
                       |+|+..|+..    .|+.|++.+.  +|.|||...
T Consensus       136 GG~v~~gPa~~----~L~~~~v~v~~~~g~v~v~g~  167 (204)
T 1jm1_A          136 GGVVVSGPAPR----PLPIVILDYDSSTGDIYAVGT  167 (204)
T ss_dssp             TSEEEESSCCS----CCCBEEEEECTTTCEEEEEEE
T ss_pred             CCeEecCCCCC----CCCeEeeEEEecCCEEEEEeC
Confidence             6999998743    5888888877  899998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1z01a1	148	b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m	5e-25
d2de6a1	142	b.33.1.2 (A:1-142) Terminal oxygenase component of	2e-24
d1vm9a_	109	b.33.1.1 (A:) Toluene-4-monooxygenase system prote	3e-18
d1fqta_	109	b.33.1.1 (A:) Rieske-type ferredoxin associated wi	9e-18
d1rfsa_	127	b.33.1.1 (A:) ISP subunit from chloroplast cytochr	2e-16
d2jzaa1	122	b.33.1.3 (A:1-122) NADH-nitrite reductase small su	2e-13
d2jo6a1	108	b.33.1.3 (A:1-108) NADH-nitrite reductase small su	1e-12
d2e74d1	134	b.33.1.1 (D:46-179) ISP subunit from the cytochrom	2e-12
d3c0da1	108	b.33.1.3 (A:4-111) NADH-nitrite reductase small su	9e-12
d1ulia1	154	b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub	1e-10
d1g8kb_	133	b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc	4e-09
d2bmoa1	150	b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha	1e-08
d1nyka_	156	b.33.1.1 (A:) Soluble Rieske protein {Thermus ther	1e-08
d2b1xa1	162	b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp	5e-07
d1jm1a_	202	b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S	0.002
d1riea_	127	b.33.1.1 (A:) ISP subunit of the mitochondrial cyt	0.003

>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

 Score = 97.1 bits (241), Expect = 5e-25
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 51  QPY---NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 107
           QPY        N W+P  F+ +L++D +        P V+ R  +G    +++ C HR  
Sbjct: 16  QPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGV 74

Query: 108 PLHLG--SVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-----LRNVKIKSLPCFEQEGMIW 160
            L        +  I C YHG+ +  +               +    + + P  E  GMI+
Sbjct: 75  RLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIF 134

Query: 161 IWPG-DEPPTATIP 173
           ++   D+ P   +P
Sbjct: 135 VFVREDDFPDEDVP 148

>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

 Score = 95.6 bits (237), Expect = 2e-24
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 57  LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SV 114
            +N W+PV FS ++ +          E  ++ R  DG   C+++ C HR   L +     
Sbjct: 25  FRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECK 83

Query: 115 NEGRIQCPYHGWEYS-TDGKCEKMP----STQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168
            +  I C YH W Y   DG    +     S Q+   K+K+ P  E +G ++I+ GD  P
Sbjct: 84  TKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDP 142

>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Toluene-4-monooxygenase system protein C, TmoC
species: Pseudomonas mendocina [TaxId: 300]

 Score = 77.4 bits (190), Expect = 3e-18
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFE-EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 119
           +  +    D+    M  F+  +    +I   ++      Q  C H+   L  GS   G I
Sbjct: 2   FEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVI 61

Query: 120 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168
            C  H W ++   G           +  +   P   +   I++      P
Sbjct: 62  TCRAHLWTFNDGTGHGINPD-----DAALAEYPVEVKGDDIYVSTKGILP 106

>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske-type ferredoxin associated with biphenyl dioxygenase
species: Burkholderia cepacia [TaxId: 292]

 Score = 75.9 bits (186), Expect = 9e-18
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
           +  V    D+ +   +  +       IF   DG     Q+ C H    L  G   EG + 
Sbjct: 3   FTRVCDRRDVPEGEALKVESGGTSVAIFN-VDGELFATQDRCTHGDWSLSDGGYLEGDVV 61

Query: 121 C-PYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW--PGDEPP 168
               H  ++    GK +  P  +     +K  P   ++  + +    G   P
Sbjct: 62  ECSLHMGKFCVRTGKVKSPPPCE----ALKIFPIRIEDNDVLVDFEAGYLAP 109

>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from chloroplast cytochrome bf complex
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 86  VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV 145
           V+   K      +   C H  C +   +  E +  CP HG +Y+  G+  + P+      
Sbjct: 39  VVESDKTLATFGINAVCTHLGCVVPFNAA-ENKFICPCHGSQYNNQGRVVRGPAPL---- 93

Query: 146 KIKSLPCFEQEGMIWIWPGDEPPTAT 171
            +    C   +G +   P  E    T
Sbjct: 94  SLALAHCDVDDGKVVFVPWTETDFRT 119

>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Length = 122

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Erwinia carotovora [TaxId: 554]

 Score = 64.3 bits (155), Expect = 2e-13
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 10/114 (8%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLH-----LGSV 114
           W  V    D+   T V     ++   +FR + D     + N        +          
Sbjct: 4   WTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQ 63

Query: 115 NEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168
           ++  +  P     +                  + +       G + I   D   
Sbjct: 64  DDLWVASPLKKQHFRLYDGFCLED----GAYSVAAYDTQVTNGNVQISIADSDV 113

>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Escherichia coli [TaxId: 562]

 Score = 61.3 bits (148), Expect = 1e-12
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 12/108 (11%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAHRACPL-----HLGSV 114
           W  +    D+  +T V     +E   IFR         + N        +          
Sbjct: 4   WKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQ 63

Query: 115 NEGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 161
            E  +  P     +  +DG C +          +K      ++G++ +
Sbjct: 64  GELWVASPLKKQRFRLSDGLCMEDEQ-----FSVKHYEARVKDGVVQL 106

>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from the cytochrome b6f complex, soluble domain
species: Mastigocladus laminosus [TaxId: 83541]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 72  DDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST 130
           D  +V     +  +++    +      +   C H  C +   +  E + +CP HG +Y  
Sbjct: 32  DRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDE 90

Query: 131 DGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 171
            GK  + P+       +       Q+  I + P  E    T
Sbjct: 91  TGKVIRGPAPL----SLALCHATVQDDNIVLTPWTETDFRT 127

>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Length = 108

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 59.0 bits (142), Expect = 9e-12
 Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 11/111 (9%)

Query: 61  WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-----N 115
              +    DL            E   +F   D     VQ+        +    +      
Sbjct: 3   KVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDING 62

