Citrus Sinensis ID: 017061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MKLLKRATQYTTTTFYSPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Secondary Structure (PSIPRED)
cHHHHHHHcccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEccccHHHHHHHcccHHHHHHHHcccccccccEEEcccccHHHHHHHHHHHHHHcccEEEEccccEEEEEcccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccccccccEEcHHHccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccHccccEEEEEccccccHHHHHHHHHHHHcccEEEEEccccEEEccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEcccHHHHHHHccHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHccccEEEEcccEEEEcccccccEEcccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccEEEEcc
Coil and Loop (DISEMBL)
mkllkratqyttttfysptsrgyfkkfsigskscffstsseepeLMNFMNYLDSLKnfeksgvpkgagtdsddgfdlGRMNRLMdrlgnphskfktvhiagtkgkgsTAAFLSSILRaegysvgcytsphIKTIRERMnvgrlnrpvSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAglggardatniisssGLAASVITTIGEEHTAALGGSLETIAMAKSGIikygrplvlggpflphiEHILRDEASLMCSQVVSAYDAGIRATINglsmfndrpcqscdIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Flexible Loop (DISEMBL)
mkllkratqyttttfysptsrgyfKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSgvpkgagtdsddgfDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Low Complexity Region (SEG)
MKLLKRAtqyttttfysptsRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNaltatcaalclRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Disordered region (IsUnstruct)
********QYTTTTFYSPTSRGYFKKFSIGSKSCFFS********MNFMNYLD****************************************FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL***
Disordered Region (DISOPRED)
********QYTTTTFYSP****************************NFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Disordered Region (DISEMBL)
MKLLKRATQYTTTTFYSPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Disordered Region (DISPRO)
*KLLKRATQYTTTTFYSPTSRGYFKKFSIGSKSCFF****EEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLLKRATQYTTTTFYSPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q05865	430	Folylpolyglutamate syntha	yes	no	0.669	0.588	0.363	2e-39
A6H751	585	Folylpolyglutamate syntha	yes	no	0.595	0.384	0.332	7e-28
Q924L9	587	Folylpolyglutamate syntha	yes	no	0.497	0.320	0.350	5e-27
Q05932	587	Folylpolyglutamate syntha	yes	no	0.449	0.289	0.377	6e-27
P15925	428	Folylpolyglutamate syntha	yes	no	0.513	0.453	0.342	1e-26
Q12676	427	Folylpolyglutamate syntha	yes	no	0.460	0.407	0.355	2e-26
P48760	587	Folylpolyglutamate syntha	yes	no	0.410	0.264	0.385	5e-26
Q8W035	492	Folylpolyglutamate syntha	no	no	0.526	0.404	0.363	2e-25
Q8K9X3	418	Bifunctional protein FolC	yes	no	0.510	0.461	0.377	9e-24
O74742	505	Probable folylpolyglutama	yes	no	0.468	0.350	0.342	9e-24

>sp|Q05865|FOLC_BACSU Folylpolyglutamate synthase OS=Bacillus subtilis (strain 168) GN=folC PE=3 SV=2

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 149/278 (53%), Gaps = 25/278 (8%)

Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           LGRM +LM RLG+P  K +  H+AGT GKGST AF+ S+L+  GY+VG +TSP+I T  E
Sbjct: 24  LGRMKQLMARLGHPEKKIRAFHVAGTNGKGSTVAFIRSMLQEAGYTVGTFTSPYIITFNE 83

Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNH-VDI 195
           R++V  +  P+S +    L +++K  ++   + E G  T FE++TA AF  FA+ H VD 
Sbjct: 84  RISVNGI--PISDEEWTALVNQMKPHVEALDQTEYGQPTEFEIMTACAFLYFAEFHKVDF 141

Query: 196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLV 255
            + E GLGG  D+TN++       +VIT+IG +H   LG ++E IA  K+GIIK G P+V
Sbjct: 142 VIFETGLGGRFDSTNVVEP---LLTVITSIGHDHMNILGNTIEEIAGEKAGIIKEGIPIV 198

Query: 256 LGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGL---SMFNDRPCQSCDIIVQAE 312
                 P    ++R EA    +   S +DA +      L     F+ +  + C       
Sbjct: 199 TAVT-QPEALQVIRHEAERHAAPFQSLHDACVIFNEEALPAGEQFSFKTEEKC------- 250

Query: 313 RDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQ 350
                     D++  +IG HQ  NA  +  AA  L  +
Sbjct: 251 --------YEDIRTSLIGTHQRQNAALSILAAEWLNKE 280

Conversion of folates to polyglutamate derivatives. It prefers 5,10-methylenetetrahydrofolate, rather than 10-formyltetrahydrofolate as folate substrate.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 7

>sp|A6H751|FOLC_BOVIN Folylpolyglutamate synthase, mitochondrial OS=Bos taurus GN=FPGS PE=2 SV=1

 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 127/265 (47%), Gaps = 40/265 (15%)

Query: 93  KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKAL 152
           +   +HI GTKGKGST AF   ILR+ G   G ++SPH+  +RER+ +    +P+S++  
Sbjct: 92  QLNIIHITGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQVRERIRIN--GQPISSELF 149

Query: 153 NCLFHKIKGVLDEAIRLENGCIT---HFEVLTAMAFALFAQNHVDIAVIEAGLGGARDAT 209
              F ++   L+E  + ++ C++   +F  LT MAF +F Q  VD+AV+E G+GGA D T
Sbjct: 150 TKHFWRLYHRLEET-KDDSSCVSMPGYFRFLTLMAFHVFLQEKVDLAVLEVGIGGAYDCT 208

Query: 210 NIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP-LVLGGPFLPHIEHIL 268
           NII    +    IT++G +HT  LG ++E IA  K GI K G P   +  P  P    +L
Sbjct: 209 NIIRKPVVCG--ITSLGIDHTGLLGDTMEKIAWQKGGIFKSGVPAFTVLQPDEPLA--VL 264

Query: 269 RDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCM 328
           RD A  +   +                      C     + +    L L +E        
Sbjct: 265 RDRAQQISCPLYL--------------------CPPLQALEEGGPPLTLGLE-------- 296

Query: 329 IGNHQLHNALTATCAALCLRDQGGY 353
            G HQ  NA  A   A C   Q GY
Sbjct: 297 -GEHQRSNAALALQVARCWLQQKGY 320

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q924L9|FOLC_CRIGR Folylpolyglutamate synthase, mitochondrial OS=Cricetulus griseus GN=FPGS PE=2 SV=1

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/214 (35%), Positives = 114/214 (53%), Gaps = 26/214 (12%)

Query: 92  SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSA-- 149
           ++   +H+ GTKGKGST AF   ILR+ G   G ++SPH+  +RER+ +    +P+S   
Sbjct: 94  NQLNIIHVTGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQVRERIRIN--GKPISPEL 151

Query: 150 --KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD 207
             K    L+H+++   D++         +F  LT MAF +F Q  VD+AV+E G+GGA D
Sbjct: 152 FTKHFWRLYHQLEEFKDDS---HVAMPAYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYD 208

Query: 208 ATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP----LVLGGPFLPH 263
            TNII    +    ++++G +HT+ LG ++E IA  K GI K G P    L   GP    
Sbjct: 209 CTNIIRKPVVCG--VSSLGMDHTSLLGDTVEKIAWQKGGIFKPGVPAFTVLQPEGPLA-- 264

Query: 264 IEHILRDEAS------LMCSQVVSAYDAGIRATI 291
              +LRD A        +C  + +  D G+  T+
Sbjct: 265 ---VLRDRAQQTSCPLYLCPPLEALEDGGLPLTL 295

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis.

Cricetulus griseus (taxid: 10029)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q05932|FOLC_HUMAN Folylpolyglutamate synthase, mitochondrial OS=Homo sapiens GN=FPGS PE=1 SV=3

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 18/188 (9%)

Query: 93  KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKAL 152
           +   +H+ GTKGKGST AF   ILR+ G   G ++SPH+  +RER+ +    +P+S +  
Sbjct: 95  RLNIIHVTGTKGKGSTCAFTECILRSYGLKTGFFSSPHLVQVRERIRIN--GQPISPELF 152

Query: 153 NCLFHKIKGVLDEAIRLENGCIT---HFEVLTAMAFALFAQNHVDIAVIEAGLGGARDAT 209
              F ++   L+E    +  C++   +F  LT MAF +F Q  VD+AV+E G+GGA D T
Sbjct: 153 TKYFWRLYHRLEETK--DGSCVSMPPYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYDCT 210

Query: 210 NIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP----LVLGGPFLPHIE 265
           NII    +    ++++G +HT+ LG ++E IA  K GI K G P    L   GP      
Sbjct: 211 NIIRKPVVCG--VSSLGIDHTSLLGDTVEKIAWQKGGIFKQGVPAFTVLQPEGPLA---- 264

Query: 266 HILRDEAS 273
            +LRD A 
Sbjct: 265 -VLRDRAQ 271

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Unsubstitued reduced folates are the preferred substrates. Metabolizes methotrexate (MTX) to polyglutamates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|P15925|FOLC_LACCA Folylpolyglutamate synthase OS=Lactobacillus casei GN=fgs PE=1 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 22/216 (10%)

Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47

Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105

Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
           L+   + + +  +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+      SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162

Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
           +T +  +H   LG ++  IA  K+GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG 198

Conversion of folates to polyglutamate derivatives. It prefers 5,10-methylenetetrahydrofolate, rather than 10-formyltetrahydrofolate as folate substrate.

Lactobacillus casei (taxid: 1582)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q12676|FOLD_YEAST Folylpolyglutamate synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FOL3 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 6/180 (3%)

Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R+ +L++ LGNP +  + +HIAGT GKGS   +LSS+L+ + Y +G +T+PH+  + +
Sbjct: 7   LSRITKLLEHLGNPQNSLRVLHIAGTNGKGSVCTYLSSVLQQKSYQIGKFTTPHLVHVTD 66

Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIA 196
            + +   N+P+  +     +  I+  L+   +  +   T FE+LT  AF  F        
Sbjct: 67  SITIN--NKPIPLER----YQNIRLQLEALNKSHSLKCTEFELLTCTAFKYFYDVQCQWC 120

Query: 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVL 256
           VIE GLGG  DATN+I  +  A   IT I  +H + LG +L  I+  K+GII  G P  +
Sbjct: 121 VIEVGLGGRLDATNVIPGANKACCGITKISLDHESFLGNTLSEISKEKAGIITEGVPFTV 180

Conversion of folates to polyglutamate derivatives.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|P48760|FOLC_MOUSE Folylpolyglutamate synthase, mitochondrial OS=Mus musculus GN=Fpgs PE=1 SV=3

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 11/166 (6%)

Query: 92  SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSA-- 149
           ++   +H+ GTKGKGST AF   ILR  G   G ++SPH+  +RER+ +    +P+S   
Sbjct: 94  NRLNIIHVTGTKGKGSTCAFTERILRNYGLKTGFFSSPHMVQVRERIRIN--GKPISPEL 151

Query: 150 --KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD 207
             K   CL+++++   D++        ++F  LT MAF +F Q  VD+AV+E G+GGA D
Sbjct: 152 FTKHFWCLYNQLEEFKDDS---HVSMPSYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAFD 208

Query: 208 ATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP 253
            TNII    +    ++++G +HT+ LG ++E IA  K GI K G P
Sbjct: 209 CTNIIRKPVVCG--VSSLGIDHTSLLGDTVEKIAWQKGGIFKPGVP 252

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Dihydrofolate, tetrahydrofolate, 5,10-methylenetetrahydrofolate, 10-formyltetrahydrofolate and 5-formyltetrahydrofolate are the best substrates. Folic acid and 5-methyltetrahydrofolate can also act as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q8W035|FPGS3_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS3 PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 110/212 (51%), Gaps = 13/212 (6%)

Query: 87  LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE--RMNVGRLN 144
           L +  S+ K +H+AGTKGKGST  F  SILR  G   G +TSPH+  +RE  R+N   ++
Sbjct: 51  LEDAVSQMKIIHVAGTKGKGSTCTFAESILRCYGLRTGLFTSPHLIDVRERFRLNGIEIS 110

Query: 145 RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGG 204
           +        C FHK+K    E    E    T+F  L  +AF +F    VD+ ++E GLGG
Sbjct: 111 QEKFVNYFWCCFHKLK----EKTSNEVPMPTYFCFLALLAFKIFTTEQVDVVILEVGLGG 166

Query: 205 ARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP-LVLGGPFLPH 263
             DATN+I    +    I+++G +H   LG +L  IA  K+GI K G P   +  P    
Sbjct: 167 RFDATNVIQKPVVCG--ISSLGYDHMEILGYTLAEIAAEKAGIFKSGVPAFTVAQP--DE 222

Query: 264 IEHILRDEASLMCS--QVVSAYDAGIRATING 293
              +L ++AS +    QVV   D+  R  + G
Sbjct: 223 AMRVLNEKASKLEVNLQVVEPLDSSQRLGLQG 254

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q8K9X3|FOLC_BUCAP Bifunctional protein FolC OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=folC PE=3 SV=1

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 16/209 (7%)

Query: 70  DSDDGFDLGRMNRLMDRLG--NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYT 127
           D  D  +L  +  +  +LG  N  S F TV   GT GKG+T A L  +L   GY VG YT
Sbjct: 19  DKKDRKNLFELKLIAKKLGLLNLKSFFFTV--GGTNGKGTTCAMLEKLLLDSGYQVGLYT 76

Query: 128 SPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFAL 187
           SPH+    ER+ V  L   +S K      H    ++ +A +  N  +T+FE +T  A  L
Sbjct: 77  SPHLINYSERIKVNGL--YLSEKD-----HIFSFLIIDAEK-GNVSLTYFEFITLSALFL 128

Query: 188 FAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGI 247
           F+Q  +DI ++E GLGG  DATNII S     SVIT IG +HT+ LG    +I   KSGI
Sbjct: 129 FSQYSLDIIILEVGLGGRLDATNIIDSD---LSVITNIGIDHTSCLGTDRISIGREKSGI 185

Query: 248 IKYGRPLVLGGPFLP-HIEHILRDEASLM 275
            + G+  V+G   +P  ++ I +++ +++
Sbjct: 186 FRKGKIAVIGEKNIPISVDEIAKEKKTIL 214

Conversion of folates to polyglutamate derivatives.

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 2

>sp|O74742|FOLE_SCHPO Probable folylpolyglutamate synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=met7 PE=2 SV=1

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 108/190 (56%), Gaps = 13/190 (6%)

Query: 92  SKFKTVHIAGTKGKGSTAAFLSSIL--------RAEGYSVGCYTSPHIKTIRERMNVGRL 143
           ++   +H+AGTKGKGST AF SSIL        R+    +G YTSPH++++ ER+ +   
Sbjct: 77  NRLNVIHVAGTKGKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLN-- 134

Query: 144 NRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLG 203
            +P+S +     F  +   L+ A+  ++    +F  LT MA+ +F   +VD A+IE G+G
Sbjct: 135 GKPISQELFTKYFFDVWERLENAVGSDSEKPMYFRFLTLMAWHVFISENVDAAIIEVGIG 194

Query: 204 GARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPH 263
           G  D+TN+I      A+ +T++G +HT+ LG ++  IA  K+GI K    + L     P 
Sbjct: 195 GEYDSTNLIEKP--YATAVTSLGLDHTSLLGNTIAEIAWQKAGIYKES-AIALTCEQAPE 251

Query: 264 IEHILRDEAS 273
             ++L++ A+
Sbjct: 252 AMNVLKNRAA 261

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
359490535	536	PREDICTED: folylpolyglutamate synthase-l	0.854	0.602	0.730	1e-136
147838709	637	hypothetical protein VITISV_018995 [Viti	0.854	0.507	0.727	1e-135
224116906	478	folylpolyglutamate synthase [Populus tri	0.838	0.663	0.738	1e-133
255545058	552	tetrahydrofolylpolyglutamate synthase, p	0.838	0.574	0.753	1e-131
356533471	536	PREDICTED: folylpolyglutamate synthase-l	0.894	0.630	0.674	1e-128
356551520	536	PREDICTED: LOW QUALITY PROTEIN: folylpol	0.830	0.585	0.703	1e-124
325516272	485	folylpolyglutamate synthase [Solanum pen	0.843	0.657	0.683	1e-122
449463470	548	PREDICTED: folylpolyglutamate synthase-l	0.878	0.605	0.654	1e-120
297805500	530	hypothetical protein ARALYDRAFT_330375 [	0.825	0.588	0.657	1e-115
17976703	530	dihydrofolate synthetase [Arabidopsis th	0.902	0.643	0.612	1e-114

>gi|359490535|ref|XP_002267695.2| PREDICTED: folylpolyglutamate synthase-like [Vitis vinifera] gi|302143688|emb|CBI22549.3| unnamed protein product [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/327 (73%), Positives = 275/327 (84%), Gaps = 4/327 (1%)

Query: 25  KKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLM 84
           K+  +G K  F    S EPEL +F+NYLD+LKN+EK GVPK AGTDS  GFDLGRMNRLM
Sbjct: 10  KRTLLGFKRSF----STEPELKDFLNYLDNLKNYEKCGVPKDAGTDSSHGFDLGRMNRLM 65

Query: 85  DRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN 144
           DRLGNP + FK VHIAGTKGKGSTAAFL++ILR EGY+VGCYTSPH++TIRER+++G+L 
Sbjct: 66  DRLGNPETGFKAVHIAGTKGKGSTAAFLANILRTEGYAVGCYTSPHVRTIRERISLGKLG 125

Query: 145 RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGG 204
            PVSAKALNCLFH+IK +LDEA+ LENG ++HFE+LTAMAF LFAQ +VD+AVIEAGLGG
Sbjct: 126 EPVSAKALNCLFHRIKPILDEAVALENGRLSHFEILTAMAFKLFAQENVDVAVIEAGLGG 185

Query: 205 ARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHI 264
           ARDATNIISSSGLAA+VITTIGEEH AALGGSLE+IAMAKSGIIK G PLVLGGPFLPHI
Sbjct: 186 ARDATNIISSSGLAAAVITTIGEEHLAALGGSLESIAMAKSGIIKQGCPLVLGGPFLPHI 245

Query: 265 EHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDV 324
           EHI  D+AS MCS VVSA   G R+ + G+S  N +P QSCDI+++ ERD KL IEL DV
Sbjct: 246 EHIFLDKASSMCSPVVSASGPGNRSAVKGVSKSNGKPFQSCDIVIEVERDFKLFIELFDV 305

Query: 325 KLCMIGNHQLHNALTATCAALCLRDQG 351
           KL M+G HQL NA TATC ALCLRD+G
Sbjct: 306 KLQMLGIHQLQNAATATCVALCLRDKG 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838709|emb|CAN76202.1| hypothetical protein VITISV_018995 [Vitis vinifera]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/327 (72%), Positives = 274/327 (83%), Gaps = 4/327 (1%)

Query: 25  KKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLM 84
           K+  +G K  F    S EPEL +F+NYLD+LKN+EK GVPK AGTDS  GFDLGRMNRLM
Sbjct: 10  KRTLLGFKRSF----STEPELKDFLNYLDNLKNYEKCGVPKDAGTDSSHGFDLGRMNRLM 65

Query: 85  DRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN 144
           D LGNP + FK VHIAGTKGKGSTAAFL++ILR EGY+VGCYTSPH++TIRER+++G+L 
Sbjct: 66  DXLGNPZTGFKAVHIAGTKGKGSTAAFLANILRTEGYAVGCYTSPHVRTIRERISLGKLG 125

Query: 145 RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGG 204
            PVSAKALNCLFH+IK +LDEA+ LENG ++HFE+LTAMAF LFAQ +VD+AVIEAGLGG
Sbjct: 126 EPVSAKALNCLFHRIKPILDEAVALENGRLSHFEILTAMAFKLFAQENVDVAVIEAGLGG 185

Query: 205 ARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHI 264
           ARDATNIISSSGLAA+VITTIGEEH AALGGSLE+IAMAKSGIIK G PLVLGGPFLPHI
Sbjct: 186 ARDATNIISSSGLAAAVITTIGEEHLAALGGSLESIAMAKSGIIKQGCPLVLGGPFLPHI 245

Query: 265 EHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDV 324
           EHI  D+AS MCS VVSA   G R+ + G+S  N +P QSCDI+++ ERD KL IEL DV
Sbjct: 246 EHIFLDKASSMCSPVVSASGPGNRSAVKGVSKSNGKPFQSCDIVIEVERDFKLFIELFDV 305

Query: 325 KLCMIGNHQLHNALTATCAALCLRDQG 351
           KL M+G HQL NA TATC ALCLRD+G
Sbjct: 306 KLQMLGIHQLQNAATATCVALCLRDKG 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116906|ref|XP_002331843.1| folylpolyglutamate synthase [Populus trichocarpa] gi|222875081|gb|EEF12212.1| folylpolyglutamate synthase [Populus trichocarpa]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/317 (73%), Positives = 265/317 (83%)

Query: 35  FFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKF 94
            FS  +EEPE   F++YLDSLKN+EK GVPK AGTDSDDG DLGRM RLMDRLGNP SKF
Sbjct: 5   LFSKYTEEPEPKEFIDYLDSLKNYEKLGVPKDAGTDSDDGLDLGRMRRLMDRLGNPQSKF 64

Query: 95  KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNC 154
           K VH+AGTKGKGSTAA+LS+ILRAEGYSVGCYTSPH+ +IRER+++G+   PVS K LN 
Sbjct: 65  KAVHVAGTKGKGSTAAYLSNILRAEGYSVGCYTSPHMMSIRERISLGQSGNPVSTKTLNK 124

Query: 155 LFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS 214
           LFH IK  LDEAI+LENG +THFEVLTA AF L A+  VDIAVIEAGLGGARDATNI+ S
Sbjct: 125 LFHMIKPKLDEAIQLENGSLTHFEVLTATAFTLMAEEKVDIAVIEAGLGGARDATNILCS 184

Query: 215 SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASL 274
           S LAASVITTIGEEH AALGGSLE+IA+AKSGIIKYGRP+VLGGPFL H++ ILRD+AS+
Sbjct: 185 SELAASVITTIGEEHLAALGGSLESIAVAKSGIIKYGRPVVLGGPFLSHVDRILRDKASV 244

Query: 275 MCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQL 334
           MCS VVSA DAGIR +I GL + + RPCQ  DI++Q ERD  L IEL DVKL M+G HQL
Sbjct: 245 MCSPVVSASDAGIRTSIKGLIILDGRPCQLSDIMIQVERDFPLFIELSDVKLRMLGRHQL 304

Query: 335 HNALTATCAALCLRDQG 351
           HNA +A C ALCLRDQG
Sbjct: 305 HNASSAACVALCLRDQG 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545058|ref|XP_002513590.1| tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis] gi|223547498|gb|EEF48993.1| tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/317 (75%), Positives = 274/317 (86%)

Query: 35  FFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKF 94
            FST SE  EL +FMNYLDSL NFEKSGVPKGAGTDSD+GFDLGRM RLMDRLGNPHSKF
Sbjct: 32  LFSTLSEAAELNDFMNYLDSLNNFEKSGVPKGAGTDSDEGFDLGRMRRLMDRLGNPHSKF 91

Query: 95  KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNC 154
           K VHIAGTKGKGSTAAFLS+ILRA+GYSVGCYTSPHI TIRERM++G+L +PVS  ALN 
Sbjct: 92  KAVHIAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHIVTIRERMSIGKLGKPVSPMALNS 151

Query: 155 LFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS 214
            FH+I+  LDEAI+LENGC++HFEVLTA+AF+LFAQ +VDIA+IEAGLGGARDATNI+ S
Sbjct: 152 HFHQIRQKLDEAIQLENGCLSHFEVLTAIAFSLFAQENVDIAIIEAGLGGARDATNILCS 211

Query: 215 SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASL 274
           S LA S+ITTIGEEH  ALGGSLE+IAMAK+GIIK GRPL+LGGPFLP IE ILRD+ASL
Sbjct: 212 SQLATSIITTIGEEHLMALGGSLESIAMAKAGIIKRGRPLILGGPFLPDIERILRDKASL 271

Query: 275 MCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQL 334
           M + VVSA D+GIR TI GLSMF+ R CQ CDI ++ ++ L L IEL D+++ M+G+HQL
Sbjct: 272 MLAPVVSASDSGIRTTIKGLSMFDGRHCQLCDIKIRVKKALNLFIELSDLEMRMLGSHQL 331

Query: 335 HNALTATCAALCLRDQG 351
            NA TA CAALCLRDQG
Sbjct: 332 QNAATAACAALCLRDQG 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533471|ref|XP_003535287.1| PREDICTED: folylpolyglutamate synthase-like [Glycine max]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/338 (67%), Positives = 266/338 (78%)

Query: 38  TSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTV 97
           T S   E+ +F++YLDSLKN+EKSGVPKGAGTDS DGFDLGRM RLM+R GNPHSKFK V
Sbjct: 19  TLSSHSEMKDFLDYLDSLKNYEKSGVPKGAGTDSSDGFDLGRMRRLMERFGNPHSKFKAV 78

Query: 98  HIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH 157
           HIAGTKGKGSTAAF+S+ILR EGYSVGCYTSPHI TIRER+ +G+   PVSAK LN LF 
Sbjct: 79  HIAGTKGKGSTAAFVSNILRNEGYSVGCYTSPHILTIRERILLGKSGHPVSAKLLNDLFR 138

Query: 158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGL 217
           +IK  +D+A++ ENGCI+HFEV T MAF LFA  +VDIAVIEAGLGGARDATNIISSSGL
Sbjct: 139 RIKPDIDQAMKEENGCISHFEVFTTMAFLLFADENVDIAVIEAGLGGARDATNIISSSGL 198

Query: 218 AASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCS 277
            ASVITT+GEEH AALGGSLETIAMAK+GIIK  RPLVLGGPF+PHIE I+RD+A  M S
Sbjct: 199 VASVITTVGEEHLAALGGSLETIAMAKAGIIKQDRPLVLGGPFVPHIERIIRDKAVAMDS 258

Query: 278 QVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNA 337
            VVSAYD G + T+   S+ N RPCQ CDI++Q  +D+K+S +L DVKL M+G+HQL NA
Sbjct: 259 PVVSAYDTGNKCTVKSFSIRNGRPCQICDILIQVVKDMKMSCKLHDVKLQMLGDHQLQNA 318

Query: 338 LTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL 375
            TATC AL LR+ G  +       G  + +      FL
Sbjct: 319 ATATCVALVLRNLGWSISDESIRYGLEDTYLLGRSQFL 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551520|ref|XP_003544122.1| PREDICTED: LOW QUALITY PROTEIN: folylpolyglutamate synthase-like [Glycine max]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/314 (70%), Positives = 256/314 (81%)

Query: 38  TSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTV 97
           T S   E+ +F++YLDSLKN+EKSGVPKGAGTDS DGFDLGRM  LM+R GNPHSKFK V
Sbjct: 19  TLSSHSEMKDFLDYLDSLKNYEKSGVPKGAGTDSSDGFDLGRMRCLMERFGNPHSKFKAV 78

Query: 98  HIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH 157
           HIAGTKGK STAAF+S+ILR EGYSVGCYTSPHI TIRER+ +G+    VSAK LN LF 
Sbjct: 79  HIAGTKGKASTAAFVSNILRNEGYSVGCYTSPHILTIRERILLGKSGHLVSAKLLNDLFR 138

Query: 158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGL 217
           +IK  +D+A++ ENGCI+HFEV T MAF LFA  +VD AVIEAGLGGARDATNIISSSGL
Sbjct: 139 RIKPDIDQAMKEENGCISHFEVFTTMAFLLFADENVDFAVIEAGLGGARDATNIISSSGL 198

Query: 218 AASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCS 277
            ASVITT+GEEH AALGGSLETIAMAK+GIIK  RPLVLGGPF+PHIE I+RD+A  M S
Sbjct: 199 VASVITTVGEEHLAALGGSLETIAMAKAGIIKQDRPLVLGGPFVPHIERIIRDKAVAMNS 258

Query: 278 QVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNA 337
            VVSAYD G + T+   S+ N RPCQ CDI++Q  +D+K+S +L DVKL M+G+HQL NA
Sbjct: 259 PVVSAYDTGNKCTMKSFSILNGRPCQICDILIQVVKDMKMSCKLHDVKLQMLGDHQLQNA 318

Query: 338 LTATCAALCLRDQG 351
            TATC AL LR+ G
Sbjct: 319 ATATCVALVLRNLG 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325516272|gb|ADZ24714.1| folylpolyglutamate synthase [Solanum pennellii]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/319 (68%), Positives = 259/319 (81%)

Query: 36  FSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFK 95
           FST  E+PEL   M +LDSLKNFEK+GVPKGAGTDS+DGFDLGRM RLM+ LGNP S+FK
Sbjct: 33  FSTLREDPELDEMMEFLDSLKNFEKAGVPKGAGTDSEDGFDLGRMRRLMELLGNPQSRFK 92

Query: 96  TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155
           TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI+TIRER+ +G+   PVSAK LN  
Sbjct: 93  TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIQTIRERITLGKWGEPVSAKVLNHH 152

Query: 156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSS 215
           F+  + V++ A++LENG ++HFEV TA+AF+LFA+ + +IAV+EAGLGGARDATN+IS S
Sbjct: 153 FNTRREVIERAVKLENGYLSHFEVFTAVAFSLFAEENTEIAVVEAGLGGARDATNVISGS 212

Query: 216 GLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLM 275
            LA S+ITT+GEEH  ALGGSLE+IA+AKSGI+K GRPLV+GGPF+P IE ILR +AS M
Sbjct: 213 DLAISIITTVGEEHLDALGGSLESIAVAKSGIVKNGRPLVIGGPFVPSIECILRRKASSM 272

Query: 276 CSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLH 335
            S VVSA D G R+ + G    +  P Q CDI++Q E+D  LSIELL VKL M+G HQL 
Sbjct: 273 SSPVVSASDPGNRSALRGFCEVSGIPRQLCDIVLQIEKDYDLSIELLGVKLRMLGAHQLQ 332

Query: 336 NALTATCAALCLRDQGGYL 354
           NA+TATCAALCL  QG  L
Sbjct: 333 NAVTATCAALCLNKQGWSL 351

Source: Solanum pennellii

Species: Solanum pennellii

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463470|ref|XP_004149457.1| PREDICTED: folylpolyglutamate synthase-like [Cucumis sativus] gi|449521387|ref|XP_004167711.1| PREDICTED: folylpolyglutamate synthase-like [Cucumis sativus]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/336 (65%), Positives = 263/336 (78%), Gaps = 4/336 (1%)

Query: 30  GSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGN 89
           GSK CF +T SE+  +  FM YLDSLKN+EK GVP+G+GTDSDDGFDLGRM RLM+RLGN
Sbjct: 35  GSKQCF-ATHSEDQHMTQFMEYLDSLKNYEKLGVPRGSGTDSDDGFDLGRMRRLMERLGN 93

Query: 90  PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSA 149
           P S+FK +HIAGTKGKGSTAAFLS+ILR EGYSVGCYTSPHI+TIRER+++GR    VS 
Sbjct: 94  PQSRFKAIHIAGTKGKGSTAAFLSNILRVEGYSVGCYTSPHIETIRERISLGRSGDMVSG 153

Query: 150 KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDAT 209
           KALN LF + K V D+++ LENG ++HFEVLTAMAF+LFAQ  VD+AVIEAGLGGARDAT
Sbjct: 154 KALNSLFKRNKEVFDQSVELENGHLSHFEVLTAMAFSLFAQEDVDVAVIEAGLGGARDAT 213

Query: 210 NIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILR 269
           NII SS LAA+VIT+IGEEH AALGGSLE+IA AK+GIIK G P +LGGPFLP IE+ILR
Sbjct: 214 NIICSSELAAAVITSIGEEHVAALGGSLESIATAKAGIIKRGCPTILGGPFLPRIEYILR 273

Query: 270 DEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI 329
           D+A  M S V+SA D G R+TI G+++ N    Q CDI++Q + +    IELLDV L M+
Sbjct: 274 DKALSMSSPVISASDPGNRSTIKGVNLLNGGLSQCCDIVIQIDNEF---IELLDVNLRML 330

Query: 330 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFRE 365
           G HQL NA TATC  L LR+ G  +  +   SG  +
Sbjct: 331 GPHQLQNAATATCVILTLRNLGWRISDASIRSGLEQ 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805500|ref|XP_002870634.1| hypothetical protein ARALYDRAFT_330375 [Arabidopsis lyrata subsp. lyrata] gi|297316470|gb|EFH46893.1| hypothetical protein ARALYDRAFT_330375 [Arabidopsis lyrata subsp. lyrata]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/315 (65%), Positives = 257/315 (81%), Gaps = 3/315 (0%)

Query: 38  TSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTV 97
           +S+E+PEL +F+ +L+SLKN+EKSGVPKGAGTDS DGFDL RM RLM RL NPHSK+K V
Sbjct: 38  SSTEDPELRDFVGFLESLKNYEKSGVPKGAGTDSGDGFDLSRMKRLMLRLHNPHSKYKVV 97

Query: 98  HIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH 157
           H+AGTKGKGST+AF+S+ILRA GYSVGCY+SPHI +I+ER++      PVSA  LN  F+
Sbjct: 98  HVAGTKGKGSTSAFVSNILRAGGYSVGCYSSPHILSIKERISCN--GEPVSASTLNDHFY 155

Query: 158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGL 217
            IK +L+++I+ ENG ++HFE+LT +AF+LF + +VDIAVIEAGLGGARDATN+I SS L
Sbjct: 156 SIKPILEQSIQEENGSLSHFEILTGIAFSLFEKENVDIAVIEAGLGGARDATNVIESSNL 215

Query: 218 AASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCS 277
           AASVITTIGEEH AALGGSLE+IA AKSGIIK+GRP+VLGGPFLPHIE ILR +A+ M S
Sbjct: 216 AASVITTIGEEHMAALGGSLESIAEAKSGIIKHGRPVVLGGPFLPHIEGILRSKAASMLS 275

Query: 278 QVVSAYDAGIRATINGLSMFND-RPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHN 336
            V+ A + G  ++I G+   N    CQSCDI++Q E+D K  +EL DV L M+G+HQL N
Sbjct: 276 SVILASNIGSSSSIKGIINKNGFGLCQSCDIVIQNEKDDKPIVELSDVNLRMLGHHQLQN 335

Query: 337 ALTATCAALCLRDQG 351
           A+TATC +LCLRDQG
Sbjct: 336 AVTATCVSLCLRDQG 350

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17976703|emb|CAC80838.1| dihydrofolate synthetase [Arabidopsis thaliana]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/346 (61%), Positives = 271/346 (78%), Gaps = 5/346 (1%)

Query: 9   QYTTTTFY--SPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKG 66
            ++T ++   SP  R       I +++    +S+E+PEL +F+ +L+SLKN+EKSGVPKG
Sbjct: 7   HFSTNSYIKISPRMRRISAANLISNRNLSTISSTEDPELRDFVGFLESLKNYEKSGVPKG 66

Query: 67  AGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126
           AGTDSDDGFDLGRM RLM RL NPH K+K VH+AGTKGKGST+AFLS+ILRA GYSVGCY
Sbjct: 67  AGTDSDDGFDLGRMKRLMLRLRNPHYKYKVVHVAGTKGKGSTSAFLSNILRAGGYSVGCY 126

Query: 127 TSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFA 186
           +SPHI +I+ER++      PVSA  LN LF+ +K +L+++I+ ENG ++HFE+LT +AF+
Sbjct: 127 SSPHILSIKERISCN--GEPVSASTLNDLFYSVKPILEQSIQEENGSLSHFEILTGIAFS 184

Query: 187 LFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
           LF + +VDIAVIEAGLGGARDATN+I SS LAASVITTIGEEH AALGGSLE+IA AKSG
Sbjct: 185 LFEKENVDIAVIEAGLGGARDATNVIESSNLAASVITTIGEEHMAALGGSLESIAEAKSG 244

Query: 247 IIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRP-CQSC 305
           IIK+GRP+VLGGPFLPHIE ILR +A+ + S V+ A + G  ++I G+   N    CQSC
Sbjct: 245 IIKHGRPVVLGGPFLPHIEGILRSKAASVSSSVILASNIGSSSSIKGIINKNGIGLCQSC 304

Query: 306 DIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQG 351
           DI++Q E+D +  +EL DV L M+G+HQL NA+TATC +LCLRDQG
Sbjct: 305 DIVIQNEKDDQPIVELSDVNLRMLGHHQLQNAVTATCVSLCLRDQG 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2177916	530	GLA1 "GLOBULAR ARREST1" [Arabi	0.849	0.605	0.617	3e-101
UNIPROTKB|Q3AF86	432	folC "Folylpolyglutamate synth	0.560	0.490	0.383	5.2e-33
TIGR_CMR|CHY_0335	432	CHY_0335 "folylpolyglutamate s	0.560	0.490	0.383	5.2e-33
TIGR_CMR|DET_0016	439	DET_0016 "folylpolyglutamate s	0.539	0.464	0.403	1.6e-31
TIGR_CMR|APH_0747	429	APH_0747 "folylpolyglutamate s	0.455	0.400	0.413	1.3e-30
TIGR_CMR|BA_4689	433	BA_4689 "FolC bifunctional pro	0.465	0.406	0.390	6.2e-30
TIGR_CMR|NSE_0715	442	NSE_0715 "folylpolyglutamate s	0.481	0.411	0.417	1.3e-29
CGD|CAL0000131	430	orf19.6908 [Candida albicans (	0.449	0.395	0.417	5.6e-29
UNIPROTKB|Q59S44	430	CaO19.6908 "Putative uncharact	0.449	0.395	0.417	5.6e-29
TIGR_CMR|GSU_2368	424	GSU_2368 "folC bifunctional pr	0.441	0.393	0.425	9.1e-29

TAIR|locus:2177916 GLA1 "GLOBULAR ARREST1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 200/324 (61%), Positives = 253/324 (78%)

Query:    29 IGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLG 88
             I +++    +S+E+PEL +F+ +L+SLKN+EKSGVPKGAGTDSDDGFDLGRM RLM RL 
Sbjct:    29 ISNRNLSTISSTEDPELRDFVGFLESLKNYEKSGVPKGAGTDSDDGFDLGRMKRLMLRLR 88

Query:    89 NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVS 148
             NPH K+K VH+AGTKGKGST+AFLS+ILRA GYSVGCY+SPHI +I+ER++      PVS
Sbjct:    89 NPHYKYKVVHVAGTKGKGSTSAFLSNILRAGGYSVGCYSSPHILSIKERISCN--GEPVS 146

Query:   149 AKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDA 208
             A  LN LF+ +K +L+++I+ ENG ++HFE+LT +AF+LF + +VDIAVIEAGLGGARDA
Sbjct:   147 ASTLNDLFYSVKPILEQSIQEENGSLSHFEILTGIAFSLFEKENVDIAVIEAGLGGARDA 206

Query:   209 TNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHIL 268
             TN+I SS LAASVITTIGEEH AALGGSLE+IA AKSGIIK+GRP+VLGGPFLPHIE IL
Sbjct:   207 TNVIESSNLAASVITTIGEEHMAALGGSLESIAEAKSGIIKHGRPVVLGGPFLPHIEGIL 266

Query:   269 RDEASLMCSQVVSAYDAGIRATINGLSMFNDRP-CQSCDIIVQAERDLKLSIELLDVKLC 327
             R +A+ + S V+ A + G  ++I G+   N    CQSCDI++Q E+D +  +EL DV L 
Sbjct:   267 RSKAASVSSSVILASNIGSSSSIKGIINKNGIGLCQSCDIVIQNEKDDQPIVELSDVNLR 326

Query:   328 MIGNHQLHNXXXXXXXXXXXRDQG 351
             M+G+HQL N           RDQG
Sbjct:   327 MLGHHQLQNAVTATCVSLCLRDQG 350

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=RCA;TAS

GO:0008841 "dihydrofolate synthase activity" evidence=IGI

UNIPROTKB|Q3AF86 folC "Folylpolyglutamate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 89/232 (38%), Positives = 127/232 (54%)

Query:    46 MNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGK 105
             MN+   L+ L N  K G+  G          LGR++ L+ RLGNP  K K VHI GT GK
Sbjct:     1 MNYNEALEFLSNLTKFGINLG----------LGRISELLKRLGNPQEKVKVVHIGGTNGK 50

Query:   106 GSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE 165
             GS  +  +S+L   GY  G +TSPH+    ER  +    + +S + ++ L  +I+ +L  
Sbjct:    51 GSVCSLTASVLAEAGYKTGLFTSPHLSRYTERYKIN--GKEISPERVSQLVTEIRPLL-- 106

Query:   166 AIRLENGCI--THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVIT 223
                +E G    T FEV TAMAF  FA+  VD  V+E GLGG  D+TN++S   + A  IT
Sbjct:   107 LAMVEEGFEHPTEFEVSTAMAFKYFAEEEVDFVVLEVGLGGLIDSTNVVSRPEVVA--IT 164

Query:   224 TIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG--GPFLPHIEHILRDEAS 273
              +G +H   LG ++  IA  K+GIIK G P+V    G  L  I+ + +++ S
Sbjct:   165 NVGMDHMDYLGNTITEIARVKAGIIKPGVPVVTAATGEALEVIKEVAKEKNS 216

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0046901 "tetrahydrofolylpolyglutamate biosynthetic process" evidence=ISS

TIGR_CMR|CHY_0335 CHY_0335 "folylpolyglutamate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 89/232 (38%), Positives = 127/232 (54%)

Query:    46 MNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGK 105
             MN+   L+ L N  K G+  G          LGR++ L+ RLGNP  K K VHI GT GK
Sbjct:     1 MNYNEALEFLSNLTKFGINLG----------LGRISELLKRLGNPQEKVKVVHIGGTNGK 50

Query:   106 GSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE 165
             GS  +  +S+L   GY  G +TSPH+    ER  +    + +S + ++ L  +I+ +L  
Sbjct:    51 GSVCSLTASVLAEAGYKTGLFTSPHLSRYTERYKIN--GKEISPERVSQLVTEIRPLL-- 106