Query: 116 EGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGD 165
           E  +  P +   +S   G+C +  +       +K+      +  +     +
Sbjct: 63  EMCVASPLYKQHFSLKSGQCLEDEA-----HCLKTWRVTVDDNQVCYLAKE 108

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 9/118 (7%)

Query: 58  KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH-LGSVN 115
              W  +   T +      +     E+P ++ R K+G      N C HR   +      N
Sbjct: 37  GRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGN 96

Query: 116 EGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDE 166
                C YHGW Y T G    +P  +         +           +G+I+     +
Sbjct: 97  AKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDAD 154

>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Arsenite oxidase Rieske subunit
species: Alcaligenes faecalis [TaxId: 511]

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 21/123 (17%)

Query: 63  PVAFSTDLKDDTMVPF-------DCF----EEPWVIFRGKDGIPGCVQNTCAHRACPLHL 111
            V+ + +L  +  V F        C       P     G D         C H  CP   
Sbjct: 10  AVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSY 69

Query: 112 GSVNEGRIQCPYHGWEYS--TDGKCEKMPSTQ-LRNVKIK------SLPCFEQEGMIWIW 162
              +     CP H  E+     G+     +T  L  V ++      +L     +G+I+  
Sbjct: 70  D-SSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAVGVDGLIYGR 128

Query: 163 PGD 165
             +
Sbjct: 129 QAN 131

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 58  KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
              W  +   + +      V      +  ++ R  DG      N C HR   L       
Sbjct: 32  ARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGN 91

Query: 117 G-RIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIW 162
                C YHGW Y ++G+ + +P  +         + + +K +P  E   G I+  
Sbjct: 92  AKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGC 147

>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Soluble Rieske protein
species: Thermus thermophilus [TaxId: 274]

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY--STDGKCEKMPS 139
             P V     +G+       C H  C +     +E    CP HG  Y      +    P 
Sbjct: 68  LAPEVAQHAAEGVV-AYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPP 126

Query: 140 TQLRNVKIKSLPCFEQEGMIWIW-PGDEPP 168
            +     +  LP   ++G++        P 
Sbjct: 127 PR----PVPQLPVRVEDGVLVAAGEFLGPV 152

>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 58  KNFWFPVAFSTDLKDDT-MVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
            + W  +A  +++ +    V     E+ +++ R + G      N C HR   +    +  
Sbjct: 43  GHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGN 102

Query: 117 GR-IQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIW 162
               +CPYHGW YS  G    +P+ +          +  ++ +P     +G+I+  
Sbjct: 103 TSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGS 158

>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske protein II (SoxF)
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 13/73 (17%)

Query: 82  EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-----------EGRIQCPYHGWEY-- 128
           +   +   G +G      + C H  C L    +               + CP HG  Y  
Sbjct: 72  QIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYAL 131

Query: 129 STDGKCEKMPSTQ 141
              G     P+ +
Sbjct: 132 KDGGVVVSGPAPR 144

>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Length = 127

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 97  CVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 141
            +   C H  C     + + G   CP HG  Y   G+  K P+  
Sbjct: 65  ILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPL 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1ulia1	154	Biphenyl dioxygenase large subunit BphA1, N-termin	100.0
d2bmoa1	150	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	100.0
d2b1xa1	162	Naphthalene 1,2-dioxygenase alpha subunit, N-domai	100.0
d2de6a1	142	Terminal oxygenase component of carbazole CarAa {J	99.97
d1z01a1	148	2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen	99.97
d2jzaa1	122	NADH-nitrite reductase small subunit NirD {Erwinia	99.94
d1vm9a_	109	Toluene-4-monooxygenase system protein C, TmoC {Ps	99.93
d2jo6a1	108	NADH-nitrite reductase small subunit NirD {Escheri	99.92
d1fqta_	109	Rieske-type ferredoxin associated with biphenyl di	99.92
d3c0da1	108	NADH-nitrite reductase small subunit NirD {Vibrio	99.91
d1rfsa_	127	ISP subunit from chloroplast cytochrome bf complex	99.79
d1g8kb_	133	Arsenite oxidase Rieske subunit {Alcaligenes faeca	99.75
d2e74d1	134	ISP subunit from the cytochrome b6f complex, solub	99.72
d1nyka_	156	Soluble Rieske protein {Thermus thermophilus [TaxI	99.61
d3cx5e1	129	ISP subunit of the mitochondrial cytochrome bc1-co	99.4
d1z01a2	279	2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen	99.35
d1riea_	127	ISP subunit of the mitochondrial cytochrome bc1-co	99.29
d1jm1a_	202	Rieske protein II (SoxF) {Archaeon Sulfolobus acid	99.01
d2de6a2	242	Terminal oxygenase component of carbazole CarAa {J	98.33
d2b1xa2	279	Naphthalene 1,2-dioxygenase alpha subunit, C-domai	98.03
d2bmoa2	287	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	98.0
d1ulia2	281	Biphenyl dioxygenase large subunit BphA1, C-termin	97.76
d1wqla2	279	Large subunit of cumene dioxygenase cumA1 {Pseudom	97.51

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=100.00  E-value=2.3e-35  Score=252.69  Aligned_cols=128  Identities=19%  Similarity=0.291  Sum_probs=115.1

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      .....|+|+++|++|+++||+                 +.|++||+++||+ +|+++++++++++|+|+|+.+|+++||.
T Consensus        17 l~~~~Y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~~~g~i~af~   79 (154)
T d1ulia1          17 LDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFL   79 (154)
T ss_dssp             ECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHHhc-----------------cCCEEEEEhhhCCCCcceeeeecCCcceeEEeecccceeeee
Confidence            456799999999999999985                 4566999999997 5999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCcc-------ccccccccCCceEEcCeEEEcCCC
Q 017058          100 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGD  165 (378)
Q Consensus       100 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~-------~~~~~l~~~~v~~~~G~I~v~~~~  165 (378)
                      |+|||||++|+.+. ++++.|+||||||+|+++|+|+.+|..+       ..+.+|.+++|++.+|+||||+++
T Consensus        80 N~C~HRG~~L~~~~~g~~~~l~CpYHgW~f~~~G~~~~iP~~~~~~~~~~~~~~~L~~~~v~~~~G~Ifv~~d~  153 (154)
T d1ulia1          80 NQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDA  153 (154)
T ss_dssp             SCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCT
T ss_pred             cccccCCceeeecCCCccceEEeeeceeEEecCCccccCCcccccCCCCChHHCCCeEEeEEEECCEEEEEeCC
Confidence            99999999999854 5788999999999999999999999643       234678999999999999999975

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=100.00  E-value=7.5e-35  Score=247.86  Aligned_cols=126  Identities=19%  Similarity=0.308  Sum_probs=113.0