Query:   166 AIRLENGCI--THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVIT 223
                +E G    T FEV TAMAF  FA+  VD  V+E GLGG  D+TN++S   + A  IT
Sbjct:   107 LAMVEEGFEHPTEFEVSTAMAFKYFAEEEVDFVVLEVGLGGLIDSTNVVSRPEVVA--IT 164

Query:   224 TIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG--GPFLPHIEHILRDEAS 273
              +G +H   LG ++  IA  K+GIIK G P+V    G  L  I+ + +++ S
Sbjct:   165 NVGMDHMDYLGNTITEIARVKAGIIKPGVPVVTAATGEALEVIKEVAKEKNS 216

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

TIGR_CMR|DET_0016 DET_0016 "folylpolyglutamate synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 86/213 (40%), Positives = 124/213 (58%)

Query:    75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTI 134
             +DL R+  L+ RL +PH    +VH+AGTKGKGSTAA ++S++ A GY  G YTSPH+   
Sbjct:    17 YDLRRVVELLLRLHSPHIGIPSVHLAGTKGKGSTAALIASVMSAAGYRTGLYTSPHLLDF 76

Query:   135 RERMNVGRLNRPVSAKA-LNCLFHKIKGVLDEA-IRLENGCITHFEVLTAMAFALFAQNH 192
             RER+   RL+  + +KA L  +   I  +++E   R   G IT FEV+T +AF  F +  
Sbjct:    77 RERI---RLDGKMISKAHLVRIMDYISPMVEEMNARTCLGKITSFEVMTVLAFEFFHRQQ 133

Query:   193 VDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252
                 VIE GLGG  DATN+I+ +    SV+T I  +HT  LG SL  I+  K+GIIK+  
Sbjct:   134 AFFQVIETGLGGRLDATNVITPN---LSVLTPISLDHTEVLGDSLAKISAEKAGIIKHFV 190

Query:   253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDA 285
             P+V      P    ++R+      S+++   D+
Sbjct:   191 PVVSAAQ-RPEAMAVIRERCLKTGSKLIEVTDS 222

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

TIGR_CMR|APH_0747 APH_0747 "folylpolyglutamate synthase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 314 (115.6 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
 Identities = 77/186 (41%), Positives = 108/186 (58%)

Query:    73 DGFDLGRMNRLMDRLGNPHSKFK-TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI 131
             +G  L RM  ++ R+GNP +     VH+AGT GKGST AFLSSIL+A G  V  YTSPH+
Sbjct:    16 EGLTLDRMREILCRIGNPENNLPPVVHVAGTNGKGSTIAFLSSILQAAGMRVHVYTSPHL 75

Query:   132 KTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA-IRLENGCITHFEVLTAMAFALFAQ 190
                 ER+    LN    +K  +   H+I   L+E   + +   +T FE  TA A   F++
Sbjct:    76 LEFNERIV---LN---GSKISDNHLHEI---LEECRSKCDGMTVTFFEATTAAALLAFSR 126

Query:   191 NHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
              H DI ++E G+GG  DATN++       ++IT+I  +HT  LG ++E IA  K+GI+K 
Sbjct:   127 VHADIVLLEVGMGGRLDATNVVMP---ILTIITSISYDHTCFLGDTVELIAGEKAGILKE 183

Query:   251 GRPLVL 256
             G   VL
Sbjct:   184 GVSCVL 189

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

TIGR_CMR|BA_4689 BA_4689 "FolC bifunctional protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 71/182 (39%), Positives = 106/182 (58%)

Query:    77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
             L RM  +++ LGNP    K VH+AGT GKGST  ++  +L    Y VG +TSP+I+T  E
Sbjct:    24 LERMRWMLEELGNPERHIKCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNE 83

Query:   137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQ-NHVDI 195
             R++V     P++ + +  L   +K V+++    + G  T FE++T MA   F + N  D+
Sbjct:    84 RISVN--GTPIADEEITELVKMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDV 141

Query:   196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLV 255
              + E GLGG  D+TN+I       ++IT IG +H   LG +L  IA  K+GIIK G P++
Sbjct:   142 VLFETGLGGRFDSTNVIHP---VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVI 198

Query:   256 LG 257
              G
Sbjct:   199 TG 200

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0008841 "dihydrofolate synthase activity" evidence=ISS

TIGR_CMR|NSE_0715 NSE_0715 "folylpolyglutamate synthase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 81/194 (41%), Positives = 114/194 (58%)

Query:    64 PKGAGTDSDDGFDLGRMNRLMDRLGNPH-SKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122
             P GA     D   L R+ R++ RLG+PH S    +H+AGT GKGST AFL +IL+A GYS
Sbjct:    17 PLGARPTEID-LKLHRVTRVLKRLGSPHLSVPPVIHVAGTNGKGSTIAFLRAILQASGYS 75

Query:   123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTA 182
             V  YTSPH++   ER+ V R NR +S K L  +   ++      I  +   +T FE  T 
Sbjct:    76 VNVYTSPHLRYFNERI-VLR-NREISDKFLYDVLEDVR------IASQGEKLTFFEGTTL 127

Query:   183 MAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAM 242
              A   F++++ D ++IE G+GG  DATN+       A++IT I  +HT+ LG ++  IA 
Sbjct:   128 AAILAFSRSNADFSLIETGMGGRLDATNVFPKP--IATIITAIDFDHTSYLGATIAQIAY 185

Query:   243 AKSGIIKYGRPLVL 256
              K+GIIK G P V+
Sbjct:   186 EKAGIIKEGVPCVV 199

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

CGD|CAL0000131 orf19.6908 [Candida albicans (taxid:5476)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 78/187 (41%), Positives = 109/187 (58%)

Query:    77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
             L R+ +L+  L NP + +K++HIAGT GKGST A++SS+L       G +TSPHI    +
Sbjct:     7 LQRIAKLLGHLNNPQNAYKSIHIAGTNGKGSTLAYISSVLTEAKIKNGKFTSPHIINYHD 66

Query:   137 RMNVGRLNRPVSA-KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
              +++     P S    +N    KI   L+    LE  C T FE+LTA AF +FA   +++
Sbjct:    67 CISINNQTYPKSKFDRINQQVIKINNDLN----LE--C-TEFEILTATAFKIFALEEIEM 119

Query:   196 AVIEAGLGGARDATNII---------SSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
             A++E G+GG  DATN++         S  G+ A+ IT IG +H   LGG+L  IA  KSG
Sbjct:   120 ALVEVGVGGRLDATNVLIPYGETIGTSKGGVVATAITKIGLDHEKLLGGTLLAIAKEKSG 179

Query:   247 IIKYGRP 253
             IIKYG P
Sbjct:   180 IIKYGIP 186

GO:0008841 "dihydrofolate synthase activity" evidence=IGI

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IGI

GO:0005737 "cytoplasm" evidence=IGI

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q59S44 CaO19.6908 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 78/187 (41%), Positives = 109/187 (58%)

Query:    77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
             L R+ +L+  L NP + +K++HIAGT GKGST A++SS+L       G +TSPHI    +
Sbjct:     7 LQRIAKLLGHLNNPQNAYKSIHIAGTNGKGSTLAYISSVLTEAKIKNGKFTSPHIINYHD 66

Query:   137 RMNVGRLNRPVSA-KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
              +++     P S    +N    KI   L+    LE  C T FE+LTA AF +FA   +++
Sbjct:    67 CISINNQTYPKSKFDRINQQVIKINNDLN----LE--C-TEFEILTATAFKIFALEEIEM 119

Query:   196 AVIEAGLGGARDATNII---------SSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
             A++E G+GG  DATN++         S  G+ A+ IT IG +H   LGG+L  IA  KSG
Sbjct:   120 ALVEVGVGGRLDATNVLIPYGETIGTSKGGVVATAITKIGLDHEKLLGGTLLAIAKEKSG 179

Query:   247 IIKYGRP 253
             IIKYG P
Sbjct:   180 IIKYGIP 186

GO:0005737 "cytoplasm" evidence=IGI

GO:0006761 "dihydrofolate biosynthetic process" evidence=IGI

GO:0008841 "dihydrofolate synthase activity" evidence=IGI

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IGI

TIGR_CMR|GSU_2368 GSU_2368 "folC bifunctional protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 77/181 (42%), Positives = 107/181 (59%)

Query:    77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
             L R+  L+ RLGNP  + + VH+AGT GKGSTAAFL+SIL   GY  G +TSPH+    E
Sbjct:    22 LERIATLLQRLGNPQERLRVVHVAGTNGKGSTAAFLASILAEGGYRAGLFTSPHLTRFTE 81

Query:   137 RMNVGRLNRPVSAKALNCLFHKIKG-VLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
             R  +        A A      ++ G VL  A     G  T FEV+TAMA   F +  VD 
Sbjct:    82 RFRINGTEIAEEAAA------RVAGQVLASA---PEGT-TFFEVVTAMALLHFVEEGVDA 131

Query:   196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLV 255
             A++EAG+GG  DAT+  +++G+  +VI  +  +H   LG ++  IA  K+G+I+ GRP+V
Sbjct:   132 AILEAGMGGGADATS--AATGIL-TVIAPVALDHCEWLGETIPAIAREKAGLIRAGRPVV 188

Query:   256 L 256
             L
Sbjct:   189 L 189

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0008841 "dihydrofolate synthase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00006492001	SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (536 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00030018001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (483 aa)	•	•				•	•		0.990
	GSVIVG00036344001	RecName- Full=Thymidylate synthase; EC=2.1.1.45; (284 aa)						•	•		0.934
	GSVIVG00014568001	RecName- Full=Thymidylate synthase; EC=2.1.1.45; (284 aa)						•	•		0.932
	GSVIVG00027851001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (384 aa)						•			0.899
	GSVIVG00014289001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (195 aa)	•						•		0.824
	GSVIVG00019724001	RecName- Full=Pseudouridylate synthase; EC=5.4.99.-; (304 aa)	•						•		0.816
	GSVIVG00005777001	SubName- Full=Chromosome chr3 scaffold_158, whole genome shotgun sequence; (214 aa)	•						•		0.801
	GSVIVG00001677001	SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (946 aa)	•						•		0.751
	GSVIVG00024726001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (594 aa)	•					•	•		0.701
	GSVIVG00002274001	RecName- Full=Histidinol dehydrogenase; EC=1.1.1.23;; Catalyzes the sequential NAD-dependent ox [...] (438 aa)							•		0.637

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
PLN02913	510	PLN02913, PLN02913, dihydrofolate synthetase	0.0
COG0285	427	COG0285, FolC, Folylpolyglutamate synthase [Coenzy	7e-78
TIGR01499	398	TIGR01499, folC, folylpolyglutamate synthase/dihyd	4e-72
PLN02881	530	PLN02881, PLN02881, tetrahydrofolylpolyglutamate s	2e-37
PRK10846	416	PRK10846, PRK10846, bifunctional folylpolyglutamat	7e-30
COG0770	451	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy	2e-05
TIGR01143	417	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--	2e-04
COG0769	475	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt	2e-04
PRK14016	727	PRK14016, PRK14016, cyanophycin synthetase; Provis	3e-04
TIGR02068	864	TIGR02068, cya_phycin_syn, cyanophycin synthetase	0.003

>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase

 Score =  578 bits (1492), Expect = 0.0
 Identities = 243/332 (73%), Positives = 283/332 (85%), Gaps = 4/332 (1%)

Query: 25  KKFSIGSKS----CFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRM 80
           ++ SI +        FS+S+EEPEL +F+ YLDSLKN+EKSGVPK AGTDSDDGFDLGRM
Sbjct: 2   ERISIANLRRNRNLLFSSSTEEPELGDFLRYLDSLKNYEKSGVPKDAGTDSDDGFDLGRM 61

Query: 81  NRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNV 140
            RLMDRLGNPHSKFK VH+AGTKGKGSTAAFLS+ILRA+GYSVGCYTSPH+++IRER++V
Sbjct: 62  RRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISV 121

Query: 141 GRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA 200
           G+L +PVS   LN LFH IK +LDEAI+LENG +THFEVLTA+AF LFAQ +VDIAVIEA
Sbjct: 122 GKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEA 181

Query: 201 GLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPF 260
           GLGGARDATN+I SSGLAASVITTIGEEH AALGGSLE+IA+AKSGIIK GRP+VLGGPF
Sbjct: 182 GLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPF 241

Query: 261 LPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIE 320
           LPHIE ILRD+AS M S VVSA D G+R++I G+   N +PCQSCDI+++ E+D  L IE
Sbjct: 242 LPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIE 301

Query: 321 LLDVKLCMIGNHQLHNALTATCAALCLRDQGG 352
           L DV L M+G+HQL NA+TA CAALCLRDQG 
Sbjct: 302 LSDVNLRMLGSHQLQNAVTAACAALCLRDQGW 333

Length = 510

>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]

 Score =  245 bits (628), Expect = 7e-78
 Identities = 116/308 (37%), Positives = 159/308 (51%), Gaps = 35/308 (11%)

Query: 45  LMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKG 104
           +M+     + L   E+   PK           L R++RL++RLGNP      +H+AGT G
Sbjct: 1   MMSLQELAEWLHYLEQLH-PKP-----GIDLGLERISRLLERLGNPQKSPPVIHVAGTNG 54

Query: 105 KGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN-RPVSAKALNCLFHKIKGVL 163
           KGST AFL SILR  GY VG YTSPH+ +  ER+   R+N  P+S + L   F +++   
Sbjct: 55  KGSTCAFLESILREAGYKVGVYTSPHLLSFNERI---RINGEPISDEELAAAFERVEEAA 111

Query: 164 DEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVIT 223
                L+   +T+FEVLTAMAF  FA+  VD+A++E GLGG  DATN+I       SVIT
Sbjct: 112 GS---LDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNVIEP---DVSVIT 165

Query: 224 TIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEA-SLMCSQVVSA 282
           +IG +HTA LG +LE+IA  K+GIIK G+P V+G    P   +++ + A  L     V  
Sbjct: 166 SIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVLG 225

Query: 283 YDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATC 342
            D  +    NG S                  DL L +          G+HQ+ NA  A  
Sbjct: 226 PDFQVLEEGNGFSFQGGG----------GLLDLPLPLLG--------GHHQIENAALAIA 267

Query: 343 AALCLRDQ 350
           A   L  +
Sbjct: 268 ALEALGKE 275

Length = 427

>gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase

 Score =  229 bits (587), Expect = 4e-72
 Identities = 107/277 (38%), Positives = 147/277 (53%), Gaps = 28/277 (10%)

Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L RM +L++ LGNP   +  +H+AGT GKGST AFL SILRA GY VG +TSPH+ +  E
Sbjct: 1   LERMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNE 60

Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIA 196
           R+ +     P+S + L   F +++ +L +     +   T+FE+LT +AF  FAQ  VD+A
Sbjct: 61  RIRIN--GEPISDEELAQAFEQVRPILKK----LSQQPTYFELLTLLAFLYFAQAQVDVA 114

Query: 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVL 256
           V+E GLGG  DATN+I       SVIT+IG +HT  LG +LE IA  K+GIIK G P+V 
Sbjct: 115 VLEVGLGGRLDATNVIEPL---VSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVT 171

Query: 257 GGPFLPHIEHILRDEASLMCSQV-VSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDL 315
            GP  P   ++L+ +A    + + V   D     T      F+                L
Sbjct: 172 -GPQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGAN--------LFLEPL 222

Query: 316 KLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGG 352
            LS         ++G+HQ  NA  A  A   L  Q  
Sbjct: 223 ALS---------LLGDHQAENAALALAALEVLGKQNS 250

This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]. Length = 398

>gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase

 Score =  141 bits (357), Expect = 2e-37
 Identities = 99/316 (31%), Positives = 139/316 (43%), Gaps = 59/316 (18%)

Query: 65  KGAGTDSDDGFDLGRMNRLMDRLG--NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122
           +   ++  D FD   +   +  L      S+ K +H+AGTKGKGST  F  SILR  G+ 
Sbjct: 32  RADPSNPGDQFD--LLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFR 89

Query: 123 VGCYTSPHIKTIRERMNVGRLN-RPVS-AKALN---CLFHKIKGVLDEAIRLENGCITHF 177
            G +TSPH+  +RER    RL+   +S  K L      + ++K    E + +      +F
Sbjct: 90  TGLFTSPHLIDVRERF---RLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMP----AYF 142

Query: 178 EVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSL 237
             LT +AF +F+   VD+A++E GLGG  DATN++         IT++G +H   LG +L
Sbjct: 143 RFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKP--VVCGITSLGYDHMEILGDTL 200

Query: 238 ETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEAS-LMCS-QVVSAYDAGIRATINGLS 295
             IA  K+GI K G P     P       +L + AS L    QVV   D+       GLS
Sbjct: 201 GKIAGEKAGIFKPGVP-AFTVPQPDEAMRVLEERASELGVPLQVVEPLDS------YGLS 253

Query: 296 MFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALC---LRDQGG 352
                              LKL +          G HQ  NA  A   ALC   L+  G 
Sbjct: 254 ------------------GLKLGLA---------GEHQYLNAGLAV--ALCSTWLQRTGH 284

Query: 353 YLMLSYFLSGFREEHF 368
               +   +G   E F
Sbjct: 285 EEFEALLQAGTLPEQF 300

Length = 530

>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

 Score =  118 bits (298), Expect = 7e-30
 Identities = 73/192 (38%), Positives = 104/192 (54%), Gaps = 17/192 (8%)

Query: 76  DLG--RMNRLMDRLG--NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI 131
           DLG  R++++  RL    P     TV  AGT GKG+T   L SIL A GY VG Y+SPH+
Sbjct: 29  DLGLERVSQVAARLDLLKPAPFVFTV--AGTNGKGTTCRTLESILMAAGYRVGVYSSPHL 86

Query: 132 KTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQN 191
               ER+ +    + +   A    F +I     EA R +   +T+FE  T  A  LF Q 
Sbjct: 87  VRYTERVRIQ--GQELPESAHTASFAEI-----EAARGDIS-LTYFEYGTLSALWLFKQA 138

Query: 192 HVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG 251
            +D+ ++E GLGG  DATNI+ +     +V+T+I  +HT  LG   E+I   K+GI +  
Sbjct: 139 QLDVVILEVGLGGRLDATNIVDAD---VAVVTSIALDHTDWLGPDRESIGREKAGIFRAE 195

Query: 252 RPLVLGGPFLPH 263
           +P V+G P +P 
Sbjct: 196 KPAVVGEPDMPS 207

Length = 416

>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 27/162 (16%)

Query: 194 DIAVIEAGLGGARDATNIISSSGLA---ASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
           + AV+E G         I   S +A    +VIT IGE H    G S E IA AK+ I+  
Sbjct: 156 EYAVLEMG---MNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAG 211

Query: 251 GRPLVLGGPF-LPHIEHILRDEAS-LMCSQVVS---AYDAGIRATINGLSMFNDRPCQSC 305
              L   G   L     +L++ A+ +  ++V+S         RAT   L           
Sbjct: 212 ---LRPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLD---------- 258

Query: 306 DIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCL 347
                +   L +     + +L + G H + NAL A   AL L
Sbjct: 259 --EEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALEL 298

Length = 451

>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 25/161 (15%)

Query: 194 DIAVIEAG---LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
           D AV+E G    G       I        +VIT IG  H    G SLE IA AK  I++ 
Sbjct: 127 DYAVLEMGASHPGEIAYLAEIAKPD---IAVITNIGPAHLEGFG-SLEGIAEAKGEILQG 182

Query: 251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQ 310
            +   +    +   +    D A  + ++ + ++             F     ++ DI   
Sbjct: 183 LKENGIA--VINADDPAFLDFAKRLPNRNILSFG------------FEGGDFRAADISYS 228

Query: 311 AERDLKLSI----ELLDVKLCMIGNHQLHNALTATCAALCL 347
           A      ++       +V L ++G H + NAL A   AL L
Sbjct: 229 ALGSTSFTLVTPGGEFEVSLPLLGRHNVMNALAAAALALEL 269

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 417

>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 45/269 (16%), Positives = 75/269 (27%), Gaps = 58/269 (21%)

Query: 88  GNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPV 147
           G P  K K + + GT GK +T + L+ IL+  G            T  + ++ G L    
Sbjct: 85  GLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTA-LIG----TEGDELSPGILEPTG 139

Query: 148 SAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD 207
                      +                                  +IAV+E    G   
Sbjct: 140 LTTPEALDLQNL-------------------------LRDLLDRGAEIAVMEVSSHGL-- 172

Query: 208 ATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHI 267
               +        V T +  +H     G++E    AK+                   E +
Sbjct: 173 VQGRVEGVTFDVGVFTNLSRDH-LDYHGTMEYYGAAKAV----------------LFESL 215

Query: 268 LRDEASLMCSQVVSAYDAGIRATING-----LSMFNDRP-CQSCDIIVQAER---DLKLS 318
                +++        D   R                RP      I   +       + S
Sbjct: 216 PHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPS 275

Query: 319 IELLDVKLCMIGNHQLHNALTATCAALCL 347
             + + +L + G   ++NAL A  AAL L
Sbjct: 276 GGIGEYELPLPGLFNVYNALAAVAAALAL 304

Length = 475

>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 50/159 (31%)

Query: 97  VHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156
           V + GT GK +T   ++ IL+  G  VG  T+  +      ++ G    P SA+    L 
Sbjct: 483 VAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSAR--RVLM 540

Query: 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSG 216
           +                                   V+ AV+E   GG       I   G
Sbjct: 541 NP---------------------------------DVEAAVLETARGG-------ILREG 560

Query: 217 LA-----ASVITTIGEEHTAALGG--SLETIAMAKSGII 248
           LA       V+T IGE+H   LGG  +LE +A  K  ++
Sbjct: 561 LAYDRCDVGVVTNIGEDHL-GLGGINTLEDLAKVKRVVV 598

Length = 727

>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 50/164 (30%)

Query: 97  VHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156
           V + GT GK +T   ++ IL+  G  VG  T+  +   +  +  G    P SA+    L 
Sbjct: 482 VSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARR--ILM 539

Query: 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSG 216
                                               VD AV+E   GG       I   G
Sbjct: 540 DP---------------------------------TVDAAVLETARGG-------ILREG 559

Query: 217 LA-----ASVITTIGEEHTAALGG--SLETIAMAKSGIIKYGRP 253
           LA       V+T I  +H   +G   ++E +A  K  +++   P
Sbjct: 560 LAFDRCDVGVVTNIAGDHL-GIGDINTIEDLADVKRVVVEVVLP 602

Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in E. coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. This model makes the designation as cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions [Cellular processes, Biosynthesis of natural products]. Length = 864

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
PLN02913	510	dihydrofolate synthetase	100.0
COG0285	427	FolC Folylpolyglutamate synthase [Coenzyme metabol	100.0
PLN02881	530	tetrahydrofolylpolyglutamate synthase	100.0
TIGR01499	397	folC folylpolyglutamate synthase/dihydrofolate syn	100.0
KOG2525	496	consensus Folylpolyglutamate synthase [Coenzyme tr	100.0
PRK10846	416	bifunctional folylpolyglutamate synthase/ dihydrof	100.0
PRK00139	460	murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
TIGR01143	417	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
TIGR01085	464	murE UDP-N-acetylmuramyl-tripeptide synthetase. A	100.0
PRK14093	479	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop	100.0
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	100.0
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK14022	481	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l	100.0
PRK10773	453	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	100.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
COG0770	451	MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce	99.98
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.98
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.98
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	99.97
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK11930	822	putative bifunctional UDP-N-acetylmuramoyl-tripept	99.97
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	99.97
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	99.97
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	99.97
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	99.97
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.96
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	99.96
PF08245	188	Mur_ligase_M: Mur ligase middle domain; InterPro:	99.96
PRK14016	727	cyanophycin synthetase; Provisional	99.96
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.96
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	99.96
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	99.94
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.93
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.91
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.77
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.65
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.37
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.13
PRK13705	388	plasmid-partitioning protein SopA; Provisional	96.91
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	96.67
PHA02519	387	plasmid partition protein SopA; Reviewed	96.52
PRK13869	405	plasmid-partitioning protein RepA; Provisional	95.88
cd03114	148	ArgK-like The function of this protein family is u	95.71
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	95.45
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.23
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	94.24
TIGR03172	232	probable selenium-dependent hydroxylase accessory	94.18
PRK10416	318	signal recognition particle-docking protein FtsY;	94.16
TIGR00064	272	ftsY signal recognition particle-docking protein F	93.75
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	93.7
COG3367	339	Uncharacterized conserved protein [Function unknow	93.54
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	93.4
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	93.17
PRK07667	193	uridine kinase; Provisional	93.16
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	92.84
PRK15453	290	phosphoribulokinase; Provisional	92.49
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	92.42
cd02040	270	NifH NifH gene encodes component II (iron protein)	91.96
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	91.91
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	91.86
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	91.64
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	91.52
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	91.34
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	91.27
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	91.25
PRK06761	282	hypothetical protein; Provisional	91.03
PRK13232	273	nifH nitrogenase reductase; Reviewed	90.96
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	90.92
COG2403	449	Predicted GTPase [General function prediction only	90.7
COG1663	336	LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env	90.65
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	90.39
COG4240	300	Predicted kinase [General function prediction only	90.36
PHA02518	211	ParA-like protein; Provisional	90.23
cd02117	212	NifH_like This family contains the NifH (iron prot	90.01
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	90.01
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	89.9
PRK05439	311	pantothenate kinase; Provisional	89.86
PRK14974	336	cell division protein FtsY; Provisional	89.79
PRK13235	274	nifH nitrogenase reductase; Reviewed	89.55
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	89.5
COG2894	272	MinD Septum formation inhibitor-activating ATPase	89.37
PRK10037	250	cell division protein; Provisional	89.23
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	89.05
PRK06696	223	uridine kinase; Validated	88.98
PRK13230	279	nitrogenase reductase-like protein; Reviewed	88.94
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	88.93
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	88.82
PRK13849	231	putative crown gall tumor protein VirC1; Provision	88.8
cd03116	159	MobB Molybdenum is an essential trace element in t	88.62
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	88.54
PRK05632	684	phosphate acetyltransferase; Reviewed	88.49
cd02032	267	Bchl_like This family of proteins contains bchL an	88.46
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	88.4
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	88.4
TIGR01287	275	nifH nitrogenase iron protein. This model describe	88.3
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	88.25
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	88.22
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	88.18
PRK11670	369	antiporter inner membrane protein; Provisional	87.88
PRK13236	296	nitrogenase reductase; Reviewed	87.65
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	87.64
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	87.6
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	87.58
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	87.39
PRK13234	295	nifH nitrogenase reductase; Reviewed	87.35
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	87.32
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	87.19
KOG0780	483	consensus Signal recognition particle, subunit Srp	86.8
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	86.66
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	86.62
PRK12374	231	putative dithiobiotin synthetase; Provisional	86.59
PRK13233	275	nifH nitrogenase reductase; Reviewed	86.57
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	86.52
PRK00784	488	cobyric acid synthase; Provisional	86.22
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	86.18
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	86.12
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	85.8
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	85.7
CHL00175	281	minD septum-site determining protein; Validated	85.25
KOG3022	300	consensus Predicted ATPase, nucleotide-binding [Ce	85.18
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	84.9
PRK01906	338	tetraacyldisaccharide 4'-kinase; Provisional	84.87
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	84.79
TIGR00347	166	bioD dethiobiotin synthase. Dethiobiotin synthase	84.66
PRK00771	437	signal recognition particle protein Srp54; Provisi	84.27
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	84.27
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	84.24
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	84.06
PRK13231	264	nitrogenase reductase-like protein; Reviewed	83.9
cd02036	179	MinD Bacterial cell division requires the formatio	83.89
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	83.86
PRK10818	270	cell division inhibitor MinD; Provisional	83.84
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	83.78
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	83.66
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	83.28
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	83.25
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	82.83
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	82.82
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	82.78
PLN02422	232	dephospho-CoA kinase	82.49
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	82.47
TIGR00313	475	cobQ cobyric acid synthase CobQ.	82.1
PLN02796	347	D-glycerate 3-kinase	81.99
PF02606	326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	81.95
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	81.62
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	81.4
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	81.21
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	81.2
COG1192	259	Soj ATPases involved in chromosome partitioning [C	80.96
CHL00072	290	chlL photochlorophyllide reductase subunit L	80.61

>PLN02913 dihydrofolate synthetase

Probab=100.00  E-value=1.3e-68  Score=547.73  Aligned_cols=344  Identities=70%  Similarity=1.081  Sum_probs=282.1

Q ss_pred             ccccccCCCCCccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHH
Q 017061           32 KSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAF  111 (378)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~  111 (378)
                      ++--|+++.+.|+|++|++||++++.+++.|.|+++|.+.+..++|+||+++|++||+|+.++++||||||||||||++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gL~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~   92 (510)
T PLN02913         13 RNLLFSSSTEEPELGDFLRYLDSLKNYEKSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAF   92 (510)
T ss_pred             HHHhccccccCcCHHHHHHHHHhhccccccCCccccccccccCCCHHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHH
Confidence            34456677789999999999999999988899998887666679999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhc
Q 017061          112 LSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQN  191 (378)
Q Consensus       112 l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~  191 (378)
                      |++||+++||+||+||||||.+|+|||++|+.|.+|++++|.++++++++..+++.......+|+||++|++||++|.+.
T Consensus        93 l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~  172 (510)
T PLN02913         93 LSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQE  172 (510)
T ss_pred             HHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999988999999999999999999888765444557999999999999999999


Q ss_pred             CCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHH
Q 017061          192 HVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDE  271 (378)
Q Consensus       192 ~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~  271 (378)
                      ++|++|+|+|+||++|+||++++..|+++|||||++||+++||+|+|+||++|+|||+++.++|++..+.+++..++.+.
T Consensus       173 ~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~  252 (510)
T PLN02913        173 NVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDK  252 (510)
T ss_pred             CCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999987778999999999999999999999999999999999999999843456777788888


Q ss_pred             HHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcC
Q 017061          272 ASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQG  351 (378)
Q Consensus       272 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~  351 (378)
                      |++.+++++.++..+.......+....+..+...++.+.............+++++|+|.||+.|+++|++++..|...+
T Consensus       253 a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~  332 (510)
T PLN02913        253 ASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQG  332 (510)
T ss_pred             HHHhCCCEEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            99899998876422111000000000000010000000000000000012347899999999999999999999885456


Q ss_pred             CCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          352 GYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       352 ~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ++++.+.|++||+++ .||||++.+
T Consensus       333 ~~i~~~~I~~gL~~~-~~pGR~E~i  356 (510)
T PLN02913        333 WRISDASIRAGLENT-NLLGRSQFL  356 (510)
T ss_pred             CCCCHHHHHHHHHhC-CCCCceEEe
Confidence            789999999999997 799999875

>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]

Probab=100.00  E-value=1e-66  Score=516.24  Aligned_cols=274  Identities=39%  Similarity=0.600  Sum_probs=238.6

Q ss_pred             CCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHH
Q 017061           74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN  153 (378)
Q Consensus        74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~  153 (378)
                      +++|+||.++++.||+|++++++|||+|||||||||+|+++||+++||+||.||||||.+|+|||++|  |.+|+++++.
T Consensus        24 ~~gL~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~in--g~~Isd~~~~  101 (427)
T COG0285          24 DLGLERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRIN--GEPISDEELA  101 (427)
T ss_pred             cCChHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEEC--CEECCHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhc
Q 017061          154 CLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL  233 (378)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~l  233 (378)
                      ++++++++..+..+   ..+||+||++|++||++|.+.++|++|+|||+|||+|+||+++   |.++|||||+.||+++|
T Consensus       102 ~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNVi~---p~vsvIT~I~lDH~~~L  175 (427)
T COG0285         102 AAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNVIE---PDVSVITSIGLDHTAFL  175 (427)
T ss_pred             HHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhccC---CceEEEcccChhHHHHh
Confidence            99998776644322   4789999999999999999999999999999999999999998   57999999999999999


Q ss_pred             CCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061          234 GGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER  313 (378)
Q Consensus       234 G~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (378)
                      |+|+|+||++|+||||++.|+|+...+.|++..++++.|.+.++++..+....        ...+.    ...+.++.  
T Consensus       176 G~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~--------~~~~~----~~~~~~~~--  241 (427)
T COG0285         176 GDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDF--------QVLEE----GNGFSFQG--  241 (427)
T ss_pred             CCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccch--------hhccc----cceEEEec--
Confidence            99999999999999999999999955678899999999999999988753110        00000    00111110  


Q ss_pred             cccccccccccccCCCchh-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061          314 DLKLSIELLDVKLCMIGNH-QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       314 ~~~~~~~~~~i~l~l~G~h-q~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~  377 (378)
                          .....++.+|++|.| |+.||++|++++..+..   .++.+.|++||+++ .||||++.+.
T Consensus       242 ----~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~~---~i~~~~i~~gl~~~-~wpGR~e~l~  298 (427)
T COG0285         242 ----GGGLLDLPLPLLGGHHQIENAALAIAALEALGK---EISEEAIRKGLANV-DWPGRLERLS  298 (427)
T ss_pred             ----CCeeeeeccccccchhHHHHHHHHHHHHHHhcc---cCCHHHHHHHHHhC-cCCceEEEec
Confidence                123456889999988 99999999999999932   48999999999996 8999999875

>PLN02881 tetrahydrofolylpolyglutamate synthase

Probab=100.00  E-value=3e-58  Score=466.15  Aligned_cols=292  Identities=29%  Similarity=0.401  Sum_probs=248.5

Q ss_pred             ccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCC--CCCcEEEEeCCCChHHHHHHHHHHHHHcC
Q 017061           43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPH--SKFKTVHIAGTKGKGSTAAFLSSILRAEG  120 (378)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~--~~~~~I~VTGTnGKtSTt~~l~~iL~~~G  120 (378)
                      .+|+++++||+++..+..+..+      ...+++|+||+++|++||+|+  .++++|||||||||||||+|+++||+++|
T Consensus        14 ~~y~~a~~~L~sl~~~~~~~~~------~~~~~~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G   87 (530)
T PLN02881         14 DSYEEALDALSSLITKKSRADP------SNPGDQFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCG   87 (530)
T ss_pred             cCHHHHHHHHHhcccchhhccc------cccCCChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence            3699999999998765322111      122488999999999999998  78899999999999999999999999999


Q ss_pred             CceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee
Q 017061          121 YSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA  200 (378)
Q Consensus       121 ~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv  200 (378)
                      +|||+||||||.+++|||++|  |.+|+++.|.+++.++...++.........|++||++|++||.+|.+.++|++|+|+
T Consensus        88 ~rvGl~tSPhL~~~rERirin--g~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEv  165 (530)
T PLN02881         88 FRTGLFTSPHLIDVRERFRLD--GVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEV  165 (530)
T ss_pred             CCEEEECCCccCcceeEEEEC--CEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            999999999999999999999  999999999999988777766543223345999999999999999999999999999


Q ss_pred             CCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEE
Q 017061          201 GLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVV  280 (378)
Q Consensus       201 g~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~  280 (378)
                      |+||++|+||++..  |+++|||||+.||+++||+|+|+||++|++||+++.++|+. .++|++.+++++.|++.+++++
T Consensus       166 GlgGr~DaTnvi~~--p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~-~q~~ea~~vl~~~A~e~~a~l~  242 (530)
T PLN02881        166 GLGGRLDATNVVQK--PVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTV-PQPDEAMRVLEERASELGVPLQ  242 (530)
T ss_pred             cCCCCchhhhccCC--CCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEe-CCChHHHHHHHHHHHHhCCcEE
Confidence            99999999998743  78999999999999999999999999999999999999998 5788899999999999999988


Q ss_pred             EecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHh-cC--------
Q 017061          281 SAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRD-QG--------  351 (378)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~-~~--------  351 (378)
                      .+...               +    .+.            ...++++|.|.||..||++|++++..+.. .+        
T Consensus       243 ~v~~~---------------~----~~~------------~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~  291 (530)
T PLN02881        243 VVEPL---------------D----SYG------------LSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALL  291 (530)
T ss_pred             Eeccc---------------c----cce------------ecccCCCCCChhHHHhHHHHHHHHHHHHhhcccccccccc
Confidence            65310               0    000            01367899999999999999999988632 22        


Q ss_pred             -CCCCHHHHHHHHhcCCCCceeEEEec
Q 017061          352 -GYLMLSYFLSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       352 -~gi~~~~I~~gL~~~~~~pgR~~~~~  377 (378)
                       ....++.|++||+++ .||||++.+.
T Consensus       292 ~~~~l~~~i~~GL~~~-~wpGR~e~v~  317 (530)
T PLN02881        292 QAGTLPEQFIKGLSTA-SLQGRAQVVP  317 (530)
T ss_pred             ccCCCHHHHHHHHHhC-CCCceEEEec
Confidence             134456999999996 8999999863

>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase

Probab=100.00  E-value=4.5e-57  Score=451.47  Aligned_cols=274  Identities=39%  Similarity=0.609  Sum_probs=230.3

Q ss_pred             hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (378)
                      |+||+++|++||+|+.++++||||||||||||++||++||+++|++||+|||||+.+|+|||++|  |.+++++++.+++
T Consensus         1 l~r~~~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~--g~~i~~~~~~~~~   78 (397)
T TIGR01499         1 LERMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRIN--GEPISDEELAQAF   78 (397)
T ss_pred             ChHHHHHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEEC--CEECCHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (378)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t  236 (378)
                      +++++..+.+.    .+||+||+.|++||.+|.+.++|++|+|+|++|++|++|+++   |+++|||||++||+++||+|
T Consensus        79 ~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i~---p~vaViTnI~~DHl~~lG~t  151 (397)
T TIGR01499        79 EQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIE---PLVSVITSIGLDHTEILGDT  151 (397)
T ss_pred             HHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCcccccccC---CCeEEEccccHHHHHHhCcc
Confidence            99987765322    379999999999999999999999999999999999999986   68999999999999999999


Q ss_pred             HHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccc
Q 017061          237 LETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLK  316 (378)
Q Consensus       237 le~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (378)
                      +|+|+++|++||+++.++|+| .|+|.+..++.+.+.+.+++++.++. +..     +....+     ..+.+...    
T Consensus       152 ~e~ia~~Ka~I~k~~~~~v~~-~d~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~-----~~~~~~~~----  215 (397)
T TIGR01499       152 LEEIAWEKAGIIKEGVPIVTG-PQEPEALNVLKKKAQEKGAPLFVVGR-DFN-----YSETDE-----NYLSFSGA----  215 (397)
T ss_pred             HHHHHHHHhCccCCCCCEEEc-CCChHHHHHHHHHHHHcCCCEEEecc-cee-----eccccc-----ceEEeecc----
Confidence            999999999999999999999 57888878877777777777776642 110     000000     01111100    


Q ss_pred             ccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061          317 LSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       317 ~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~  377 (378)
                       ......+.++++|.||++|+++|++++..|....+.++.+.|++||+++ .|||||+.++
T Consensus       216 -~~~~~~~~~~l~G~~~~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~-~~pGR~e~i~  274 (397)
T TIGR01499       216 -NLFLEPLALSLLGDHQAENAALALAALEVLGKQRPKLSEEAIRKGLANT-IWPGRLEILS  274 (397)
T ss_pred             -cccccccCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhC-CCCceEEEEe
Confidence             0011346789999999999999999999983222246799999999998 6999998763

A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.