Q ss_pred             cCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEcc
Q 017058           22 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQN  100 (378)
Q Consensus        22 ~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n  100 (378)
                      +..+|+|+++|++|+++||++                 .|++||+++||+ +|+++++++++++++|+|+.||+++||.|
T Consensus        13 ~~~~y~D~~~f~~E~~~if~~-----------------~W~~v~~~~elp~~Gd~~~~~i~~~~~vv~R~~dg~i~af~N   75 (150)
T d2bmoa1          13 KLLIHGDKELFQHELKTIFAR-----------------NWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLN   75 (150)
T ss_dssp             EGGGGTCHHHHHHHHHHTTTT-----------------SCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEES
T ss_pred             CccccCCHHHHHHHHHHHHHc-----------------CCeEeehHHHcCCCcceeeeeecCceeEEEecCCCchhhhhh
Confidence            344899999999999999855                 456999999997 69999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCcc--------ccccccccCC-ceEEcCeEEEcCC
Q 017058          101 TCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPG  164 (378)
Q Consensus       101 ~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~--------~~~~~l~~~~-v~~~~G~I~v~~~  164 (378)
                      +|||||++|+.|. ++.+.|+||||||+||.+|+|+.+|..+        ....+|.++| |++++|+|||+|+
T Consensus        76 ~C~HRG~~L~~~~~g~~~~i~CpYHgW~yd~~G~l~~~P~~~~~~~~~~~~~~~~L~~~~~ve~~~G~Ifv~ld  149 (150)
T d2bmoa1          76 VCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFD  149 (150)
T ss_dssp             BCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESC
T ss_pred             hcccccccccccccccccceEecccceeeccccchhcCCCccccCCCCCChhhCCCcccceEEEECCEEEEecC
Confidence            9999999999986 4788999999999999999999999743        2346789998 7778999999996

>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=100.00  E-value=9.3e-35  Score=250.80  Aligned_cols=128  Identities=20%  Similarity=0.394  Sum_probs=113.8

Q ss_pred             ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058           21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ   99 (378)
Q Consensus        21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~   99 (378)
                      ....+|+|+++|++|+++||+                 +.|++||+++||+ +|++++++++|+++||+|+.||+++||.
T Consensus        23 lP~~~Y~d~~~f~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~~vv~R~~dG~i~a~~   85 (162)
T d2b1xa1          23 VPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHL   85 (162)
T ss_dssp             EEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHHHc-----------------CCCEEEEEHHHcCCccceeeEeecCCceEEEecCCcceEEee
Confidence            445699999999999999984                 5567999999997 6999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCccc--------cccccccCC-ceEEcCeEEEcCCC
Q 017058          100 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGD  165 (378)
Q Consensus       100 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~~--------~~~~l~~~~-v~~~~G~I~v~~~~  165 (378)
                      |+|||||++|+.|. +.++.|+||||||+||.+|+|+.+|..+.        .+.+|++++ |++++|+|||+|++
T Consensus        86 N~C~HRG~~l~~~~~g~~~~i~CpYHgW~yd~~G~l~~~P~~~~~~~~~~~~~~~~L~~~~~v~~~~GlIfv~ldP  161 (162)
T d2b1xa1          86 NACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDP  161 (162)
T ss_dssp             SSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCT
T ss_pred             cccccCcccccccccCccccccCCCceeEEcCCCCeEECCCcccCCCCCCChhhcCCeeeeeEEEECCEEEEEcCC
Confidence            99999999999875 57889999999999999999999997532        245788886 78889999999975

>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

Probab=99.97  E-value=9.7e-32  Score=227.38  Aligned_cols=112  Identities=29%  Similarity=0.611  Sum_probs=100.0

Q ss_pred             cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcC-CC
Q 017058           56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG  132 (378)
Q Consensus        56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G  132 (378)
                      .|++.|++||+++||++|+++.++++|++|+|+|. +|+++|+.|+|||||++|+.|.  ..++.|+||||||+||+ +|
T Consensus        24 ~f~~~W~~v~~~~el~~g~~~~~~i~g~~ivv~r~-~g~v~a~~n~CpHrga~L~~g~~~~~~~~i~Cp~Hgw~fdl~~G  102 (142)
T d2de6a1          24 GFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDG  102 (142)
T ss_dssp             CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTC
T ss_pred             CCcccCEEEEEHHHCCCCCeEEEEECCEEEEEEEc-CCEEEEEeCccCCCCccCCccccccccCEEeccceeeEEeccCC
Confidence            46889999999999999999999999999999996 8999999999999999999875  34678999999999996 89


Q ss_pred             ceeecCCccc----cccccccCCceEEcCeEEEcCCCCCC
Q 017058          133 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       133 ~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      .|+.+|..+.    .+.+|++|||++.+|+|||++++.+|
T Consensus       103 ~~~~~p~~~~~~~~~~~~l~~y~v~e~~G~I~v~l~d~~P  142 (142)
T d2de6a1         103 VLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDP  142 (142)
T ss_dssp             BEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSC
T ss_pred             ceEecCCCcccCCccccCCCEEeEEEECCEEEEEeCCCCC
Confidence            9999987542    34679999999999999999986543

>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

Probab=99.97  E-value=1.2e-30  Score=222.23  Aligned_cols=110  Identities=24%  Similarity=0.530  Sum_probs=98.6

Q ss_pred             ccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcC-CCc
Q 017058           57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DGK  133 (378)
Q Consensus        57 ~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G~  133 (378)
                      +.|.||+||+++||++|+++.++++|++|+|+| .+|+++||.|+|||||++|+.|.  +.++.|+||||||+||+ +|.
T Consensus        25 ~~~~W~~v~~~~el~~g~~~~~~i~g~~vvl~~-~~g~i~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~fd~~~G~  103 (148)
T d1z01a1          25 FINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGK  103 (148)
T ss_dssp             BCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCB
T ss_pred             cccccEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEEeecCccccEeEccccccccCEEEecccCCEEecCcce
Confidence            679999999999999999999999999998876 59999999999999999999986  45779999999999996 699


Q ss_pred             eeecCCccc----cccccccCCceEEcCeEEEcCCCCC
Q 017058          134 CEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP  167 (378)
Q Consensus       134 ~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~  167 (378)
                      |+.+|....    .+.+|++|||++++|+|||++++++
T Consensus       104 ~~~~p~~~~~~~~~~~~l~~y~v~~~~g~I~v~l~~~~  141 (148)
T d1z01a1         104 LVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDD  141 (148)
T ss_dssp             EEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTT
T ss_pred             EecccccccccCCccCCcceEEEEEECCEEEEEeCCCC
Confidence            999987542    3578999999999999999997654

>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Erwinia carotovora [TaxId: 554]

Probab=99.94  E-value=1.1e-26  Score=191.02  Aligned_cols=105  Identities=18%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             CceEEEEecCCCCCCCeEEEEECCeeEEEEEe-CCCcEEEEccCCCCCCCC-CCCcccc----CCeeecCCCCeEEcC-C
Q 017058           59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYST-D  131 (378)
Q Consensus        59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~-~~G~~~a~~n~CpHrg~~-L~~g~~~----~~~l~CpyHgw~f~~-~  131 (378)
                      +.|+.||.++||++|+.+.+++.|++++|+|. .+|+++|+.|+|||+|++ |+.|.+.    +..|+||||||+||+ |
T Consensus         2 s~W~~Vc~~~dl~~g~~~~v~v~g~~v~l~~~~~~g~v~A~~~~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~t   81 (122)
T d2jzaa1           2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD   81 (122)
T ss_dssp             CSEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred             CCcEEEEEHHHcCCCCeEEEEECCEEEEEEEEcCCCEEEEEecCCCcccccccccceeeeccCCCEEECCCCCCeeeccc
Confidence            46999999999999999999999999999995 579999999999999998 7778653    447999999999995 8


Q ss_pred             CceeecCCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058          132 GKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       132 G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      |+|+..|..     .|++|||++++|.|||++.+.+.
T Consensus        82 G~~~~~p~~-----~l~~~~v~v~~g~V~v~~~~~~~  113 (122)
T d2jzaa1          82 GFCLEDGAY-----SVAAYDTQVTNGNVQISIADSDV  113 (122)
T ss_dssp             CCBSSCCSS-----CCBCCCEEESSSEEEEECCCCCC
T ss_pred             ceeeecccc-----CCCccceEEECCEEEEEeCCcCc
Confidence            999999864     59999999999999999976543

>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Toluene-4-monooxygenase system protein C, TmoC
species: Pseudomonas mendocina [TaxId: 300]

Probab=99.93  E-value=1.4e-26  Score=186.72  Aligned_cols=104  Identities=18%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             ceEEEEecCCCCCCCeEEEEEC-CeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeec
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  137 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~-g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~  137 (378)
                      .|..||.++||++|+.+.+++. |++++|+|..+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+..
T Consensus         1 ~w~~vc~~~dl~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~l~~G~~~~p   80 (109)
T d1vm9a_           1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP   80 (109)
T ss_dssp             CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSSS
T ss_pred             CeeEEEEHHHCCCCCeEEEEecCCeEEEEEEeCCCeEEEEEeeCCCCCccceeEeccCCEEEcccCCceEECCCccCCCC
Confidence            4889999999999999999985 7999999999999999999999999999999999999999999999996 8999864


Q ss_pred             CCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058          138 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  168 (378)
Q Consensus       138 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~  168 (378)
                      |.     ..|++|||++++|.|||.+++..|
T Consensus        81 ~~-----~~L~~~~v~v~~g~v~V~~~~~~P  106 (109)
T d1vm9a_          81 DD-----AALAEYPVEVKGDDIYVSTKGILP  106 (109)
T ss_dssp             SS-----CBCCEECEEEETTEEEECCTTCCC
T ss_pred             CC-----CCccEEeEEEECCEEEEEeCCCCC
Confidence            43     369999999999999999866554

>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.3e-26  Score=182.87  Aligned_cols=99  Identities=18%  Similarity=0.194  Sum_probs=88.5

Q ss_pred             CceEEEEecCCCCCCCeEEEEECCeeEEEEE-eCCCcEEEEccCCCCCCCC-CCCcccc----CCeeecCCCCeEEcC-C
Q 017058           59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYST-D  131 (378)
Q Consensus        59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R-~~~G~~~a~~n~CpHrg~~-L~~g~~~----~~~l~CpyHgw~f~~-~  131 (378)
                      ..|++||+++||++|+.+.+.+.|++|+|+| ..+|+++|+.|+|||+|++ |+.|.+.    +..|+||||||+||+ |
T Consensus         2 s~W~~vc~~~dl~~g~~~~~~~~g~~i~l~r~~~~g~v~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~F~l~t   81 (108)
T d2jo6a1           2 SQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSD   81 (108)
T ss_dssp             CCCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTT
T ss_pred             CCCEEEeEHHHCCCCCeEEEEECCEEEEEEEECcCCEEEEEECcCCCCCCccccceeEeccccCCEEECCCCCceEECCC
Confidence            4799999999999999999999999999999 4689999999999999998 6777653    236999999999995 9


Q ss_pred             CceeecCCccccccccccCCceEEcCeEEEc
Q 017058          132 GKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW  162 (378)
Q Consensus       132 G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~  162 (378)
                      |+|+..|..     +|++|||++++|.|||.
T Consensus        82 G~~~~~p~~-----~l~~y~v~v~~g~V~V~  107 (108)
T d2jo6a1          82 GLCMEDEQF-----SVKHYEARVKDGVVQLR  107 (108)
T ss_dssp             TEETTTTTT-----CCCEEEEEEETTEEEEE
T ss_pred             ccCCCCCCC-----cccEEeEEEECCEEEEe
Confidence            999998864     69999999999999984

>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske-type ferredoxin associated with biphenyl dioxygenase
species: Burkholderia cepacia [TaxId: 292]

Probab=99.92  E-value=5.4e-25  Score=177.22  Aligned_cols=102  Identities=18%  Similarity=0.262  Sum_probs=93.8

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc-ccCCeeecCCCCeEEcC-CCceeec
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYST-DGKCEKM  137 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~-~G~~~~~  137 (378)
                      .|+.||.++||++|+.+.+++.|.+++|+|. +|+++|+.|+|||+|++|+.|. +.++.|+||+|||+||+ ||+|+..
T Consensus         2 ~w~~v~~~~dl~~g~~~~~~~~~~~i~v~r~-~~~~~A~~~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~tG~~~~~   80 (109)
T d1fqta_           2 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP   80 (109)
T ss_dssp             CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred             cEEEeeEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEEeeccccCcccccceeecCCEEEccccCCEEECCCccCccC
Confidence            5999999999999999999999999999996 7899999999999999999875 56789999999999995 9999999