>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]

Probab=100.00  E-value=9.9e-58  Score=446.30  Aligned_cols=297  Identities=37%  Similarity=0.543  Sum_probs=263.2

Q ss_pred             CccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCC--CCCCcEEEEeCCCChHHHHHHHHHHHHHc
Q 017061           42 EPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNP--HSKFKTVHIAGTKGKGSTAAFLSSILRAE  119 (378)
Q Consensus        42 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p--~~~~~~I~VTGTnGKtSTt~~l~~iL~~~  119 (378)
                      .++|+++..||+++........++++..+.+...+|.||+++|+++|+|  +.++.+|||||||||||||+++++||++.
T Consensus        18 ~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SILr~~   97 (496)
T KOG2525|consen   18 SKTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESILRQQ   97 (496)
T ss_pred             chhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCChhhhhheeEEEEecCCCCcchHHHHHHHHHhc
Confidence            4579999999999998877777777777777889999999999999999  88999999999999999999999999999


Q ss_pred             CCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEe
Q 017061          120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE  199 (378)
Q Consensus       120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlE  199 (378)
                      |+|+|+||||||.+.+|||++|  |+|||++.|.++|.++.+.+++....+...|++||++|++||.+|..++||++|+|
T Consensus        98 g~rtG~yTSPHLl~vrErIriN--GqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViE  175 (496)
T KOG2525|consen   98 GLRTGFYTSPHLLSVRERIRIN--GQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIE  175 (496)
T ss_pred             ccccccccChhhcchhheEEEC--CEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEE
Confidence            9999999999999999999999  99999999999999999998888777788899999999999999999999999999


Q ss_pred             eCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeE
Q 017061          200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQV  279 (378)
Q Consensus       200 vg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~  279 (378)
                      ||+||++|+||++.  +|.++.||+|+.||++++|+|+++||++||||||.+.|+++. .++++++.++++.|.+..+++
T Consensus       176 vGlGG~~DaTNvI~--kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~-~q~~e~~nvL~~ra~e~~~~L  252 (496)
T KOG2525|consen  176 VGLGGELDATNVIE--KPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTV-PQPPEALNVLKERASELGVPL  252 (496)
T ss_pred             eccccccccccccc--cceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEc-CCcHHHHHHHHHHHHhcCCCc
Confidence            99999999999995  489999999999999999999999999999999999999998 588999999999999999888


Q ss_pred             EEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCC-------
Q 017061          280 VSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGG-------  352 (378)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~-------  352 (378)
                      .......                               ..+.....+.+.|.||..|+.+|+.++..+..+..       
T Consensus       253 ~~v~p~~-------------------------------~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~  301 (496)
T KOG2525|consen  253 FVVPPLE-------------------------------AYELSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVL  301 (496)
T ss_pred             eecCCch-------------------------------hhhhcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCC
Confidence            7642110                               00122344889999999999999999987753211       


Q ss_pred             -----C--CCHHHHHHHHhcCCCCceeEEEe
Q 017061          353 -----Y--LMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       353 -----g--i~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                           +  +++ .+..||+++ .||||.+.+
T Consensus       302 ~~~~~~~~i~~-~~l~GL~~~-~wPGR~qil  330 (496)
T KOG2525|consen  302 DALQTSGLIPP-AFLSGLAST-DWPGRLQIL  330 (496)
T ss_pred             CccccccCCCH-HHhcchhhc-cCCCceEEE
Confidence                 1  444 455699996 899999875

>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

Probab=100.00  E-value=3.6e-54  Score=432.86  Aligned_cols=281  Identities=29%  Similarity=0.382  Sum_probs=228.5

Q ss_pred             HHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceE
Q 017061           45 LMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVG  124 (378)
Q Consensus        45 ~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg  124 (378)
                      +.++++|++++..+   |+          +++|+||+++|+.||+|+++.++||||||||||||++||+++|+++|++||
T Consensus        13 ~~~~~~~l~~~~~~---~~----------~~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG   79 (416)
T PRK10846         13 LASWLSYLENLHSK---TI----------DLGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVG   79 (416)
T ss_pred             HHHHHHHHHhcccc---CC----------CCChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCce
Confidence            57788888887755   22          378999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCC
Q 017061          125 CYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGG  204 (378)
Q Consensus       125 ~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg  204 (378)
                      +|||||+.+++|||++|  |.+++++++.+.++++.+..      +...||+||+.|++||.+|.+.++|++|+|+|+||
T Consensus        80 ~~tSphl~~~~eri~i~--g~~i~~~~~~~~~~~~~~~~------~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglgg  151 (416)
T PRK10846         80 VYSSPHLVRYTERVRIQ--GQELPESAHTASFAEIEAAR------GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG  151 (416)
T ss_pred             EECCCCCCCcceEEEEC--CEECCHHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            99999999999999999  99999999999888876543      23369999999999999999999999999999999


Q ss_pred             CcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecc
Q 017061          205 ARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYD  284 (378)
Q Consensus       205 ~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~  284 (378)
                      ++|+||+++   |+++|||||++||+++||+|+|+|+++|++||+.+.++|+| .++  ...++.+.+.+.+++++.++.
T Consensus       152 rld~tn~i~---p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~-~~d--~~~~~~~~a~~~~~~~~~~~~  225 (416)
T PRK10846        152 RLDATNIVD---ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVG-EPD--MPSTIADVAQEKGALLQRRGV  225 (416)
T ss_pred             CchhhhccC---CCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEEC-Ccc--HhHHHHHHHHHhCCcEEEecc
Confidence            999999986   58999999999999999999999999999999999999998 333  123455666777788765421


Q ss_pred             cccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 017061          285 AGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFR  364 (378)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~  364 (378)
                      . ..     +... ..     ++.+...       ......++++ .||++|+++|++++..+   +++++.+.|++||+
T Consensus       226 ~-~~-----~~~~-~~-----~~~~~~~-------~~~~~~~~l~-~~~~~N~~~Aia~~~~~---~~~i~~~~i~~~L~  282 (416)
T PRK10846        226 D-WN-----YSVT-DH-----DWAFSDG-------DGTLENLPLP-NVPLPNAATALAALRAS---GLEVSEQAIRDGIA  282 (416)
T ss_pred             e-ee-----eecc-Cc-----eEEEecC-------ccccccCCcc-chHHHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Confidence            1 00     0000 00     1111100       0001235555 47999999999998765   35899999999999


Q ss_pred             cCCCCceeEEEe
Q 017061          365 EEHFWRAEIFLM  376 (378)
Q Consensus       365 ~~~~~pgR~~~~  376 (378)
                      ++ .||||++.+
T Consensus       283 ~~-~~~gR~e~~  293 (416)
T PRK10846        283 SA-ILPGRFQIV  293 (416)
T ss_pred             hC-CCCceEEEE
Confidence            98 599999875

>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional

Probab=100.00  E-value=2.3e-36  Score=307.52  Aligned_cols=228  Identities=20%  Similarity=0.215  Sum_probs=170.4

Q ss_pred             hCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 017061           87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA  166 (378)
Q Consensus        87 lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~  166 (378)
                      +++|+.++++||||||||||||++||+++|+++|+++++++||+..       ++  +.+++.                 
T Consensus        88 ~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~-------i~--~~~~~~-----------------  141 (460)
T PRK00139         88 YGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNG-------IG--GELIPS-----------------  141 (460)
T ss_pred             hcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccc-------cC--Ceeccc-----------------
Confidence            5788888999999999999999999999999999999999998742       34  433321                 


Q ss_pred             HhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhc
Q 017061          167 IRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG  246 (378)
Q Consensus       167 ~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~  246 (378)
                           ...|+|++.++.+|..|.+.++|++|+|+|+++. +. ..+...+|+++|||||++||+++|| |+|+|+++|++
T Consensus       142 -----~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~-~~-~~l~~~~p~iaViTnI~~dHl~~~g-t~e~i~~~K~~  213 (460)
T PRK00139        142 -----GLTTPDALDLQRLLAELVDAGVTYAAMEVSSHAL-DQ-GRVDGLKFDVAVFTNLSRDHLDYHG-TMEDYLAAKAR  213 (460)
T ss_pred             -----CCCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhH-hh-chhcCCcCCEEEEcCCCcccCCcCC-CHHHHHHHHHH
Confidence                 2357788888888999999999999999996542 11 1123346899999999999999998 99999999999


Q ss_pred             cccCCC-eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccccccccc
Q 017061          247 IIKYGR-PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLSIELLDV  324 (378)
Q Consensus       247 Iik~~~-~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i  324 (378)
                      |++... .+|+| .|++....+..    .  +..+.+..             ...++...++.+...+ .+.+.   ..+
T Consensus       214 i~~~~~~~~v~n-~dd~~~~~~~~----~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~---~~~  270 (460)
T PRK00139        214 LFSELGLAAVIN-ADDEVGRRLLA----L--PDAYAVSM-------------AGADLRATDVEYTDSGQTFTLV---TEV  270 (460)
T ss_pred             HHhcCCCeEEEE-cCcHhHHHHHh----h--cEEEEecC-------------CCCcEEEEEEEEecCceEEEEE---EEE
Confidence            998754 78999 57776544322    1  22222210             0111211122111111 11111   157


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          325 KLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       325 ~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      .++++|.||++|+++|++++..+     |++++.|+++|++|.++|||++.+
T Consensus       271 ~l~l~G~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~~~~~~gR~e~~  317 (460)
T PRK00139        271 ESPLIGRFNVSNLLAALAALLAL-----GVPLEDALAALAKLQGVPGRMERV  317 (460)
T ss_pred             EecccchhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence            78999999999999999999999     999999999999998899999875

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=2.8e-34  Score=315.79  Aligned_cols=246  Identities=17%  Similarity=0.173  Sum_probs=170.1

Q ss_pred             hHHHHHHHH-HhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061           77 LGRMNRLMD-RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL  155 (378)
Q Consensus        77 L~r~~~ll~-~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~  155 (378)
                      ++.+..+.+ .+++|+.++++||||||||||||+.||+++|+.+|+++++++|.     ++++  +  +..+..      
T Consensus        94 ~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~-----~~~i--~--~~~i~~------  158 (958)
T PRK11929         94 RKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTL-----GARL--D--GRLIPG------  158 (958)
T ss_pred             HHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCc-----cccC--C--Ceeeec------
Confidence            344555555 68899999999999999999999999999999999999998663     2222  2  221210      


Q ss_pred             HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCC
Q 017061          156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGG  235 (378)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~  235 (378)
                                    +...|..+|+.++  |..|.+.++|++|+|+|+++. +.. .+...+|+++|||||++||+++|| 
T Consensus       159 --------------~~t~~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l-~~~-rl~~~~p~iaviTnI~~dHl~~~g-  219 (958)
T PRK11929        159 --------------SLTTPDAIILHRI--LARMRAAGADAVAMEASSHGL-EQG-RLDGLRIAVAGFTNLTRDHLDYHG-  219 (958)
T ss_pred             --------------CCCCCCHHHHHHH--HHHHHHCCCCEEEEEeccchH-hhC-cccccccCEEEEeCCCccccccCC-
Confidence                          1123444444443  346778999999999986542 211 233346789999999999999998 


Q ss_pred             CHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeec
Q 017061          236 SLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAE  312 (378)
Q Consensus       236 tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (378)
                      |+|+|+++|++||+   +++++|+| .|+|....++...+.  ...+.++...            ...++...++.....
T Consensus       220 t~e~i~~~K~~i~~~~~~~~~~Vln-~dd~~~~~~~~~~~~--~~~~~~~~~~------------~~~d~~~~~~~~~~~  284 (958)
T PRK11929        220 TMQDYEEAKAALFSKLPGLGAAVIN-ADDPAAARLLAALPR--GLKVGYSPQN------------AGADVQARDLRATAH  284 (958)
T ss_pred             CHHHHHHHHHHHhcCCccCCeEEEE-CCCHHHHHHHHHcCC--CceEEEEeeC------------CCccEEEEEEEEcCC
Confidence            99999999999997   67889999 578876555433211  1133333210            001111111111100


Q ss_pred             c-ccccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          313 R-DLKLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       313 ~-~~~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      + .+.+.  .+...+.+|++|.||++|+++|++++..+     |++.+.|+++|++|.++||||+.+
T Consensus       285 ~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-----gi~~~~I~~~L~~~~~~~gR~e~i  346 (958)
T PRK11929        285 GQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKL-----GLPLAQIARALAAVSPVPGRMERV  346 (958)
T ss_pred             ceEEEEEeCCceEEEEecCccHhhHHHHHHHHHHHHHc-----CCCHHHHHHHHhcCCCCCCCcEEe
Confidence            1 11111  12235789999999999999999999999     999999999999998899999876

>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

Probab=100.00  E-value=2.3e-33  Score=282.29  Aligned_cols=217  Identities=25%  Similarity=0.309  Sum_probs=155.9

Q ss_pred             hCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 017061           87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA  166 (378)
Q Consensus        87 lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~  166 (378)
                      +++|  +.++|+||||||||||+.||+++|+..|+   .+.|+.  +++++     +|.|.+                  
T Consensus        69 ~~~~--~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~-----ig~p~~------------------  118 (417)
T TIGR01143        69 RAKF--SGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNE-----IGLPLT------------------  118 (417)
T ss_pred             HhhC--CCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCc-----cchhHH------------------
Confidence            3444  36899999999999999999999999987   344553  33321     243332                  


Q ss_pred             HhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhc
Q 017061          167 IRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG  246 (378)
Q Consensus       167 ~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~  246 (378)
                                         .++.+.++|++|+|+|+++..++..++...+|+++|||||++||+|+|| |+|+|+++|+.
T Consensus       119 -------------------~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~p~vaviTNi~~dHld~~g-s~e~~~~aK~~  178 (417)
T TIGR01143       119 -------------------LLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFG-SLEGIAEAKGE  178 (417)
T ss_pred             -------------------HhcCCCCCeEEEEEeCCCCCCcHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHH
Confidence                               1245678999999999888887766666667899999999999999998 99999999999


Q ss_pred             cccC---CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc--ccccc--c
Q 017061          247 IIKY---GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER--DLKLS--I  319 (378)
Q Consensus       247 Iik~---~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~  319 (378)
                      ||+.   ++.+|+| .|||....+.. .+.  ++++++|+...             .++...++.....+  .+.+.  .
T Consensus       179 l~~~~~~~~~~vln-~Dd~~~~~~~~-~~~--~~~~~~~g~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~  241 (417)
T TIGR01143       179 ILQGLKENGIAVIN-ADDPAFAKFAK-RLP--NKAILSFGFEG-------------GDFSAADISYSALGSTGFTLVAPG  241 (417)
T ss_pred             HHcccCCCCEEEEe-CCcHHHHHHHH-hcc--CCcEEEECCCC-------------CcEEEEEEEEcCCCCEEEEEEeCC
Confidence            9964   6789999 57776543322 211  24566664211             01111111111000  11111  1


Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEE
Q 017061          320 ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL  375 (378)
Q Consensus       320 ~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~  375 (378)
                      +..++.+|++|.||++|+++|++++..+     |++++.|.++|++|.++||||+.
T Consensus       242 ~~~~~~~~l~G~hn~~N~laAia~~~~l-----Gi~~~~i~~~l~~~~~~~gR~e~  292 (417)
T TIGR01143       242 GEFEVSLPLLGRHNVMNALAAAALALEL-----GIPLEEIAEGLAELKLVKGRFEI  292 (417)
T ss_pred             ceEEEEccCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceeE
Confidence            2235788999999999999999999999     99999999999999889999984

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.

>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase

Probab=100.00  E-value=6.5e-33  Score=282.59  Aligned_cols=250  Identities=19%  Similarity=0.196  Sum_probs=171.0

Q ss_pred             hHHHHHHHH-HhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061           77 LGRMNRLMD-RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL  155 (378)
Q Consensus        77 L~r~~~ll~-~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~  155 (378)
                      +.-+.++.+ .+++|+.++++|+||||||||||++||+++|++.|++|++++|++.....    .|.+|.|         
T Consensus        67 ~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~----n~~ig~p---------  133 (464)
T TIGR01085        67 RHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGG----NDLIKNP---------  133 (464)
T ss_pred             HHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECC----eeeecCc---------
Confidence            344555554 45667778899999999999999999999999999999999998742110    1111211         


Q ss_pred             HHHHHHHHHHHHhhcCCCcCHHHHHHHHH-HHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcC
Q 017061          156 FHKIKGVLDEAIRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG  234 (378)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~t~fE~~t~~a-~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG  234 (378)
                                      ..+|.||.+++.+ +..+.+.++|++|+|+|+++ ++...+. ..+|+++|||||++||++++|
T Consensus       134 ----------------~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~-~~~~~l~-~~~p~iaviTnI~~dHl~~~g  195 (464)
T TIGR01085       134 ----------------AALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHA-LAQGRVR-GVRFDAAVFTNLSRDHLDFHG  195 (464)
T ss_pred             ----------------ccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHH-HhhCCcc-CceeCEEEEccCCCCCCcccC
Confidence                            2467888888654 44566789999999999543 3333333 356899999999999999997


Q ss_pred             CCHHHHHHHHhccccC---CCeEEEcCCCChhHHHHHHHHHHhhCCeE-EEecccccchhccccccCCCCCCcccceeEe
Q 017061          235 GSLETIAMAKSGIIKY---GRPLVLGGPFLPHIEHILRDEASLMCSQV-VSAYDAGIRATINGLSMFNDRPCQSCDIIVQ  310 (378)
Q Consensus       235 ~tle~ia~~Ka~Iik~---~~~~V~~~~d~~~~~~vl~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (378)
                       |+|+|+++|++|++.   ++.+|+| .|+|....+..    .....+ +.+.....+        ....++...++.+.
T Consensus       196 -s~e~i~~~K~~i~~~~~~~g~~v~n-~dd~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  261 (464)
T TIGR01085       196 -TMENYFAAKASLFTELGLKRFAVIN-LDDEYGAQFVK----RLPKDITVSAITQPAD--------GRAQDIKITDSGYS  261 (464)
T ss_pred             -CHHHHHHHHHHHhccccCCCeEEEE-cCCHHHHHHHH----hcCCCeEEEEecCCCc--------cccccEEEEEEEEe
Confidence             999999999999974   4578999 57776543322    111222 221111000        00011111111111


Q ss_pred             ecc-ccccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCCCceeEEEe
Q 017061          311 AER-DLKLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGY-LMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       311 ~~~-~~~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~g-i~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ..+ .+.+.  .+...+.+|++|.||++|+++|++++..+     + ++.+.|+++|++|.++|||++.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-----g~i~~e~i~~~L~~~~~~~gR~e~~  326 (464)
T TIGR01085       262 FEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHL-----GGIDLEDIVAALEKFRGVPGRMELV  326 (464)
T ss_pred             cCceEEEEEeCCceEEEEecCccHhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCCCCCCcEEE
Confidence            111 11111  12235789999999999999999999999     8 99999999999998899999875

A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.

>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=5.1e-33  Score=284.25  Aligned_cols=231  Identities=21%  Similarity=0.200  Sum_probs=161.3

Q ss_pred             HHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHH
Q 017061           78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH  157 (378)
Q Consensus        78 ~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~  157 (378)
                      +.+..+.+.+- ...+.++|+||||||||||+.||+++|+..|.+++...+     +     .|.+|.|.+         
T Consensus        93 ~al~~la~~~~-~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~-----~-----n~~iG~p~~---------  152 (479)
T PRK14093         93 AALRDLGRAAR-ARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVAS-----F-----NNHWGVPLS---------  152 (479)
T ss_pred             HHHHHHHHHHH-HhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCcc-----C-----CCccchhHH---------
Confidence            34444443332 235678999999999999999999999999876543222     1     122344331         


Q ss_pred             HHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCH
Q 017061          158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSL  237 (378)
Q Consensus       158 ~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tl  237 (378)
                                                 +. -...++|++|+|+|+++..|...++...+|+++|||||++||+++|| |+
T Consensus       153 ---------------------------l~-~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~g-t~  203 (479)
T PRK14093        153 ---------------------------LA-RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFS-GI  203 (479)
T ss_pred             ---------------------------HH-cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcC-CH
Confidence                                       01 12357899999999888878777777788999999999999999997 99


Q ss_pred             HHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCC-eEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061          238 ETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCS-QVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER  313 (378)
Q Consensus       238 e~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (378)
                      |+|+++|..|++   +++.+|+| .|||....+... +...+. ++++|+...            ..++...++.+...+
T Consensus       204 e~~~~aK~~l~~~~~~~g~~VlN-~Dd~~~~~l~~~-~~~~~~~~vi~~g~~~------------~~~~~~~~~~~~~~~  269 (479)
T PRK14093        204 EAIADAKAEIFTGLEPGGAAVLN-RDNPQFDRLAAS-ARAAGIARIVSFGADE------------KADARLLDVALHADC  269 (479)
T ss_pred             HHHHHHHHHHHccCCCCCEEEEe-CCcHHHHHHHHH-hhhccCCcEEEEeCCC------------CccEEEEEEEEcCCc
Confidence            999999999994   56789999 578876554322 222222 566665211            011111112111111


Q ss_pred             -ccccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          314 -DLKLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       314 -~~~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                       .+.+.  .....+++|++|.||++|+++|++++..+     |++.+.|+++|++|.+.|||++.+
T Consensus       270 ~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~l~~~~~~~gR~~~~  330 (479)
T PRK14093        270 SAVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELA-----GADLALAALALSQVQPAAGRGVRH  330 (479)
T ss_pred             eEEEEEECCceEEEEecCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCcCCcceEE
Confidence             11111  12245889999999999999999999999     999999999999998899997653

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=100.00  E-value=2.3e-32  Score=295.74  Aligned_cols=250  Identities=22%  Similarity=0.230  Sum_probs=172.4

Q ss_pred             HHHHHHHHh--CCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061           79 RMNRLMDRL--GNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (378)
Q Consensus        79 r~~~ll~~l--g~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (378)
                      -...+++.|  +.|+.++|+|+||||||||||++||++||+.+|++||+++|+++       .+|  +..+...+     
T Consensus       462 v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~-------~i~--~~~i~~g~-----  527 (864)
T TIGR02068       462 VARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGV-------YIG--KYLVEKGD-----  527 (864)
T ss_pred             HHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCce-------EEC--CEEEecCC-----
Confidence            456677766  35677899999999999999999999999999999999999764       344  43332100     


Q ss_pred             HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcC-C
Q 017061          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-G  235 (378)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG-~  235 (378)
                                    +..|       ..++.+|.+.++|++|+|+|++|+++.++.+.  +|+++|||||+.||++++| +
T Consensus       528 --------------~t~p-------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~--~pdvaVITNI~~DHL~~~g~~  584 (864)
T TIGR02068       528 --------------NTGP-------ASARRILMDPTVDAAVLETARGGILREGLAFD--RCDVGVVTNIAGDHLGIGDIN  584 (864)
T ss_pred             --------------CCCh-------HHHHHHhhCCCCCEEEEEccCCchhhccCCcc--cccEEEEecCCHHHcCCCCCC
Confidence                          0001       22345678889999999999999988887765  3799999999999999876 7


Q ss_pred             CHHHHHHHHhccc---cCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEeccc-ccchhccccccCCCCCCcc-cceeEe
Q 017061          236 SLETIAMAKSGII---KYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDA-GIRATINGLSMFNDRPCQS-CDIIVQ  310 (378)
Q Consensus       236 tle~ia~~Ka~Ii---k~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~  310 (378)
                      |+|+|+.+|++|+   ++++++|+| .|||.+..    .++...+++++|+.. +.+....... ..+..+.. .+..+.
T Consensus       585 tlE~ia~~K~~i~~~i~~~g~~VlN-aDd~~~~~----~a~~~~~~vi~f~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~  658 (864)
T TIGR02068       585 TIEDLADVKRVVVEVVLPDGYAVLN-ADDPMVAA----MAEKCKGKIAYFSMDPNNPTVAAHIA-DGGRAVYYENGYIVI  658 (864)
T ss_pred             CHHHHHHHHHHHHHhhcCCCEEEEE-CCCHHHHH----HHHhCCCCEEEEecCCCChHHHHHHH-cCCcEEEEcCCEEEE
Confidence            9999999999995   678899999 57886543    333445677777521 1110000000 00000000 000000


Q ss_pred             eccccccc-ccccccccCCCc--hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC----CceeEEEe
Q 017061          311 AERDLKLS-IELLDVKLCMIG--NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF----WRAEIFLM  376 (378)
Q Consensus       311 ~~~~~~~~-~~~~~i~l~l~G--~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~----~pgR~~~~  376 (378)
                      ..+..... ....++++++.|  .||++|+++|+++++.+     +++.+.|++||++|.+    +||||+.+
T Consensus       659 ~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l-----gi~~e~I~~gL~~F~~~~~~~pGR~e~~  726 (864)
T TIGR02068       659 ARGGDEVAIARIAAIPLTMGGRVAFQIENALAAVAAAWAL-----GVPIELIRAGIRTFDADAAQAPGRFNLF  726 (864)
T ss_pred             EecCccccccceeeeccccCCcccchHHHHHHHHHHHHHc-----CCCHHHHHHHHHhccccccCCCCceEEE
Confidence            00000000 011234555555  89999999999999999     9999999999999965    99999875

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.8e-32  Score=278.98  Aligned_cols=209  Identities=21%  Similarity=0.178  Sum_probs=150.0

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||++||+++|+.+|+++.+-              +++|.|++.                       
T Consensus       113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~--------------gnig~~~~~-----------------------  155 (460)
T PRK01390        113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMG--------------GNIGTAVLT-----------------------  155 (460)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEc--------------Cccchhhhh-----------------------
Confidence            5589999999999999999999999999887531              124555431                       


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCC-
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG-  251 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~-  251 (378)
                                    .....+.|++|+|+|+++ +|.++.++   |+++|||||++||+++|| |+|+|+++|++|+++. 
T Consensus       156 --------------~~~~~~~~~~V~E~~~~~-ld~t~~i~---P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~  216 (460)
T PRK01390        156 --------------LEPPPAGRVYVLELSSYQ-IDLAPSLD---PDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQG  216 (460)
T ss_pred             --------------cccCCCCCEEEEEcCccc-cccccccC---CCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCC
Confidence                          112246899999999986 58888775   689999999999999998 8999999999999877 


Q ss_pred             -CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCccc-ceeEeeccccccccccccc--ccC
Q 017061          252 -RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSC-DIIVQAERDLKLSIELLDV--KLC  327 (378)
Q Consensus       252 -~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i--~l~  327 (378)
                       +++|+| .|+|.+..+.. .+...++++++++.....          ..++... ...+......  ......+  .++
T Consensus       217 ~~~~V~n-~dd~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  282 (460)
T PRK01390        217 PDTAVIG-VDDAYCRAIAD-RLEAAGRRVVRISAGKPL----------ADGVYADGGKLVDARGGR--QVEIADLRGIPS  282 (460)
T ss_pred             CCEEEEe-CCCHHHHHHHH-hccccCceEEEEeCCCCC----------cCceEEeCCEEEEecCCC--cceeeeHHhhcc
Confidence             889999 57777655533 332345677776421100          0000000 0000000000  0000112  257


Q ss_pred             CCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          328 MIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       328 l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ++|.||++|+++|++++..|     +++.+.|++||++|..|||||+.+
T Consensus       283 l~G~hn~~Na~aAiaa~~~l-----gi~~~~i~~gL~~~~~~~gR~e~i  326 (460)
T PRK01390        283 LPGAHNAQNAAAAYAAARAL-----GLSPEEIAAGLASFPGLAHRMEQV  326 (460)
T ss_pred             CCchhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            99999999999999999999     999999999999998899999875

>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

Probab=100.00  E-value=1.9e-32  Score=280.24  Aligned_cols=230  Identities=17%  Similarity=0.144  Sum_probs=153.5

Q ss_pred             HhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHH
Q 017061           86 RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE  165 (378)
Q Consensus        86 ~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~  165 (378)
                      .+++|+.++++|+||||||||||+.||+++|+..|+++++.++.... +.+....+.++.|.+                 
T Consensus       102 ~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~-ig~~~~~~~~~~p~~-----------------  163 (481)
T PRK14022        102 FYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTL-DGETFFKSALTTPES-----------------  163 (481)
T ss_pred             HhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeec-cCCeeeeCCCCCchH-----------------
Confidence            46789999999999999999999999999999998766554332110 111111111122211                 


Q ss_pred             HHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhc-CCCHHHHHHHH
Q 017061          166 AIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL-GGSLETIAMAK  244 (378)
Q Consensus       166 ~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~l-G~tle~ia~~K  244 (378)
                              ++.|++..     .+.+.++|++|+|+|+++..  ...++..+|+++|||||++||++++ ++|+|+|+.+|
T Consensus       164 --------~~l~~~~~-----~~~e~g~~~~v~EvsS~~~~--~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK  228 (481)
T PRK14022        164 --------LDLFKMMA-----EAVDNGMTHLIMEVSSQAYL--VGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHK  228 (481)
T ss_pred             --------HHHHHHHH-----HHHHCCCCEEEEEechhHHH--hccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHH
Confidence                    12233221     24578999999999987641  2223344689999999999999994 25999999999


Q ss_pred             hccccCCCeEEEcCCC-ChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCccc-ceeEeeccccccccccc
Q 017061          245 SGIIKYGRPLVLGGPF-LPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSC-DIIVQAERDLKLSIELL  322 (378)
Q Consensus       245 a~Iik~~~~~V~~~~d-~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  322 (378)
                      ++||++++++|+| .| ++. ..... .+  ...++++|+...            ..++... .+.+...+     ....
T Consensus       229 ~~i~~~~~~~Vln-~d~d~~-~~~~~-~~--~~~~~~~~g~~~------------~~~~~~~~~~~~~~~~-----~~~~  286 (481)
T PRK14022        229 RLLMENSKAVVVN-SDMDHF-SELLE-QV--TPQEHDFYGIDS------------ENQIMASNAFSFEATG-----KLAG  286 (481)
T ss_pred             HHHhcCCCEEEEE-cCCCHH-HHHHH-Hh--cCCCEEEEecCC------------ccceEEEEEEEEEEcc-----cCCc
Confidence            9999998999999 45 432 22222 11  123555554210            0011100 11111000     0012


Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          323 DVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       323 ~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      .+.++++|.||++|+++|++++..|     |++.+.|+++|++ ..|||||+.+
T Consensus       287 ~~~l~l~G~hnv~NalaAia~a~~l-----gi~~~~i~~~L~~-~~~~gR~e~i  334 (481)
T PRK14022        287 TYDIQLIGKFNQENAMAAGLACLRL-----GASLEDIQKGIAQ-TPVPGRMEVL  334 (481)
T ss_pred             eEEEEEechhhHHHHHHHHHHHHHc-----CCCHHHHHHHhcc-CCCCCCeEEE
Confidence            3667899999999999999999999     9999999999999 7999999876

>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed

Probab=100.00  E-value=3.1e-32  Score=276.68  Aligned_cols=217  Identities=21%  Similarity=0.250  Sum_probs=152.1

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      ..++|+||||||||||+.||+++|...|..++   ++.  ++|     |.+|.|.+.                       
T Consensus        99 ~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~---t~g--n~n-----~~~G~~~~~-----------------------  145 (453)
T PRK10773         99 PARVVALTGSSGKTSVKEMTAAILRQCGNTLY---TAG--NLN-----NDIGVPLTL-----------------------  145 (453)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHHhcCcccc---cCc--ccc-----CCcccccHH-----------------------
Confidence            46899999999999999999999999987532   332  121     223544421                       


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---  249 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---  249 (378)
                                    .....++|++|+|+|+....+....+...+|+++|||||++||+|+|| |+|+|+++|+.|++   
T Consensus       146 --------------~~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s~e~~~~aK~~l~~~~~  210 (453)
T PRK10773        146 --------------LRLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLP  210 (453)
T ss_pred             --------------hcCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-CHHHHHHHHHHHHcccC
Confidence                          122356899999999865555555566667899999999999999997 89999999999995   


Q ss_pred             CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--cccccccc
Q 017061          250 YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--IELLDVKL  326 (378)
Q Consensus       250 ~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~l  326 (378)
                      +++.+|+| .|||....+.. ..  ....+++|+....          ...++...++.....+ .+.+.  .+..++.+
T Consensus       211 ~~g~~vln-~Dd~~~~~~~~-~~--~~~~~~~~g~~~~----------~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l  276 (453)
T PRK10773        211 ENGIAIMN-ADSNDWLNWQS-VI--GSKTVWRFSPNAA----------NSVDFTATNIHVTSHGTEFTLHTPTGSVDVLL  276 (453)
T ss_pred             CCCEEEEE-CCcHhHHHHHH-Hh--cCCcEEEEeCCCC----------CcCcEEEEEEEEeCCeeEEEEEecCceEEEEe
Confidence            45789999 57776543322 11  1224555542100          0112222222221111 11111  12235889


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |++|.||++|+++|++++..+     |++.+.|+++|++|.++|||++.+
T Consensus       277 ~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~~~~~~gR~e~v  321 (453)
T PRK10773        277 PLPGRHNIANALAAAALAMSV-----GATLDAVKAGLANLKAVPGRLFPI  321 (453)
T ss_pred             cCCcHhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceeEE
Confidence            999999999999999999999     999999999999998899999875

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.8e-32  Score=270.57  Aligned_cols=206  Identities=22%  Similarity=0.213  Sum_probs=150.4

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      ..|+|+|||||||||||+||+++|+++|+++.+             ..| ||.|..+-                      
T Consensus       109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l-------------gGN-IG~p~l~~----------------------  152 (448)
T COG0771         109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALL-------------GGN-IGTPALEL----------------------  152 (448)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHHhcCCCcee-------------ccc-cCccHHHh----------------------
Confidence            557999999999999999999999999999876             233 77777531                      


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~  252 (378)
                                    .-.....|++|+|+++.+. +.+.-+   +|+++|||||++||+|||| |+|+|+..|..|+....
T Consensus       153 --------------~~~~~~~d~~VlElSSfQL-~~~~~~---~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~  213 (448)
T COG0771         153 --------------LEQAEPADVYVLELSSFQL-ETTSSL---RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQT  213 (448)
T ss_pred             --------------hcccCCCCEEEEEcccccc-ccCccC---CccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCc
Confidence                          0113578999999999985 444434   4789999999999999997 99999999999998777


Q ss_pred             -eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCch
Q 017061          253 -PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGN  331 (378)
Q Consensus       253 -~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~  331 (378)
                       .+|+| .||+++..+..+.   ..+.+.+++......  .+....++.      +      .+....-...-.++++|.
T Consensus       214 ~~~Vin-~dd~~~~~~~~~~---~~~~~~~fs~~~~~~--~~~~~~~~~------~------~~~~~~i~~~~~l~l~G~  275 (448)
T COG0771         214 EVAVIN-ADDAYLKTLADEA---TKARVIWFSFGEPLA--DGDYIYDGK------L------VFKGEKLLPADELKLPGA  275 (448)
T ss_pred             cEEEEe-CCcHHHhhhhhhc---ccceeEEEEcccccc--ccceeecch------h------ccccccccchhhcCCcch
Confidence             89999 6788654433322   334555554211100  000000000      0      000000011236899999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          332 HQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       332 hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ||+.|+++|+++|+.+     |++.+.|.++|.+|...|+|++.+
T Consensus       276 hn~~N~lAa~a~a~~~-----gv~~e~i~~~L~~F~gl~HR~e~v  315 (448)
T COG0771         276 HNLENALAALALARAL-----GVPPEAILEALSSFTGLPHRLEFV  315 (448)
T ss_pred             hhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence            9999999999999999     999999999999999999999875

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.2e-32  Score=278.61  Aligned_cols=224  Identities=21%  Similarity=0.213  Sum_probs=154.2

Q ss_pred             HhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHH
Q 017061           86 RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE  165 (378)
Q Consensus        86 ~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~  165 (378)
                      .+-.|..+.++|+||||||||||++||+++|+..|.++++.              +++|.|+..                
T Consensus       114 ~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~--------------Gnig~~~~~----------------  163 (480)
T PRK01438        114 RLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV--------------GNIGTPVLD----------------  163 (480)
T ss_pred             HhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE--------------CCccHHHHH----------------
Confidence            33334456789999999999999999999999999987652              113554431                


Q ss_pred             HHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHh
Q 017061          166 AIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKS  245 (378)
Q Consensus       166 ~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka  245 (378)
                                          .+....+.|++|+|+|+++. +..+++   +|+++|||||++||+++|| |+|+|+.+|+
T Consensus       164 --------------------~~~~~~~~~~~V~E~ss~~l-~~~~~i---~P~iaVITNI~~DHld~lg-t~e~ia~~K~  218 (480)
T PRK01438        164 --------------------AVRDPEGYDVLAVELSSFQL-HWSPSV---SPHSAAVLNLAPDHLDWHG-SMEAYAAAKA  218 (480)
T ss_pred             --------------------HHhcCCCCCEEEEEcChHHh-CcCccc---CCCEEEEecCChhhccccC-CHHHHHHHHH
Confidence                                01234568999999999875 344444   4799999999999999998 9999999999


Q ss_pred             ccccCC-CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccccccccc-c
Q 017061          246 GIIKYG-RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELL-D  323 (378)
Q Consensus       246 ~Iik~~-~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  323 (378)
                      +|+++. ..+|+| .|+|.+..++.+.+...++++++++......  ..+.....  . ..+..+.... ........ .
T Consensus       219 ~I~~~~~~~~v~n-~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~-~~~~~~~~~~-~~~~~~~~~~  291 (480)
T PRK01438        219 RIYEGTTVACVYN-VADPATEDLVEEADVVEGARAIGFTLGTPGP--SQLGVVDG--I-LVDRAFVEDR-QTSALELATL  291 (480)
T ss_pred             HHHhCCCceEEEe-CCcHHHHHHHhhhcccCCceEEEEeCCCCCC--CCceEECC--E-EEEEeecccc-ccccceeeeH
Confidence            999875 567888 5788877766655544567777664210000  00000000  0 0000000000 00000000 1


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          324 VKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       324 i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      .+++++|.||++|+++|++++..+     +++.+.|+++|++|.++|||++.+
T Consensus       292 ~~l~l~G~hn~~Na~aAia~~~~l-----gi~~~~i~~~L~~~~~~~gR~E~i  339 (480)
T PRK01438        292 EDLRPAAPHNIANALAAAALARSF-----GVPPAAVRDGLRAFRPDAHRIEHV  339 (480)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            358999999999999999999988     999999999999997788999865

>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=99.98  E-value=1.1e-31  Score=269.48  Aligned_cols=213  Identities=27%  Similarity=0.330  Sum_probs=166.5

Q ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 017061           92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN  171 (378)
Q Consensus        92 ~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~  171 (378)
                      .+.++|+||||+|||||+.|+++||+..| +|  +.||+.  |     +|++|.|.+                       
T Consensus       101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~-~v--~~t~gn--~-----Nn~iGlPlt-----------------------  147 (451)
T COG0770         101 FNAKVIAITGSNGKTTTKEMLAAILSTKG-KV--HATPGN--F-----NNEIGLPLT-----------------------  147 (451)
T ss_pred             cCCcEEEEeCCCCcHHHHHHHHHHHhhcC-eE--ecCCCc--c-----CccccchhH-----------------------
Confidence            46789999999999999999999999975 44  677763  3     355788876                       


Q ss_pred             CCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc--
Q 017061          172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK--  249 (378)
Q Consensus       172 ~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik--  249 (378)
                                    .+....+.|++|+|+|+.+..|...+....+|+++|||||+.+|++++| |.|.|+++|+.|+.  
T Consensus       148 --------------ll~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg-s~e~Ia~aK~Ei~~~~  212 (451)
T COG0770         148 --------------LLRLPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGL  212 (451)
T ss_pred             --------------HHhCCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC-CHHHHHHHHHHHHhcc
Confidence                          2345567999999999999999998888889999999999999999998 79999999999995  


Q ss_pred             -CCCeEEEcCCCChhHHHHHHHHHHhh-CCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--cccccc
Q 017061          250 -YGRPLVLGGPFLPHIEHILRDEASLM-CSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--IELLDV  324 (378)
Q Consensus       250 -~~~~~V~~~~d~~~~~~vl~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i  324 (378)
                       +++.+|+| .|++.    +...+.+. ..++++|+..            .+.++...++.....+ .+.+.  .....+
T Consensus       213 ~~~g~ai~n-~d~~~----~~~~~~~~~~~~v~~fg~~------------~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~  275 (451)
T COG0770         213 RPEGIAILN-ADNPL----LKNWAAKIGNAKVLSFGLN------------NGGDFRATNIHLDEEGSSFTLDIEGGEAEF  275 (451)
T ss_pred             CCCcEEEEE-CccHH----HHHHHhhcCCCcEEEEcCC------------CCCceeeEEEEEcCCceEEEEEecCceEEE
Confidence             56779999 56675    23333322 4678887632            1223334444433332 12221  223369


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEE
Q 017061          325 KLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIF  374 (378)
Q Consensus       325 ~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~  374 (378)
                      .+|++|+||+.|+++|+++|+.+     |++.+.|+++|+.+.+.+||++
T Consensus       276 ~l~~~G~hn~~NalaA~a~a~~l-----G~~~e~i~~~L~~~~~~~gR~~  320 (451)
T COG0770         276 ELPLPGRHNVTNALAAAALALEL-----GLDLEEIAAGLKELKPVKGRLE  320 (451)
T ss_pred             EecCCcHhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCCccce
Confidence            99999999999999999999999     9999999999999999999998

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.98  E-value=1.5e-31  Score=271.43  Aligned_cols=205  Identities=16%  Similarity=0.122  Sum_probs=146.4

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||++||+.+|+++.+-             .| +|.|..                         
T Consensus       108 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~g-------------gn-ig~p~~-------------------------  148 (448)
T PRK03803        108 APVIAITGSNGKSTVTTLVGEMAKAAGKRVAVG-------------GN-IGTPAL-------------------------  148 (448)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEe-------------cC-cCHHHH-------------------------
Confidence            479999999999999999999999999876541             11 343321                         


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCe
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP  253 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~  253 (378)
                                   .....+.|++|+|+|+.+. |.++.++   |+++|||||++||+|+|| |+|+|+++|++|+++.+.
T Consensus       149 -------------~~~~~~~~~~V~E~ss~~l-~~~~~~~---P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~  210 (448)
T PRK03803        149 -------------DLLSDDPELYVLELSSFQL-ETTHSLN---AEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQ  210 (448)
T ss_pred             -------------HHhcCCCCEEEEEcChhhh-CcCcccC---ccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCe
Confidence                         0112357999999999864 6677665   689999999999999998 899999999999998888


Q ss_pred             EEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhH
Q 017061          254 LVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQ  333 (378)
Q Consensus       254 ~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq  333 (378)
                      +|+| .|++.+..+.    . ...++++|+......  ..+..... +.  ..+.+.  +.   ......+.++++|.||
T Consensus       211 ~V~n-~dd~~~~~~~----~-~~~~~~~~g~~~~~~--~~~~~~~~-~~--~~~~~~--~~---~~~~~~~~l~l~G~Hn  274 (448)
T PRK03803        211 VVFN-RDDALTRPLV----P-DNQPCLSFGLNAPDF--DEWGLREG-DG--ETYLAH--GF---ERLMPVRELKLRGSHN  274 (448)
T ss_pred             EEEe-CCCHHHHHHh----h-cCCcEEEEeCCCCCc--CceEEEec-CC--eEEEEe--CC---ceEEehhccCCCCHHH
Confidence            9999 5777654432    1 234666664211000  00000000 00  000000  00   0001136789999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          334 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       334 ~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ++|+++|++++..+     |++++.|+++|++|..+|+||+.+
T Consensus       275 ~~NalaAia~a~~l-----gi~~~~i~~~L~~f~g~~~R~e~v  312 (448)
T PRK03803        275 LANALAALALGEAA-----GLPKEAMLEVLRTFTGLPHRCEWV  312 (448)
T ss_pred             HHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCceEEE
Confidence            99999999999999     999999999999998899999875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.98  E-value=4.7e-31  Score=271.18  Aligned_cols=235  Identities=23%  Similarity=0.200  Sum_probs=157.8

Q ss_pred             ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061           76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL  155 (378)
Q Consensus        76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~  155 (378)
                      ..+.+.++++.+++|..+.++|+||||||||||++||++||+.+|+++++.                 | ++.+..+...
T Consensus       103 ~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~-----------------G-ni~~~~~~~~  164 (498)
T PRK02006        103 EIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVA-----------------G-NISPAALDKL  164 (498)
T ss_pred             HHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEE-----------------C-CCCHHHHHHH
Confidence            466677778888887666689999999999999999999999999998751                 1 2222211110