Q ss_pred             CCccccccccccCCceEEcCeEEEcCCCC
Q 017058          138 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       138 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                      |...    .|+.|++++.+|.|||+++.+
T Consensus        81 p~~~----~l~~~~v~~~~g~i~v~~~~~  105 (109)
T d1fqta_          81 PPCE----ALKIFPIRIEDNDVLVDFEAG  105 (109)
T ss_dssp             SCCS----CCCBCCEEEETTEEEECTTCC
T ss_pred             CCCC----CCCEEeEEEECCEEEEEeCCC
Confidence            9753    599999999999999998754

>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.91  E-value=3.3e-25  Score=178.21  Aligned_cols=100  Identities=14%  Similarity=0.010  Sum_probs=88.9

Q ss_pred             ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc-c----cCCeeecCCCCeEEcC-CCc
Q 017058           60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-V----NEGRIQCPYHGWEYST-DGK  133 (378)
Q Consensus        60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~-~----~~~~l~CpyHgw~f~~-~G~  133 (378)
                      .|+.||.++||++|+.+.+.+.|++++|+|..+|+++|+.|+|||+|++|..+. +    .+..|+||||||+||+ +|+
T Consensus         2 ~~v~vc~~~dl~~g~~~~~~~~g~~i~v~r~~~g~~~A~~~~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~   81 (108)
T d3c0da1           2 TKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQ   81 (108)
T ss_dssp             CEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCB
T ss_pred             CcEEEEEHHHCCCCCEEEEEECCEEEEEEEeCCCCEEEEEccCCCCCcccccccEEEecCCceEEeccccccEEeccCCc
Confidence            588999999999999999999999999999989999999999999999986643 2    1236999999999995 999


Q ss_pred             eeecCCccccccccccCCceEEcCeEEEcCC
Q 017058          134 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  164 (378)
Q Consensus       134 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~  164 (378)
                      |+..|..     +|++|||++++|.|||...
T Consensus        82 ~~~~p~~-----~l~~y~v~v~~g~V~V~~~  107 (108)
T d3c0da1          82 CLEDEAH-----CLKTWRVTVDDNQVCYLAK  107 (108)
T ss_dssp             BSSCTTC-----BCCEECEEESSSEEEEECC
T ss_pred             cccCCCC-----cccEEeEEEECCEEEEEec
Confidence            9988764     5999999999999999763

>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from chloroplast cytochrome bf complex
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.79  E-value=2.6e-20  Score=152.93  Aligned_cols=94  Identities=17%  Similarity=0.323  Sum_probs=76.5

Q ss_pred             CCCCCCCeEEEE-ECCeeEEEEEeC--CCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCccccc
Q 017058           68 TDLKDDTMVPFD-CFEEPWVIFRGK--DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRN  144 (378)
Q Consensus        68 ~el~~g~~~~~~-~~g~~vvv~R~~--~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~  144 (378)
                      .+.++|+...+. +.|++++|++.+  +|+++||+|+|||+|++|..|. .++.|+||||||+||.+|+|+.+|+..   
T Consensus        18 ~~~~~G~~~l~~~~~g~~~~lvv~~d~~~~v~A~~~~C~H~g~~l~~~~-~~~~~~Cp~Hg~~Fd~~G~~~~~Pa~~---   93 (127)
T d1rfsa_          18 KTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRVVRGPAPL---   93 (127)
T ss_dssp             HHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCEEESSCCS---
T ss_pred             cccCCCcceeeeeecCCceEEEEEeCCCCEEEEEcCCCCCCCCCccCcc-cCCeEEcCCCCeEECCCCCCCcCCCCC---
Confidence            344566654444 567777666654  4589999999999999999876 456899999999999999999999854   


Q ss_pred             cccccCCceEEcCeEEEcCCCC
Q 017058          145 VKIKSLPCFEQEGMIWIWPGDE  166 (378)
Q Consensus       145 ~~l~~~~v~~~~G~I~v~~~~~  166 (378)
                       .|++|++++.+|.|||....+
T Consensus        94 -~L~~~~v~v~~g~i~v~~~~~  114 (127)
T d1rfsa_          94 -SLALAHCDVDDGKVVFVPWTE  114 (127)
T ss_dssp             -CCCEEEEEEETTEEEEEECCS
T ss_pred             -CcceEeEEEECCEEEEEcCCc
Confidence             699999999999999986543

>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Arsenite oxidase Rieske subunit
species: Alcaligenes faecalis [TaxId: 511]

Probab=99.75  E-value=3.3e-19  Score=147.22  Aligned_cols=89  Identities=20%  Similarity=0.293  Sum_probs=76.2

Q ss_pred             EEEecCCCCCCCeEEEEE--CCeeEEEEEe---------CCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-
Q 017058           63 PVAFSTDLKDDTMVPFDC--FEEPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-  130 (378)
Q Consensus        63 ~v~~~~el~~g~~~~~~~--~g~~vvv~R~---------~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-  130 (378)
                      .|+.+++|++|+++.+..  .+.+.+++|.         .||+++||+|+|||+|++|+.+. .++.|+||||||+||. 
T Consensus        10 ~v~~~~~l~~~~p~~f~yp~~~~p~~lVr~g~~v~~~~g~~g~i~A~~~~CpH~g~~l~~~~-~~~~i~Cp~Hg~~Fd~~   88 (133)
T d1g8kb_          10 AVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYDS-SSKTFSCPCHFTEFDAE   88 (133)
T ss_dssp             EEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEET-TTTEEECTTTCCEEEGG
T ss_pred             heEEHHHCCCCCCEEEeccCCCCCEEEEEcCCceeEEECCCCEEEEEehhcCCCCcccccCc-ccCEEECCCCCeEEecC
Confidence            599999999999999885  6889999985         36899999999999999999765 5678999999999995 


Q ss_pred             -CCceeecCCccccccccccCCceEEc
Q 017058          131 -DGKCEKMPSTQLRNVKIKSLPCFEQE  156 (378)
Q Consensus       131 -~G~~~~~P~~~~~~~~l~~~~v~~~~  156 (378)
                       +|+++..|+..    .|+.|++++.+
T Consensus        89 ~~G~~~~gPa~~----~L~~~~v~ve~  111 (133)
T d1g8kb_          89 KAGQMICGEATA----DLPRVLLRYDA  111 (133)
T ss_dssp             GTTEEEESSCSS----CCCEEEEEEET
T ss_pred             CCceEeCCCCCC----CCCeEeEEEEC
Confidence             69999999854    47777776654

>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from the cytochrome b6f complex, soluble domain
species: Mastigocladus laminosus [TaxId: 83541]

Probab=99.72  E-value=1.3e-18  Score=144.19  Aligned_cols=91  Identities=19%  Similarity=0.317  Sum_probs=70.5

Q ss_pred             CCCCC-eEEEEECCee--EEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCccccccc
Q 017058           70 LKDDT-MVPFDCFEEP--WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVK  146 (378)
Q Consensus        70 l~~g~-~~~~~~~g~~--vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~  146 (378)
                      .++|+ .....+.|++  +++.|+.+|+++||+|+|||+|++|+.|.. ++.|+||||||+||.+|+|+..|..    ..
T Consensus        28 ~~~g~~~l~~~~~g~~~~~~v~~~~~g~~~A~~~~C~H~G~~l~~g~~-~~~~~Cp~Hg~~Fd~~G~~~~gPa~----~~  102 (134)
T d2e74d1          28 HNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDETGKVIRGPAP----LS  102 (134)
T ss_dssp             SCSTTCEEEECGGGCEEEEC-----CCCSEEEECBCTTTCCBCCBCTT-TSCEEETTTTEEECSSSCBCSSSCC----SC
T ss_pred             cCCCceEeeeecCCCceEEEEEeCCCCcEEEEeccccCCEEEcccccc-CCccCCCCCCcEECCCCCEEeCCCC----CC
Confidence            34444 3334445666  455577789999999999999999999874 4688999999999999999999975    36


Q ss_pred             cccCCceEEcCeEEEcCCC
Q 017058          147 IKSLPCFEQEGMIWIWPGD  165 (378)
Q Consensus       147 l~~~~v~~~~G~I~v~~~~  165 (378)
                      |++|++++.+|.|||....
T Consensus       103 L~~y~v~v~~~~i~V~p~~  121 (134)
T d2e74d1         103 LALCHATVQDDNIVLTPWT  121 (134)
T ss_dssp             CCEEEEECCTTSCEEEECC
T ss_pred             cceeeEEEECCEEEEeCCc
Confidence            9999999999999997643

>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Soluble Rieske protein
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=4.3e-16  Score=132.09  Aligned_cols=67  Identities=19%  Similarity=0.303  Sum_probs=60.3

Q ss_pred             cEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC--CCceeecCCccccccccccCCceEEcCeEEEcCC
Q 017058           94 IPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  164 (378)
Q Consensus        94 ~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~--~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~  164 (378)
                      .++||+|+|+|+||+|+.+...++.|.||||||+||.  .|+++..|+.    ..|+.|++++++|.|||.-+
T Consensus        79 ~i~A~~~~CtH~g~~l~~~~~~~~~~~Cp~Hgs~FD~~~gg~v~~gPa~----~~L~~~~~~~~~g~i~v~~d  147 (156)
T d1nyka_          79 GVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGE  147 (156)
T ss_dssp             TEEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSS
T ss_pred             cEEEEcccCcccccccccccccCCeeeccccceEEecCCCceEeCCCCC----CCCCEEEEEEECCEEEEeec
Confidence            4899999999999999999999999999999999995  5888988874    36999999999999999643

>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=5.9e-13  Score=108.27  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             ecCCCCCCCeEEEEECCeeEEEEEeC--------------------------CCcEEEEccCCCCCCCCCCCccccCCee
Q 017058           66 FSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGSVNEGRI  119 (378)
Q Consensus        66 ~~~el~~g~~~~~~~~g~~vvv~R~~--------------------------~G~~~a~~n~CpHrg~~L~~g~~~~~~l  119 (378)
                      ..++|++|+.+++.--|+|+.|+|..                          ++++.++..+|+|.||.+.......+.+
T Consensus        11 Dis~l~pG~~~~V~WrGkPVfI~~Rt~e~i~~~~~~~~~~l~dp~~~~~r~~~~~~~v~~~~CtHlGC~~~~~~~~~~~~   90 (129)
T d3cx5e1          11 NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGW   90 (129)
T ss_dssp             EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEETTTTEE
T ss_pred             ehhhCCCCCeEEEEeCCceEEEEecCHHHhhhccccccccccccccchhccccccEEEEEeeccCcceeeeeccCcCCeE
Confidence            57888999999999999999887642                          4789999999999999998766666889


Q ss_pred             ecCCCCeEEcCCCceeecCCccccccccccCCceEEcCeEEE
Q 017058          120 QCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI  161 (378)
Q Consensus       120 ~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v  161 (378)
                      .|||||.+||.+|+.+..|+..    .|..+|+...++-|.|
T Consensus        91 ~CPCHgs~fd~~G~v~~GPA~~----~L~~~~~~~~~~~i~i  128 (129)
T d3cx5e1          91 FCPCHGSHYDISGRIRKGPAPL----NLEIPAYEFDGDKVIV  128 (129)
T ss_dssp             EETTTTEEECTTCCEEESSCCS----CCCCCCEEEETTEEEE
T ss_pred             EEcCcCCCCCCCCCEEeCCCCC----CCCCCcEEEECCEEEE
Confidence            9999999999999999998753    6999999999887765

>d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

Probab=99.35  E-value=6.2e-12  Score=116.12  Aligned_cols=198  Identities=13%  Similarity=0.134  Sum_probs=108.5

Q ss_pred             EcCeEEEcCCCCC--CCCCCCCCCC--CCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCC---CCCc----
Q 017058          155 QEGMIWIWPGDEP--PTATIPCLLP--PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG---WSVP----  223 (378)
Q Consensus       155 ~~G~I~v~~~~~~--~~~~l~~~~~--~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~---~~~~----  223 (378)
                      .+|++||++++.+  |.+.+|.++.  .++..+ ......++|||-..+||.+|++|+ |+|.++....   ...+    
T Consensus         3 ~~~~~~~~~~~~~~~~~p~~p~~p~~~~~~~~~-~~~~~~~~~NWlQ~~En~iD~aH~-fLH~~s~~~~~~d~~~~~g~~   80 (279)
T d1z01a2           3 AHDLPFRFPERSEQFPHPLWPSSPSVLDDNAVV-HGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLL   80 (279)
T ss_dssp             GGGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEE-EEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEE
T ss_pred             ccCCceecCCccccCCCCCCCCCCcccCCCceE-EEEEEEeecchhhhhhcCcChhhe-eeecccccccccccccccccc
Confidence            3688999987653  2233444332  234433 345678999999999999999998 9998753210   0000    


Q ss_pred             ----ceeeeecCCCCCCceecC------------------------CCCcceecCCeeEEEeeeecCCCCcCCCcccccc
Q 017058          224 ----SLVKFLTPASGLQGYWDP------------------------YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCA  275 (378)
Q Consensus       224 ----~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~  275 (378)
                          .....+.......+..+.                        +.....+..|+.++..   ..|.           
T Consensus        81 ~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~v~---~~p~-----------  146 (279)
T d1z01a2          81 PTSDDCIAVVEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVE---NWPE-----------  146 (279)
T ss_dssp             ECSTTSEEEECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEE---TCSS-----------
T ss_pred             cccccccceeeccCCCcceeeeeccccccceeecccCceecccccccccccceecCceeecc---CCCC-----------
Confidence                000011111111111100                        0011223345443221   0111           