Q ss_pred             HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhc--CCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhc
Q 017061          156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQN--HVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL  233 (378)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~--~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~l  233 (378)
                      .                              -....  ..|++|+|+++.+. +..+.+   +|+++|||||++||+|+|
T Consensus       165 ~------------------------------~~~~~~~~~~~~V~E~ss~~l-~~~~~~---~p~iaviTNI~~DHld~~  210 (498)
T PRK02006        165 M------------------------------EAIDAGALPDVWVLELSSFQL-ETTHTL---APDAATVLNITQDHLDWH  210 (498)
T ss_pred             H------------------------------HhhccCCCCcEEEEEccHHHh-Cccccc---CCCEEEEcCCChhhhccc
Confidence            0                              01112  24899999998764 344444   479999999999999999


Q ss_pred             CCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061          234 GGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER  313 (378)
Q Consensus       234 G~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (378)
                      | |+|+|+.+|++|+++++.+|+| .|||.+..+....   ...++++|+....... ..+........   .+.+....
T Consensus       211 g-s~e~y~~aK~~i~~~~~~~Vln-~dd~~~~~~~~~~---~~~~~~~~g~~~~~~~-~~~~~~~~~~~---~~~~~~~~  281 (498)
T PRK02006        211 G-SMAAYAAAKARIFGPRTVRVLN-RDDARVMAMAPPG---GAADAVTFGLDEPAAD-GDYGLLRDNGM---AWLVEAED  281 (498)
T ss_pred             C-CHHHHHHHHHHHcCCCCEEEEe-CCCHHHHHHhhcc---CCccEEEEeCCCcccc-ccceEEecCCe---EEEEecCc
Confidence            7 8999999999999988899999 5788765443221   1235566642110000 00000000000   00000000


Q ss_pred             -ccccc-------c-----------ccc-ccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeE
Q 017061          314 -DLKLS-------I-----------ELL-DVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEI  373 (378)
Q Consensus       314 -~~~~~-------~-----------~~~-~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~  373 (378)
                       .+.+.       .           ... .++++++|.||++|+++|++++..+     |++.+.|+++|++|..+||||
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l-----gi~~~~i~~aL~~f~~~~gR~  356 (498)
T PRK02006        282 RDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI-----GLPAAPLLHGLREYRGEPHRV  356 (498)
T ss_pred             ccccccccccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCce
Confidence             00000       0           001 2568999999999999999999999     999999999999998899999


Q ss_pred             EEe
Q 017061          374 FLM  376 (378)
Q Consensus       374 ~~~  376 (378)
                      +.+
T Consensus       357 e~~  359 (498)
T PRK02006        357 ELV  359 (498)
T ss_pred             EEE
Confidence            875

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=2.4e-31  Score=269.70  Aligned_cols=206  Identities=15%  Similarity=0.099  Sum_probs=148.0

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||++||+++|+.+|.++.+              .+++|.|++...                     
T Consensus       109 ~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~--------------~GniG~~~~~~~---------------------  153 (445)
T PRK04308        109 GDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVI--------------AGNIGTPVLEAE---------------------  153 (445)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEE--------------eCCccHHHHHHH---------------------
Confidence            347999999999999999999999999987643              222566553210                     


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~  252 (378)
                                   ..-...++|++|+|+|+++ +|.++.++   |+++|||||++||+++|| |+|+|+.+|++|+++++
T Consensus       154 -------------~~~~~~~~d~~VlE~~~~~-l~~~~~~~---p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~  215 (445)
T PRK04308        154 -------------LQREGKKADVWVLELSSFQ-LENTESLR---PTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDG  215 (445)
T ss_pred             -------------HhhcCCCCcEEEEEeChHH-hCcCcccC---CCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCC
Confidence                         0001246899999999764 46666654   789999999999999997 99999999999999988


Q ss_pred             eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchh
Q 017061          253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNH  332 (378)
Q Consensus       253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~h  332 (378)
                      .+|+| .|+|.....    . +.++++++|+.... .   .+.......    .+.+.  +.    .....+++|++|.|
T Consensus       216 ~~i~n-~dd~~~~~~----~-~~~~~v~~~~~~~~-~---d~~~~~~~~----~~~~~--~~----~~~~~~~l~l~G~h  275 (445)
T PRK04308        216 VQVLN-ADDAFCRAM----K-RAGREVKWFSLEHE-A---DFWLERETG----RLKQG--NE----DLIATQDIPLQGLH  275 (445)
T ss_pred             EEEEe-CCcHHHHHH----h-hcCCcEEEecCCCC-C---ceeEeccCC----EEEEc--Cc----eeeehhccCCcChh
Confidence            99999 577754332    2 23467777652110 0   000000000    01110  00    00123578999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          333 QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       333 q~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |++|+++|++++..+     |++.+.|+++|++|.+||+||+.+
T Consensus       276 n~~NalaAia~a~~l-----gi~~~~i~~~L~~f~~~~~R~e~~  314 (445)
T PRK04308        276 NAANVMAAVALCEAV-----GLPREALLEHVKTFQGLPHRVEKI  314 (445)
T ss_pred             hHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCceEEE
Confidence            999999999999999     999999999999998899999865

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=3.1e-31  Score=268.34  Aligned_cols=204  Identities=18%  Similarity=0.124  Sum_probs=147.1

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||++||++||+.+|++++.-             .| +|.|..                        
T Consensus       104 ~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~-------------gn-ig~p~~------------------------  145 (438)
T PRK03806        104 QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVG-------------GN-IGLPAL------------------------  145 (438)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEe-------------CC-cchhHH------------------------
Confidence            3479999999999999999999999999987641             11 243320                        


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~  252 (378)
                                    .....+.|++|+|+|+++. +.++.++   |+++|||||++||+|+||+|+|+|+++|++|++..+
T Consensus       146 --------------~~~~~~~~~~V~E~ss~~l-~~~~~~~---p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~  207 (438)
T PRK03806        146 --------------SLLDQECELYVLELSSFQL-ETTSSLK---AAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK  207 (438)
T ss_pred             --------------HhhccCCCEEEEEccchhh-ccCcccC---CCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCC
Confidence                          1234567999999999874 5666654   789999999999999997799999999999999888


Q ss_pred             eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchh
Q 017061          253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNH  332 (378)
Q Consensus       253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~h  332 (378)
                      .+|+| .|+|.+..+.     +...++++++.....     +.......   ..+.+.. +    ......++++++|.|
T Consensus       208 ~~v~n-~dd~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~-~----~~~~~~~~l~l~G~h  268 (438)
T PRK03806        208 VCVVN-ADDALTMPIR-----GADKRCVSFGVNMGD-----YHLNRQQG---ETWLRVK-G----EKVLNTKEMKLSGQH  268 (438)
T ss_pred             eEEEe-CCCHHHHHHh-----cCCceEEEEecCCCc-----eEEEecCC---eEEEEec-C----ceeeehhhcCCcccc
Confidence            99999 5777654421     123455555421100     00000000   0000000 0    000124678999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          333 QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       333 q~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |++|+++|++++..+     +++.+.|+++|++|.+|||||+.+
T Consensus       269 n~~Na~aAia~a~~l-----gi~~~~i~~~L~~f~~~~gR~E~v  307 (438)
T PRK03806        269 NYTNALAALALADAV-----GIPRASSLKALTTFTGLPHRFQLV  307 (438)
T ss_pred             cHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCeEEEE
Confidence            999999999999999     999999999999998999999865

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=3.8e-31  Score=269.15  Aligned_cols=211  Identities=20%  Similarity=0.131  Sum_probs=147.4

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||++||+++|+.+|+++..             ..| +|.|++....                    
T Consensus       108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~-------------~gn-iG~~~~~~~~--------------------  153 (459)
T PRK02705        108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAPA-------------CGN-IGYAACELAL--------------------  153 (459)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEE-------------ecc-cChhHHHHHh--------------------
Confidence            457999999999999999999999999987654             112 4665542100                    


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~  252 (378)
                                  +......+.|++|+|+|++ .+|.++.+   +|+++|||||++||+++|| |+|+|+.+|++|+++++
T Consensus       154 ------------~~~~~~~~~d~~VlE~~s~-~l~~~~~~---~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~  216 (459)
T PRK02705        154 ------------LRSGKAQKPDWIVAELSSY-QIESSPEL---APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSE  216 (459)
T ss_pred             ------------hhhccCCCCCEEEEEcccc-ccccCccc---CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCC
Confidence                        0011245789999999986 46666664   4799999999999999998 99999999999999989


Q ss_pred             eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccccccc-ccccCCCc
Q 017061          253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLSIELL-DVKLCMIG  330 (378)
Q Consensus       253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~i~l~l~G  330 (378)
                      ++|+| .|+|.+..+.    .+.. ..++++.....           .++...+..+...+ .+....... .+.++++|
T Consensus       217 ~~Vln-~dd~~~~~~~----~~~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G  279 (459)
T PRK02705        217 IRILN-GDDPYLRQHR----SSWP-KGYWTSTQGKA-----------SLLGQADGWILEEGWVVERGEPLFPLSALKMPG  279 (459)
T ss_pred             EEEEE-CCCHHHHHHH----hcCC-ceEEeccCCcc-----------ccccccceeEecCCEEEECCcceeeHHHcCCcc
Confidence            99999 5777654442    2222 22444311000           00000000000000 000000011 24689999


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          331 NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       331 ~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      .||++|+++|++++..+     +++.+.|.++|++|..|||||+.+
T Consensus       280 ~hn~~NalaAia~a~~l-----gv~~~~i~~~L~~f~~~~gR~e~~  320 (459)
T PRK02705        280 AHNLQNLLLAVAAARLA-----GLSAEAIAEALRSFPGVPHRLERI  320 (459)
T ss_pred             HHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            99999999999999999     999999999999998999999864

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=99.97  E-value=7.3e-31  Score=265.21  Aligned_cols=200  Identities=24%  Similarity=0.237  Sum_probs=145.7

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||++||+++|+.+|+++.+-             .| +|.|...                       
T Consensus       101 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~-------------gn-ig~~~~~-----------------------  143 (433)
T TIGR01087       101 PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLG-------------GN-IGTPALE-----------------------  143 (433)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEE-------------Cc-cCHHHHH-----------------------
Confidence            3579999999999999999999999999886431             11 3433210                       


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC--
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~--  250 (378)
                                    .+...+.|++|+|+|+++ ++.++.+   +|+++|||||++||+|+|| |+|+|+.+|++|++.  
T Consensus       144 --------------~~~~~~~~~~V~E~~~~~-l~~~~~~---~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~  204 (433)
T TIGR01087       144 --------------VLDQEGAELYVLELSSFQ-LETTESL---RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQT  204 (433)
T ss_pred             --------------HHhccCCCEEEEEcChhH-hcCCccc---CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCC
Confidence                          111157899999999775 3555555   4789999999999999998 899999999999974  


Q ss_pred             -CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCC
Q 017061          251 -GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI  329 (378)
Q Consensus       251 -~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~  329 (378)
                       ++.+|+| .|++..    ...+...++++++|+...            ..+.   .+.... +...+  ...+++++++
T Consensus       205 ~~~~~i~n-~dd~~~----~~~~~~~~~~~~~~g~~~------------~~~~---~~~~~~-~~~~~--~~~~~~l~l~  261 (433)
T TIGR01087       205 EGDVAVLN-ADDPRF----ARLAQKSKAQVIWFSVEK------------DAER---GLCIRD-GGLYL--KPNDLEGSLL  261 (433)
T ss_pred             CCCEEEEE-CCCHHH----HHhhhhcCceEEEEeCCc------------cCCC---ceEEEC-CEEEE--eccccccCCC
Confidence             4588999 466643    333444466787775211            0000   011110 00001  0113778999


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          330 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       330 G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |.||++|+++|++++..|     |++.+.|+++|++|..+|+||+.+
T Consensus       262 G~hn~~Na~aAia~a~~l-----gi~~~~i~~~L~~f~g~~~R~e~v  303 (433)
T TIGR01087       262 GLHNAENILAAIALAKSL-----GLNLEAILEALRSFKGLPHRLEYV  303 (433)
T ss_pred             cHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            999999999999999999     999999999999998899999865

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=1.2e-30  Score=264.79  Aligned_cols=209  Identities=19%  Similarity=0.158  Sum_probs=145.9

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||++||++||+.+|+++.+             . +++|.|...                       
T Consensus       103 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~-------------~-GniG~p~l~-----------------------  145 (454)
T PRK01368        103 NLKFIAITGTNGKSTTTALISHILNSNGLDYPV-------------A-GNIGVPALQ-----------------------  145 (454)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEE-------------E-ccCCHHHhc-----------------------
Confidence            457999999999999999999999999988654             1 224554321                       


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC--
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~--  250 (378)
                                      ...+.|++|+|+|+++. +..   ...+|+++|||||++||+|+|| |+|+|+.+|..|++.  
T Consensus       146 ----------------~~~~~~~~VlE~ss~ql-~~~---~~~~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~  204 (454)
T PRK01368        146 ----------------AKASKDGYVLELSSFQL-DLV---KTFTAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMD  204 (454)
T ss_pred             ----------------ccCCCCEEEEEcCchhh-ccc---cccCCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCC
Confidence                            12346999999999985 222   3345899999999999999997 999999999999953  


Q ss_pred             -CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCC
Q 017061          251 -GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI  329 (378)
Q Consensus       251 -~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~  329 (378)
                       ++.+|+| .||+....+.........+++++|+.....  ..++....      ..+.+.....  . .....+.++++
T Consensus       205 ~~~~~Vln-~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~--~~~~~~~~------~~~~~~~~~~--~-~~~~~~~~~l~  272 (454)
T PRK01368        205 KDSYAVIN-IDNDYCREIFIKLQQEQRIKLIPFSVTKIL--ENGISVVD------DKISDNFFDD--I-SFKLPFNKNLQ  272 (454)
T ss_pred             CCCEEEEe-CCcHHHHHHHHHhhcccCceEEEEeCCccc--CCCcEEEC------CEEEEEecCC--c-ceEEEecCCCC
Confidence             5678999 577866544332211123466666521100  00000000      0000000000  0 01234667899


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          330 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       330 G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |.||++|+++|++++..+     +++.+.|.++|++|.+|||||+.+
T Consensus       273 G~hn~~Na~aAia~~~~l-----gi~~~~i~~~L~~F~~~~~Rle~v  314 (454)
T PRK01368        273 GKHNCENIAASYAVAKII-----GVEPKKILESISSFQSLPHRMQYI  314 (454)
T ss_pred             chhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence            999999999999999999     999999999999999999999875

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

Probab=99.97  E-value=9.7e-31  Score=283.27  Aligned_cols=231  Identities=13%  Similarity=0.169  Sum_probs=160.4

Q ss_pred             HHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHH
Q 017061           78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH  157 (378)
Q Consensus        78 ~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~  157 (378)
                      +.+..+.+.+ .++.+.++|+||||||||||+.||+++|+..|..++   ++.  +++     +++|.|.+         
T Consensus        92 ~al~~la~~~-~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~---~~~--~~n-----~~ig~p~~---------  151 (822)
T PRK11930         92 KALQELAAYH-RSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPR--SYN-----SQIGVPLS---------  151 (822)
T ss_pred             HHHHHHHHHH-HHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEec---CCc--ccC-----cchhHHHH---------
Confidence            3344444333 256778999999999999999999999998775443   221  111     22344432         


Q ss_pred             HHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCH
Q 017061          158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSL  237 (378)
Q Consensus       158 ~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tl  237 (378)
                                                  .+....++|++|+|+|+++..+...+....+|+++|||||++||+|+|| |+
T Consensus       152 ----------------------------~~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g-t~  202 (822)
T PRK11930        152 ----------------------------VWQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR-SI  202 (822)
T ss_pred             ----------------------------HhcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC-CH
Confidence                                        1123467899999999888777665544456899999999999999997 99


Q ss_pred             HHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccc
Q 017061          238 ETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLK  316 (378)
Q Consensus       238 e~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  316 (378)
                      |+|+++|+.||+..+.+|+| .|++....++....  ...++++|+...           ...++...++.....+ .+.
T Consensus       203 e~y~~aK~~i~~~~~~~vin-~Dd~~~~~~~~~~~--~~~~~~~~g~~~-----------~~~d~~~~~i~~~~~~~~~~  268 (822)
T PRK11930        203 KQKIMEKLKLFKDCDVIIYN-GDNELISSCITKSN--LTLKLISWSRKD-----------PEAPLYIPFVEKKEDHTVIS  268 (822)
T ss_pred             HHHHHHHHHHhcCCCEEEEe-CCCHHHHHHHHhhh--cCCcEEEEcCCC-----------CCCcEEEEEEEEcCCceEEE
Confidence            99999999999887888999 57776654433221  123455554210           0011211122111111 111


Q ss_pred             cc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          317 LS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       317 ~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      +.  .....+.+|++|.||++|+++|++++..+     |++.+.|.++|++|.++||||+.+
T Consensus       269 ~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~f~~~~gR~e~~  325 (822)
T PRK11930        269 YTYKGEDFHFEIPFIDDASIENLIHCIAVLLYL-----GYSADQIQERMARLEPVAMRLEVK  325 (822)
T ss_pred             EEeCCceEEEEecCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCeeEEE
Confidence            11  12245889999999999999999999999     999999999999998899999875

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=4.8e-30  Score=260.18  Aligned_cols=205  Identities=20%  Similarity=0.151  Sum_probs=144.7

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||++||+++|+.+|+++.+.             .| +|.|.+..                      
T Consensus       107 ~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~-------------Gn-ig~p~~~~----------------------  150 (447)
T PRK02472        107 EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLA-------------GN-IGYPASEV----------------------  150 (447)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEE-------------cc-cChhhHHH----------------------
Confidence            3579999999999999999999999999876431             12 46555320                      


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCC-
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG-  251 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~-  251 (378)
                                    .-...+.|++|+|+++.+.. ...   ..+|+++|||||++||+++|| |+|+|+.+|++|+++. 
T Consensus       151 --------------~~~~~~~~~~V~E~ss~~~~-~~~---~~~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~  211 (447)
T PRK02472        151 --------------AQKATADDTLVMELSSFQLM-GIE---TFRPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQT  211 (447)
T ss_pred             --------------HhcCCCCCEEEEEcCchhhC-ccc---ccCCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCC
Confidence                          01124579999999988743 233   335799999999999999998 9999999999999754 


Q ss_pred             --CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCC
Q 017061          252 --RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI  329 (378)
Q Consensus       252 --~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~  329 (378)
                        +.+|+| .|+|.+.    ..+++..+++++++.... .. .......+      .+.+.  +.    .....++++++
T Consensus       212 ~~~~~v~n-~dd~~~~----~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~------~~~~~--~~----~~~~~~~l~l~  272 (447)
T PRK02472        212 EDDYLVIN-FDQEEVK----ELAKQTKATVVPFSTTEK-VE-DGAYIKDG------ALYFK--GE----KIMAADDIVLP  272 (447)
T ss_pred             CCCEEEEe-CCcHHHH----HHHhhcCceEEEeecCCC-Cc-CceEEECC------EEEEC--Cc----eEEehhhcCCC
Confidence              458998 5677553    333344556776642110 00 00000000      01110  00    00112468999


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          330 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       330 G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |.||++|+++|++++..|     |++.+.|+++|++|.+||+||+.+
T Consensus       273 G~hn~~Na~aAia~~~~l-----gi~~~~i~~~L~~f~~~~~R~e~~  314 (447)
T PRK02472        273 GSHNLENALAAIAAAKLL-----GVSNEAIREVLSTFSGVKHRLQYV  314 (447)
T ss_pred             CHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCcceEE
Confidence            999999999999999999     999999999999998899999865

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=5.3e-30  Score=262.48  Aligned_cols=204  Identities=18%  Similarity=0.131  Sum_probs=141.1

Q ss_pred             cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (378)
Q Consensus        95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (378)
                      ++|+||||||||||++||+++|+.+|+++.+.              +++|.|+..                         
T Consensus       118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~--------------GniG~p~~~-------------------------  158 (488)
T PRK03369        118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLC--------------GNIGSPVLD-------------------------  158 (488)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHHHcCCceEEe--------------CCCchHHHH-------------------------
Confidence            69999999999999999999999999876542              225666521                         


Q ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeE
Q 017061          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPL  254 (378)
Q Consensus       175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~  254 (378)
                                   ....+.|++|+|+|+.+. +.   +...+|+++|||||++||+|+|| |+|+|+.+|++||+. +++
T Consensus       159 -------------~~~~~~~~~VlE~ss~ql-~~---~~~~~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~  219 (488)
T PRK03369        159 -------------VLDEPAELLAVELSSFQL-HW---APSLRPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVA  219 (488)
T ss_pred             -------------hccCCCCEEEEECChHHh-Cc---ccccCCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEE
Confidence                         113578999999998864 22   33446899999999999999998 999999999999984 788


Q ss_pred             EEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccccccc-ccccccCCCchhH
Q 017061          255 VLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIE-LLDVKLCMIGNHQ  333 (378)
Q Consensus       255 V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~l~G~hq  333 (378)
                      |+| .||+.+..+.. .+.  ....+.++....          ...++...+..... ..+..... ...++++++|.||
T Consensus       220 Vln-~dd~~~~~~~~-~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~G~hn  284 (488)
T PRK03369        220 VVG-LDDSRAAALLD-TAP--APVRVGFRLGEP----------AAGELGVRDGHLVD-RAFADDLRLAPVASIPVPGPVG  284 (488)
T ss_pred             EEE-CCCHHHHHHHH-hCC--CcEEEEEeCCCC----------CcCCceEECCEEEE-eccCCccceechhhcCCCcHhH
Confidence            999 57776544322 111  112232211000          00000000000000 00000000 1136789999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          334 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       334 ~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ++|+++|++++..+     |++.+.|+++|++|.+.|||++.+
T Consensus       285 v~NalaAla~a~~l-----Gi~~e~i~~~L~~f~~~~gR~E~v  322 (488)
T PRK03369        285 VLDALAAAALARAV-----GVPAGAIADALASFRVGRHRAEVV  322 (488)
T ss_pred             HHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCccEEE
Confidence            99999999999999     999999999999997669999865

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=4e-30  Score=260.29  Aligned_cols=201  Identities=15%  Similarity=0.128  Sum_probs=143.7

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||+++|+.+|.++++-             .| +|.|..                         
T Consensus       108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~-------------gn-iG~~~~-------------------------  148 (438)
T PRK04663        108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVG-------------GN-IGVPAL-------------------------  148 (438)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEE-------------cc-cCHHHH-------------------------
Confidence            479999999999999999999999999887541             12 344321                         


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCe
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP  253 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~  253 (378)
                                   .....+.|++|+|+|+.+. +..   ...+|+++|||||++||+|+|| |+|+|+++|..|++..+.
T Consensus       149 -------------~~~~~~~~~~V~E~ss~~l-~~~---~~~~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~  210 (438)
T PRK04663        149 -------------DLLEQDAELYVLELSSFQL-ETT---SSLKLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAEL  210 (438)
T ss_pred             -------------hhhcCCCCEEEEEcChhhh-ccC---cccCCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCE
Confidence                         1223567999999999975 222   3345899999999999999997 999999999999987678


Q ss_pred             EEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhH
Q 017061          254 LVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQ  333 (378)
Q Consensus       254 ~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq  333 (378)
                      +|+| .|||.....    ..  ..++++|+.....     +......   ...+.+.. +    ......+.++++|.||
T Consensus       211 ~v~n-~dd~~~~~~----~~--~~~~~~~g~~~~~-----~~~~~~~---~~~~~~~~-~----~~~~~~~~l~l~G~hN  270 (438)
T PRK04663        211 AVVN-RDDKQTYPD----HA--ELQLVTFGFDQQD-----FGLAQHQ---GREWLADN-G----QPVLASAELKLVGRHN  270 (438)
T ss_pred             EEEe-CCCHHHHhh----hc--CCcEEEEecCCCC-----CCeEecC---CeEEEEeC-C----ceeeehhhcCCcchhh
Confidence            8999 577754221    11  3456666521100     0000000   00011100 0    0011247789999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          334 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       334 ~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ++|+++|++++..+     |++.+.|+++|++|.++++|++.+
T Consensus       271 v~NalaAia~a~~l-----Gi~~~~i~~~L~~f~g~~~R~e~v  308 (438)
T PRK04663        271 VANVLVVLALLDAA-----GVDYRKALDALKSYTGLTHRCQVV  308 (438)
T ss_pred             HHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEe
Confidence            99999999999999     999999999999998899998864

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=99.97  E-value=5.2e-30  Score=260.15  Aligned_cols=207  Identities=18%  Similarity=0.151  Sum_probs=143.9

Q ss_pred             cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (378)
Q Consensus        95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (378)
                      ++|+||||||||||++||+++|+.+|++++.++-.         ..+++|.|..                          
T Consensus       103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~---------~~gn~G~~~~--------------------------  147 (448)
T TIGR01081       103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGG---------VPGNFGVSAR--------------------------  147 (448)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCc---------ccccCccccc--------------------------
Confidence            49999999999999999999999999987532110         0111243331                          


Q ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCccccccccc--CCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc--C
Q 017061          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS--SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK--Y  250 (378)
Q Consensus       175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~--~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik--~  250 (378)
                                   .  .+.|++|+|+|+.+..+...+.+.  .+|+++|||||++||+|+|+ |+|+|+.+|++|++  +
T Consensus       148 -------------~--~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~~~  211 (448)
T TIGR01081       148 -------------L--GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRTVP  211 (448)
T ss_pred             -------------c--CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHhCC
Confidence                         1  347999999999987655444333  46899999999999999995 99999999999997  2


Q ss_pred             -CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccccc--c-ccccccc
Q 017061          251 -GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLS--I-ELLDVKL  326 (378)
Q Consensus       251 -~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~l  326 (378)
                       .+.+|+| .|++.+..++.+.   ...++.+++...              ++....+... ...+.+.  . ....+.+
T Consensus       212 ~~~~~i~n-~dd~~~~~~~~~~---~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~l  272 (448)
T TIGR01081       212 GEGLILCP-GRDQSLKDTLAKG---CWSEQEFFGEQG--------------EWQAEKITAD-GSHFDVLLDGEKVGEVKW  272 (448)
T ss_pred             CCCEEEEe-CCCHHHHHHHHhc---cCCCeEEECCCC--------------CEEEEEEecC-CcEEEEEECCceeEEEEe
Confidence             4578888 5777665443321   122344443110              0000000000 0000010  0 1124678


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      +++|.||+.|+++|++++..+     +++.+.|.++|++|.+||||++.+
T Consensus       273 ~l~G~hn~~Na~~A~a~~~~l-----gi~~~~i~~~L~~~~~~~~R~e~~  317 (448)
T TIGR01081       273 SLVGRHNMHNALMAIAAARHV-----GVAIEDACEALGSFVNAKRRLELK  317 (448)
T ss_pred             cCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence            999999999999999999999     999999999999998899999875

Alternate name: murein tripeptide ligase

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=99.97  E-value=8e-30  Score=259.69  Aligned_cols=205  Identities=19%  Similarity=0.162  Sum_probs=140.9

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||++||+.+|+++..+..-         .++.+|.+.                          
T Consensus       107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg---------~~~~~~~~~--------------------------  151 (461)
T PRK00421        107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGG---------ILNAAGTNA--------------------------  151 (461)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECc---------eeccCCccc--------------------------
Confidence            379999999999999999999999999753332110         011112111                          


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccc---cC
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII---KY  250 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Ii---k~  250 (378)
                                     ...+.|++|+|+|+.+..     +...+|+++|||||++||+|+|| |+|+|+++|..++   ++
T Consensus       152 ---------------~~~~~~~~V~E~ss~q~~-----~~~~~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~  210 (461)
T PRK00421        152 ---------------RLGNSDYFVAEADESDRS-----FLKLHPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPF  210 (461)
T ss_pred             ---------------ccCCCCEEEEECCCccch-----HhhcCCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCC
Confidence                           114579999999988642     22345899999999999999998 9999998887765   55


Q ss_pred             CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--cc-cccccc
Q 017061          251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--IE-LLDVKL  326 (378)
Q Consensus       251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~~i~l  326 (378)
                      ++.+|+| .|++.+..+..    +..+++++|+...            ..++...++...... .+.+.  .. ...+.+
T Consensus       211 ~~~~V~n-~dd~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l  273 (461)
T PRK00421        211 YGALVAC-GDDPELRELLP----RVSRPVITYGFSE------------DADFRAENIRQDGGGTHFDVLRRGEVLGDFTL  273 (461)
T ss_pred             CCEEEEE-CCCHHHHHHHH----hcCCCEEEecCCC------------CCcEEEEEEEEcCCceEEEEEECCceEEEEEe
Confidence            6788999 57776654432    2345677765211            001111011000000 01110  01 114678


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      +++|.||++|+++|++++..+     +++.+.|.++|++|..|||||+.+
T Consensus       274 ~l~G~h~~~N~~aA~a~~~~l-----gv~~~~i~~~l~~f~~~~~R~e~~  318 (461)
T PRK00421        274 PLPGRHNVLNALAAIAVALEL-----GIDDEAIREALATFKGVKRRFEEK  318 (461)
T ss_pred             cCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcccEEE
Confidence            999999999999999999999     999999999999998899999875

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=8e-30  Score=258.77  Aligned_cols=208  Identities=20%  Similarity=0.162  Sum_probs=145.6

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||+++|+..|.++++.             .| +|.|+...                       
T Consensus       108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~-------------g~-ig~~~~~~-----------------------  150 (450)
T PRK14106        108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVA-------------GN-IGYPLIDA-----------------------  150 (450)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEe-------------Cc-ccHHHHHH-----------------------
Confidence            689999999999999999999999999776541             11 34443210                       


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC---
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY---  250 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~---  250 (378)
                                   .....+.|++|+|+|+.+...    +...+|+++|||||++||+++|| |+|+|+.+|++|+++   
T Consensus       151 -------------~~~~~~~~~~v~E~~~~~~~~----~~~~~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~  212 (450)
T PRK14106        151 -------------VEEYGEDDIIVAEVSSFQLET----IKEFKPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRP  212 (450)
T ss_pred             -------------HhcCCCCCEEEEEcChhhhcc----ccccCCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCC
Confidence                         011236899999999875431    33445899999999999999998 999999999999975   


Q ss_pred             CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCc
Q 017061          251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIG  330 (378)
Q Consensus       251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G  330 (378)
                      .+.+++| .|+|.    +...+.+.++++++++....        ......+....+.+...+. ... ....+.+|++|
T Consensus       213 ~~~~vln-~d~~~----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~G  277 (450)
T PRK14106        213 SDYTVLN-YDDPR----TRSLAKKAKARVIFFSRKSL--------LEEGVFVKNGKIVISLGGK-EEE-VIDIDEIFIPG  277 (450)
T ss_pred             CCEEEEe-CCcHH----HHHHHhhcCceEEEEecCcc--------CcCceEEECCEEEEecCCC-cce-EEEHHHcCCCC
Confidence            4568888 56664    34445556778887763210        0000000000111110000 000 00124789999


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          331 NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       331 ~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      .||++|+++|+++++.|     |++++.|+++|++|.+|||||+.+
T Consensus       278 ~h~~~Na~aAia~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~i  318 (450)
T PRK14106        278 EHNLENALAATAAAYLL-----GISPDVIANTLKTFKGVEHRIEFV  318 (450)
T ss_pred             HHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence            99999999999999999     999999999999998899999976

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=7.9e-30  Score=251.81  Aligned_cols=220  Identities=22%  Similarity=0.221  Sum_probs=158.3

Q ss_pred             hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (378)
                      +.|...|.+.+.    ....|+|+||+||||||+||+++|.++|+.++..             ++  |. +....     
T Consensus        94 ~~r~e~Laelm~----~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~-------------iG--G~-~~~~g-----  148 (459)
T COG0773          94 ISRAEMLAELMR----FRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFL-------------IG--GI-LKNFG-----  148 (459)
T ss_pred             EcHHHHHHHHHh----CCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEE-------------EC--cc-cccCC-----
Confidence            344444444442    3578999999999999999999999999988763             22  21 11000     


Q ss_pred             HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (378)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t  236 (378)
                                                   .-......+|.|+|++..   |...+  ..+|.++|||||+.||+|+|| +
T Consensus       149 -----------------------------~na~~g~~~~fV~EADEs---D~sFl--~~~P~~aIvTNid~DH~D~y~-~  193 (459)
T COG0773         149 -----------------------------TNARLGSGDYFVAEADES---DSSFL--HYNPRVAIVTNIEFDHLDYYG-D  193 (459)
T ss_pred             -----------------------------cccccCCCceEEEEeccc---ccccc--cCCCCEEEEeCCCcchhhhhC-C
Confidence                                         001123458999999844   44443  456999999999999999997 9


Q ss_pred             HHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061          237 LETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER  313 (378)
Q Consensus       237 le~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (378)
                      ++++.+....+++   ..+.+|++ .|||..++++...   .+.++++|+...            ..++++.++.....+
T Consensus       194 ~~~i~~~F~~f~~~vp~~G~~v~~-~dd~~l~~l~~~~---~~~~v~tyG~~~------------~ad~~a~ni~~~~~~  257 (459)
T COG0773         194 LEAIKQAFHHFVRNVPFYGRAVVC-GDDPNLRELLSRG---CWSPVVTYGFDD------------EADWRAENIRQDGSG  257 (459)
T ss_pred             HHHHHHHHHHHHHhCCccceEEEE-CCCHHHHHHHhcc---cCCcEEeecCCC------------cCcEEEEEeEEeccc
Confidence            9999998877774   45667888 5889776665543   466788875321            134444444443332


Q ss_pred             -cccc--c-ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEecC
Q 017061          314 -DLKL--S-IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG  378 (378)
Q Consensus       314 -~~~~--~-~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~g  378 (378)
                       .|.+  . ....++.+|++|+||+.||++|+++|..+     |++.+.|+++|++| .+.+|||+++|
T Consensus       258 ~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~-----Gi~~~~i~~aL~~F-~GvkRRfe~~g  320 (459)
T COG0773         258 TTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVAREL-----GIDPEAIAEALASF-QGVKRRFELKG  320 (459)
T ss_pred             cEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhC-CCcceeeEEee
Confidence             1222  1 13567999999999999999999999999     99999999999999 79999999765

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=1.4e-29  Score=258.10  Aligned_cols=201  Identities=21%  Similarity=0.190  Sum_probs=144.6

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||++||+.+|.++.+              .+++|.|+.+.                       
T Consensus       115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GniG~p~~~~-----------------------  157 (468)
T PRK04690        115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRTAL--------------VGNIGVPLLEV-----------------------  157 (468)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEE--------------cCCCCcchHHH-----------------------
Confidence            47999999999999999999999999987654              12246665320                       


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCC--
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG--  251 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~--  251 (378)
                                   .....+.|++|+|+|+++..+....  ..+|+++|||||++||+|+|| |+++|..+|++|++..  
T Consensus       158 -------------~~~~~~~~~~VlE~ss~q~~~~~~~--~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~  221 (468)
T PRK04690        158 -------------LAPQPAPEYWAIELSSYQTGDVARS--GARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRP  221 (468)
T ss_pred             -------------hccCCCCcEEEEEecCCcccccccc--cCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCC
Confidence                         0112457999999999887554432  245899999999999999997 8999999999999753  


Q ss_pred             CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCch
Q 017061          252 RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGN  331 (378)
Q Consensus       252 ~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~  331 (378)
                      ..+|+| .|++.....     .....++++|+...      ++..       ..++.+.. ..    .....+.++++|.
T Consensus       222 ~~~v~n-~dd~~~~~~-----~~~~~~v~~~~~~~------~~~~-------~~~~~~~~-~~----~~~~~~~~~l~G~  277 (468)
T PRK04690        222 RIALLN-AADPRLAAL-----QLPDSEVVWFNHPD------GWHV-------RGDVVYRG-EQ----ALFDTALVPLPGR  277 (468)
T ss_pred             CeEEEe-CccHHHHHH-----hcCCCeEEEeeCCc------ccee-------cceEEEcC-Cc----eEEeeccccCccH
Confidence            567888 567754322     12235666664210      0000       00111110 00    0112357889999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          332 HQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       332 hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ||+.|+++|++++..|     +++.+.|+++|++|.+|||||+.+
T Consensus       278 h~~~Na~~A~a~~~~l-----gi~~~~i~~~l~~~~~~~gR~e~~  317 (468)
T PRK04690        278 HNRGNLCAVLAALEAL-----GLDAVALAPAAAGFRPLPNRLQEL  317 (468)
T ss_pred             hhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence            9999999999999999     999999999999998899999875

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=3.6e-29  Score=253.68  Aligned_cols=247  Identities=19%  Similarity=0.171  Sum_probs=176.5

Q ss_pred             HHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHH
Q 017061           80 MNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKI  159 (378)
Q Consensus        80 ~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~  159 (378)
                      ....+..+++|+.++++|+||||||||||++++.++++..|++++++++-.-       .++ .|...            
T Consensus        77 ~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~-------~~~-~~~~~------------  136 (475)
T COG0769          77 TTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGD-------ELS-PGILE------------  136 (475)
T ss_pred             HHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEee-------ecc-CCccc------------
Confidence            4456677899998899999999999999999999999999999998765321       010 01111            


Q ss_pred             HHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHH
Q 017061          160 KGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLET  239 (378)
Q Consensus       160 ~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~  239 (378)
                              ..+..+|..++++..  |.-+.+..++++|+|+++++.  .+..+..+.++++++||++.||+|++| |+|+
T Consensus       137 --------~~~~tTP~~~~l~~~--~~~~~d~~~e~~vmEvssh~l--~~~Rv~~~~f~v~~ftnls~DHlD~h~-t~e~  203 (475)
T COG0769         137 --------PTGLTTPEALDLQNL--LRDLLDRGAEIAVMEVSSHGL--VQGRVEGVTFDVGVFTNLSRDHLDYHG-TMEY  203 (475)
T ss_pred             --------ccCCCCccHHHHHHH--HHHHHHcCCcEEEEEeehhHH--HhCCccCceEEEEeccccCchhhcccC-cHHH
Confidence                    012334444444433  344678999999999999986  566677767889999999999999885 9999


Q ss_pred             HHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc---
Q 017061          240 IAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER---  313 (378)
Q Consensus       240 ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  313 (378)
                      |+..|..+|.   ....+|+| .|++....... ........++.++........         ..+  ++.....+   
T Consensus       204 Y~~aK~~lf~~~~~~~~~Vin-~dd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~--~i~~~~~g~~~  270 (475)
T COG0769         204 YGAAKAVLFESLPHSGEAVIN-PDDGHGLDYKE-RLKNALGDYITYGCDFKRPDL---------DYR--GIEESSSGSDF  270 (475)
T ss_pred             HHHHHHHHHhhcCCCccEEEc-cCCchHHHHHH-HHHhcCCCEEEeCCCCchhhh---------hhc--cceeeecccee
Confidence            9999999985   55678999 67887643322 222233356665421110000         000  11111111   


Q ss_pred             cccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061          314 DLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       314 ~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~  377 (378)
                      .+....+..++.+||+|.||++|+++|++++..|     |+|.+.|+++|+++.+.||||+.+.
T Consensus       271 ~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~l-----G~~~e~i~~~l~~~~~v~GRmE~v~  329 (475)
T COG0769         271 VFEPSGGIGEYELPLPGLFNVYNALAAVAAALAL-----GVDLEDILAGLETLKPVPGRMELVN  329 (475)
T ss_pred             EEEccCCceeEeccccchhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCCCcceEec
Confidence            1122234567899999999999999999999999     9999999999999988999999875

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.96  E-value=5e-29  Score=254.47  Aligned_cols=205  Identities=18%  Similarity=0.183  Sum_probs=141.1

Q ss_pred             cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (378)
Q Consensus        95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (378)
                      ++|+||||||||||++||+++|+..|+++.+.              +++|.|++..                        
T Consensus       122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~--------------Gnig~p~~~~------------------------  163 (473)
T PRK00141        122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAV--------------GNIGVPVSAA------------------------  163 (473)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEe--------------ccCChhHHHH------------------------
Confidence            69999999999999999999999999987642              2246555420                        


Q ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeE
Q 017061          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPL  254 (378)
Q Consensus       175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~  254 (378)
                                  +....+.|++|+|+|+.+. +...   ..+|+++|||||++||+|+|| |+|+|+++|..|++. ..+
T Consensus       164 ------------l~~~~~~~~~V~E~ss~~l-~~~~---~~~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~  225 (473)
T PRK00141        164 ------------LVAQPRIDVLVAELSSFQL-HWSP---TLTPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVA  225 (473)
T ss_pred             ------------HhcCCCCCEEEEecCCccc-ccCc---ccCCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEE
Confidence                        1123568999999999885 2333   345899999999999999997 999999999999975 578


Q ss_pred             EEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-cccccccccccccCCCchhH
Q 017061          255 VLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLSIELLDVKLCMIGNHQ  333 (378)
Q Consensus       255 V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~l~G~hq  333 (378)
                      |+| .|||....+..+.   ...++++|+......  .      ..++....+.....+ .+.+   ...+.+|++|.||
T Consensus       226 vln-~Dd~~~~~~~~~~---~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~hn  290 (473)
T PRK00141        226 VIG-ADDEYVVQLTSAA---DLSGLIGFTMGEPAA--G------QVGVRDGELVDNAFGQNVVL---ASAEGISPAGPAG  290 (473)
T ss_pred             EEE-CCCHHHHHHHhhc---CCCcEEEEeCCCCCc--C------cceEECCEEEEecCCCceEE---eehhhcCCCcHhH
Confidence            899 5788654432211   123566664211000  0      000000011111000 0111   0125689999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCce-eEEEe
Q 017061          334 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRA-EIFLM  376 (378)
Q Consensus       334 ~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pg-R~~~~  376 (378)
                      ++|+++|++++..+     +++.+.|+++|++| .||+ |++.+
T Consensus       291 ~~Na~aA~a~~~~l-----gi~~~~i~~~l~~~-~~~~~R~e~~  328 (473)
T PRK00141        291 VLDALAAAAVARSQ-----GVAPEAIARALSSF-EVAGHRGQVV  328 (473)
T ss_pred             HHHHHHHHHHHHHc-----CCCHHHHHHHHhhC-CCCCCceEEE
Confidence            99999999999999     99999999999998 5666 66543

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=99.96  E-value=4.9e-29  Score=274.29  Aligned_cols=221  Identities=21%  Similarity=0.198  Sum_probs=152.1

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||+.||+++|+..|.+...+.+++.  ++     +.+|.|++                        
T Consensus       602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn--~n-----~~~g~~~~------------------------  650 (958)
T PRK11929        602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGN--FN-----NEIGVPLT------------------------  650 (958)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcc--cC-----CCcchHHH------------------------
Confidence            568999999999999999999999999766555555542  11     21243321                        


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---  249 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---  249 (378)
                                   .+..+.+.|++|+|+|+++..+...+....+|+++|||||++||+|+|| |+|+|+++|+.|++   
T Consensus       651 -------------l~~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~-s~e~y~~aK~~i~~~~~  716 (958)
T PRK11929        651 -------------LLRLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMH-SVEAVARAKGEIIAALP  716 (958)
T ss_pred             -------------HhcCCCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHccCC
Confidence                         0112467899999999987666554443346899999999999999997 89999999999994   


Q ss_pred             CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccc-cchhccccccCCCCCCcccceeEeecc--cccc--ccccccc
Q 017061          250 YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAG-IRATINGLSMFNDRPCQSCDIIVQAER--DLKL--SIELLDV  324 (378)
Q Consensus       250 ~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i  324 (378)
                      +++.+|+| .|+|....+.. .+.  ..++++|+... .......  +.       .++.....+  .+.+  ..+..++
T Consensus       717 ~~~~~Vln-~Dd~~~~~~~~-~~~--~~~~~~fg~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~  783 (958)
T PRK11929        717 EDGVAVVN-GDDPYTAIWAK-LAG--ARRVLRFGLQPGADVYAEK--IA-------KDISVGEAGGTRCQVVTPAGSAEV  783 (958)
T ss_pred             CCCEEEEE-CCcHHHHHHHH-hhc--CCcEEEEeCCCCcceEeee--cc-------cceeecCCCceEEEEEECCceEEE
Confidence            46789999 57776543322 211  23455554211 0000000  00       000000000  0111  1122457


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          325 KLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       325 ~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ++|++|.||++|+++|++++..+     |++.+.|.++|++|.++||||+.+
T Consensus       784 ~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~f~~~~gR~e~~  830 (958)
T PRK11929        784 YLPLIGEHNLRNALAAIACALAA-----GASLKQIRAGLERFQPVAGRMQRR  830 (958)
T ss_pred             EeCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCCceEE
Confidence            89999999999999999999999     999999999999998899999875

>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment

Probab=99.96  E-value=9.7e-29  Score=222.01  Aligned_cols=181  Identities=29%  Similarity=0.369  Sum_probs=121.7

Q ss_pred             EeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHH
Q 017061           99 IAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFE  178 (378)
Q Consensus        99 VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE  178 (378)
                      ||||||||||++||++||+++|++++.+++-              +..+.                              
T Consensus         1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~--------------~~~~~------------------------------   36 (188)
T PF08245_consen    1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNT--------------NNQIG------------------------------   36 (188)
T ss_dssp             EESSSSHHHHHHHHHHHHHHTTEEEEEESSC--------------HHHHH------------------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcccccccc--------------cchHH------------------------------
Confidence            8999999999999999999999988774320              00010                              


Q ss_pred             HHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---CCCeEE
Q 017061          179 VLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---YGRPLV  255 (378)
Q Consensus       179 ~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---~~~~~V  255 (378)
                        ....+....+.++|++|+|+|+++..+ ..+....+|+++|||||++||+++++ |+++|+++|+.+++   +++.+|
T Consensus        37 --~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v  112 (188)
T PF08245_consen   37 --LPLLLLNAREGGADIAVLEVSEGGLGD-ERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAV  112 (188)
T ss_dssp             --HHHHHHHHHHTTSSEEEEEESSSCCCT-STTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEE
T ss_pred             --HHHHHhhhcccccceeeeeccCCcccc-ceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEE
Confidence              011122344568999999999997665 33333256899999999999999995 99999999999997   467899


Q ss_pred             EcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccc---ccccccccccCCCch
Q 017061          256 LGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLK---LSIELLDVKLCMIGN  331 (378)
Q Consensus       256 ~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~i~l~l~G~  331 (378)
                      +| .|||..    ...+...++++++|+...            ..++....+....++ .+.   ......++.+|++|.
T Consensus       113 ~n-~dd~~~----~~~~~~~~~~v~~~~~~~------------~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~  175 (188)
T PF08245_consen  113 LN-ADDPEL----AEIAANSKCKVITFGLDN------------SADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGK  175 (188)
T ss_dssp             EE-TTSHHH----HHHHHHHTTTEEEEESSS------------SSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSH
T ss_pred             ec-CCCHHH----HHHHHhcCCcEEEeccCc------------ccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCH
Confidence            99 578843    333444566788876322            111222222221111 111   122345689999999


Q ss_pred             hHHHHHHHHHHHH
Q 017061          332 HQLHNALTATCAA  344 (378)
Q Consensus       332 hq~~NalaAlaaa  344 (378)
                      ||++|+++|+++|
T Consensus       176 hn~~NalaA~a~a  188 (188)
T PF08245_consen  176 HNVENALAAIAAA  188 (188)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999986

The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....

>PRK14016 cyanophycin synthetase; Provisional

Probab=99.96  E-value=1.4e-28  Score=261.83  Aligned_cols=248  Identities=23%  Similarity=0.254  Sum_probs=161.1

Q ss_pred             HHHHHHHHhCC--CCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061           79 RMNRLMDRLGN--PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (378)
Q Consensus        79 r~~~ll~~lg~--p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (378)
                      ....++..|-.  +..+.|+|+||||||||||++||+++|+..|++||+.+|+++.       +|  +..+...+.    
T Consensus       463 v~~~Iid~L~~~~~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~-------i~--~~~i~~gd~----  529 (727)
T PRK14016        463 VGEAIVDMLFPEGDDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVY-------ID--GRLIDKGDC----  529 (727)
T ss_pred             HHHHHHHHhcccCCCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEE-------EC--CEEeccccc----
Confidence            34566666543  3456799999999999999999999999999999999887643       33  322211000    


Q ss_pred             HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcC-C
Q 017061          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-G  235 (378)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG-~  235 (378)
                                        +.+..    +..++.+.++|++|+|+|+++.....  +...+|+++|||||++||++++| +
T Consensus       530 ------------------t~p~s----~~~ll~~~~~d~aVlE~s~~~il~~g--l~~~~pdvaVvTNI~~DHL~~~~~~  585 (727)
T PRK14016        530 ------------------TGPKS----ARRVLMNPDVEAAVLETARGGILREG--LAYDRCDVGVVTNIGEDHLGLGGIN  585 (727)
T ss_pred             ------------------cCHHH----HHHHhcCCCCCEEEEEcCCCchhhcC--CcccccCeEEEcCCCHHHhhccCCC
Confidence                              00000    00134567889999999988864322  22335899999999999999886 7


Q ss_pred             CHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEeccc-ccchhccccccCCCCCCcc-c-ceeE
Q 017061          236 SLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDA-GIRATINGLSMFNDRPCQS-C-DIIV  309 (378)
Q Consensus       236 tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~-~~~~  309 (378)
                      |+|+|+.+|+.+++   +++.+|+| .|||.+..    .+....+++++|+.. +.+....... ..+..+.. . .+.+
T Consensus       586 t~E~~~~~K~~i~~~v~~~g~aVlN-aDD~~~~~----~~~~~~~~vi~fs~~~~~~~~~~~~~-~~~~~~~~~~~~i~~  659 (727)
T PRK14016        586 TLEDLAKVKRVVVEAVKPDGYAVLN-ADDPMVAA----MAERCKGKVIFFSMDPDNPVIAEHRA-QGGRAVYVEGDYIVL  659 (727)
T ss_pred             CHHHHHHHHHHHHhhhCCCCeEEEc-CCCHHHHH----HHHhCCCcEEEEeCCCCChHHHHHHH-hCCceEEEeCCEEEE
Confidence            99999999999984   56789999 57886533    334445677777522 1110000000 00000000 0 0011


Q ss_pred             eeccccccc-ccccccccCCCc--hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC----CceeEEE
Q 017061          310 QAERDLKLS-IELLDVKLCMIG--NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF----WRAEIFL  375 (378)
Q Consensus       310 ~~~~~~~~~-~~~~~i~l~l~G--~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~----~pgR~~~  375 (378)
                      .. +..... ....++++.++|  .||++|+++|+|+|+.+     |++.+.|+++|++|.+    .|||+..
T Consensus       660 ~~-g~~~~~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l-----Gi~~~~I~~~L~sF~~~~~~~pGR~n~  726 (727)
T PRK14016        660 AE-GGWEIRIISLADIPLTLGGKAGFNIENALAAIAAAWAL-----GIDIELIRAGLRTFVSDAAQAPGRFNL  726 (727)
T ss_pred             Ee-CCcceeeccccccceecCCcchhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCccCCCccccc
Confidence            00 100000 011234554466  79999999999999999     9999999999999975    8999864

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.96  E-value=2e-28  Score=249.14  Aligned_cols=202  Identities=16%  Similarity=0.131  Sum_probs=142.1

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||+.||+++|+..|+++..             ..| +|.|+...                      
T Consensus       116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~-------------~gn-iG~p~~~~----------------------  159 (458)
T PRK01710        116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWV-------------GGN-IGTPLFSN----------------------  159 (458)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEE-------------CCc-cChhHHHH----------------------
Confidence            457999999999999999999999999988642             112 45554310                      


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---  249 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---  249 (378)
                                    +....+.|++|+|+|+.+..+..     .+|+++|||||++||+|+|| |+|+|+++|..|++   
T Consensus       160 --------------~~~~~~~~~~VlE~~~~~~~~~~-----~~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~  219 (458)
T PRK01710        160 --------------IEEIKEEDKVVLELSSFQLMTMD-----VSPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQS  219 (458)
T ss_pred             --------------HhhCCCCCEEEEEcCccccccCC-----CCCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCC
Confidence                          01123679999999998776432     35899999999999999997 99999999999985   


Q ss_pred             CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCc-ccceeEeecccccccccccccccCC
Q 017061          250 YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQ-SCDIIVQAERDLKLSIELLDVKLCM  328 (378)
Q Consensus       250 ~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~l  328 (378)
                      +++.+|+| .|||....+    +.....++++|+.....         ....+. ...+.+.  +.    .-...+.+++
T Consensus       220 ~~~~~v~n-~Dd~~~~~~----~~~~~~~~~~fg~~~~~---------~~~~~~~~~~~~~~--~~----~~~~~~~l~l  279 (458)
T PRK01710        220 ENDLLVLN-KDNEITNGM----EKEAKGDVVKFSRKEKV---------YEGAYLKNGKLYIR--GK----EVCKKDDIKL  279 (458)
T ss_pred             CCCEEEEe-CCcHHHHHH----HhhcCCcEEEEeCCCCC---------CCceEEeCCEEEEc--Cc----eEEEhhhcCC
Confidence            46789999 577755433    22223456666521100         000000 0001111  00    0012467899


Q ss_pred             CchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          329 IGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       329 ~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      +|.||++|+++|++++..      .++.+.|.++|++|.+.++||+.+
T Consensus       280 ~G~hnv~NalaA~a~a~~------~i~~~~i~~~L~~f~~~~~R~e~~  321 (458)
T PRK01710        280 KGMHNVENLLAAFCAVND------DVSIESMKKVATTFSGVEHRCEFV  321 (458)
T ss_pred             ccHhHHHHHHHHHHHHHh------CCCHHHHHHHHHhCCCCCcceEEE
Confidence            999999999999999864      499999999999998899999864

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=99.96  E-value=2e-28  Score=248.52  Aligned_cols=206  Identities=20%  Similarity=0.197  Sum_probs=138.3

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||++||+.+|+++..+.            .+++|.+...                        
T Consensus        99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~------------gg~~~~~~~~------------------------  142 (448)
T TIGR01082        99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVV------------GGLVKEAGTN------------------------  142 (448)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEE------------CcccccCCcc------------------------
Confidence            3799999999999999999999999998433221            0111222211                        


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHh-hcCCCHHHHHHHHhccccC--
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTA-ALGGSLETIAMAKSGIIKY--  250 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld-~lG~tle~ia~~Ka~Iik~--  250 (378)
                                    ......|++|+|+++.+...     ...+|+++|||||++||+| ++ +|+|+|+.+|..|++.  
T Consensus       143 --------------~~~~~~~~~V~E~s~~q~~~-----~~~~p~vaVitNI~~DHld~~~-~s~e~y~~aK~~i~~~~~  202 (448)
T TIGR01082       143 --------------ARLGSGEYLVAEADESDASF-----LHLQPNVAIVTNIEPDHLDTYG-SSFERLKAAFEKFIHNLP  202 (448)
T ss_pred             --------------cccCCCCEEEEECCCccchH-----hhccCCEEEEecCChhhcchhc-CCHHHHHHHHHHHHHhCC
Confidence                          01134699999999876531     2335799999999999999 65 5999999999999964  


Q ss_pred             -CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--c-cccccc
Q 017061          251 -GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--I-ELLDVK  325 (378)
Q Consensus       251 -~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~i~  325 (378)
                       ++.+|+| .|||....+.    +....++++|+....           ..++....+...... .+.+.  . ....+.
T Consensus       203 ~~~~~V~n-~dd~~~~~~~----~~~~~~~~~f~~~~~-----------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  266 (448)
T TIGR01082       203 FYGLAVIC-ADDPVLRELV----PKATEQVITYGGSGE-----------DADYRAENIQQSGAEGKFSVRGKGKLYLEFT  266 (448)
T ss_pred             CCCEEEEE-CCCHHHHHHH----hhcCCCEEEeCCCCC-----------CCcEEEEEEEecCCeEEEEEEECCceEEEEE
Confidence             6789999 5777654432    222335555542100           001111001000000 01110  0 112467


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          326 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       326 l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ++++|.||++|+++|++++..+     +++.+.|.++|++|...++|++.+
T Consensus       267 ~~l~G~hn~~N~~aA~a~~~~l-----gi~~~~i~~~l~~f~~~~~R~e~~  312 (448)
T TIGR01082       267 LNLPGRHNVLNALAAIAVALEL-----GIDFEAILRALANFQGVKRRFEIL  312 (448)
T ss_pred             ecCccHhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCccceEE
Confidence            8999999999999999999999     999999999999996667777654

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=99.94  E-value=2e-26  Score=249.15  Aligned_cols=200  Identities=14%  Similarity=0.108  Sum_probs=137.0

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||++||+.+|+++..+..          .+  +|.++..                        
T Consensus       104 ~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~g----------G~--~g~~~~~------------------------  147 (809)
T PRK14573        104 QISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIG----------GL--NQEGLNG------------------------  147 (809)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEEC----------Cc--ccccccc------------------------
Confidence            37999999999999999999999999986433211          11  2444431                        


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---C
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---Y  250 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---~  250 (378)
                                     ...+.|++|+|+|+.+ .+    +...+|+++|||||++||+|+|++|+|+|+.+|..+++   +
T Consensus       148 ---------------~~~~~d~~V~E~ss~~-~~----~~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~  207 (809)
T PRK14573        148 ---------------YSGSSEYFVAEADESD-GS----LKHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQ  207 (809)
T ss_pred             ---------------ccCCCCEEEEECCCCc-ch----hheeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCC
Confidence                           1134799999999884 22    23445899999999999999995599999999988874   3


Q ss_pred             CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--c-ccccccc
Q 017061          251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--I-ELLDVKL  326 (378)
Q Consensus       251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~i~l  326 (378)
                      ++.+|+| .||+....    .+   ....+.++..              .++....+...... .+.+.  . ....+++
T Consensus       208 ~~~~V~N-~Dd~~~~~----~~---~~~~~g~~~~--------------~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l  265 (809)
T PRK14573        208 INKCFYN-GDCPRLKG----CL---QGHSYGFSSS--------------CDLHILSYYQEGWRSYFSAKFLGVVYQDIEL  265 (809)
T ss_pred             CCEEEEe-CCCHHHHh----hc---ccEEEccCCC--------------CcEEEEEEEecCCeEEEEEEECCceEEEEEe
Confidence            5678999 57774322    11   1222222210              00000001000000 01110  0 1134778


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      +++|.||++|+++|++++..+     +++.+.|.++|++|..||||++.+
T Consensus       266 ~l~G~hn~~Na~aAia~~~~l-----gi~~~~i~~~L~~f~~~~~R~e~~  310 (809)
T PRK14573        266 NLVGMHNVANAAAAMGIALTL-----GIDEGAIRNALKGFSGVQRRLERK  310 (809)
T ss_pred             ccccHhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence            999999999999999999999     999999999999998899999865

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.93  E-value=1.8e-25  Score=225.13  Aligned_cols=183  Identities=19%  Similarity=0.164  Sum_probs=126.1

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++|+||||||||||++||+++|+..|.++.+.              +++|.|+..                       
T Consensus       101 ~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~--------------GniG~p~l~-----------------------  143 (418)
T PRK00683        101 RYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAM--------------GNIGIPILD-----------------------  143 (418)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEE--------------CCcCHHHHH-----------------------
Confidence            3579999999999999999999999999866542              224554310                       


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~  252 (378)
                                      ...+.|++|+|+|+.+..+...  ...+|+++|||||++||+|+|| |+|+|+++|..|+..  
T Consensus       144 ----------------~~~~~~~~V~E~~s~~~~~~~~--~~~~~~iavitNi~~dHld~~~-s~e~y~~aK~~i~~~--  202 (418)
T PRK00683        144 ----------------GMQQPGVRVVEISSFQLADQEK--SYPVLSGGMILNISDNHLDYHG-NLSAYFQAKQNIAKC--  202 (418)
T ss_pred             ----------------HhhcCCEEEEEechhhhCcCcc--cCCCccEEEEecCChhHhccCC-CHHHHHHHHHHHHHh--
Confidence                            1124799999999997643222  2223589999999999999997 999999999999852  


Q ss_pred             eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchh
Q 017061          253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNH  332 (378)
Q Consensus       253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~h  332 (378)
                        +.+ .++..    ..        ....++..        + ......+  .+.         ..   ....++++|.|
T Consensus       203 --~~~-~~~~~----~~--------~~~~~~~~--------~-~~~~~~~--~~~---------~~---~~~~~~~~g~h  244 (418)
T PRK00683        203 --LRN-PDDLW----VG--------DERSYGHS--------Y-LEYVQEI--MRL---------LD---KGSALKPLYLH  244 (418)
T ss_pred             --hhC-ccccc----cc--------ccCCcCce--------e-ecCcchh--hhh---------hc---cccccCCCccc
Confidence              122 12110    00        00111100        0 0000000  000         00   01346789999


Q ss_pred             HHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          333 QLHNALTATCAALC-LRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       333 q~~NalaAlaaa~~-L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |++|+++|+++++. +     +++.+.|+++|++|.+||||++.+
T Consensus       245 n~~Na~aA~a~~~~l~-----g~~~~~i~~~l~~~~~~~~R~e~v  284 (418)
T PRK00683        245 DRYNYCAAYALANEVF-----PISEESFLEAVATFEKPPHRMEYL  284 (418)
T ss_pred             hHHHHHHHHHHHHHhc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            99999999999998 6     999999999999998999999875

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.91  E-value=1.2e-23  Score=210.14  Aligned_cols=177  Identities=20%  Similarity=0.169  Sum_probs=124.2

Q ss_pred             cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (378)
Q Consensus        95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (378)
                      ++|+||||||||||++||+++|+++|..++               .| +|.|++.                         
T Consensus        90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~---------------gn-iG~p~~~-------------------------  128 (401)
T PRK03815         90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSG---------------GN-IGTPLAE-------------------------  128 (401)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHHHCCCcEE---------------EE-ecHhHHh-------------------------
Confidence            489999999999999999999999984321               12 3655431                         


Q ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---CC
Q 017061          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---YG  251 (378)
Q Consensus       175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---~~  251 (378)
                                    ...+.|++|+|+|+.+ ++.+..+   +|+++|||||++||+|+|| |+|+|+++|..|++   ++
T Consensus       129 --------------~~~~~~~~V~E~ss~~-~~~~~~~---~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~  189 (401)
T PRK03815        129 --------------LDKNAKIWVLETSSFT-LHYTNKA---KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEG  189 (401)
T ss_pred             --------------cCCCCCEEEEECChHH-hhCCccC---CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcC
Confidence                          1345799999998876 2344444   4799999999999999997 99999999999985   35


Q ss_pred             CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCch
Q 017061          252 RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGN  331 (378)
Q Consensus       252 ~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~  331 (378)
                      +.+|+| .||+..    .     ...++++|+...              ++. ..+.+.        ..    .+.+.+.
T Consensus       190 ~~~v~n-~dd~~~----~-----~~~~~~~fg~~~--------------~~~-~~~~~~--------~~----~~~~~~~  232 (401)
T PRK03815        190 DVAILP-KKFKNT----P-----TKAQKIFYEDEE--------------DLA-EKFGID--------SE----KINFKGP  232 (401)
T ss_pred             CEEEEe-cccccc----c-----cCCcEEEEecCC--------------ccc-cceeEe--------hH----hcCCchH
Confidence            678888 466632    1     124555554110              000 001110        00    1223344


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          332 HQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       332 hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      | +.|+++|++++..+     |+  +.+.++|++|.+.++|++.+
T Consensus       233 ~-~~NalaA~a~a~~~-----G~--~~~~~~L~~f~~~~~R~e~~  269 (401)
T PRK03815        233 F-LLDALLALAVYKIL-----FD--ELDYERLNAFKIGKHKLEEF  269 (401)
T ss_pred             H-HHHHHHHHHHHHHh-----Cc--HHHHHHHHhCCCCCceEEEE
Confidence            4 99999999999999     74  56778999998888888764

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.77  E-value=5.3e-08  Score=91.94  Aligned_cols=165  Identities=20%  Similarity=0.279  Sum_probs=109.1

Q ss_pred             HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee----eCCcccc--cceEEeeCCCCcccCHHH
Q 017061           80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHIKT--IRERMNVGRLNRPVSAKA  151 (378)
Q Consensus        80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~----tSp~l~~--~~eri~in~~G~~is~~~  151 (378)
                      -++++..+-....+..+|+|||+  .||+|...-|..-|.+.|++|++.    +||+-..  ..+|++++  .....+..
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~--~~~~~~~v  114 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQ--RLAVDPGV  114 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHH--hhccCCCe
Confidence            34566665444456679999998  889999999999999999999987    7786433  46677776  44433333


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCC-cccccccccCCCcEEEEccCChhh
Q 017061          152 LNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGA-RDATNIISSSGLAASVITTIGEEH  229 (378)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~-~D~t~~~~~~~p~vaVITNI~~DH  229 (378)
                      |.+..            ...+.++..---|.-+..++...++|++++|+ |.|+. -|..+.++.   -+.|.+.     
T Consensus       115 FiRs~------------~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt---~~~v~~p-----  174 (323)
T COG1703         115 FIRSS------------PSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADT---FLVVMIP-----  174 (323)
T ss_pred             EEeec------------CCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcce---EEEEecC-----
Confidence            33221            12344555555566666778889999999999 77763 233444432   2333333     


Q ss_pred             HhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHH
Q 017061          230 TAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDE  271 (378)
Q Consensus       230 ld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~  271 (378)
                        -.|   +++-..|+|++.=+..+|+|+.|.+.+....+..
T Consensus       175 --g~G---D~~Q~iK~GimEiaDi~vINKaD~~~A~~a~r~l  211 (323)
T COG1703         175 --GAG---DDLQGIKAGIMEIADIIVINKADRKGAEKAAREL  211 (323)
T ss_pred             --CCC---cHHHHHHhhhhhhhheeeEeccChhhHHHHHHHH
Confidence              233   4445569999998889999987766665544443

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.65  E-value=3.2e-08  Score=92.15  Aligned_cols=165  Identities=21%  Similarity=0.297  Sum_probs=95.5

Q ss_pred             HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee----eCCcccc--cceEEeeCCCCcccCHHH
Q 017061           80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHIKT--IRERMNVGRLNRPVSAKA  151 (378)
Q Consensus        80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~----tSp~l~~--~~eri~in~~G~~is~~~  151 (378)
                      -..+|+.+-....+..+|+|||+  .||+|...-+...|.+.|++|++.    |||.-..  ..+|++++  ...-.+..
T Consensus        15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~--~~~~d~~v   92 (266)
T PF03308_consen   15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQ--ELSRDPGV   92 (266)
T ss_dssp             HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCH--HHHTSTTE
T ss_pred             HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhc--CcCCCCCE
Confidence            45666666544456789999998  889999999999999999999987    6775322  34555554  11111111


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCCcccccccccCCCcEEEEccCChhhH
Q 017061          152 LNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGARDATNIISSSGLAASVITTIGEEHT  230 (378)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~D~t~~~~~~~p~vaVITNI~~DHl  230 (378)
                      |.+.+            ...+++.-.--.|.-+..++...++|++++|+ |.|+.  .+.+.+..+..+-|++.=.-|-+
T Consensus        93 fIRS~------------atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs--E~~I~~~aD~~v~v~~Pg~GD~i  158 (266)
T PF03308_consen   93 FIRSM------------ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS--EVDIADMADTVVLVLVPGLGDEI  158 (266)
T ss_dssp             EEEEE---------------SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH--HHHHHTTSSEEEEEEESSTCCCC
T ss_pred             EEeec------------CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc--HHHHHHhcCeEEEEecCCCccHH
Confidence            11000            01233333333444455667778999999999 88873  23333333345667777655655


Q ss_pred             hhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHH
Q 017061          231 AALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRD  270 (378)
Q Consensus       231 d~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~  270 (378)
                      +..          |+||+.-...+|+|+.|.|.+.....+
T Consensus       159 Q~~----------KaGimEiaDi~vVNKaD~~gA~~~~~~  188 (266)
T PF03308_consen  159 QAI----------KAGIMEIADIFVVNKADRPGADRTVRD  188 (266)
T ss_dssp             CTB-----------TTHHHH-SEEEEE--SHHHHHHHHHH
T ss_pred             HHH----------hhhhhhhccEEEEeCCChHHHHHHHHH
Confidence            544          888888778899998777766655544

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.37  E-value=0.0067  Score=59.41  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=80.6

Q ss_pred             HHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHH
Q 017061           81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHK  158 (378)
Q Consensus        81 ~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~  158 (378)
                      ..+++.+-....+..+|+|+|.  .||||.+..+...|+..|++|++++-            + ...+.+...+..-..+
T Consensus        43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~------------D-p~s~~~~gallgd~~r  109 (332)
T PRK09435         43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV------------D-PSSTRTGGSILGDKTR  109 (332)
T ss_pred             HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe------------C-CCccccchhhhchHhH
Confidence            4555554322345579999998  68999999999999999999988521            0 0111111111100000


Q ss_pred             HHHHHHHHHhh---------cCCCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCCcccccccccCCCcEEEEccCChh
Q 017061          159 IKGVLDEAIRL---------ENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGARDATNIISSSGLAASVITTIGEE  228 (378)
Q Consensus       159 ~~~~~~~~~~~---------~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~D~t~~~~~~~p~vaVITNI~~D  228 (378)
                      +.    ++...         +.+.+....-.+.-+...+...+.|++++|+ |.++.  .+.+....  |+.++..    
T Consensus       110 ~~----~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs--~~~i~~~a--D~vlvv~----  177 (332)
T PRK09435        110 ME----RLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQS--ETAVAGMV--DFFLLLQ----  177 (332)
T ss_pred             HH----hhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccc--hhHHHHhC--CEEEEEe----
Confidence            00    00000         0111221122233344456667899999999 55532  23344433  4444431    


Q ss_pred             hHhhcCCCHHHHHHHHhccccCCCeEEEcCCC
Q 017061          229 HTAALGGSLETIAMAKSGIIKYGRPLVLGGPF  260 (378)
Q Consensus       229 Hld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d  260 (378)
                        + . .+-+++-..|++++.-...+|+|+.|
T Consensus       178 --~-p-~~gd~iq~~k~gi~E~aDIiVVNKaD  205 (332)
T PRK09435        178 --L-P-GAGDELQGIKKGIMELADLIVINKAD  205 (332)
T ss_pred             --c-C-CchHHHHHHHhhhhhhhheEEeehhc
Confidence              0 1 24455555677777655678889765

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.13  E-value=0.0062  Score=58.87  Aligned_cols=48  Identities=29%  Similarity=0.373  Sum_probs=39.6

Q ss_pred             HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      .+.+++.+-......++|+|+|.  .||||++..+...|...|++|+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~   69 (300)
T TIGR00750        20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA   69 (300)
T ss_pred             HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            46677777555556789999996  7899999999999999999998753

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=96.91  E-value=0.003  Score=63.33  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=67.3

Q ss_pred             eCCCchhhhhhcccccc--cccccCCCCCccHHHHHHHHHhcchhhhcCCCCCCCCCC----CCCCChHHHHHHHHHhCC
Q 017061           16 YSPTSRGYFKKFSIGSK--SCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDS----DDGFDLGRMNRLMDRLGN   89 (378)
Q Consensus        16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~----~~~~~L~r~~~ll~~lg~   89 (378)
                      ++|..|..+..|++..=  -|-.    .    .+.+.|.+......    ++..+.+.    ..++.|+.++++++.++.
T Consensus        29 ~~p~~~k~~r~~~i~e~A~~~gv----s----~~tiR~ye~~gll~----~~~~~~~gr~~~~~~ftL~ei~~lr~~~~~   96 (388)
T PRK13705         29 DSPEARKITRRWRIGEAADLVGV----S----SQAIRDAEKAGRLP----HPDMEMRGRVEQRVGYTIEQINHMRDVFGT   96 (388)
T ss_pred             CCCccccccCCCCHHHHHHHHCc----C----HHHHHHHHHcCCCC----CCCcCCCCcchhhcCcCHHHHHHHHHhhcc
Confidence            47999999988877432  2221    1    24566665543221    11011111    125889999999988865


Q ss_pred             CC-----CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           90 PH-----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        90 p~-----~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +.     ...++|+|+   |-.|||||+.-|++.|...|+||.+.
T Consensus        97 ~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI  141 (388)
T PRK13705         97 RLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV  141 (388)
T ss_pred             cccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence            43     346789999   88999999999999999999999886

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=96.67  E-value=0.026  Score=57.80  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ++.|-||||   .|||+++..|...|++.|++|+.|-
T Consensus         3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK   39 (451)
T PRK01077          3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFK   39 (451)
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceee
Confidence            467888887   5699999999999999999998874

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=96.52  E-value=0.015  Score=58.29  Aligned_cols=53  Identities=23%  Similarity=0.364  Sum_probs=46.0

Q ss_pred             CCChHHHHHHHHHhCCCC-----CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           74 GFDLGRMNRLMDRLGNPH-----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        74 ~~~L~r~~~ll~~lg~p~-----~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.|+.+.++.+.++.+.     .+.++|+|+   |-.|||||+.-|++.|...|+||.+.
T Consensus        81 ~ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI  141 (387)
T PHA02519         81 GYTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI  141 (387)
T ss_pred             eEcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence            488999999999987653     346799999   78899999999999999999999876

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=95.88  E-value=0.033  Score=56.21  Aligned_cols=100  Identities=23%  Similarity=0.405  Sum_probs=60.6

Q ss_pred             eeCCCchhhhhhcccccc--cccccCCCCCccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCC---
Q 017061           15 FYSPTSRGYFKKFSIGSK--SCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGN---   89 (378)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~---   89 (378)
                      -++|.+|.-+..|.+..=  -|-+    .    ...+.|++.-. .   +.++....+....+.++.+.++-+.++.   
T Consensus        37 ~~~p~~~k~~r~ft~~e~A~~lgv----s----~~tlr~~~~~g-~---~~~~~~~~~grR~yt~~di~~lr~~l~~~~~  104 (405)
T PRK13869         37 LFPPTSHKSLRKFTSGEAARLMKI----S----DSTLRKMTLAG-E---GPQPELASNGRRFYTLGQINEIRQMLAGSTR  104 (405)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHhCc----C----HHHHHHHHHcC-C---CCCCccCCCCceeecHHHHHHHHHHHHhhcc
Confidence            468999988877755322  2222    1    12344433211 0   1111111112223777776666665541   


Q ss_pred             --------CC----CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           90 --------PH----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        90 --------p~----~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                              |.    .+.++|+|+   |-.|||||+.-|++.|...|+||.+.
T Consensus       105 ~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI  156 (405)
T PRK13869        105 GRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV  156 (405)
T ss_pred             ccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence                    22    356899999   77899999999999999999999876

>cd03114 ArgK-like The function of this protein family is unkown

Probab=95.71  E-value=0.061  Score=46.42  Aligned_cols=60  Identities=20%  Similarity=0.371  Sum_probs=39.9

Q ss_pred             HHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcC
Q 017061          188 FAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGG  258 (378)
Q Consensus       188 f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~  258 (378)
                      ....+.|++++++ .|-..+....+...+ .+-|+|+-+         -.+.|+-.|..++.....+++|+
T Consensus        87 ~~~~~~D~iiIDt-aG~~~~~~~~~~~Ad-~~ivv~tpe---------~~D~y~~~k~~~~~~~~~~~~~k  146 (148)
T cd03114          87 LDAAGFDVIIVET-VGVGQSEVDIASMAD-TTVVVMAPG---------AGDDIQAIKAGIMEIADIVVVNK  146 (148)
T ss_pred             HHhcCCCEEEEEC-CccChhhhhHHHhCC-EEEEEECCC---------chhHHHHhhhhHhhhcCEEEEeC
Confidence            3346899999999 443333334443332 255666643         35788899999999888888884

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=95.45  E-value=0.056  Score=54.13  Aligned_cols=35  Identities=31%  Similarity=0.510  Sum_probs=30.7

Q ss_pred             CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.++|.|+   |-.|||||+.-|+..|...|++|.+.
T Consensus       102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI  139 (387)
T TIGR03453       102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI  139 (387)
T ss_pred             CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            456789888   66899999999999999999999876

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.23  E-value=0.22  Score=47.27  Aligned_cols=50  Identities=30%  Similarity=0.334  Sum_probs=37.9

Q ss_pred             HHHHHHHHhCCCCCCCc-EEEEeCC--CChHHHHHHHHHHHHHcCCc--eEeeeC
Q 017061           79 RMNRLMDRLGNPHSKFK-TVHIAGT--KGKGSTAAFLSSILRAEGYS--VGCYTS  128 (378)
Q Consensus        79 r~~~ll~~lg~p~~~~~-~I~VTGT--nGKtSTt~~l~~iL~~~G~~--vg~~tS  128 (378)
                      ....+++.|+....+.| +|+|+|+  .||+||+..+..+|...+-.  |-++++
T Consensus        66 ~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpm  120 (283)
T COG1072          66 LFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTM  120 (283)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEec
Confidence            34566667765544444 8999998  89999999999999998765  555544

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=94.24  E-value=0.1  Score=47.14  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=34.2

Q ss_pred             HHHHHHHHhCCCCCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           79 RMNRLMDRLGNPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        79 r~~~ll~~lg~p~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +++.-|..-   ..+.++|.|+++   .||||++..|+..|...|++|.+.
T Consensus         5 ~l~~~l~~~---~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI   52 (204)
T TIGR01007         5 AIRTNIQFS---GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI   52 (204)
T ss_pred             HHHHHHhhh---cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            344444433   345788999965   689999999999999999999764

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=94.18  E-value=0.063  Score=49.91  Aligned_cols=37  Identities=32%  Similarity=0.452  Sum_probs=34.7

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCccc
Q 017061           96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIK  132 (378)
Q Consensus        96 ~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~  132 (378)
                      +|+|+|.-||||+..-|+.-|+..|++|.+.||-|+.
T Consensus         1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~   37 (232)
T TIGR03172         1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMF   37 (232)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCcccc
Confidence            5899999999999999999999999999999998874

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=94.16  E-value=1.3  Score=43.34  Aligned_cols=35  Identities=26%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      +..+|++.|-  .|||||+..|+..|...|.+|.+.+
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~  149 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA  149 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            3468888886  5799999999999999999998754

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=93.75  E-value=4.3  Score=38.68  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      +.++|.++|.  .|||||++-|+..|...|++|++.+
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~  107 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA  107 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            4568888886  6899999999999999999998854

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=93.70  E-value=0.22  Score=45.27  Aligned_cols=49  Identities=18%  Similarity=0.102  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhC---CCCCCCcEEEEe---CCCChHHHHHHHHHHHHH-cCCceEee
Q 017061           78 GRMNRLMDRLG---NPHSKFKTVHIA---GTKGKGSTAAFLSSILRA-EGYSVGCY  126 (378)
Q Consensus        78 ~r~~~ll~~lg---~p~~~~~~I~VT---GTnGKtSTt~~l~~iL~~-~G~~vg~~  126 (378)
                      .+++.-|....   ++....++|+|+   |-.||||++..|++.|.. .|++|.+.
T Consensus        16 ~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv   71 (207)
T TIGR03018        16 RKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI   71 (207)
T ss_pred             HHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence            34444444333   344567899999   568999999999999986 69999774

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=93.54  E-value=4.1  Score=39.59  Aligned_cols=157  Identities=18%  Similarity=0.126  Sum_probs=84.1

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcc--cccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 017061           92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI--KTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA  166 (378)
Q Consensus        92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l--~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~  166 (378)
                      .+.++|.|-||   -||=||+..|...+++.|+++++..+-..  .-..+.+.++  -.   ..+|...      +++. 
T Consensus       146 ~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~gvvvd--av---~~DfaAG------ave~-  213 (339)
T COG3367         146 VDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILIADDGVVVD--AV---VMDFAAG------AVES-  213 (339)
T ss_pred             cCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEEecCceEec--ch---hHHHHHH------HHHH-
Confidence            45789999999   79999999999999999999998755331  1122223333  11   2222221      1111 


Q ss_pred             HhhcCCCcCHHHHHHHHHHHHHH-hcCCCEEEEee--CCCCCc--ccccccccCCCcEEEEccCChhhHhhcC-----CC
Q 017061          167 IRLENGCITHFEVLTAMAFALFA-QNHVDIAVIEA--GLGGAR--DATNIISSSGLAASVITTIGEEHTAALG-----GS  236 (378)
Q Consensus       167 ~~~~~~~~t~fE~~t~~a~~~f~-~~~~d~~VlEv--g~gg~~--D~t~~~~~~~p~vaVITNI~~DHld~lG-----~t  236 (378)
                                        ..+-. ++++|+.++|-  |+-+..  =.+.++....|+..|+- =.++|.-+.|     +.
T Consensus       214 ------------------~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~-H~P~r~~~~g~P~~ip~  274 (339)
T COG3367         214 ------------------AVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLC-HDPNRKYRDGFPEPIPP  274 (339)
T ss_pred             ------------------HHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEE-ecCCCccccCCCCcCCC
Confidence                              12223 35899999996  211111  12344555567754443 3555544332     35


Q ss_pred             HHHHHHHHhccccCCCe-EEEcC--CCChhHHHHHHHHHHhhCCeE
Q 017061          237 LETIAMAKSGIIKYGRP-LVLGG--PFLPHIEHILRDEASLMCSQV  279 (378)
Q Consensus       237 le~ia~~Ka~Iik~~~~-~V~~~--~d~~~~~~vl~~~a~~~~~~~  279 (378)
                      ++++..--.-+-..... +.+|.  -|++++++...+...+.+.|+
T Consensus       275 leevi~l~e~l~~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~  320 (339)
T COG3367         275 LEEVIALYELLSNAKVVGIALNTRNLDEEEARELCAKLEAEFGLPV  320 (339)
T ss_pred             HHHHHHHHHHccCCcEEEEEecccccChHHHHHHHHHHhhccCCcc
Confidence            67665543333222222 33441  244555555555555555443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.40  E-value=1.3  Score=44.69  Aligned_cols=35  Identities=26%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      .++|++.|-  .|||||...|+..|...|++|++++.
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a  277 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT  277 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence            357888875  68999999999999999999998654

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=93.17  E-value=0.13  Score=45.02  Aligned_cols=37  Identities=32%  Similarity=0.462  Sum_probs=32.5

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH  130 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~  130 (378)
                      .++++|+|.  .||||...-|-..|++.||+|+..-..|
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h   40 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH   40 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence            479999997  7999999999999999999999875443

>PRK07667 uridine kinase; Provisional

Probab=93.16  E-value=0.24  Score=44.53  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=36.8

Q ss_pred             hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061           77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP  129 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp  129 (378)
                      ++.+-.++....   .+..+|+|+|-  .||||++..|...|...|.++.++...
T Consensus         3 ~~~~~~~~~~~~---~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D   54 (193)
T PRK07667          3 TNELINIMKKHK---ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID   54 (193)
T ss_pred             HHHHHHHHHhcC---CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            344444443332   34479999995  899999999999999999988776544

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=92.84  E-value=2.6  Score=42.56  Aligned_cols=30  Identities=40%  Similarity=0.424  Sum_probs=25.3

Q ss_pred             EEEEeCC---CChHHHHHHHHHHHHHcCCceEe
Q 017061           96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGC  125 (378)
Q Consensus        96 ~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~  125 (378)
                      -|.|+||   .||||+|.-|...|++.|++|--
T Consensus         2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqp   34 (451)
T COG1797           2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQP   34 (451)
T ss_pred             ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence            4677887   79999999999999999877743

>PRK15453 phosphoribulokinase; Provisional

Probab=92.49  E-value=0.21  Score=47.85  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.++|+|||+  .||||++..++.+|...|.++.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi   39 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVV   39 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEE
Confidence            45689999998  789999999999999877766554