Q ss_pred             ceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHH---HHHHH-HHhHHHhhhHHHHHHHHhhccCCC-CcCCcccC
Q 017058          276 THLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQ---YLWRH-FAEQVLNEDLRLVLGQQERMNNGA-NVWNLPVG  350 (378)
Q Consensus       276 ~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~V~~ED~~ile~qq~~l~~g~-~~~~l~~~  350 (378)
                      ..+.++...+|+++++|++++.+++.+........+..   ..+.. ....|..||..++|+|++-..... ...|.+..
T Consensus       147 ~~~~~~~w~VPIDD~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qD~~a~es~gpi~~~~~drt~E~L~~  226 (279)
T d1z01a2         147 EHVVQYEWYVPITDDTHEYWEILVRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQLVA  226 (279)
T ss_dssp             TTCEEEEEEEESSSSEEEEEEEEEEECCSHHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCCCG
T ss_pred             CCceEEEEEcccCCCcEEEEEEEeecCCChhhhhHHHHHHHHhhcccccCCCchhhHHHHHccCcccccCCCCccccccc
Confidence            12344556699999999988776665432111111101   11111 124477899999999998765432 23467889


Q ss_pred             CCHHHHHHHHHHHHHHcC
Q 017058          351 YDKLGVRYRLWRDALEKG  368 (378)
Q Consensus       351 aD~~~v~~Rr~l~~l~~g  368 (378)
                      +|+++++|||++.+..++
T Consensus       227 sD~~Iv~~Rrll~~~~r~  244 (279)
T d1z01a2         227 TDISPITWRKLASRWNRG  244 (279)
T ss_dssp             GGHHHHHHHHHHHHHCSC
T ss_pred             ccHHHHHHHHHHHHHHHh
Confidence            999999999998876544

>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=5.5e-12  Score=101.90  Aligned_cols=91  Identities=18%  Similarity=0.292  Sum_probs=76.3

Q ss_pred             ecCCCCCCCeEEEEECCeeEEEEEeC--------------------------CCcEEEEccCCCCCCCCCCCccccCCee
Q 017058           66 FSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGSVNEGRI  119 (378)
Q Consensus        66 ~~~el~~g~~~~~~~~g~~vvv~R~~--------------------------~G~~~a~~n~CpHrg~~L~~g~~~~~~l  119 (378)
                      ..++|++|+.+++.--|+||.|.|..                          ++++.|+..+|+|.||.......+.+.+
T Consensus         8 DlS~lepG~~~~V~WrGkPvfV~rRt~e~i~~~~~~~~~~l~dp~~~~~r~~~~~~~~~~~~CtHlGC~~~~~~~~~~~f   87 (127)
T d1riea_           8 KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGY   87 (127)
T ss_dssp             EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCTTTEEE
T ss_pred             ehhhCCCCCEEEEEECCceeEEEecCHHHhhhhhccchhhhcCccccccccccceEEEEEeccCCCCceeecccccCCeE
Confidence            56788899999999999999998742                          6889999999999999876655555789


Q ss_pred             ecCCCCeEEcCCCceeecCCccccccccccCCceEEc-CeEE
Q 017058          120 QCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIW  160 (378)
Q Consensus       120 ~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~-G~I~  160 (378)
                      .|||||.+||.+|+.+.+|+.    ..|..+|+...+ +.|-
T Consensus        88 ~CPCHgs~fd~~Grv~~GPAp----~~L~~p~~~~~~d~~v~  125 (127)
T d1riea_          88 YCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVI  125 (127)
T ss_dssp             EETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEE
T ss_pred             EecCcCCcCCCCCCEEcCCCC----CCCCCCcEEEeCCCEEE
Confidence            999999999999999999974    368888887775 4443

>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske protein II (SoxF)
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.01  E-value=1.4e-10  Score=101.11  Aligned_cols=68  Identities=22%  Similarity=0.420  Sum_probs=56.8

Q ss_pred             eCCCcEEEEccCCCCCCCCCCCcc-----------ccCCeeecCCCCeEEcC--CCceeecCCccccccccccCCceEE-
Q 017058           90 GKDGIPGCVQNTCAHRACPLHLGS-----------VNEGRIQCPYHGWEYST--DGKCEKMPSTQLRNVKIKSLPCFEQ-  155 (378)
Q Consensus        90 ~~~G~~~a~~n~CpHrg~~L~~g~-----------~~~~~l~CpyHgw~f~~--~G~~~~~P~~~~~~~~l~~~~v~~~-  155 (378)
                      +.+|+|.||+++|+|.||++....           ..++.|.||+||++||.  +|+++..|+..    .|..+++++. 
T Consensus        80 Gp~~~ivA~s~iCtHlGC~~~~~~~~~~~~~~~~~~~~~~i~CpcHgS~FD~~~gG~v~~GPA~~----pLp~v~Le~d~  155 (202)
T d1jm1a_          80 GPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPR----PLPIVILDYDS  155 (202)
T ss_dssp             TTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCS----CCCBEEEEECT
T ss_pred             CCCCeEEEEeCcCCCCCCcccccccccccccccccCCCCEEEccCcCCEEcCCCCCeEeCCCCCC----CcCccEEEEeC
Confidence            357899999999999999997531           24678999999999995  59999999854    5899999876 


Q ss_pred             -cCeEEE
Q 017058          156 -EGMIWI  161 (378)
Q Consensus       156 -~G~I~v  161 (378)
                       .|.||+
T Consensus       156 ~~g~iyA  162 (202)
T d1jm1a_         156 STGDIYA  162 (202)
T ss_dssp             TTCEEEE
T ss_pred             CCCeEEE
Confidence             499994

>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

Probab=98.33  E-value=2.5e-06  Score=73.47  Aligned_cols=192  Identities=16%  Similarity=0.190  Sum_probs=107.4