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=92.42  E-value=4  Score=36.88  Aligned_cols=160  Identities=16%  Similarity=0.110  Sum_probs=79.7

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC-
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN-  171 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~-  171 (378)
                      ++|.+.|-  .|||||++=|++.+...|.+|++.+.-.   |    |++             ++++++...+.+.-.-. 
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~---~----R~g-------------a~eQL~~~a~~l~vp~~~   61 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT---Y----RIG-------------AVEQLKTYAEILGVPFYV   61 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST---S----STH-------------HHHHHHHHHHHHTEEEEE
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC---C----Ccc-------------HHHHHHHHHHHhccccch
Confidence            35556654  6899999999999998899999875421   1    111             33444444444331100 


Q ss_pred             --CCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCCccc------ccccccCC-CcEEEEccCChhhHhhcCCCHHHHH
Q 017061          172 --GCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGARDA------TNIISSSG-LAASVITTIGEEHTAALGGSLETIA  241 (378)
Q Consensus       172 --~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~D~------t~~~~~~~-p~vaVITNI~~DHld~lG~tle~ia  241 (378)
                        .....-++. .-++..+..+++|++++-+ |... .|.      ..++.... .++-++.+-....-     .++ .+
T Consensus        62 ~~~~~~~~~~~-~~~l~~~~~~~~D~vlIDT~Gr~~-~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-----~~~-~~  133 (196)
T PF00448_consen   62 ARTESDPAEIA-REALEKFRKKGYDLVLIDTAGRSP-RDEELLEELKKLLEALNPDEVHLVLSATMGQE-----DLE-QA  133 (196)
T ss_dssp             SSTTSCHHHHH-HHHHHHHHHTTSSEEEEEE-SSSS-THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-----HHH-HH
T ss_pred             hhcchhhHHHH-HHHHHHHhhcCCCEEEEecCCcch-hhHHHHHHHHHHhhhcCCccceEEEecccChH-----HHH-HH
Confidence              000111111 1134456678899999999 4333 221      12222111 23555555444332     233 23


Q ss_pred             HHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEec
Q 017061          242 MAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAY  283 (378)
Q Consensus       242 ~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~  283 (378)
                      ..+...+...+.+++- -|.-.....+-..+.+.+.|+.+++
T Consensus       134 ~~~~~~~~~~~lIlTK-lDet~~~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  134 LAFYEAFGIDGLILTK-LDETARLGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             HHHHHHSSTCEEEEES-TTSSSTTHHHHHHHHHHTSEEEEEE
T ss_pred             HHHhhcccCceEEEEe-ecCCCCcccceeHHHHhCCCeEEEE
Confidence            3343444455555554 4442222233445556688888765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=91.96  E-value=0.24  Score=46.57  Aligned_cols=32  Identities=31%  Similarity=0.334  Sum_probs=27.3

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|.  |-.||||++.-|+..|.+.|+||.+.
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli   35 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV   35 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            345555  67899999999999999999999875

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=91.91  E-value=4.9  Score=40.89  Aligned_cols=34  Identities=26%  Similarity=0.190  Sum_probs=27.8

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHH--HcCCceEeeeC
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILR--AEGYSVGCYTS  128 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~--~~G~~vg~~tS  128 (378)
                      ++|.+.|-  .|||||+..|+..+.  ..|++|++++.
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~  259 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL  259 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            57888885  689999999998886  56899998754

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=91.86  E-value=0.44  Score=46.61  Aligned_cols=48  Identities=27%  Similarity=0.443  Sum_probs=37.0

Q ss_pred             HHHHHHHhCCC---CCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeee
Q 017061           80 MNRLMDRLGNP---HSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        80 ~~~ll~~lg~p---~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      +++.+=+.|..   ....|+|.|    .|-.|||.++.+|+..|++.|++|++.+
T Consensus        32 ~R~~~y~~~~~~~~~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils   86 (325)
T PRK00652         32 LRRLLYRLGLKKPYRAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS   86 (325)
T ss_pred             HHHHHHHhCCCcccCCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence            44444444432   235678998    7999999999999999999999999864

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=91.64  E-value=0.76  Score=38.76  Aligned_cols=30  Identities=33%  Similarity=0.434  Sum_probs=25.5

Q ss_pred             EEEeCC-CChHHHHHHHHHHHHHcCCceEee
Q 017061           97 VHIAGT-KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        97 I~VTGT-nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +-|||+ .|||+++.-+...|++.|++|+.|
T Consensus         3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~   33 (134)
T cd03109           3 GFGTGTDIGKTVATAILARALKEKGYRVAPL   33 (134)
T ss_pred             EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEE
Confidence            345554 799999999999999999999875

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=91.52  E-value=0.29  Score=41.78  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=26.3

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      |+|+|.|-  .||||.+..|-..|.+.|++|+.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i   34 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI   34 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence            57899996  799999999999999999999965

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=91.34  E-value=0.33  Score=37.08  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=26.4

Q ss_pred             EEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      |.|+|.  .||||++..++..|.+.|++|.++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            566665  6999999999999999999997753

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=91.27  E-value=2.7  Score=40.59  Aligned_cols=159  Identities=21%  Similarity=0.167  Sum_probs=75.7

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcc--cccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI--KTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAI  167 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l--~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~  167 (378)
                      +.++|++-||   -||=||+.+|...|++.|+++++..|-..  .--..       |.++..                  
T Consensus       111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~-------Gv~iDa------------------  165 (301)
T PF07755_consen  111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGY-------GVPIDA------------------  165 (301)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSE-------C--GGG------------------
T ss_pred             CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecC-------Ceeccc------------------
Confidence            6689999998   79999999999999999999998765431  10222       222210                  


Q ss_pred             hhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee--CCCCCcc---cccccccCCCcEEEE-ccCChhhHhhcC----CCH
Q 017061          168 RLENGCITHFEVLTAMAFALFAQNHVDIAVIEA--GLGGARD---ATNIISSSGLAASVI-TTIGEEHTAALG----GSL  237 (378)
Q Consensus       168 ~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv--g~gg~~D---~t~~~~~~~p~vaVI-TNI~~DHld~lG----~tl  237 (378)
                           -++.|=...+-.+..-..++.||.|+|-  ++....-   ...++...+|+.-|+ ..-++-|++-|-    .++
T Consensus       166 -----v~~DFvaGavE~~v~~~~~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l  240 (301)
T PF07755_consen  166 -----VPSDFVAGAVEALVPEAAEEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPL  240 (301)
T ss_dssp             -----SBGGGHHHHHHHHHHHHCCC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---H
T ss_pred             -----hhhhhHHHHHHHHHHhhCcCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCH
Confidence                 0111111111111222232449999996  2222211   123444456775444 344445554321    466


Q ss_pred             HHHHHHHhccccC--CCeEE---EcC--CCChhHHHHHHHHHHhhCCeEEE
Q 017061          238 ETIAMAKSGIIKY--GRPLV---LGG--PFLPHIEHILRDEASLMCSQVVS  281 (378)
Q Consensus       238 e~ia~~Ka~Iik~--~~~~V---~~~--~d~~~~~~vl~~~a~~~~~~~~~  281 (378)
                      ++..+.-..+-..  ...+|   +|.  .+++++...+++..++.+.|+..
T Consensus       241 ~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e~~~~~~~~~~e~glPv~D  291 (301)
T PF07755_consen  241 EEEIELIEALAGTKPPAKVVGISLNTSGLSEEEAKAAIERIEEELGLPVTD  291 (301)
T ss_dssp             HHHHHHHHHCCCGC---EEEEEECC-TTS-HHHHHHHHHHHHHHH-S-EE-
T ss_pred             HHHHHHHHHhhccCCCccEEEEEEECCCCCHHHHHHHHHHHHHHHCCCeee
Confidence            6666644444332  22222   341  23455667777788888887763

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=91.25  E-value=2.5  Score=43.63  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=23.9

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHc
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAE  119 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~  119 (378)
                      +.+.|-||||   .|||+++..|.+.|+..
T Consensus       237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~  266 (476)
T PRK06278        237 KPKGIILLATGSESGKTFLTTSIAGKLRGK  266 (476)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            4677999998   79999999999999974

>PRK06761 hypothetical protein; Provisional

Probab=91.03  E-value=7  Score=37.51  Aligned_cols=66  Identities=23%  Similarity=0.322  Sum_probs=45.6

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHH
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLD  164 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~  164 (378)
                      ++|.|+|-  .||||++..|+.-|...|+++..+.-+......+  ...  +..++++++...+.......+
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d--~~~--~~~~~~eer~~~l~~~~~f~~   71 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPAD--YDG--VACFTKEEFDRLLSNYPDFKE   71 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchh--hcc--ccCCCHHHHHHHHHhhhHHHH
Confidence            57899984  8999999999999998899887764432111111  112  456788888888777666443

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=90.96  E-value=0.33  Score=45.94  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=28.3

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+  |-.|||||+.-|+..|.+.|+||.+.
T Consensus         2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv   35 (273)
T PRK13232          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV   35 (273)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence            567777  45899999999999999999999886

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=90.92  E-value=1.5  Score=44.60  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=27.2

Q ss_pred             EEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .|-||||   .|||+++..|.+.|++.|++|..|
T Consensus         3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~   36 (433)
T PRK13896          3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPA   36 (433)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEE
Confidence            4667776   799999999999999999999765

>COG2403 Predicted GTPase [General function prediction only]

Probab=90.70  E-value=0.33  Score=47.78  Aligned_cols=39  Identities=26%  Similarity=0.518  Sum_probs=34.9

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcc
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI  131 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l  131 (378)
                      ..|+|.|+||   .|||+++++++.+|++.||++....=|-+
T Consensus       125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmi  166 (449)
T COG2403         125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMI  166 (449)
T ss_pred             cCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCce
Confidence            4589999998   89999999999999999999998877754

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]

Probab=90.65  E-value=0.61  Score=45.51  Aligned_cols=51  Identities=22%  Similarity=0.421  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhCCCCCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           78 GRMNRLMDRLGNPHSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        78 ~r~~~ll~~lg~p~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      ...++.+.+.|...-..|+|.|    .|-||||-++-+|+..|++.|+++|.++=
T Consensus        31 ~~~r~~~~~~g~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSR   85 (336)
T COG1663          31 AGLRRKLAKKGSYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSR   85 (336)
T ss_pred             HHHHHHHhccccccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEec
Confidence            4466666666633456788876    59999999999999999999999998753

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=90.39  E-value=0.73  Score=43.58  Aligned_cols=50  Identities=16%  Similarity=0.076  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHhCC--CCCCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           77 LGRMNRLMDRLGN--PHSKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        77 L~r~~~ll~~lg~--p~~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .|.++.+...+..  .....++|.||   |--||||++..++..|.+.|++|.++
T Consensus        84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI  138 (274)
T TIGR03029        84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI  138 (274)
T ss_pred             HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            3556666666543  34567899999   55899999999999999999999774

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>COG4240 Predicted kinase [General function prediction only]

Probab=90.36  E-value=0.62  Score=43.20  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcC-CceEee
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEG-YSVGCY  126 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G-~~vg~~  126 (378)
                      .-+++|.|.  .||||++..|..+|.+.| ++|+.+
T Consensus        50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l   85 (300)
T COG4240          50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL   85 (300)
T ss_pred             ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence            358999997  899999999999999988 688764

>PHA02518 ParA-like protein; Provisional

Probab=90.23  E-value=0.46  Score=42.66  Aligned_cols=31  Identities=32%  Similarity=0.377  Sum_probs=26.5

Q ss_pred             EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|+   |-.||||++..|+..|.+.|++|.+.
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli   35 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV   35 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            45555   66889999999999999999999874

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=90.01  E-value=0.48  Score=43.06  Aligned_cols=31  Identities=32%  Similarity=0.297  Sum_probs=27.1

Q ss_pred             EEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|+|  -.||||++..|+..|.+.|+||.+.
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli   34 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV   34 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence            577775  5799999999999999999999876

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=90.01  E-value=0.51  Score=46.97  Aligned_cols=39  Identities=23%  Similarity=0.282  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           90 PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        90 p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      +..+.++|+|+|.  .||||...-|-..|++.|++|+..-.
T Consensus       201 ~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh  241 (366)
T PRK14489        201 TTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH  241 (366)
T ss_pred             cCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence            3346789999995  89999999999999999999998643

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=89.90  E-value=0.48  Score=43.82  Aligned_cols=33  Identities=39%  Similarity=0.643  Sum_probs=30.0

Q ss_pred             CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.+-||||   -|||.+++.|.+.|+..|++|+.|
T Consensus         2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~   37 (223)
T COG0132           2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY   37 (223)
T ss_pred             CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence            367899999   699999999999999999999876

>PRK05439 pantothenate kinase; Provisional

Probab=89.86  E-value=0.93  Score=44.08  Aligned_cols=41  Identities=32%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             hCCCCC-CCcEEEEeCC--CChHHHHHHHHHHHHHc--CCceEeee
Q 017061           87 LGNPHS-KFKTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCYT  127 (378)
Q Consensus        87 lg~p~~-~~~~I~VTGT--nGKtSTt~~l~~iL~~~--G~~vg~~t  127 (378)
                      |+.+.. ..-+|+|||+  .||||++..|..+|...  |.+|.+.+
T Consensus        78 l~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~  123 (311)
T PRK05439         78 LGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT  123 (311)
T ss_pred             hcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence            453333 3348999997  88999999999999864  66776653

>PRK14974 cell division protein FtsY; Provisional

Probab=89.79  E-value=6.4  Score=38.72  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ..+|.++|.  .|||||++.++..|...|++|++.+
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~  175 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA  175 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            468999997  6799999999999999999998754

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=89.55  E-value=0.52  Score=44.63  Aligned_cols=32  Identities=28%  Similarity=0.223  Sum_probs=27.8

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+  |-.|||||+.-|+..|.+.|+||.+.
T Consensus         2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI   35 (274)
T PRK13235          2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV   35 (274)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence            467777  45789999999999999999999886

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=89.50  E-value=0.73  Score=40.45  Aligned_cols=39  Identities=28%  Similarity=0.595  Sum_probs=33.8

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccc
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKT  133 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~  133 (378)
                      --|+|||-  .||||.+.-|+..|+..||+||=|-+|.+..
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~   46 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE   46 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence            46999996  8899999999999999999998887776543

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=89.37  E-value=0.45  Score=43.79  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=28.9

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.||   |--|||||++-|...|...|+||.+.
T Consensus         3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li   37 (272)
T COG2894           3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI   37 (272)
T ss_pred             eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence            578888   67899999999999999999999875

>PRK10037 cell division protein; Provisional

Probab=89.23  E-value=0.58  Score=43.72  Aligned_cols=32  Identities=25%  Similarity=0.198  Sum_probs=28.1

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+   |-.|||||+.-|+..|.+.|+||.+.
T Consensus         2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI   36 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI   36 (250)
T ss_pred             cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence            467777   56899999999999999999999876

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=89.05  E-value=0.6  Score=41.89  Aligned_cols=32  Identities=38%  Similarity=0.582  Sum_probs=28.3

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +.|-|+||   .|||+++..|.+.|++.|.+|+.|
T Consensus         1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~   35 (199)
T PF13500_consen    1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYF   35 (199)
T ss_dssp             -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence            35778888   799999999999999999999976

...

>PRK06696 uridine kinase; Validated

Probab=88.98  E-value=1.1  Score=41.26  Aligned_cols=48  Identities=21%  Similarity=0.209  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhCC-CCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061           78 GRMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC  125 (378)
Q Consensus        78 ~r~~~ll~~lg~-p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~  125 (378)
                      +.+.++.+.+.. ...+..+|+|+|-  .||||.+..|+..|.+.|.++..
T Consensus         5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~   55 (223)
T PRK06696          5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR   55 (223)
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            344555555432 1234569999984  89999999999999998877654

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=88.94  E-value=0.62  Score=44.27  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=27.8

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+  |-.|||||+.-|+..|.+.|+||.+.
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli   35 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV   35 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence            466676  56899999999999999999999776

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=88.93  E-value=0.64  Score=42.89  Aligned_cols=32  Identities=34%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             cEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.|++   -.||||++.-|+..|.+.|+||.+.
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli   36 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI   36 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence            5677764   6899999999999999999999875

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=88.82  E-value=0.57  Score=44.54  Aligned_cols=32  Identities=16%  Similarity=0.325  Sum_probs=28.1

Q ss_pred             EEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      +|+|||.  .||||++..+.++|...|.++.+..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~   34 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE   34 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence            5899997  7899999999999999998887654

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=88.80  E-value=0.65  Score=43.13  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=27.8

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.|+   |-.|||||+..|+..|.+.|++|.+.
T Consensus         2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli   36 (231)
T PRK13849          2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF   36 (231)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence            567777   55789999999999999999999874

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=88.62  E-value=0.77  Score=40.11  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ++|+|+|.  .||||.+..|...|...|++|+.+-
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK   36 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK   36 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            68999994  8999999999999999999998853

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=88.54  E-value=0.66  Score=43.71  Aligned_cols=32  Identities=25%  Similarity=0.228  Sum_probs=27.7

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+  |-.|||||+.-|++.|.+.|+||.+.
T Consensus         3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli   36 (270)
T PRK13185          3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI   36 (270)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            466666  56899999999999999999999875

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=88.49  E-value=3.6  Score=44.43  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=28.3

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      +.|-|+||   .|||+++.-|.+.|++.|++||.|-
T Consensus         3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK   38 (684)
T PRK05632          3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK   38 (684)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence            34666665   8999999999999999999999874

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=88.46  E-value=0.68  Score=43.62  Aligned_cols=31  Identities=29%  Similarity=0.291  Sum_probs=26.6

Q ss_pred             EEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|+  |-.||||++.-|++.|.+.|+||.+.
T Consensus         2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli   34 (267)
T cd02032           2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI   34 (267)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            45666  56899999999999999999999775

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=88.40  E-value=0.76  Score=42.69  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061           94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP  129 (378)
Q Consensus        94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp  129 (378)
                      +++|.|+|  -.||||++.-|...|+..|++|+.+-..
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~   38 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHT   38 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            36899999  5899999999999999999999997543

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=88.40  E-value=0.57  Score=42.00  Aligned_cols=27  Identities=37%  Similarity=0.503  Sum_probs=24.7

Q ss_pred             EEEEeC--CCChHHHHHHHHHHHHHcCCc
Q 017061           96 TVHIAG--TKGKGSTAAFLSSILRAEGYS  122 (378)
Q Consensus        96 ~I~VTG--TnGKtSTt~~l~~iL~~~G~~  122 (378)
                      +|+|+|  ..||||++..|..+|.+.|.+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            689998  489999999999999998877

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR01287 nifH nitrogenase iron protein

Probab=88.30  E-value=0.68  Score=43.79  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=27.2

Q ss_pred             EEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|.  |-.||||+|.-|+..|.+.|++|.+.
T Consensus         2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli   34 (275)
T TIGR01287         2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV   34 (275)
T ss_pred             eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            56666  46899999999999999999999886

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=88.25  E-value=0.7  Score=40.16  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=27.5

Q ss_pred             EEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      +|+|+|.  .||||++..|...|+..|++|+.+-
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK   34 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK   34 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4778884  7899999999999999999998864

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=88.22  E-value=0.7  Score=42.91  Aligned_cols=32  Identities=28%  Similarity=0.275  Sum_probs=28.1

Q ss_pred             cEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|++   -.||||++..++..|.+.|++|.++
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli   36 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI   36 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence            5777875   5889999999999999999999886

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=88.18  E-value=0.73  Score=44.43  Aligned_cols=31  Identities=29%  Similarity=0.289  Sum_probs=26.7

Q ss_pred             EEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|.  |--|||||+..|+..|.+.|+||.+.
T Consensus         2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI   34 (296)
T TIGR02016         2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL   34 (296)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            45555  56899999999999999999999775

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=87.88  E-value=0.74  Score=45.90  Aligned_cols=33  Identities=39%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             CcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .++|+|+   |-.|||||+.-|+..|.+.|+||++.
T Consensus       107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI  142 (369)
T PRK11670        107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL  142 (369)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4689998   56899999999999999999999886

>PRK13236 nitrogenase reductase; Reviewed

Probab=87.65  E-value=0.9  Score=43.77  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             CCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .++++|.|.|  -.|||||+.-|+..|.+.|+||.++
T Consensus         4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli   40 (296)
T PRK13236          4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV   40 (296)
T ss_pred             cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4567788874  5899999999999999999999987

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=87.64  E-value=0.81  Score=40.62  Aligned_cols=32  Identities=38%  Similarity=0.405  Sum_probs=27.7

Q ss_pred             EEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      +|+|+|.  .||||.+..|...|...|.++..+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~   34 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS   34 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            4889986  8999999999999999898887653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=87.60  E-value=1.8  Score=42.07  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=40.0

Q ss_pred             ChHHHHHHHHHhC-CCCCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           76 DLGRMNRLMDRLG-NPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        76 ~L~r~~~ll~~lg-~p~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +-+.+..++..+. .+..+.++|+|+|.   -||||++.-|+..|.+.|++|.+.
T Consensus        74 ~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv  128 (322)
T TIGR03815        74 AEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV  128 (322)
T ss_pred             CHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence            4455566666664 44556789999865   789999999999999999999875

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=87.58  E-value=9.3  Score=34.82  Aligned_cols=28  Identities=32%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             CCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061          101 GTKGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus       101 GTnGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      |-.||||++..++..+.+.|++|.++..
T Consensus         8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~~   35 (217)
T cd02035           8 GGVGKTTIAAATAVRLAEEGKKVLLVST   35 (217)
T ss_pred             CCchHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            3479999999999999999999988743

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=87.39  E-value=1.8  Score=42.11  Aligned_cols=35  Identities=26%  Similarity=0.525  Sum_probs=31.3

Q ss_pred             CCcEEEEe----CCCChHHHHHHHHHHHHHcCCceEeee
Q 017061           93 KFKTVHIA----GTKGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VT----GTnGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ..|+|.|-    |-.|||.++.+|+..|++.|+++++.+
T Consensus        27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS   65 (311)
T TIGR00682        27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS   65 (311)
T ss_pred             CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence            56788884    889999999999999999999999865

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=87.35  E-value=0.94  Score=43.61  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             CCcEEEEe--CCCChHHHHHHHHHHHHHcCCceEee-eCCc
Q 017061           93 KFKTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY-TSPH  130 (378)
Q Consensus        93 ~~~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~-tSp~  130 (378)
                      ++++|+|.  |--|||||+.-|+..|.+.|+||.++ .-|+
T Consensus         3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q   43 (295)
T PRK13234          3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK   43 (295)
T ss_pred             cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence            45677776  46889999999999999999999887 4443

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=87.32  E-value=1.1  Score=43.93  Aligned_cols=35  Identities=31%  Similarity=0.279  Sum_probs=31.2

Q ss_pred             CCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++.++|.|+|  .-||||++..|+..|.+.|++|++.
T Consensus        29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli   65 (329)
T cd02033          29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI   65 (329)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4678898885  6899999999999999999999886

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=87.19  E-value=0.63  Score=41.23  Aligned_cols=26  Identities=35%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceE
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVG  124 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg  124 (378)
                      +.|+||||  .||||+|..|+    ..|+++.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~i   28 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR----ELGYKVI   28 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence            36999999  78999998887    4467663

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.80  E-value=2.8  Score=41.81  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ..+|-+.|-  .||||||.-++..++..||++++..
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc  136 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC  136 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence            346777774  5799999999999999999999854

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=86.66  E-value=8.6  Score=38.98  Aligned_cols=85  Identities=18%  Similarity=0.263  Sum_probs=52.5

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh---
Q 017061           95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL---  169 (378)
Q Consensus        95 ~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~---  169 (378)
                      .+|-..|  -.||||||.=|+.-|+..|++|++...-.             =.|       .++++++...++..-.   
T Consensus       101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~-------------~Rp-------AA~eQL~~La~q~~v~~f~  160 (451)
T COG0541         101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT-------------YRP-------AAIEQLKQLAEQVGVPFFG  160 (451)
T ss_pred             eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc-------------CCh-------HHHHHHHHHHHHcCCceec
Confidence            4677777  38999999999999999999999854311             111       1334444443333221   


Q ss_pred             cCCCcCHHHHHHHHHHHHHHhcCCCEEEEee
Q 017061          170 ENGCITHFEVLTAMAFALFAQNHVDIAVIEA  200 (378)
Q Consensus       170 ~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv  200 (378)
                      .....+..|+ .--|+..+....+|++++-+
T Consensus       161 ~~~~~~Pv~I-ak~al~~ak~~~~DvvIvDT  190 (451)
T COG0541         161 SGTEKDPVEI-AKAALEKAKEEGYDVVIVDT  190 (451)
T ss_pred             CCCCCCHHHH-HHHHHHHHHHcCCCEEEEeC
Confidence            1112334443 23466677778888888777

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=86.62  E-value=1.1  Score=41.48  Aligned_cols=31  Identities=32%  Similarity=0.330  Sum_probs=26.9

Q ss_pred             EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|+   |-.||||++.-|+..|.+.|++|.++
T Consensus         2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli   35 (251)
T TIGR01969         2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL   35 (251)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            55565   56899999999999999999999886

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=86.59  E-value=1  Score=41.62  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=27.6

Q ss_pred             EEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .|-||||   .|||+++..|.+.|++.|++|+.|
T Consensus         4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~   37 (231)
T PRK12374          4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY   37 (231)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            4667766   899999999999999999999986

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=86.57  E-value=0.98  Score=42.72  Aligned_cols=32  Identities=19%  Similarity=0.161  Sum_probs=27.2

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHH-cCCceEee
Q 017061           95 KTVHIA--GTKGKGSTAAFLSSILRA-EGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT--GTnGKtSTt~~l~~iL~~-~G~~vg~~  126 (378)
                      ++|+|+  |-.|||||+.-|+..|.+ .|+||.++
T Consensus         3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli   37 (275)
T PRK13233          3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH   37 (275)
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence            567777  567899999999999997 69999886

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=86.52  E-value=0.92  Score=42.61  Aligned_cols=31  Identities=29%  Similarity=0.391  Sum_probs=25.1

Q ss_pred             EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|.|+   |-.|||||+.=|+..|...|++||+.
T Consensus         2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l   35 (261)
T PF09140_consen    2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL   35 (261)
T ss_dssp             EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred             EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            45665   67899999999999999999999985

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>PRK00784 cobyric acid synthase; Provisional

Probab=86.22  E-value=0.87  Score=47.14  Aligned_cols=33  Identities=36%  Similarity=0.555  Sum_probs=29.4

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      +.|-||||   .|||+++..|...|++.|++|+.|-
T Consensus         3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K   38 (488)
T PRK00784          3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK   38 (488)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence            46888888   8999999999999999999998763

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=86.18  E-value=1  Score=41.13  Aligned_cols=30  Identities=43%  Similarity=0.675  Sum_probs=26.3

Q ss_pred             EEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        97 I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      |-||||   .|||+++..|.+.|++.|++|+.|
T Consensus         2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~   34 (222)
T PRK00090          2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGY   34 (222)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEE
Confidence            456665   799999999999999999999876

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=86.12  E-value=0.89  Score=40.03  Aligned_cols=30  Identities=30%  Similarity=0.223  Sum_probs=25.0

Q ss_pred             EEEeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061           97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        97 I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.-|-.||||++..|+..|...|++|.++
T Consensus         4 ~~~kGG~GKTt~a~~la~~la~~g~~Vlli   33 (195)
T PF01656_consen    4 TSGKGGVGKTTIAANLAQALARKGKKVLLI   33 (195)
T ss_dssp             EESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred             EcCCCCccHHHHHHHHHhcccccccccccc
Confidence            344467899999999999999999999885

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=85.80  E-value=11  Score=36.86  Aligned_cols=107  Identities=17%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             cEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCcccccce-----------EEeeCCCCcccCHH-HHHHHHHHHH
Q 017061           95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE-----------RMNVGRLNRPVSAK-ALNCLFHKIK  160 (378)
Q Consensus        95 ~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~e-----------ri~in~~G~~is~~-~~~~~~~~~~  160 (378)
                      ++|-++|  --||||+++.++.-|.+.|.+|-+.++.--.+...           +|.-|-.+..++.. .+.+..+++.
T Consensus         3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~   82 (322)
T COG0003           3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVK   82 (322)
T ss_pred             EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHH
Confidence            5667774  69999999999999999998887775432222222           12212123334333 3444445555


Q ss_pred             HHHHHHHhhc----------CCCcCHHHHHHHHHHHHH-HhcCCCEEEEeeC
Q 017061          161 GVLDEAIRLE----------NGCITHFEVLTAMAFALF-AQNHVDIAVIEAG  201 (378)
Q Consensus       161 ~~~~~~~~~~----------~~~~t~fE~~t~~a~~~f-~~~~~d~~VlEvg  201 (378)
                      ..........          ...|..=|+....++.-+ .....|++|+-+-
T Consensus        83 ~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~Dta  134 (322)
T COG0003          83 DYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTA  134 (322)
T ss_pred             HHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence            4433332211          124666666666555543 4566899999984

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=85.70  E-value=2.1  Score=41.21  Aligned_cols=40  Identities=30%  Similarity=0.312  Sum_probs=27.9

Q ss_pred             hCCCC-CCCcEEEEeCC--CChHHHHHHHHHHHHHc--CCceEee
Q 017061           87 LGNPH-SKFKTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCY  126 (378)
Q Consensus        87 lg~p~-~~~~~I~VTGT--nGKtSTt~~l~~iL~~~--G~~vg~~  126 (378)
                      ++.+. +..-+|+|+|.  .||||++.+|..+|...  +-+|.++
T Consensus        54 ~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi   98 (290)
T TIGR00554        54 LGTNGAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELI   98 (290)
T ss_pred             HhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEE
Confidence            44443 23458999997  58999999999999853  2245443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>CHL00175 minD septum-site determining protein; Validated

Probab=85.25  E-value=1.4  Score=41.84  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .++|.|++.   .||||++.-|+..|.+.|++|.++
T Consensus        15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli   50 (281)
T CHL00175         15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI   50 (281)
T ss_pred             ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence            468888864   799999999999999999999886

>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]

Probab=85.18  E-value=1.2  Score=42.29  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=28.5

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+|.|+   |--|||||+..|+..|...|++||++
T Consensus        48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglL   82 (300)
T KOG3022|consen   48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLL   82 (300)
T ss_pred             eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEE
Confidence            367776   77999999999999999999999986

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=84.90  E-value=1.1  Score=42.07  Aligned_cols=31  Identities=32%  Similarity=0.196  Sum_probs=26.1

Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++++.|-.||||+++-|++.|...|.+|-..
T Consensus         6 i~s~kGGvG~TTltAnLA~aL~~~G~~VlaI   36 (243)
T PF06564_consen    6 IVSPKGGVGKTTLTANLAWALARLGESVLAI   36 (243)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4455566899999999999999999999664

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional

Probab=84.87  E-value=2.6  Score=41.53  Aligned_cols=49  Identities=27%  Similarity=0.333  Sum_probs=37.1

Q ss_pred             HHHHHHHHhCC---CCCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeee
Q 017061           79 RMNRLMDRLGN---PHSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        79 r~~~ll~~lg~---p~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ++++.+-+.|.   .....|+|.|    .|-.|||-++.+|+..|++.|++|++.+
T Consensus        38 ~lR~~~y~~g~~~~~~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS   93 (338)
T PRK01906         38 ALRRAAYARGWKKSVRLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS   93 (338)
T ss_pred             HHHHHHHhhcccccccCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence            34555544442   2235678887    4889999999999999999999999865

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=84.79  E-value=0.91  Score=39.37  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             CCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 017061           90 PHSKFKTVHIAGT--KGKGSTAAFLSSIL  116 (378)
Q Consensus        90 p~~~~~~I~VTGT--nGKtSTt~~l~~iL  116 (378)
                      |.+..|-|.||||  .||||++..|+..+
T Consensus         3 ~~r~~PNILvtGTPG~GKstl~~~lae~~   31 (176)
T KOG3347|consen    3 PERERPNILVTGTPGTGKSTLAERLAEKT   31 (176)
T ss_pred             hhhcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence            4455678999999  78999999999554

>TIGR00347 bioD dethiobiotin synthase

Probab=84.66  E-value=1.2  Score=38.60  Aligned_cols=24  Identities=42%  Similarity=0.706  Sum_probs=22.8

Q ss_pred             CChHHHHHHHHHHHHHcCCceEee
Q 017061          103 KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus       103 nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .|||+++.-|+..|++.|++|+++
T Consensus         9 ~GKT~va~~L~~~l~~~g~~V~~~   32 (166)
T TIGR00347         9 VGKTVASSALAAKLKKAGYSVGYY   32 (166)
T ss_pred             ccHHHHHHHHHHHHHHCCCcEEEE
Confidence            799999999999999999999885

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=84.27  E-value=2.5  Score=43.13  Aligned_cols=34  Identities=32%  Similarity=0.480  Sum_probs=29.3

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ..+|.++|-  .|||||++-|+..|.+.|++|++.+
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~  130 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA  130 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence            457888885  7899999999999999999998753

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=84.27  E-value=1.5  Score=41.58  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           93 KFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        93 ~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ..++|.|+   |--|||||+..|+..|.+.|+||++.
T Consensus        56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli   92 (265)
T COG0489          56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL   92 (265)
T ss_pred             cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence            45678888   45799999999999999999999986

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=84.24  E-value=1.4  Score=38.31  Aligned_cols=26  Identities=38%  Similarity=0.517  Sum_probs=23.8

Q ss_pred             CCCChHHHHHHHHHHHHHcCCceEee
Q 017061          101 GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus       101 GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      |--||||++.-|+..|.+.|++|.+.
T Consensus         9 gG~GKTt~a~~LA~~la~~g~~vllv   34 (169)
T cd02037           9 GGVGKSTVAVNLALALAKLGYKVGLL   34 (169)
T ss_pred             CcCChhHHHHHHHHHHHHcCCcEEEE
Confidence            66899999999999999999999874

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=84.06  E-value=1.3  Score=45.40  Aligned_cols=31  Identities=29%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             EEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061           97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        97 I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      |-||||   .|||+++..|...|++.|++|+.|-
T Consensus         2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK   35 (449)
T TIGR00379         2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFK   35 (449)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence            456665   8999999999999999999998873

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=83.90  E-value=0.81  Score=43.02  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|.  |-.|||||+.-|++.|.+.| +|.+.
T Consensus         3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLli   35 (264)
T PRK13231          3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVI   35 (264)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence            456665  66899999999999999999 99775

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=83.89  E-value=1.4  Score=38.27  Aligned_cols=28  Identities=36%  Similarity=0.351  Sum_probs=24.9

Q ss_pred             EeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061           99 IAGTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        99 VTGTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      -.|-.||||++..|+..|.+.|++|.+.
T Consensus         7 ~kgG~GKtt~a~~la~~l~~~g~~vllv   34 (179)
T cd02036           7 GKGGVGKTTTTANLGTALAQLGYKVVLI   34 (179)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            3467899999999999999999999875

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=83.86  E-value=1.7  Score=44.10  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061           94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH  130 (378)
Q Consensus        94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~  130 (378)
                      +++|+|+|  -.||||.+.-|-..|+..||+|+++-..|
T Consensus         1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h   39 (452)
T PRK14495          1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH   39 (452)
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            46899999  58999999999999999999999975443

>PRK10818 cell division inhibitor MinD; Provisional

Probab=83.84  E-value=1.6  Score=41.02  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=27.6

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+   |-.||||++..|+..|.+.|++|.+.
T Consensus         3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllv   37 (270)
T PRK10818          3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI   37 (270)
T ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            567776   45899999999999999999999774

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=83.78  E-value=2  Score=38.19  Aligned_cols=35  Identities=26%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ..++|+|+|-  .||||...-|...|...|++||..-
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik   41 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence            5679999994  7999999999999999999998864

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=83.66  E-value=1.7  Score=41.46  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=29.6

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      +++|+|+|  -.||||.+.-|...|++.| +|++.-.
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh   36 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH   36 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence            36899999  6899999999999999999 8988643

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=83.28  E-value=1.8  Score=42.32  Aligned_cols=33  Identities=33%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEe
Q 017061           93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC  125 (378)
Q Consensus        93 ~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~  125 (378)
                      +.-+|.+.|.|  |||||.+=|++.|.+.|++|-+
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll  172 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL  172 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence            35578888886  6999999999999999999966

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=83.25  E-value=1.3  Score=40.50  Aligned_cols=37  Identities=27%  Similarity=0.291  Sum_probs=32.3

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH  130 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~  130 (378)
                      ...|.|-|-  .||||.+.+|...|++.|++|.+..-|.
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~   41 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG   41 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            357999996  8999999999999999999998776664

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=82.83  E-value=2.3  Score=36.08  Aligned_cols=53  Identities=26%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             ChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCccc
Q 017061           76 DLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIK  132 (378)
Q Consensus        76 ~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~  132 (378)
                      +.+.+.++.+.++.--..-.+|.+.|.  .||||.+..+...|   |.. ...+||...
T Consensus         4 s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l---g~~-~~v~SPTf~   58 (133)
T TIGR00150         4 DEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL---GIQ-GNVTSPTFT   58 (133)
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc---CCC-CcccCCCee
Confidence            467788888888765455578999997  78999888888777   432 246888743

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=82.82  E-value=2.4  Score=37.33  Aligned_cols=34  Identities=29%  Similarity=0.438  Sum_probs=28.7

Q ss_pred             EEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP  129 (378)
Q Consensus        96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp  129 (378)
                      +|.|.|.  .||||.+..|+..|...|+++.....|
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~   37 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP   37 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            6888885  799999999999999999998665444

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=82.78  E-value=2.3  Score=43.16  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=30.0

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      ..+|.++|-  .|||||++-|+..|+..|++|++.+.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~  136 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA  136 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence            458899985  78999999999999999999988643

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PLN02422 dephospho-CoA kinase

Probab=82.49  E-value=37  Score=31.61  Aligned_cols=25  Identities=24%  Similarity=0.551  Sum_probs=20.4

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV  123 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v  123 (378)
                      ++|+|||.  .||||++.++.    +.|+.+
T Consensus         2 ~~igltG~igsGKstv~~~l~----~~g~~~   28 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK----SSGIPV   28 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH----HCCCeE
Confidence            47999996  89999999887    357765

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=82.47  E-value=1.4  Score=41.50  Aligned_cols=26  Identities=31%  Similarity=0.252  Sum_probs=23.9

Q ss_pred             CCCChHHHHHHHHHHHHHcCCceEee
Q 017061          101 GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus       101 GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      |-.||||||.-|+..|.+.|+||.+.
T Consensus         9 GGVGKTT~~~nLA~~La~~g~rVLli   34 (268)
T TIGR01281         9 GGIGKSTTSSNLSVAFAKLGKRVLQI   34 (268)
T ss_pred             CcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence            67899999999999999999999775

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=82.10  E-value=1.4  Score=45.44  Aligned_cols=31  Identities=39%  Similarity=0.563  Sum_probs=27.1

Q ss_pred             EEeCC---CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           98 HIAGT---KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        98 ~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      -||||   .|||.++..|..+|++.|++|+-|-.
T Consensus         2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp   35 (475)
T TIGR00313         2 MVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS   35 (475)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence            46666   89999999999999999999997754

>PLN02796 D-glycerate 3-kinase

Probab=81.99  E-value=5.6  Score=39.26  Aligned_cols=32  Identities=19%  Similarity=0.217  Sum_probs=27.6

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      -+|+|+|.  .||||++..|..+|...|++++.+
T Consensus       101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~I  134 (347)
T PLN02796        101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASL  134 (347)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEE
Confidence            47999996  789999999999998888877764

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []

Probab=81.95  E-value=3.7  Score=40.21  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             CCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061           91 HSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYTSP  129 (378)
Q Consensus        91 ~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~tSp  129 (378)
                      ....|+|.|    +|-.|||-++.+|+..|++.|+++++.+-.
T Consensus        32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRG   74 (326)
T PF02606_consen   32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRG   74 (326)
T ss_pred             CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence            346788887    488999999999999999999999987543

This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=81.62  E-value=3.7  Score=39.27  Aligned_cols=41  Identities=34%  Similarity=0.477  Sum_probs=27.6

Q ss_pred             HHHHHHhCCCCC----CCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061           81 NRLMDRLGNPHS----KFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (378)
Q Consensus        81 ~~ll~~lg~p~~----~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~  122 (378)
                      .++...+|.+..    .+-+.|=+|| |||+++..++..|...|+.
T Consensus        44 ~~~r~~~g~~~~~~~~~vll~G~pGT-GKT~lA~~ia~~l~~~g~~   88 (284)
T TIGR02880        44 ERLRQRLGLASAAPTLHMSFTGNPGT-GKTTVALRMAQILHRLGYV   88 (284)
T ss_pred             HHHHHHhCCCcCCCCceEEEEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence            344445665432    2224455677 9999999999999988764

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=81.40  E-value=2.6  Score=38.76  Aligned_cols=32  Identities=38%  Similarity=0.358  Sum_probs=25.8

Q ss_pred             CCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEe
Q 017061           92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGC  125 (378)
Q Consensus        92 ~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~  125 (378)
                      .+.-+|+|+|  ..||||.+..|...|...  ++++
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~   39 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVV   39 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceE
Confidence            4556899998  489999999999999855  4544

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=81.21  E-value=2.1  Score=39.40  Aligned_cols=30  Identities=33%  Similarity=0.462  Sum_probs=24.0

Q ss_pred             EEEEeCC--CChHHHHHHHHHHHHH--cCCceEe
Q 017061           96 TVHIAGT--KGKGSTAAFLSSILRA--EGYSVGC  125 (378)
Q Consensus        96 ~I~VTGT--nGKtSTt~~l~~iL~~--~G~~vg~  125 (378)
                      +|+|+|.  .||||++..|...|..  .+.++.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v   34 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL   34 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence            5899996  6899999999999986  4455554