Q ss_pred             CCCCCCCceEeeEEEEEEecChhhhhhcccccCCCCCcCccccc---CCCCCc-----c-----eeeee-cCCCCCCcee
Q 017058          174 CLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA---KGWSVP-----S-----LVKFL-TPASGLQGYW  239 (378)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~---~~~~~~-----~-----~~~~~-~~~~~~~~~~  239 (378)
                      .++. .+..+ .....++.+||.+.+||.+|..|+ |+|+.+.-   ..+..|     .     ..... ....+++|..
T Consensus        10 ~fLd-~d~v~-~G~~r~~~aNWRla~ENGFD~~Hi-~iHkds~~v~~~d~~lPlG~~P~~~~~~~~~~~~ed~~gPKGv~   86 (242)
T d2de6a2          10 NFLD-DDMEI-LGKNQIIKSNWRLAVENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVY   86 (242)
T ss_dssp             TTTC-TTEEE-EEEEEEESSCHHHHHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEE
T ss_pred             cccC-CCcee-eccccccccceEEeeccCcCcccE-EEecCCceEEeccccccccceecCCCceEEEEeccCCCCCcchh
Confidence            3443 34443 356788999999999999999999 99987642   111111     0     11111 1223444433


Q ss_pred             cCCC--------C--cceec-----CCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchh
Q 017058          240 DPYP--------I--DMEFR-----PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS  304 (378)
Q Consensus       240 ~~~~--------~--~~~~~-----~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~  304 (378)
                      +-+.        .  ..+..     ..+.+...+++--||-+.....  ...+++++-..+|+++++.+|+..+.+.-..
T Consensus        87 ~l~~~~~~Pv~e~~~~g~~~~~~~~g~~~~~~~~SiwLPGVL~Ve~~--P~p~~~qyEwYVPId~~~h~Y~q~l~k~~~t  164 (242)
T d2de6a2          87 DLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPF--PNPDMMQFEWYVPIDENTHYYFQTLGKPCAN  164 (242)
T ss_dssp             ECGGGTCEEECEEEETTEEEEECEECSBCCCCEEEEETTTEEEEESC--SSTTCEEEEEEEEEETTEEEEEEEEEEECSS
T ss_pred             hcccccceeeccCccCcceeeccccCCccCceeeEEEccceeEecCC--CCCCceEEEEEEEecCCcEEEEEEEEeecCC
Confidence            2110        0  00000     0000001112222221110000  0135677777899999999999877653221


Q ss_pred             hccCchh---HHHHHH-HHHhHHHhhhHHHHHHHHhhccCCC-CcCCcccCCCHHHHHHHHHHHHHHcCCC
Q 017058          305 VLKHVPF---MQYLWR-HFAEQVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGAK  370 (378)
Q Consensus       305 ~~~~~~~---~~~~~~-~~~~~V~~ED~~ile~qq~~l~~g~-~~~~l~~~aD~~~v~~Rr~l~~l~~g~~  370 (378)
                      ..+...|   ++..|+ ...+.+.++|...-|++|.=+..+. -..|.....|..++++||...+..+|..
T Consensus       165 ~ee~~~F~~efe~~wk~~al~gFNddDi~AReamq~FY~dd~GW~~E~L~~pD~~Ii~WRklaS~~nRGIq  235 (242)
T d2de6a2         165 DEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQ  235 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHTTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCSCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHhhhhhccCCCCcHhhccCccccHHHHHHHHHHhccccC
Confidence            1111111   122222 2356788999999999999777643 2336788999999999999999988763

>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, C-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=98.03  E-value=5.4e-06  Score=75.29  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             CceEee-EEEEEEecChhhhhhccc-ccCCCCCcCcccc
Q 017058          180 GFEIHA-EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTF  216 (378)
Q Consensus       180 ~~~~~~-~~~~~~~~nwk~~~EN~~-D~~H~~~vH~~~~  216 (378)
                      +.++.. ..++.++||||+.+||++ |.||.+++|.+..
T Consensus        25 glev~~g~~r~~i~~NWKl~~EN~~~D~YH~~~tH~S~~   63 (279)
T d2b1xa2          25 GLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMV   63 (279)
T ss_dssp             CEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHH
T ss_pred             ceEEecCceEEEEcCCCchhhhcCCCcCCCccccchhHH
Confidence            455554 467899999999999986 9999999998754

>d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=98.00  E-value=3.9e-06  Score=76.30  Aligned_cols=37  Identities=19%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             CceEee-EEEEEEecChhhhhhccc-ccCCCCCcCcccc
Q 017058          180 GFEIHA-EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTF  216 (378)
Q Consensus       180 ~~~~~~-~~~~~~~~nwk~~~EN~~-D~~H~~~vH~~~~  216 (378)
                      +.++.. ..++.++||||+.+||++ |.||++++|++.+
T Consensus        25 ~lev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~H~s~~   63 (287)
T d2bmoa2          25 GLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAAL   63 (287)
T ss_dssp             CEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHH
T ss_pred             CeEEEcceEEEEECCCcchHhhcccccccCCCccchhHH
Confidence            455544 457889999999999986 9999999998654

>d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Biphenyl dioxygenase large subunit BphA1, C-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=97.76  E-value=1e-05  Score=73.31  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=29.2

Q ss_pred             CceEe-eEEEEEEecChhhhhhccc-ccCCCCCcCccc
Q 017058          180 GFEIH-AEIVMELPIEHGLLLDNLL-DLAHAPFTHTST  215 (378)
Q Consensus       180 ~~~~~-~~~~~~~~~nwk~~~EN~~-D~~H~~~vH~~~  215 (378)
                      +.++. ...++.++||||+.+||+. |.||++++|...
T Consensus        25 g~ev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~H~~~   62 (281)
T d1ulia2          25 GTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLS   62 (281)
T ss_dssp             CEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHH
T ss_pred             ceEEecCceEEEecCCCeehhhcCCCCCccchhhhhhH
Confidence            45554 3457889999999999987 999999999764

>d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Large subunit of cumene dioxygenase cumA1
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.51  E-value=6.9e-05  Score=67.68  Aligned_cols=37  Identities=11%  Similarity=0.092  Sum_probs=28.7

Q ss_pred             CCceEe-eEEEEEEecChhhhhhccc-ccCCCCCcCccc
Q 017058          179 SGFEIH-AEIVMELPIEHGLLLDNLL-DLAHAPFTHTST  215 (378)
Q Consensus       179 ~~~~~~-~~~~~~~~~nwk~~~EN~~-D~~H~~~vH~~~  215 (378)
                      .++++. ...++.++||||+.+||+. |.||+..+|...
T Consensus        24 ~g~ev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~hh~~   62 (279)
T d1wqla2          24 AVTQVITGMQKTVIPCNWKFAAEQFCSDMYHAGTMAHLS   62 (279)
T ss_dssp             TCEEECSCCEEEEESSCHHHHHHHHHHBCHHHHTTTTHH
T ss_pred             CceEEeccceEeeecCCceehhhcCCCCCcChhhhhhhh
Confidence            345544 3457889999999999985 999998888653