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=81.20  E-value=2.6  Score=39.10  Aligned_cols=32  Identities=34%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.++   |-.||||.+.+|++.|.+.|.+|.++
T Consensus         2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lI   36 (231)
T PF07015_consen    2 PVITFASSKGGAGKTTAAMALASELAARGARVALI   36 (231)
T ss_pred             CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            455555   67899999999999999999999987

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=80.96  E-value=2.5  Score=39.44  Aligned_cols=30  Identities=30%  Similarity=0.265  Sum_probs=24.6

Q ss_pred             EEEeCCCChHHHHHHHHHHHH-HcCCceEee
Q 017061           97 VHIAGTKGKGSTAAFLSSILR-AEGYSVGCY  126 (378)
Q Consensus        97 I~VTGTnGKtSTt~~l~~iL~-~~G~~vg~~  126 (378)
                      +..-|-.|||||+-.++..|. ..|+||-+.
T Consensus         8 ~n~KGGvGKTT~a~nLa~~La~~~~~kVLli   38 (259)
T COG1192           8 ANQKGGVGKTTTAVNLAAALAKRGGKKVLLI   38 (259)
T ss_pred             EecCCCccHHHHHHHHHHHHHHhcCCcEEEE
Confidence            334478999999999999999 566999775

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=80.61  E-value=1.8  Score=41.64  Aligned_cols=30  Identities=27%  Similarity=0.269  Sum_probs=26.0

Q ss_pred             EEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           97 VHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        97 I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      |+|+  |-.|||||+.-|+..|.+.|+||-+.
T Consensus         3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI   34 (290)
T CHL00072          3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQI   34 (290)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            5555  57899999999999999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
1o5z_A	442	Crystal Structure Of Folylpolyglutamate Synthase (T		2e-38
1fgs_A	428	Folylpolyglutamate Synthetase From Lactobacillus Ca		3e-28
2gca_A	428	Apo Form Of L. Casei Fpgs Length = 428		1e-27
1jbv_A	428	Fpgs-Amppcp Complex Length = 428		1e-27
2gcb_A	428	G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 42		6e-27
2gc6_A	428	S73a Mutant Of L. Casei Fpgs Length = 428		1e-26
2gc5_A	428	G51s Mutant Of L. Casei Fpgs Length = 428		2e-26
1w78_A	422	E.Coli Folc In Complex With Dhpp And Adp Length = 4		2e-23
3n2a_A	437	Crystal Structure Of Bifunctional Folylpolyglutamat		3e-22
2vor_A	487	Crystal Structures Of Mycobacterium Tuberculosis Fo		1e-21
2vos_A	487	Mycobacterium Tuberculosis Folylpolyglutamate Synth		6e-13

>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166) From Thermotoga Maritima At 2.10 A Resolution Length = 442

Iteration: 1
 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/264 (38%), Positives = 145/264 (54%), Gaps = 27/264 (10%)
Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R++ L+ +LGNPH ++KT+HI GT GKGS A  +S+IL ++GY VG Y SPH+ T RE
Sbjct: 35  LERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRE 94
Query: 137 RMNVGRLNRP-VSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
           R+   RLN   +S + +  ++  ++ +L+E  + E    + FEV+TAMAF  FA+ +VDI
Sbjct: 95  RI---RLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDI 151
Query: 196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLV 255
           AV+E GLGG  DATN++       S I T+  +H   LG ++E IA  KSGIIK   PLV
Sbjct: 152 AVLEVGLGGRLDATNVVFP---LCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLV 208
Query: 256 LGG---PFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAE 312
            G      L  +E + R ++S M        D      +  L +  +R    C      E
Sbjct: 209 TGERKREALKVMEDVARKKSSRMY-----VIDKDFSVKVKSLKLHENR-FDYC-----GE 257
Query: 313 RDLKLSIELLDVKLCMIGNHQLHN 336
              +      D+ L M G HQ+ N
Sbjct: 258 NTFE------DLVLTMNGPHQIEN 275

>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei Length = 428

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 115/216 (53%), Gaps = 22/216 (10%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
           L+   + + +  +T FE +TA+A+  F Q  VD+AVIE G+GG  D+TN+I+      SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
           +T +  +H   LG ++  IA  K+GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG 198

>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs Length = 428

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 22/216 (10%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
           L+   + + +  +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+      SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
           +T +  +H   LG ++  IA  K+GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG 198

>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex Length = 428

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 22/216 (10%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
           L+   + + +  +T FE +TA+A+  F Q  VD+AVIE G+GG  D+TN+I+      SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
           +T +  +H   LG ++  IA   +GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVTG 198

>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 428

Iteration: 1
 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 22/216 (10%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GK + A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKSTAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
           L+   + + +  +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+      SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
           +T++  +H   LG ++  IA  K+GIIK G P+V G
Sbjct: 163 LTSVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG 198

>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs Length = 428

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 22/216 (10%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YT+P I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
           L+   + + +  +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+      SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
           +T +  +H   LG ++  IA   +GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVTG 198

>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs Length = 428

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 22/216 (10%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GK S A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKSSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
           L+   + + +  +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+      SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
           +T +  +H   LG ++  IA   +GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVTG 198

>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp Length = 422

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 75  FDLG--RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIK 132
            DLG  R++ +  RLG          +AGT GKG+T   L SIL A GY VG Y+SPH+ 
Sbjct: 28  IDLGLERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLV 87
Query: 133 TIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNH 192
              ER+ V     P SA   +  F +I+    +        +T+FE  T  A  LF Q  
Sbjct: 88  RYTERVRVQGQELPESAHTAS--FAEIESARGDI------SLTYFEYGTLSALWLFKQAQ 139
Query: 193 VDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252
           +D+ ++E GLGG  DATNI+ +     +V+T+I  +HT  LG   E+I    +GI +  +
Sbjct: 140 LDVVILEVGLGGRLDATNIVDAD---VAVVTSIALDHTDWLGPDRESIGREXAGIFRSEK 196
Query: 253 PLVLGGPFLPH-IEHILRDEASLM 275
           P ++G P +P  I  + +++ +L+
Sbjct: 197 PAIVGEPEMPSTIADVAQEKGALL 220

>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92 Length = 437

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 98/187 (52%), Gaps = 11/187 (5%)
Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R+ ++ +RL       K   +AGT GKG+T   L +IL A G  VG Y+SPH+    E
Sbjct: 35  LERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTE 94
Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIA 196
           R+        +  + L+   H       EA R  +  +T+FE  T  A  LF Q  +D+ 
Sbjct: 95  RVR-------IQGQELSEAEHSHSFAQIEAGR-GDISLTYFEFGTLSALQLFKQAKLDVV 146
Query: 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVL 256
           ++E GLGG  DATNI+ S     + IT+I  +HT  LG   E+I   K+G+ + G+P V+
Sbjct: 147 ILEVGLGGRLDATNIVDSD---VAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVV 203
Query: 257 GGPFLPH 263
           G P +P 
Sbjct: 204 GEPDMPQ 210

>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp And Amppcp Length = 487

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 12/179 (6%)
Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R++ LMD LG+P   + ++HIAGT GK S A  + +++ A     G  TSPH+++  E
Sbjct: 47  LTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVE 106
Query: 137 RMNVGRLNRPVSAKALNCLFHKIK---GVLDEAIRLENG----CITHFEVLTAMAFALFA 189
           R+++    +P+S       + +I+    ++D+  +   G     ++ FEVLTAMAFA FA
Sbjct: 107 RISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFA 164
Query: 190 QNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII 248
              VD+AV+E G+GG  DATN+I++     +VIT I  +H   LG  +  IA  K+GII
Sbjct: 165 DAPVDVAVVEVGMGGRWDATNVINAP---VAVITPISIDHVDYLGADIAGIAGEKAGII 220

>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp Length = 487

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 12/179 (6%)
Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R++ L D LG+P   + ++HIAGT GK S A  + +++ A     G  TSPH+++  E
Sbjct: 47  LTRISALXDLLGSPQRSYPSIHIAGTNGKTSVARXVDALVTALHRRTGRTTSPHLQSPVE 106
Query: 137 RMNVGRLNRPVSAKALNCLFHKIK---GVLDEAIRLENG----CITHFEVLTAMAFALFA 189
           R+++    +P+S       + +I+    ++D+  +   G      + FEVLTA AFA FA
Sbjct: 107 RISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAXSKFEVLTAXAFAAFA 164
Query: 190 QNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII 248
              VD+AV+E G GG  DATN+I++     +VIT I  +H   LG  +  IA  K+GII
Sbjct: 165 DAPVDVAVVEVGXGGRWDATNVINAP---VAVITPISIDHVDYLGADIAGIAGEKAGII 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	8e-92
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	1e-90
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	1e-83
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	4e-79
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	4e-76
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	3e-08
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	4e-08
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	7e-04

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442

 Score =  281 bits (722), Expect = 8e-92
 Identities = 105/313 (33%), Positives = 153/313 (48%), Gaps = 39/313 (12%)

Query: 39  SSEEPELMNFMNY---LDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFK 95
           S +     + M Y   L  L +    G  K           L R++ L+ +LGNPH ++K
Sbjct: 3   SDKIHHHHHHMAYLEVLRYLYHKRPMGKVK---------PGLERISMLLSKLGNPHLEYK 53

Query: 96  TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN-RPVSAKALNC 154
           T+HI GT GKGS A  +S+IL ++GY VG Y SPH+ T RER+   RLN   +S + +  
Sbjct: 54  TIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERI---RLNEEYISEEDVVK 110

Query: 155 LFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS 214
           ++  ++ +L+E  + E    + FEV+TAMAF  FA+ +VDIAV+E GLGG  DATN++  
Sbjct: 111 IYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVFP 170

Query: 215 SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASL 274
                S I T+  +H   LG ++E IA  KSGIIK   PLV  G        ++ D A  
Sbjct: 171 ---LCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVT-GERKREALKVMEDVARK 226

Query: 275 MCSQVVSA---YDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGN 331
             S++      +   +++     + F                D        D+ L M G 
Sbjct: 227 KSSRMYVIDKDFSVKVKSLKLHENRF----------------DYCGENTFEDLVLTMNGP 270

Query: 332 HQLHNALTATCAA 344
           HQ+ NA  A    
Sbjct: 271 HQIENAGVALKTL 283

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428

 Score =  277 bits (712), Expect = 1e-90
 Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 37/313 (11%)

Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+              D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKT-------------GDHRRILTLLHALGNPQQQGRYIHVTGT 47

Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN-RPVSAKALNCLFHKIKG 161
            GKGS A  ++ +L A G +VG YTSP I    ER+    ++  P+   AL      ++ 
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERI---MIDHEPIPDAALVNAVAFVRA 104

Query: 162 VLDEAIRLENGC-ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAAS 220
            L+   + +    +T FE +TA+A+  F Q  VD+AVIE G+GG  D+TN+I+      S
Sbjct: 105 ALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVS 161

Query: 221 VITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVV 280
           V+T +  +H   LG ++  IA  K+GIIK G P+V  G  +P    ++  + +   SQ +
Sbjct: 162 VLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT-GNLVPDAAAVVAAKVATTGSQWL 220

Query: 281 SAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTA 340
             +D         L  +  R         + +        + D+++ ++G++Q  N   A
Sbjct: 221 -RFDRDFSVPKAKLHGWGQR------FTYEDQDG-----RISDLEVPLVGDYQQRNMAIA 268

Query: 341 TCAALCLRDQGGY 353
              A     Q  +
Sbjct: 269 IQTAKVYAKQTEW 281

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487

 Score =  261 bits (670), Expect = 1e-83
 Identities = 85/297 (28%), Positives = 137/297 (46%), Gaps = 33/297 (11%)

Query: 75  FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTI 134
             L R++ LMD LG+P   + ++HIAGT GK S A  + +++ A     G  TSPH+++ 
Sbjct: 45  PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSP 104

Query: 135 RERMNVGRLN-RPVSAKALNCLFHKIKGVLDEAIRLENGC-------ITHFEVLTAMAFA 186
            ER+    ++ +P+S       + +I+ ++    +            ++ FEVLTAMAFA
Sbjct: 105 VERI---SIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFA 161

Query: 187 LFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
            FA   VD+AV+E G+GG  DATN+I++     +VIT I  +H   LG  +  IA  K+G
Sbjct: 162 AFADAPVDVAVVEVGMGGRWDATNVINA---PVAVITPISIDHVDYLGADIAGIAGEKAG 218

Query: 247 IIKYGR------PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDR 300
           II            V+G   +P +  +L  E+    + V    D+        +++    
Sbjct: 219 IITRAPDGSPDTVAVIGRQ-VPKVMEVLLAESVRADASVA-REDSEFAVLRRQIAVGGQV 276

Query: 301 PCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLS 357
                 + +Q            D+ L + G HQ HNA+ A  +       G    L 
Sbjct: 277 ------LQLQGLGG-----VYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLD 322

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Length = 437

 Score =  249 bits (637), Expect = 4e-79
 Identities = 82/278 (29%), Positives = 129/278 (46%), Gaps = 26/278 (9%)

Query: 74  GFDLG--RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI 131
             +LG  R+ ++ +RL       K   +AGT GKG+T   L +IL A G  VG Y+SPH+
Sbjct: 30  PIELGLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHL 89

Query: 132 KTIRERMNVGRLN-RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQ 190
               ER+   R+  + +S    +  F +I+    + I L     T+FE  T  A  LF Q
Sbjct: 90  LRYTERV---RIQGQELSEAEHSHSFAQIEAGRGD-ISL-----TYFEFGTLSALQLFKQ 140

Query: 191 NHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
             +D+ ++E GLGG  DATNI+ S     + IT+I  +HT  LG   E+I   K+G+ + 
Sbjct: 141 AKLDVVILEVGLGGRLDATNIVDS---DVAAITSIALDHTDWLGYDRESIGREKAGVFRG 197

Query: 251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQ 310
           G+P V+G P +P     + D A+ + +Q+   Y   +    +    F+ +      I   
Sbjct: 198 GKPAVVGEPDMP---QSIADVAAELGAQL---YRRDVAWKFSQQEPFDQQEPVDQQINGW 251

Query: 311 AERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLR 348
             +  +  +  L      + N  L NA TA        
Sbjct: 252 HWQCGERQLTGL-----PVPNVPLANAATALAVLHYSE 284

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422

 Score =  240 bits (615), Expect = 4e-76
 Identities = 79/274 (28%), Positives = 120/274 (43%), Gaps = 38/274 (13%)

Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R++ +  RLG          +AGT GKG+T   L SIL A GY VG Y+SPH+    E
Sbjct: 32  LERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTE 91

Query: 137 RMNVGRLN-RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
           R+   R+  + +   A    F +I+    + I L     T+FE  T  A  LF Q  +D+
Sbjct: 92  RV---RVQGQELPESAHTASFAEIESARGD-ISL-----TYFEYGTLSALWLFKQAQLDV 142

Query: 196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLV 255
            ++E GLGG  DATNI+ +     +V+T+I  +HT  LG   E+I   K+GI +  +P +
Sbjct: 143 VILEVGLGGRLDATNIVDA---DVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAI 199

Query: 256 LGGPFLPHIEHILRDEASLMCSQVVSA-YDAGIRATINGLSMFNDRPCQSCDIIVQAERD 314
           +G P +P     + D A    + +     +     T +  +                  D
Sbjct: 200 VGEPEMP---STIADVAQEKGALLQRRGVEWNYSVTDHDWAF----------------SD 240

Query: 315 LKLSIELLDVKLCMIGNHQLHNALTATCAALCLR 348
              ++E L      +      NA TA  A     
Sbjct: 241 AHGTLENLP-----LPLVPQPNAATALAALRASG 269

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 26/158 (16%)

Query: 194 DIAVIEAGLGGARDATNIISSSGLA---ASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
           +  V+E G        +I   S LA    +++T +GE H A        IA  K  I   
Sbjct: 153 EKLVLEMG---QDHLGDIHLLSELARPKTAIVTLVGEAHLAFFK-DRSEIAKGKMQIADG 208

Query: 251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQ 310
              +  G   L   + I+ D   +    V     A +  T               D++ +
Sbjct: 209 ---MASGSLLLAPADPIVEDYLPIDKKVVRFGQGAELEIT---------------DLVER 250

Query: 311 AER-DLKLSIELLDVKLCMIGNHQLHNALTATCAALCL 347
            +    K +     + L + G +   NA+ A+  AL  
Sbjct: 251 KDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQE 288

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 32/165 (19%)

Query: 194 DIAVIEAGLGGARDATNIISSSGLA---ASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
           D AVIE G   A     I  +  L    A+++  +   H    G SL  +A AK  I   
Sbjct: 153 DYAVIELG---ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSG 208

Query: 251 GRP---LVLGG--PFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSC 305
                  ++        + + ++        S   +A ++   AT               
Sbjct: 209 LPENGIAIMNADNNDWLNWQSVIGSRKVWRFS--PNAANSDFTAT--------------- 251

Query: 306 DIIVQAER---DLKLSIELLDVKLCMIGNHQLHNALTATCAALCL 347
           +I V +      L+     +DV L + G H + NAL A   ++ +
Sbjct: 252 NIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSV 296

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 88  GNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVG 124
           G+P  +   + I GT GK +T   + + LRA G   G
Sbjct: 140 GHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAG 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	100.0
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	100.0
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	100.0
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	100.0
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	100.0
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	100.0
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	100.0
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	100.0
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	100.0
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	100.0
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	100.0
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	100.0
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	100.0
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	100.0
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	100.0
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	100.0
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	99.97
2obn_A	349	Hypothetical protein; structural genomics, joint c	96.17
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.21
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.96
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.64
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.34
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	94.14
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	93.92
2g0t_A	350	Conserved hypothetical protein; structural genomic	93.09
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	92.8
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	92.79
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	92.74
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	92.44
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	92.36
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	91.71
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	91.15
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	90.99
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	90.51
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	90.17
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	89.98
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	89.89
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	89.85
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	89.81
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	89.67
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	89.13
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	88.84
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	88.57
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	88.57
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	88.43
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	88.19
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	88.09
3end_A	307	Light-independent protochlorophyllide reductase ir	87.96
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	87.75
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	87.14
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	86.09
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	85.61
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	85.31
3cwq_A	209	Para family chromosome partitioning protein; alpha	85.22
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	84.72
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	83.89
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	83.68
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	83.23
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	82.73
2vo1_A	295	CTP synthase 1; pyrimidine biosynthesis, glutamine	82.44
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	82.17
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	81.96
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	81.65
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	80.92
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	80.6
2xxa_A	433	Signal recognition particle protein; protein trans	80.51

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=100.00  E-value=1.1e-58  Score=466.91  Aligned_cols=293  Identities=27%  Similarity=0.316  Sum_probs=230.5

Q ss_pred             ccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061           43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (378)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~  122 (378)
                      .+|++|++||++++.+   |+          +++|+||+++|++||+|+.++|+||||||||||||++||++||+++||+
T Consensus        14 ~~~~~~l~~l~~~~~~---~~----------~~gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~   80 (437)
T 3nrs_A           14 SPLAAWLCYLEHLHSQ---PI----------ELGLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLR   80 (437)
T ss_dssp             SCHHHHHHHHHTC--------------------CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred             cCHHHHHHHHHhcCCC---CC----------CCCHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCc
Confidence            4699999999999865   33          3789999999999999999999999999999999999999999999999


Q ss_pred             eEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCC
Q 017061          123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGL  202 (378)
Q Consensus       123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~  202 (378)
                      ||+|||||+.+|||||++|  |.+|+++++.++++++++..      +..++|+||+.|++||.+|.+.++|++|+|+|+
T Consensus        81 vg~~tSphl~~~neri~i~--g~~i~~~~~~~~~~~v~~~~------~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGl  152 (437)
T 3nrs_A           81 VGVYSSPHLLRYTERVRIQ--GQELSEAEHSHSFAQIEAGR------GDISLTYFEFGTLSALQLFKQAKLDVVILEVGL  152 (437)
T ss_dssp             EEEECCCCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEECCCCcCCcceEEEEC--CEECCHHHHHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            9999999999999999999  99999999999999887653      356899999999999999999999999999999


Q ss_pred             CCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEe
Q 017061          203 GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSA  282 (378)
Q Consensus       203 gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~  282 (378)
                      ||++|++|+++   |+++|||||++||+|+||+|+|+|+++|++||++++++|+| .|++.  .++.+.+++.+++++++
T Consensus       153 ggrld~tnii~---p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~-~d~~~--~~~~~~a~~~~~~~~~~  226 (437)
T 3nrs_A          153 GGRLDATNIVD---SDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVG-EPDMP--QSIADVAAELGAQLYRR  226 (437)
T ss_dssp             SSTTSGGGGSC---CSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEEC-CSSCC--HHHHHHHHHHTCEEEEB
T ss_pred             CCccccccccC---CCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEEC-CccHH--HHHHHHHHHcCCcEEEe
Confidence            99999999986   68999999999999999999999999999999999999999 45543  35677788889999987


Q ss_pred             cccccchhccc-cccCCCCCCcccceeEeecccccccccccccccCCC--chhHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 017061          283 YDAGIRATING-LSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI--GNHQLHNALTATCAALCLRDQGGYLMLSYF  359 (378)
Q Consensus       283 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~--G~hq~~NalaAlaaa~~L~~~~~gi~~~~I  359 (378)
                      +.. ....... .............+.+..       .....+.++++  |.||+.||++|+++ .     +++++.+.|
T Consensus       227 g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~l~~~~~~Na~~Alaa~~~-~-----~lgi~~~~i  292 (437)
T 3nrs_A          227 DVA-WKFSQQEPFDQQEPVDQQINGWHWQC-------GERQLTGLPVPNVPLANAATALAVLHY-S-----ELPLSDEAI  292 (437)
T ss_dssp             TTT-EEEEC--------------CCEEEEE-------TTEEEEEECCCSSCHHHHHHHHHHHHH-H-----TCCCCHHHH
T ss_pred             ccc-ceeeecccccccccccccCceEEEec-------CCcceeccCCcchhHHHHHHHHHHHHH-h-----CCCCCHHHH
Confidence            531 1100000 000000000000111110       00112345555  77777777777665 2     349999999


Q ss_pred             HHHHhcCCCCceeEEEec
Q 017061          360 LSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       360 ~~gL~~~~~~pgR~~~~~  377 (378)
                      ++||+++. ||||++.+.
T Consensus       293 ~~gL~~~~-~pGR~e~v~  309 (437)
T 3nrs_A          293 RQGLQAAS-LPGRFQVVS  309 (437)
T ss_dssp             HHHHHHCC-CTTSSEEEE
T ss_pred             HHHHHhCC-CCCceEEEe
Confidence            99999985 999998753

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=100.00  E-value=5.2e-57  Score=460.31  Aligned_cols=298  Identities=31%  Similarity=0.419  Sum_probs=245.2

Q ss_pred             cHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCce
Q 017061           44 ELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV  123 (378)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~v  123 (378)
                      +|++|++||+.++..  .++          +++|+||+.+++.||+|+.++++||||||||||||++||++||+++|++|
T Consensus        26 ~~~~~~~~l~~~~~~--~~~----------~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~v   93 (487)
T 2vos_A           26 SLLQVEHLLDQRWPE--TRI----------DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRT   93 (487)
T ss_dssp             HHHHHHHHHTTTC-----CC----------CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHhhCcc--cCC----------CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCe
Confidence            578888888775421  123          37899999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh-------cCCCcCHHHHHHHHHHHHHHhcCCCEE
Q 017061          124 GCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL-------ENGCITHFEVLTAMAFALFAQNHVDIA  196 (378)
Q Consensus       124 g~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~-------~~~~~t~fE~~t~~a~~~f~~~~~d~~  196 (378)
                      |+|||||+.+|+|||++|  |.+++++.+.++++++++..+.+...       ...++|+||++|++||.+|.+.++|++
T Consensus        94 G~~tSp~l~~~~eri~i~--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~  171 (487)
T 2vos_A           94 GRTTSPHLQSPVERISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVA  171 (487)
T ss_dssp             EEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEE
T ss_pred             EEECCCCcCcccceEEEC--CEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            999999999999999999  99999999999999999887765431       244699999999999999999999999


Q ss_pred             EEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccc------cCCCeEEEcCCCChhHHHHHHH
Q 017061          197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII------KYGRPLVLGGPFLPHIEHILRD  270 (378)
Q Consensus       197 VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Ii------k~~~~~V~~~~d~~~~~~vl~~  270 (378)
                      |+|+|+||++|.+|+++   |+++|||||++||+++||+|+|+|+++|++||      ++++++|+| .|+|.+..++.+
T Consensus       172 VlEvg~gg~~d~tn~i~---p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~-~dd~~~~~~~~~  247 (487)
T 2vos_A          172 VVEVGMGGRWDATNVIN---APVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIG-RQVPKVMEVLLA  247 (487)
T ss_dssp             EEECSSSSTTSTTCSSC---CSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEEC-CCCHHHHHHHHH
T ss_pred             EEEcCCCCccccccccC---CCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEe-CCCHHHHHHHHH
Confidence            99999999999999885   68999999999999999989999999999999      788999999 678888788877


Q ss_pred             HHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc---ccccccccCCCchhHHHHHHHHHHHHHH
Q 017061          271 EASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS---IELLDVKLCMIGNHQLHNALTATCAALC  346 (378)
Q Consensus       271 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~i~l~l~G~hq~~NalaAlaaa~~  346 (378)
                      .+.+.++++++++. ++               ......+...+ .+.+.   .....+.+|++|.||++|+++|++++..
T Consensus       248 ~a~~~~~~~~~~g~-d~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~  311 (487)
T 2vos_A          248 ESVRADASVAREDS-EF---------------AVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEA  311 (487)
T ss_dssp             HHHHTTCEEEEBTT-TB---------------EEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEecC-ce---------------EEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHH
Confidence            77777788887642 11               00000000000 01111   1112578999999999999999999998


Q ss_pred             HHhcC--CCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          347 LRDQG--GYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       347 L~~~~--~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |...+  ++++.+.|++||++|. ||||++.+
T Consensus       312 l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v  342 (487)
T 2vos_A          312 FFGAGAQRQLDGDAVRAGFAAVT-SPGRLERM  342 (487)
T ss_dssp             HTTC----CCCHHHHHHHHHTCC-CTTSSEEE
T ss_pred             HhhccccCCCCHHHHHHHHHhCc-CCCceEEE
Confidence            73221  3799999999999985 99998765

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=100.00  E-value=1.5e-56  Score=450.29  Aligned_cols=302  Identities=28%  Similarity=0.438  Sum_probs=250.6

Q ss_pred             ccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061           43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (378)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~  122 (378)
                      ++|++|++||++++.+   |+          +++|+|++++|++||+|+.+.++||||||||||||++||+++|+++|++
T Consensus         1 ~~~~~~~~~l~~~~~~---~~----------~~~l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~   67 (428)
T 1jbw_A            1 MNYTETVAYIHSFPRL---AK----------TGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLT   67 (428)
T ss_dssp             CCHHHHHHHHTTCCCC---CC----------CSSCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHhhccc---CC----------CCCHHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCC
Confidence            3589999999987754   33          3789999999999999999999999999999999999999999999999


Q ss_pred             eEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh-cCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeC
Q 017061          123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL-ENGCITHFEVLTAMAFALFAQNHVDIAVIEAG  201 (378)
Q Consensus       123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~-~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg  201 (378)
                      ||+|+|||+.+|+|||++|  |.+++++++.++++++.+..+++... +..++|+||++|++||.+|.+.++|++|+|+|
T Consensus        68 vg~~~sp~l~~~~eri~i~--g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg  145 (428)
T 1jbw_A           68 VGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVG  145 (428)
T ss_dssp             EEEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             EEEEeCCccCccceEEEEC--CEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence            9999999999999999999  99999999999999998877665421 23579999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEE
Q 017061          202 LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVS  281 (378)
Q Consensus       202 ~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~  281 (378)
                      ++|++|.+++++   |+++|||||++||+|+||+|+|+|+++|++||++++++|+| .|+|.+.+++.+.+++.++++++
T Consensus       146 ~~g~~d~t~~~~---p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~-~dd~~~~~~~~~~a~~~~~~~~~  221 (428)
T 1jbw_A          146 IGGDTDSTNVIT---PVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG-NLVPDAAAVVAAKVATTGSQWLR  221 (428)
T ss_dssp             SSSTTSTTCSCC---CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEEC-CCCHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCccccccccCC---CCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEe-CCCHHHHHHHHHHHHHcCCcEEE
Confidence            999999999884   68999999999999999989999999999999999999999 57888888887777777788888


Q ss_pred             ecccccchhccccccCCCCCCcccceeEeeccccccccccc-ccccCCCchhHHHHHHHHHHHHHHH-HhcCCCCCHHHH
Q 017061          282 AYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELL-DVKLCMIGNHQLHNALTATCAALCL-RDQGGYLMLSYF  359 (378)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~l~l~G~hq~~NalaAlaaa~~L-~~~~~gi~~~~I  359 (378)
                      ++. +......  ....  ..  ..+.+..      ..... .+.+|++|.||++|+++|++++..| ...++.++.+.|
T Consensus       222 ~g~-~~~~~~~--~~~~--~~--~~~~~~~------~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~~i~~~~i  288 (428)
T 1jbw_A          222 FDR-DFSVPKA--KLHG--WG--QRFTYED------QDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNI  288 (428)
T ss_dssp             BTT-TEEEEEE--EECS--SS--EEEEEEE------TTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             eCc-cceeecc--cccc--CC--ceEEEec------CCccccccccCCCChhHHHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence            752 1100000  0000  00  0011110      01112 5789999999999999999999988 333456999999


Q ss_pred             HHHHhcCCCCceeEEEec
Q 017061          360 LSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       360 ~~gL~~~~~~pgR~~~~~  377 (378)
                      ++||+++. ||||++.+.
T Consensus       289 ~~~L~~~~-~~gR~e~~~  305 (428)
T 1jbw_A          289 RQGLAASH-WPARLEKIS  305 (428)
T ss_dssp             HHHHHTCC-CTTSSEEEE
T ss_pred             HHHHHhCc-CCCceEEec
Confidence            99999996 999998753

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=100.00  E-value=6.2e-57  Score=454.89  Aligned_cols=298  Identities=34%  Similarity=0.477  Sum_probs=243.0

Q ss_pred             CCccHHHHHHHHHhcchhhhcC-CCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHc
Q 017061           41 EEPELMNFMNYLDSLKNFEKSG-VPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAE  119 (378)
Q Consensus        41 ~~~~~~~~~~~l~~~~~~~~~g-~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~  119 (378)
                      ..+.|++|++||++++.+   | +          +++|+|++++|+.||+|+.+.++||||||||||||++||+++|+++
T Consensus        11 ~~~~~~~~~~~l~~~~~~---~~~----------~~gl~~~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~   77 (442)
T 1o5z_A           11 HHMAYLEVLRYLYHKRPM---GKV----------KPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQ   77 (442)
T ss_dssp             CHHHHHHHHHHHHTC--------C----------CCCSHHHHHHHHHTTCGGGSSEEEEEECSSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhCcC---CCC----------CCCHHHHHHHHHHcCCchhcCCEEEEECCcCHHHHHHHHHHHHHHC
Confidence            356789999999987754   3 3          3689999999999999999999999999999999999999999999


Q ss_pred             CCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEe
Q 017061          120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE  199 (378)
Q Consensus       120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlE  199 (378)
                      |++|++|+|||+.+|||||++|  |.++++..+.++++++++..+.+...+..++|+||++|++||.+|.+.++|++|+|
T Consensus        78 G~~vg~~~Sphl~~~neri~in--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlE  155 (442)
T 1o5z_A           78 GYRVGSYYSPHLSTFRERIRLN--EEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLE  155 (442)
T ss_dssp             TCCEEEECCSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEECCCCcCccceeEEEC--CEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            9999999999999999999999  99999999999999999887776554557899999999999999999999999999


Q ss_pred             eCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeE
Q 017061          200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQV  279 (378)
Q Consensus       200 vg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~  279 (378)
                      +|++|++|.+++++   |+++|||||++||+|+||+|+|+|+++|++|+++++++|+| .|+|.+..++.+.|.+.++++
T Consensus       156 vg~~g~~d~t~~~~---P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~-~dd~~~~~~~~~~a~~~~~~~  231 (442)
T 1o5z_A          156 VGLGGRLDATNVVF---PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTG-ERKREALKVMEDVARKKSSRM  231 (442)
T ss_dssp             CSSSSTTCGGGGCC---CSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEEC-CCCHHHHHHHHHHHHHHTCCE
T ss_pred             cCCCCCccccccCC---CCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEc-CCChHHHHHHHHHHHHcCCcE
Confidence            99999999999875   68999999999999999989999999999999999999999 578888888877777778888


Q ss_pred             EEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHH--HHHhcCCCCCHH
Q 017061          280 VSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAAL--CLRDQGGYLMLS  357 (378)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~--~L~~~~~gi~~~  357 (378)
                      ++++. ++....  .......    ..+.+..      ......+.+|++|.||++|+++|++++.  .|     +++.+
T Consensus       232 ~~~~~-d~~~~~--~~~~~~~----~~~~~~~------~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l-----gi~~~  293 (442)
T 1o5z_A          232 YVIDK-DFSVKV--KSLKLHE----NRFDYCG------ENTFEDLVLTMNGPHQIENAGVALKTLEATGL-----PLSEK  293 (442)
T ss_dssp             EEBTT-TBEEEE--EECCTTC----EEEEEES------SSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC-----CCCHH
T ss_pred             EEeCc-ceeeec--cccccCC----ceEEEec------cccccccccCCCcHhHHHHHHHHHHHHHHhhc-----CCCHH
Confidence            88753 111000  0000000    0111110      0011257889999999999999999999  88     99999


Q ss_pred             HHHHHHhcCCCCceeEEEe
Q 017061          358 YFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       358 ~I~~gL~~~~~~pgR~~~~  376 (378)
                      .|++||++|. ||||++.+
T Consensus       294 ~i~~~L~~~~-~~gR~e~~  311 (442)
T 1o5z_A          294 AIREGLKNAK-NLGRFEIL  311 (442)
T ss_dssp             HHHHHHHHCC-CTTSSEEE
T ss_pred             HHHHHHHhCC-CCCceEEE
Confidence            9999999995 99999875

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=100.00  E-value=8.3e-53  Score=422.37  Aligned_cols=283  Identities=29%  Similarity=0.371  Sum_probs=234.8

Q ss_pred             cHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCce
Q 017061           44 ELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV  123 (378)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~v  123 (378)
                      ++++|++|+++++.+   ++          +++|+|++++|+.||+|+.+.++||||||||||||++||+++|+++|++|
T Consensus        12 ~~~~~~~~~~~~~~~---~~----------~~gl~r~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~   78 (422)
T 1w78_A           12 PLASWLSYLENLHSK---TI----------DLGLERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKV   78 (422)
T ss_dssp             CHHHHHHHHTTSSSS---SC----------CCCSHHHHHHHHHHTCSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred             hHHHHHHHHHhcccC---CC----------CCCHHHHHHHHHHcCCcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCE
Confidence            588999998877543   22          37899999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCC
Q 017061          124 GCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLG  203 (378)
Q Consensus       124 g~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~g  203 (378)
                      |+|+|||+.+|||||++|  |.+++++.+.++++.+.+..      ++.++|+||++|++||.+|.+.++|++|+|+|++
T Consensus        79 g~~~s~~l~~~neri~i~--g~~i~~~~~~~~~~~v~~~~------~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~  150 (422)
T 1w78_A           79 GVYSSPHLVRYTERVRVQ--GQELPESAHTASFAEIESAR------GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLG  150 (422)
T ss_dssp             EEECCSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHT------TTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             EEECCCCcCcCceEEEEC--CEECCHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            999999999999999999  99999999999998776542      3457899999999999999999999999999999


Q ss_pred             CCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEec
Q 017061          204 GARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAY  283 (378)
Q Consensus       204 g~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~  283 (378)
                      +++|.+++++   |+++|||||++||+|+||+|+|+|+++|++|+++++++|+| .|++.  ..+.+.+.+.++++++++
T Consensus       151 ~~~d~t~~~~---p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~-~d~~~--~~~~~~a~~~~~~~~~~g  224 (422)
T 1w78_A          151 GRLDATNIVD---ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVG-EPEMP--STIADVAQEKGALLQRRG  224 (422)
T ss_dssp             STTSGGGGSC---CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEEC-CSSCC--HHHHHHHHHHTCEEEEBT
T ss_pred             cccccccCCC---CCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEc-CccHH--HHHHHHHHHcCCceEEeC
Confidence            9999999875   68999999999999999989999999999999999999998 45553  245556666678888875


Q ss_pred             ccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017061          284 DAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGF  363 (378)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL  363 (378)
                      . +....     . .+.     .+.+..      ..... +.++++ .||++|+++|++++..+   +++++.+.|++||
T Consensus       225 ~-~~~~~-----~-~~~-----~~~~~~------~~~~~-~~l~l~-~hn~~Na~aAia~~~~~---~~gi~~~~i~~~L  281 (422)
T 1w78_A          225 V-EWNYS-----V-TDH-----DWAFSD------AHGTL-ENLPLP-LVPQPNAATALAALRAS---GLEVSENAIRDGI  281 (422)
T ss_dssp             T-TBEEE-----E-CSS-----CEEEEE------TTEEE-EEECCC-SSCHHHHHHHHHHHHHH---TCCCCHHHHHHHH
T ss_pred             c-ceeee-----c-cCc-----eEEEec------CCccc-ccCCch-HHHHHHHHHHHHHHHHh---CCCCCHHHHHHHH
Confidence            2 11000     0 000     111110      00111 567888 99999999999999886   4589999999999


Q ss_pred             hcCCCCceeEEEec
Q 017061          364 REEHFWRAEIFLMN  377 (378)
Q Consensus       364 ~~~~~~pgR~~~~~  377 (378)
                      ++|. ||||++.+.
T Consensus       282 ~~~~-~~gR~e~~~  294 (422)
T 1w78_A          282 ASAI-LPGRFQIVS  294 (422)
T ss_dssp             HHCC-CTTSSEEEE
T ss_pred             HhCC-CCceEEEEe
Confidence            9996 999998753

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=1.2e-39  Score=333.45  Aligned_cols=233  Identities=14%  Similarity=0.091  Sum_probs=173.7

Q ss_pred             hCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 017061           87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA  166 (378)
Q Consensus        87 lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~  166 (378)
                      +++|+.++++||||||||||||+.||++||+++|++|++++|++.       .++  +..++                  
T Consensus       101 ~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~-------~i~--~~~~~------------------  153 (498)
T 1e8c_A          101 YHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGN-------GLL--GKVIP------------------  153 (498)
T ss_dssp             TTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEE-------EET--TCCBC------------------
T ss_pred             hCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCc-------ccC--Ceeee------------------
Confidence            688999999999999999999999999999999999999999873       445  43332                  


Q ss_pred             HhhcCCCcCHHHHHHHHH-HHHHHhcCCCEEEEeeCC----CCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHH
Q 017061          167 IRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGL----GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIA  241 (378)
Q Consensus       167 ~~~~~~~~t~fE~~t~~a-~~~f~~~~~d~~VlEvg~----gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia  241 (378)
                           ..+|+||..++++ |.+|.+.++|++|+|+|+    ++++|.      .+|+++|||||++||+|+|| |+|+|+
T Consensus       154 -----~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~------~~p~vaViTNI~~DHld~~g-t~e~ia  221 (498)
T 1e8c_A          154 -----TENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAA------LKFAASVFTNLSRDHLDYHG-DMEHYE  221 (498)
T ss_dssp             -----CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTT------CBCSEEEECCCCSCCHHHHS-SHHHHH
T ss_pred             -----cCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccc------cCCCEEEEeCCChhhhhccC-CHHHHH
Confidence                 1357777777774 667889999999999996    445443      34789999999999999998 999999


Q ss_pred             HHHhccccC--CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCC---CCcccceeEeecc-cc
Q 017061          242 MAKSGIIKY--GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDR---PCQSCDIIVQAER-DL  315 (378)
Q Consensus       242 ~~Ka~Iik~--~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~  315 (378)
                      ++|++||+.  ++++|+| .|||....++.. +...++++++|+..            ...   ++...++.....+ .+
T Consensus       222 ~aK~~i~~~~~~~~~V~n-~dd~~~~~~~~~-~~~~~~~v~~~g~~------------~~~~~~d~~~~~~~~~~~g~~f  287 (498)
T 1e8c_A          222 AAKWLLYSEHHCGQAIIN-ADDEVGRRWLAK-LPDAVAVSMEDHIN------------PNCHGRWLKATEVNYHDSGATI  287 (498)
T ss_dssp             HHHHHHHHTSBCCEEEEE-TTSHHHHHHHTT-CTTCEEEESSSCCC------------TTTCSEEEEEEEEEECSSCEEE
T ss_pred             HHHHHHhccCCCCeEEEE-CCCHHHHHHHHh-hhccCCcEEEEecC------------CCCCcCCEEEEEEEEcCCceEE
Confidence            999999975  6789999 578866544322 11112255555411            001   1211111111111 11


Q ss_pred             ccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061          316 KLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       316 ~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~  377 (378)
                      .+.  .+...+.+|++|.||++|+++|++++..|     |++.+.|++||++|.+|||||+.+.
T Consensus       288 ~~~~~~~~~~~~l~l~G~hnv~NalaAia~~~~l-----Gi~~~~i~~~L~~~~~~~gR~e~v~  346 (498)
T 1e8c_A          288 RFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL-----GYPLADLLKTAARLQPVCGRMEVFT  346 (498)
T ss_dssp             EEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCCCTTSSEEEC
T ss_pred             EEEECCceEEEEecCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEEE
Confidence            111  11235789999999999999999999999     9999999999999988999998763

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=100.00  E-value=2.2e-38  Score=326.48  Aligned_cols=238  Identities=19%  Similarity=0.222  Sum_probs=179.1

Q ss_pred             hHHHHHHHHH-hCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061           77 LGRMNRLMDR-LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL  155 (378)
Q Consensus        77 L~r~~~ll~~-lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~  155 (378)
                      +..+..+.+. +++|+.++++||||||||||||+.||++||+++|+++++++|.       ++.+|  |..++.      
T Consensus       128 ~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~--~~~~~~------  192 (535)
T 2wtz_A          128 RGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVG--GADLPS------  192 (535)
T ss_dssp             HHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEET--TEEECC------
T ss_pred             HHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeEC--CEeccc------
Confidence            3445555443 6899889999999999999999999999999999999999873       45677  666652      


Q ss_pred             HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHH-HHHhcCCCEEEEeeCC----CCCcccccccccCCCcEEEEccCChhhH
Q 017061          156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFA-LFAQNHVDIAVIEAGL----GGARDATNIISSSGLAASVITTIGEEHT  230 (378)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~-~f~~~~~d~~VlEvg~----gg~~D~t~~~~~~~p~vaVITNI~~DHl  230 (378)
                                       .+++||..++.+++ .|.+.++|++|+|+|+    ++++|      ..+|+++|||||++||+
T Consensus       193 -----------------~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~------~~~p~vaViTNI~~DHl  249 (535)
T 2wtz_A          193 -----------------ALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVD------GTRFAVGAFTNLSRDHL  249 (535)
T ss_dssp             -----------------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTT------TCCEEEEEECCCCSCCT
T ss_pred             -----------------CCccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccc------cCCcCEEEEcCCChHHh
Confidence                             46778888888764 6778999999999996    34433      34589999999999999


Q ss_pred             hhcCCCHHHHHHHHhccccC-----CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCC-CCcc
Q 017061          231 AALGGSLETIAMAKSGIIKY-----GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDR-PCQS  304 (378)
Q Consensus       231 d~lG~tle~ia~~Ka~Iik~-----~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (378)
                      |+|| |+|+|+++|++||++     ++.+|+| .|||....++.. +   . ++++|+...            .. ++..
T Consensus       250 d~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln-~Dd~~~~~~~~~-~---~-~v~~~g~~~------------~~~d~~~  310 (535)
T 2wtz_A          250 DFHP-SMADYFEAKASLFDPDSALRARTAVVC-IDDDAGRAMAAR-A---A-DAITVSAAD------------RPAHWRA  310 (535)
T ss_dssp             TTSS-SHHHHHHHHHTTTCTTSTTCCSEEEEE-CSSHHHHHHHHH-H---S-SCEEEESSS------------SCCSEEE
T ss_pred             hhcC-CHHHHHHHHHHHhccccccCCCeEEEE-CCCHHHHHHHHh-c---C-CEEEEecCC------------CcCcEEE
Confidence            9998 999999999999984     4578999 578876555432 1   2 566664211            11 2222


Q ss_pred             cceeEe-ecc-cccccc--cc-cccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061          305 CDIIVQ-AER-DLKLSI--EL-LDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       305 ~~~~~~-~~~-~~~~~~--~~-~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~  377 (378)
                      .++... ..+ .+.+..  +. ..+.+|++|.||++|+++|++++..|     |++.+.|++||++|. |||||+.+.
T Consensus       311 ~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~~~-~~gR~e~v~  382 (535)
T 2wtz_A          311 TDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTV-----GVSPEQAVPGLREIR-VPGRLEQID  382 (535)
T ss_dssp             EEEEEETTTEEEEEEECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCC-CTTSSEECC
T ss_pred             EEEEEcCCCCeEEEEEeCCceEEEEEeCCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCC-CCCceEEEE
Confidence            222211 111 111111  11 35889999999999999999999999     999999999999997 999998763

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=3.9e-38  Score=318.47  Aligned_cols=231  Identities=19%  Similarity=0.230  Sum_probs=161.7

Q ss_pred             CChHHHHHHHHHhCCCC---CCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHH
Q 017061           75 FDLGRMNRLMDRLGNPH---SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKA  151 (378)
Q Consensus        75 ~~L~r~~~ll~~lg~p~---~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~  151 (378)
                      +.+++++++|..|+.+.   .+.++||||||||||||+.||++||+++| +++ +|+   .+++++     +|.|.+   
T Consensus        78 i~v~~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~---g~~n~~-----ig~p~t---  144 (452)
T 1gg4_A           78 LIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA---GNLNND-----IGVPMT---  144 (452)
T ss_dssp             EEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC---TTCCST-----THHHHH---
T ss_pred             EEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc---ccccCC-----cchhHH---
Confidence            44678999999988775   35789999999999999999999999999 554 443   234332     232221   


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcc---cccccccCCCcEEEEccCChh
Q 017061          152 LNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD---ATNIISSSGLAASVITTIGEE  228 (378)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D---~t~~~~~~~p~vaVITNI~~D  228 (378)
                                              .|          -.+.++|++|+|+|+++++|   .++++   +|+++|||||++|
T Consensus       145 ------------------------~~----------~~~~~~d~~VlE~g~~~~~~~~~~~~~~---~p~vaviTNI~~D  187 (452)
T 1gg4_A          145 ------------------------LL----------RLTPEYDYAVIELGANHQGEIAWTVSLT---RPEAALVNNLAAA  187 (452)
T ss_dssp             ------------------------HT----------TCCTTCSEEEEECCCSSSSHHHHHHHHH---CCSEEEECCCC--
T ss_pred             ------------------------HH----------cCCCCCcEEEEEeCCCCcchHHHHhCcc---CCCEEEECCCChH
Confidence                                    11          12467999999999999988   45555   4789999999999


Q ss_pred             hHhhcCCCHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCccc
Q 017061          229 HTAALGGSLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSC  305 (378)
Q Consensus       229 Hld~lG~tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (378)
                      |+|+|| |+|+|+++|++||+   +++++|+| .|||....+..  +.. ++++++|+....           ..++...
T Consensus       188 Hld~~g-t~e~~~~aK~~i~~~~~~~~~~V~n-~dd~~~~~~~~--~~~-~~~~~~~g~~~~-----------~~d~~~~  251 (452)
T 1gg4_A          188 HLEGFG-SLAGVAKAKGEIFSGLPENGIAIMN-ADNNDWLNWQS--VIG-SRKVWRFSPNAA-----------NSDFTAT  251 (452)
T ss_dssp             -------CHHHHHHHHHGGGGGCCTTCEEEEE-TTBCCHHHHHH--HHT-TSEEEEECSSCT-----------TCSBEEE
T ss_pred             HhhhcC-CHHHHHHHHHHHHhhcccCCEEEEe-CCcHHHHHHHH--hhc-CCCEEEEeCCCC-----------CCcEEEE
Confidence            999998 99999999999997   67889999 57887665432  333 568888753110           0112111


Q ss_pred             ceeEeecc-ccccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          306 DIIVQAER-DLKLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       306 ~~~~~~~~-~~~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      ++.....+ .+.+.  .+...+.+|++|.||++|+++|++++..+     |++.+.|+++|++|.++||||+.+
T Consensus       252 ~~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~  320 (452)
T 1gg4_A          252 NIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSV-----GATLDAIKAGLANLKAVPGRLFPI  320 (452)
T ss_dssp             EEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCCCCTTSSEEE
T ss_pred             EEEEcCCceEEEEEECCCEEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCceEE
Confidence            11111111 11111  12235789999999999999999999999     999999999999998899999875

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*

Probab=100.00  E-value=8.3e-38  Score=316.22  Aligned_cols=224  Identities=17%  Similarity=0.198  Sum_probs=163.7

Q ss_pred             hHHHHHHHHHhCCCCC---CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHH
Q 017061           77 LGRMNRLMDRLGNPHS---KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN  153 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~---~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~  153 (378)
                      .++++++|..|+.+..   +.++||||||||||||+.||+++|+++|+ +  ++|||  +++++     +|.|++     
T Consensus        80 v~~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~-~--~~s~g--~~n~~-----ig~p~t-----  144 (454)
T 2am1_A           80 VDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK-T--YKTQG--NYNNE-----IGLPYT-----  144 (454)
T ss_dssp             CSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC-E--EECCT--TCCST-----THHHHH-----
T ss_pred             ECCHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC-E--eecCC--ccCcc-----cchHHH-----
Confidence            4567777777766543   67899999999999999999999999995 3  67887  44432     233221     


Q ss_pred             HHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcc---cccccccCCCcEEEEccCChhhH
Q 017061          154 CLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD---ATNIISSSGLAASVITTIGEEHT  230 (378)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D---~t~~~~~~~p~vaVITNI~~DHl  230 (378)
                                            .|          -.+.++|++|+|+|+++++|   .+++++   |+++|||||++||+
T Consensus       145 ----------------------~~----------~~~~~~d~~VlE~g~~~~~~~~~~~~~~~---p~vaviTNi~~DHl  189 (454)
T 2am1_A          145 ----------------------VL----------HMPEGTEKLVLEMGQDHLGDIHLLSELAR---PKTAIVTLVGEAHL  189 (454)
T ss_dssp             ----------------------HH----------TCCTTCCEEEEECCCSSTTHHHHHHHHHC---CSEEEECCCCCSSC
T ss_pred             ----------------------Hh----------cCCCCCcEEEEEcCCCCcchHHHHhCccC---CCEEEEcCCchHhh
Confidence                                  11          12468999999999999998   555554   78999999999999


Q ss_pred             hhcCCCHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccce
Q 017061          231 AALGGSLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDI  307 (378)
Q Consensus       231 d~lG~tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (378)
                      |+|| |+|+|+++|++||+   +++++|+| .|| ...    ..+.. ++++++|+...            ..++  .++
T Consensus       190 d~~g-t~e~~a~aK~~i~~~~~~~~~~V~n-~dd-~~~----~~~~~-~~~~~~~g~~~------------~~d~--~~i  247 (454)
T 2am1_A          190 AFFK-DRSEIAKGKMQIADGMASGSLLLAP-ADP-IVE----DYLPI-DKKVVRFGQGA------------ELEI--TDL  247 (454)
T ss_dssp             TTCC-CHHHHHHHHGGGGTTCCTTCEEEEE-SCG-GGG----GGCCS-SSEEEEESTTS------------SBCE--EEE
T ss_pred             hhcC-CHHHHHHHHHHHHhhcccCCEEEEE-cHH-HHH----HHHhc-CCcEEEEeCCC------------CCce--eee
Confidence            9998 99999999999997   57889999 465 442    22323 56788775211            0111  111


Q ss_pred             eEeecc-cccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061          308 IVQAER-DLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN  377 (378)
Q Consensus       308 ~~~~~~-~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~  377 (378)
                      .....+ .+.+......+.+|++|.||++|+++|++++..+     |++.+.|+++|++|.+|||||+.+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~~  313 (454)
T 2am1_A          248 VERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQE-----GVSEEQIRLAFQHLELTRNRTEWKK  313 (454)
T ss_dssp             EECSSCEEEEETTCSSEEEESSCCHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCCCCCCSCEEC
T ss_pred             EEeCCceEEEEEecCcEEEecCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCccCCeeEEE
Confidence            111111 1111110015889999999999999999999999     9999999999999988999998753

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=100.00  E-value=1.3e-34  Score=291.68  Aligned_cols=204  Identities=18%  Similarity=0.114  Sum_probs=152.2

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.++||||||||||||++||+++|+++|++++++++              +|.|+++                       
T Consensus       103 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gn--------------ig~~~~~-----------------------  145 (439)
T 2x5o_A          103 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN--------------IGLPALM-----------------------  145 (439)
T ss_dssp             CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEES--------------SSBCHHH-----------------------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecc--------------cCHHHHH-----------------------
Confidence            368999999999999999999999999999987542              3666642                       


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~  252 (378)
                                    .+ ..+.|++|+|+|+ +.+|.++.++   |+++|||||++||+|+||+|+|+|+++|++|+++++
T Consensus       146 --------------~~-~~~~d~~VlE~~~-~~l~~~~~~~---p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~  206 (439)
T 2x5o_A          146 --------------LL-DDECELYVLELSS-FQLETTSSLQ---AVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK  206 (439)
T ss_dssp             --------------HC-CTTCCEEEEECCH-HHHHTCCCCC---CSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCS
T ss_pred             --------------Hh-CCCCCEEEEECCc-hhhcccccCC---CCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCC
Confidence                          11 1346999999999 4577777654   789999999999999997799999999999999999


Q ss_pred             eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchh
Q 017061          253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNH  332 (378)
Q Consensus       253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~h  332 (378)
                      ++|+| .|||.+..++.    . ++++++|+....+.  ..+....+      .+.+. .+    ......+.++++|.|
T Consensus       207 ~~V~n-~dd~~~~~~~~----~-~~~~~~~g~~~~~~--~~~~~~~~------~~~~~-~~----~~~~~~~~l~l~G~h  267 (439)
T 2x5o_A          207 VCVVN-ADDALTMPIRG----A-DERCVSFGVNMGDY--HLNHQQGE------TWLRV-KG----EKVLNVKEMKLSGQH  267 (439)
T ss_dssp             EEEEE-TTCGGGSCSCC----C-SSCCEEECSSSSSE--EEEEETTE------EEEEE-TT----EEEEEGGGCSCCSHH
T ss_pred             EEEEe-CCCHHHHHHhh----c-CCcEEEEeCCCcCc--CcEEEECC------EEEEe-CC----cEEEeehhcCCCCHH
Confidence            99999 57786543321    1 45677765211000  00000000      01110 00    000113678999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          333 QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       333 q~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      |++|+++|++++..+     |++.+.|+++|++|.+||||++.+
T Consensus       268 n~~NalaA~a~~~~l-----gi~~~~i~~~L~~f~~~~gR~e~~  306 (439)
T 2x5o_A          268 NYTNALAALALADAA-----GLPRASSLKALTTFTGLPHRFEVV  306 (439)
T ss_dssp             HHHHHHHHHHHHHHT-----TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred             HHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            999999999999999     999999999999998899999875

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=100.00  E-value=7e-34  Score=289.02  Aligned_cols=219  Identities=18%  Similarity=0.118  Sum_probs=153.7

Q ss_pred             hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (378)
                      +.++..+++.++    +.++||||||||||||++||++||+++|+++.+.             ++  |...+...     
T Consensus       105 l~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~-------------ig--g~~~~~~~-----  160 (475)
T 1p3d_A          105 IQRAQMLAEIMR----FRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFV-------------NG--GLVKSAGK-----  160 (475)
T ss_dssp             EEHHHHHHHHHH----TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE-------------EE--EEETTTTE-----
T ss_pred             EEHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEE-------------EC--Cccccccc-----
Confidence            455655555554    2589999999999999999999999999974321             22  22111000     


Q ss_pred             HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (378)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t  236 (378)
                                                    .....++|++|+|+|+   +|.++..  .+|+++|||||++||+|+||+|
T Consensus       161 ------------------------------~~~~~~~d~~VlE~~~---~~~~~~~--~~p~vaviTNI~~DHld~~G~t  205 (475)
T 1p3d_A          161 ------------------------------NAHLGASRYLIAEADE---SDASFLH--LQPMVSVVTNMEPDHMDTYEGD  205 (475)
T ss_dssp             ------------------------------EEECCSSSEEEEECCC---TTSGGGG--CCCSEEEECCCCCCSGGGGTTC
T ss_pred             ------------------------------ccccCCCCEEEEEecC---CcCcccc--ccCCEEEEcCCChhhhhhhcCC
Confidence                                          0012468999999984   4455543  3589999999999999999779


Q ss_pred             HHHHHHHHhccc---cCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061          237 LETIAMAKSGII---KYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER  313 (378)
Q Consensus       237 le~ia~~Ka~Ii---k~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (378)
                      +|+|+++|+.++   ++++++|+| .|||.+..++..    .++++++|+...            ..++...++.....+
T Consensus       206 ~e~ia~aK~~i~~~~~~~~~~V~n-~dd~~~~~~~~~----~~~~~~~~g~~~------------~~d~~~~~~~~~~~~  268 (475)
T 1p3d_A          206 FEKMKATYVKFLHNLPFYGLAVMC-ADDPVLMELVPK----VGRQVITYGFSE------------QADYRIEDYEQTGFQ  268 (475)
T ss_dssp             HHHHHHHHHHHHTTSCTTCEEEEE-TTCHHHHHHHHH----HCSEEEEEESST------------TCSEEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEE-CCCHHHHHHHHh----cCCCEEEEecCC------------CCcEEEEEEEEcCCc
Confidence            999999988876   567889999 578876555433    356788775211            111211111111111


Q ss_pred             -cccccc---cccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          314 -DLKLSI---ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       314 -~~~~~~---~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                       .+.+..   ....+.++++|.||++|+++|++++..+     |++.+.|+++|++|.+||||++.+
T Consensus       269 ~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l-----gi~~~~i~~~L~~f~~~~gR~e~v  330 (475)
T 1p3d_A          269 GHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEE-----GIANEAILEALADFQGAGRRFDQL  330 (475)
T ss_dssp             EEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred             eEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence             111110   1125789999999999999999999999     999999999999998899999865

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=100.00  E-value=2.6e-33  Score=286.00  Aligned_cols=219  Identities=20%  Similarity=0.143  Sum_probs=153.7

Q ss_pred             hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (378)
                      +.++..+.+.++    +.++||||||||||||++||++||+++|+++.+.             ++  |...+...     
T Consensus       106 l~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~-------------ig--g~~~~~~~-----  161 (491)
T 2f00_A          106 IRRAEMLAELMR----FRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFV-------------NG--GLVKAAGV-----  161 (491)
T ss_dssp             EEHHHHHHHHHT----TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE-------------EE--EEETTTTE-----
T ss_pred             EEHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEE-------------EC--Ceeccccc-----
Confidence            455655555554    3589999999999999999999999999974321             12  22111000     


Q ss_pred             HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (378)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t  236 (378)
                                                    .....++|++|+|+|+   +|.++..  .+|+++|||||++||+|+||+|
T Consensus       162 ------------------------------~~~~~~~d~~VlE~~~---~~~~~~~--~~p~vaviTNI~~DHld~~G~t  206 (491)
T 2f00_A          162 ------------------------------HARLGHGRYLIAEADE---SDASFLH--LQPMVAIVTNIEADHMDTYQGD  206 (491)
T ss_dssp             ------------------------------EEECCSSSEEEEECCC---TTSGGGG--CCCSEEEECCCCSCSGGGTTTC
T ss_pred             ------------------------------cccCCCCCEEEEEeCC---Cccchhc--CCCCEEEEcCCChhhhhhhcCC
Confidence                                          0112468999999984   4556543  3589999999999999999779


Q ss_pred             HHHHHHHHhccc---cCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061          237 LETIAMAKSGII---KYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER  313 (378)
Q Consensus       237 le~ia~~Ka~Ii---k~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (378)
                      +|+|+++|+.++   ++++++|+| .|||.+..+    +.+.++++++|+...            ..++...++.....+
T Consensus       207 ~e~ia~aK~~i~~~~~~~~~~V~n-~dd~~~~~~----~~~~~~~~~~~g~~~------------~~d~~~~~~~~~~~~  269 (491)
T 2f00_A          207 FENLKQTFINFLHNLPFYGRAVMC-VDDPVIREL----LPRVGRQTTTYGFSE------------DADVRVEDYQQIGPQ  269 (491)
T ss_dssp             HHHHHHHHHHHHTTSCTTCEEEEE-TTSHHHHHH----GGGCCSEEEEEESST------------TCSEEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEE-CCCHHHHHH----HHhcCCcEEEEeCCC------------CCCEEEEEEEEcCCc
Confidence            999999998877   567889999 578865443    333456888775211            111221111111111


Q ss_pred             -cccccc---cccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          314 -DLKLSI---ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       314 -~~~~~~---~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                       .+.+..   ....+.++++|.||++|+++|++++..+     |++.+.|+++|++|.+||||++.+
T Consensus       270 ~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~f~~~~gR~e~v  331 (491)
T 2f00_A          270 GHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEE-----GIDDEAILRALESFQGTGRRFDFL  331 (491)
T ss_dssp             EEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred             eEEEEEECCceEEEEEEccchHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence             111110   1125789999999999999999999999     999999999999998899999875

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=100.00  E-value=1.8e-33  Score=284.25  Aligned_cols=203  Identities=19%  Similarity=0.129  Sum_probs=150.5

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||+++|+++|+++.+              .+++|.|++..                       
T Consensus       112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~--------------~Gnig~~~~~~-----------------------  154 (451)
T 3lk7_A          112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLL--------------AGNIGFPASEV-----------------------  154 (451)
T ss_dssp             SEEEEEECSSCHHHHHHHHHHHHHHTTCCEEE--------------EETSSSCHHHH-----------------------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEE--------------eeecChhhhhh-----------------------
Confidence            48999999999999999999999999998743              12246665320                       


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC---
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY---  250 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~---  250 (378)
                                   .....++|++|+|+|+++ +|.++.+   +|+++|||||++||+|+|| |+|+|+++|++|++.   
T Consensus       155 -------------~~~~~~~d~~VlE~~s~~-l~~~~~~---~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~  216 (451)
T 3lk7_A          155 -------------VQAANDKDTLVMELSSFQ-LMGVKEF---RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSS  216 (451)
T ss_dssp             -------------TTTCCTTCEEEEECCHHH-HTTCSSC---CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCT
T ss_pred             -------------hhcCCCCCEEEEECCccc-ccccccc---CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCC
Confidence                         011246899999999886 4666555   4789999999999999998 999999999999975   


Q ss_pred             CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCc
Q 017061          251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIG  330 (378)
Q Consensus       251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G  330 (378)
                      ++.+|+| .|||.+..    .+++.++++++|+.....   .+.....+      .+.+.  +    ......+.++++|
T Consensus       217 ~~~~V~n-~dd~~~~~----~~~~~~~~~~~~g~~~~~---~~~~~~~~------~~~~~--~----~~~~~~~~l~l~G  276 (451)
T 3lk7_A          217 SDFLVLN-FNQGISKE----LAKTTKATIVPFSTTEKV---DGAYVQDK------QLFYK--G----ENIMSVDDIGVPG  276 (451)
T ss_dssp             TSEEEEE-TTSHHHHH----HHTTCSSEEEEEESSSCC---SSEEEETT------EEEET--T----EEEEEGGGSSSCS
T ss_pred             CCEEEEE-CCcHHHHH----HHhhcCCeEEEEccCCCc---CCEEEECC------EEEEC--C----cEEeeccccCCCc
Confidence            4569999 57886543    344567788887632100   00000000      01110  0    0011247899999


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          331 NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       331 ~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      .||++|+++|++++..+     |++.+.|+++|++|.++|||++.+
T Consensus       277 ~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~f~~~~gR~e~v  317 (451)
T 3lk7_A          277 SHNVENALATIAVAKLA-----GISNQVIRETLSNFGGVKHRLQSL  317 (451)
T ss_dssp             HHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred             HHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCcEEEE
Confidence            99999999999999999     999999999999998899999865

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=100.00  E-value=2.2e-33  Score=272.31  Aligned_cols=228  Identities=15%  Similarity=0.066  Sum_probs=150.4

Q ss_pred             hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (378)
                      +.++..+.+.+.   +..++|+||||||||||+.||+++|+++|++++....--..+++....   +|.|.+.       
T Consensus        94 ~~~~e~~~~~~~---~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~---~~~p~~~-------  160 (326)
T 3eag_A           94 ISGPQWLSENVL---HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSAR---LPQTPRQ-------  160 (326)
T ss_dssp             EEHHHHHHHHTG---GGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEE---CCCCCSS-------
T ss_pred             EeHHHHHHHHHh---cCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCccee---cCCcccc-------
Confidence            344544444332   346899999999999999999999999999886432110112211111   1333220       


Q ss_pred             HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccc--cCCCcEEEEccCChhhHhhcC
Q 017061          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTAALG  234 (378)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~--~~~p~vaVITNI~~DHld~lG  234 (378)
                                                     ....+.|++|+|+|+.+......+.+  ..+|+++|||||++||+|+||
T Consensus       161 -------------------------------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~g  209 (326)
T 3eag_A          161 -------------------------------DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFA  209 (326)
T ss_dssp             -------------------------------CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSS
T ss_pred             -------------------------------ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcC
Confidence                                           23467899999999865432222211  236899999999999999998


Q ss_pred             CCHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEee
Q 017061          235 GSLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQA  311 (378)
Q Consensus       235 ~tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (378)
                       |+|+|+++|++|++   +++.+|+| .|||....++.+   ...+++++|+.. .+.....  ...  +..   +.+..
T Consensus       210 -s~e~y~~aK~~i~~~~~~~~~~V~n-~Dd~~~~~~~~~---~~~~~~~~~g~~-~d~~~~~--~~~--~g~---f~~~~  276 (326)
T 3eag_A          210 -DLGAIQTQFHYLVRTVPSEGLIVCN-GRQQSLQDTLDK---GCWTPVEKFGTE-HGWQAGE--ANA--DGS---FDVLL  276 (326)
T ss_dssp             -SHHHHHHHHHHHHTTSCTTSEEEEE-SSCHHHHHHHTT---CCCSCEEEESSS-SSEEEEE--ECT--TSC---EEEEE
T ss_pred             -CHHHHHHHHHHHHHhCCCCCEEEEe-CCCHHHHHHHhh---ccCCCEEEECCC-CcEEEEE--ecC--CcE---EEEEE
Confidence             99999999999997   57889999 688876554332   134567777521 0000000  000  000   11110


Q ss_pred             cccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCcee
Q 017061          312 ERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAE  372 (378)
Q Consensus       312 ~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR  372 (378)
                      .+     .....+.++++|+||++|+++|++++..+     |++.+.|+++|++|. .+.|
T Consensus       277 ~~-----~~~~~~~l~l~G~hNv~NalaAia~a~~l-----Gi~~~~i~~~L~~f~-gv~R  326 (326)
T 3eag_A          277 DG-----KTAGRVKWDLMGRHNRMNALAVIAAARHV-----GVDIQTACEALGAFK-NVKR  326 (326)
T ss_dssp             TT-----EEEEEECCCCCSHHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHTCC-CEEC
T ss_pred             CC-----ceEEEEEecCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCC-CCCC
Confidence            00     01235789999999999999999999999     999999999999984 4433

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=3.4e-33  Score=283.54  Aligned_cols=198  Identities=18%  Similarity=0.108  Sum_probs=147.4

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccc-eEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIR-ERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN  171 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~-eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~  171 (378)
                      +.++|+||||||||||++||++||+++|++++.++||++.+++ ++++++                              
T Consensus       113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------  162 (469)
T 1j6u_A          113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------  162 (469)
T ss_dssp             CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence            4689999999999999999999999999999999999987666 555432                              


Q ss_pred             CCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCC
Q 017061          172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG  251 (378)
Q Consensus       172 ~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~  251 (378)
                                          +.| +|+|+|+.+   .++.  ..+|+++|||||++||+|+||+|+|+|+++|..++...
T Consensus       163 --------------------~~~-~V~E~~~~~---~~~~--~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~  216 (469)
T 1j6u_A          163 --------------------NGP-VVYELDESE---EFFS--EFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNT  216 (469)
T ss_dssp             --------------------SSC-EEEEECTTS---GGGG--GCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTC
T ss_pred             --------------------CCC-EEEECCCcc---Cccc--cccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhC
Confidence                                246 999999764   4443  23579999999999999999966999999998877543


Q ss_pred             CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc--cccc--cc-ccccccc
Q 017061          252 RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER--DLKL--SI-ELLDVKL  326 (378)
Q Consensus       252 ~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~-~~~~i~l  326 (378)
                      ..+|+| .|||.+..        .  ++++|+...             .++.. ++.....+  .+.+  .. ....+++
T Consensus       217 ~~~V~n-~dd~~~~~--------~--~~~~~g~~~-------------~d~~~-~~~~~~~~~~~f~~~~~~~~~~~~~l  271 (469)
T 1j6u_A          217 DLVVTF-AEDELTSH--------L--GDVTFGVKK-------------GTYTL-EMRSASRAEQKAMVEKNGKRYLELKL  271 (469)
T ss_dssp             SEEEEE-TTCTTTGG--------G--CSEEECSSS-------------SSEEE-EEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred             CEEEEE-CCChhhcc--------c--eEEEEECCC-------------ceEEE-EEEECCCCCEEEEEEECCeEEEEEEe
Confidence            378888 46775421        1  456654210             11111 11111000  0111  01 1125789


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      +++|.||++|+++|++++..+     |++.+.|+++|++|.+||||++.+
T Consensus       272 ~l~G~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~f~g~~gR~e~v  316 (469)
T 1j6u_A          272 KVPGFHNVLNALAVIALFDSL-----GYDLAPVLEALEEFRGVHRRFSIA  316 (469)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred             cCcCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence            999999999999999999999     999999999999998899999876

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=100.00  E-value=5.7e-33  Score=283.56  Aligned_cols=206  Identities=17%  Similarity=0.136  Sum_probs=147.6

Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (378)
Q Consensus        94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~  173 (378)
                      .++|+||||||||||++||+++|+++|+++...+..         .+|.+|.+.                          
T Consensus       122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg---------~~~~~g~~~--------------------------  166 (494)
T 4hv4_A          122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGG---------LVKAAGTHA--------------------------  166 (494)
T ss_dssp             SEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEE---------EETTTTEEE--------------------------
T ss_pred             CCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECC---------ccccccccc--------------------------
Confidence            479999999999999999999999999864332111         112122211                          


Q ss_pred             cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC---
Q 017061          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY---  250 (378)
Q Consensus       174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~---  250 (378)
                                     ...+.|++|+|+|+++.   +..  ..+|+++|||||++||+|+||+|+|+|+++|++|++.   
T Consensus       167 ---------------~~~~~d~~VlE~~e~~~---s~~--~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~  226 (494)
T 4hv4_A          167 ---------------RLGSSRYLIAEADESDA---SFL--HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPF  226 (494)
T ss_dssp             ---------------ECCSSSEEEEECCCGGG---GGG--GCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCT
T ss_pred             ---------------ccCCCcEEEEEcccccc---ccc--cccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCC
Confidence                           11458999999996543   322  3468999999999999999977999999999999964   


Q ss_pred             CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--c-ccccccc
Q 017061          251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--I-ELLDVKL  326 (378)
Q Consensus       251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~i~l  326 (378)
                      ++.+|+| .|||.+..+    +++..+++++|+..            ...++...++.....+ .+.+.  . ...++.+
T Consensus       227 ~g~~V~n-~dd~~~~~~----~~~~~~~~~~~g~~------------~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l  289 (494)
T 4hv4_A          227 YGRAVMC-IDDPVVREL----LPRVGRHITTYGFS------------DDADVQIASYRQEGPQGHFTLRRQDKPLIEVTL  289 (494)
T ss_dssp             TCEEEEE-TTSHHHHHH----GGGCCSCEEEEESS------------TTCSEEEEEEEEETTEEEEEEECTTSCCEEEEE
T ss_pred             CCEEEEE-CCCHHHHHH----HHhcCCCEEEEecC------------CCCceEEEEEEEeCCEEEEEEEECCceEEEEEe
Confidence            5788999 578865443    33445677777521            1122222222211111 11111  1 1335789


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      +++|.||++|+++|++++..+     |++.+.|+++|++|.++|||++.+
T Consensus       290 ~l~G~hnv~NalaAia~a~~l-----gi~~~~i~~~L~~f~g~~~R~e~v  334 (494)
T 4hv4_A          290 NAPGRHNALNAAAAVAVATEE-----GIEDEDILRALVGFQGTGRRFDFL  334 (494)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHHCCCBTTSSEEE
T ss_pred             cCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCccEEe
Confidence            999999999999999999999     999999999999998899999865

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=99.97  E-value=5.4e-32  Score=278.18  Aligned_cols=234  Identities=16%  Similarity=0.119  Sum_probs=145.0

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEee--------eCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHH
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY--------TSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLD  164 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~--------tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~  164 (378)
                      ..++|+||||||||||++||++||+++|++++.+        +||.  +++     +++|.+...               
T Consensus       121 ~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~~T~~--nln-----~~ig~~~~~---------------  178 (524)
T 3hn7_A          121 SRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDT--NLQ-----QVFAHSSYL---------------  178 (524)
T ss_dssp             GSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCH--HHH-----HHTTSSEEC---------------
T ss_pred             cCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccccCch--hhh-----hhhhhHHhh---------------
Confidence            4689999999999999999999999999988642        2221  000     001211100               


Q ss_pred             HHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccc--cCCCcEEEEccCChhhHhhcCCCHHHHHH
Q 017061          165 EAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTAALGGSLETIAM  242 (378)
Q Consensus       165 ~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~--~~~p~vaVITNI~~DHld~lG~tle~ia~  242 (378)
                           .....+.           ..+.++|++|+|+|+.+......+..  ..+|+++|||||++||+|+|| |+|+|++
T Consensus       179 -----~~~~~~~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~  241 (524)
T 3hn7_A          179 -----GTEKDDS-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQT  241 (524)
T ss_dssp             -----CCCCCSS-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHH
T ss_pred             -----CCCcccc-----------cccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHH
Confidence                 0000000           01234689999999976543333322  246899999999999999997 8999999


Q ss_pred             HHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccc---hhccc----c-ccCCCCCCcccceeEee
Q 017061          243 AKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIR---ATING----L-SMFNDRPCQSCDIIVQA  311 (378)
Q Consensus       243 ~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~---~~~~~----~-~~~~~~~~~~~~~~~~~  311 (378)
                      +|+.|++   +++.+|+| .|||....++..   ...+++++|+.....   +..+.    . .+....++...++.  .
T Consensus       242 aK~~i~~~~~~~g~~VlN-~DD~~~~~~~~~---~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~--~  315 (524)
T 3hn7_A          242 QFHHMVRMIPSTGKIIMP-AATISLEDTLAK---GVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELIS--A  315 (524)
T ss_dssp             HHHHHHTTSCTTSEEEEE-SSCHHHHHHHHT---CCCSCEEEEEEEC-------------------CCCSEEEEEEE--T
T ss_pred             HHHHHHHhCCCCCEEEEE-CCCHHHHHHHHh---ccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEE--C
Confidence            9999996   56789999 688876544322   134567776531000   00000    0 00001222221111  1


Q ss_pred             cc-ccccc--cc---ccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061          312 ER-DLKLS--IE---LLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  376 (378)
Q Consensus       312 ~~-~~~~~--~~---~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  376 (378)
                      .+ .+.+.  ..   ...+.++++|.||++|+++|++++..+     |++.+.|+++|++|.++|||++.+
T Consensus       316 ~g~~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~  381 (524)
T 3hn7_A          316 DGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNI-----GVSVKTACAALSAFAGIKRRMELI  381 (524)
T ss_dssp             TTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred             CceEEEEEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCceEEEE
Confidence            11 11111  11   245789999999999999999999999     999999999999998899999875

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=96.17  E-value=0.018  Score=55.50  Aligned_cols=160  Identities=14%  Similarity=0.091  Sum_probs=85.8

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL  169 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~  169 (378)
                      +.+.|.|+||   -||++|+..|...|++.|++++.+.|-.-. .    .+...|.+++.........+++..       
T Consensus       151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg-~----~~~~~gi~~Dav~~df~aG~ve~~-------  218 (349)
T 2obn_A          151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG-V----MLEGDGVALDAVRVDFAAGAVEQM-------  218 (349)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH-H----HHHSCSCCGGGSBHHHHHHHHHHH-------
T ss_pred             cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh-h----hhhcCCcchhHHHHHHHhhhHHHH-------
Confidence            3678999999   799999999999999999999986543211 0    111113344321111111222211       


Q ss_pred             cCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcc-----cccccccCCCc-EEEEccCChhhHhhcC----CCHHH
Q 017061          170 ENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD-----ATNIISSSGLA-ASVITTIGEEHTAALG----GSLET  239 (378)
Q Consensus       170 ~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D-----~t~~~~~~~p~-vaVITNI~~DHld~lG----~tle~  239 (378)
                                      ..-..++.||+++|= .|+...     ...++...+|+ +.++...++-|++-|-    .++++
T Consensus       219 ----------------~~~~~~~~d~vlVEG-qGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~  281 (349)
T 2obn_A          219 ----------------VMRYGKNYDILHIEG-QGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPE  281 (349)
T ss_dssp             ----------------HHHHTTTCSEEEECC-CCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHH
T ss_pred             ----------------HHHhccCCCEEEEeC-CCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHH
Confidence                            112345789999995 333210     12344445566 6677777776662221    23443


Q ss_pred             HHHHHhcc---cc--CCCe---EEEcCC--CChhHHHHHHHHHHhhCCeEEE
Q 017061          240 IAMAKSGI---IK--YGRP---LVLGGP--FLPHIEHILRDEASLMCSQVVS  281 (378)
Q Consensus       240 ia~~Ka~I---ik--~~~~---~V~~~~--d~~~~~~vl~~~a~~~~~~~~~  281 (378)
                      ....-..+   -.  ++..   +++|..  ++.+..+.++...+..+.|++.
T Consensus       282 ~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv~d  333 (349)
T 2obn_A          282 VIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTD  333 (349)
T ss_dssp             HHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCEEC
T ss_pred             HHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
Confidence            33322222   11  2211   456622  2234555666677777888764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.21  E-value=0.92  Score=43.28  Aligned_cols=47  Identities=26%  Similarity=0.269  Sum_probs=37.0

Q ss_pred             HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.+++.+-....+.++|+|+|.  .||||++.-|+..|...|++|+++
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi  113 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL  113 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence            44556665433456779999996  789999999999999999999875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.96  E-value=0.99  Score=44.68  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=30.4

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      .++|.|+|.  .|||||+.-|+..|...|++|.++..
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~  136 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS  136 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            468999986  68999999999999999999988643

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.64  E-value=0.032  Score=52.88  Aligned_cols=34  Identities=26%  Similarity=0.214  Sum_probs=31.1

Q ss_pred             CCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061           93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        93 ~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ..|+|+|+|  --|||||+.-|+..|.+.|+||+++
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI   82 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI   82 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence            568999995  5799999999999999999999986

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.34  E-value=0.58  Score=46.26  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=29.9

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ..+|.++|-  .|||||+..|+..|...|++|.+.+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~  132 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA  132 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            468999986  5799999999999999999998754

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=94.14  E-value=0.051  Score=48.96  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061           92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      .+++.|-||||   .|||+++..|...|++.|++|+.|-
T Consensus         2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K   40 (228)
T 3of5_A            2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK   40 (228)
T ss_dssp             TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence            35688999998   7999999999999999999999874

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=93.92  E-value=0.3  Score=52.40  Aligned_cols=35  Identities=11%  Similarity=0.014  Sum_probs=31.5

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHc-----CCceEeee
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAE-----GYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~-----G~~vg~~t  127 (378)
                      ..+.|-|+||   .|||+++.-|..+|+..     |++|+.|-
T Consensus        33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK   75 (831)
T 4a0g_A           33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK   75 (831)
T ss_dssp             SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence            4678999998   79999999999999999     99999874

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=93.09  E-value=0.19  Score=48.37  Aligned_cols=38  Identities=32%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPH  130 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~  130 (378)
                      +.+.|.|+||   -|||+|+..|...|++.|++++.+.+..
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgq  208 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQ  208 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSH
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCc
Confidence            4678999998   7999999999999999999999877653

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=92.80  E-value=0.099  Score=46.04  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=28.8

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.|+++   .||||++.-|+..|.+.|+||.++
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~   36 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            57888876   789999999999999999999885

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=92.79  E-value=0.14  Score=44.07  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      .+++|.|+|.  .||||++..|...|...|++|+.+.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            4679999997  4999999999999999999998875

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=92.74  E-value=0.12  Score=47.43  Aligned_cols=36  Identities=31%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061           92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      .+++.|-||||   .|||+++..|...|++.|++|+.|-
T Consensus        24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK   62 (251)
T 3fgn_A           24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK   62 (251)
T ss_dssp             SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            46789999998   5999999999999999999999874

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=92.44  E-value=0.13  Score=46.74  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=31.8

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ..+.|-||||   .|||+++..|...|++.|++|+.|-
T Consensus        20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK   57 (242)
T 3qxc_A           20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK   57 (242)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence            4578999999   7999999999999999999999874

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=92.36  E-value=0.14  Score=44.26  Aligned_cols=33  Identities=18%  Similarity=0.402  Sum_probs=28.9

Q ss_pred             CcEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +++|.|++   -.||||++..|+..|...|++|.++
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli   36 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV   36 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            36888884   4789999999999999999999875

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=91.71  E-value=0.4  Score=44.10  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             CCCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           90 PHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        90 p~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +....++|.||++   -||||++.-|+..|.+.|+||.+.
T Consensus        78 ~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI  117 (271)
T 3bfv_A           78 PDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV  117 (271)
T ss_dssp             TTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence            3456789999976   699999999999999999999875

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=91.15  E-value=0.42  Score=44.61  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=31.1

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ...++|.||++   -||||++.-|+..|.+.|+||.++
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI  139 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI  139 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            45679999976   699999999999999999999875

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=90.99  E-value=0.98  Score=45.89  Aligned_cols=34  Identities=35%  Similarity=0.503  Sum_probs=30.7

Q ss_pred             cEEEEe-CC---CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           95 KTVHIA-GT---KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        95 ~~I~VT-GT---nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      +.|-|+ ||   -|||.+++-|..+|+..|++|..|-+
T Consensus         4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~   41 (545)
T 1s1m_A            4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKL   41 (545)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeec
Confidence            678888 76   89999999999999999999998865

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=90.51  E-value=0.47  Score=45.92  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHhCCC-----CCCCcEEEEe---CCCChHHHHHHHHHHHHH------cCCceEee
Q 017061           76 DLGRMNRLMDRLGNP-----HSKFKTVHIA---GTKGKGSTAAFLSSILRA------EGYSVGCY  126 (378)
Q Consensus        76 ~L~r~~~ll~~lg~p-----~~~~~~I~VT---GTnGKtSTt~~l~~iL~~------~G~~vg~~  126 (378)
                      .++.+..+...++.+     ....++|+|+   |-.||||++..|+..|..      .|++|.+.
T Consensus        85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli  149 (398)
T 3ez2_A           85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI  149 (398)
T ss_dssp             CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred             CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence            689998888887643     3457899999   457999999999999984      69999775

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=90.17  E-value=0.3  Score=43.82  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=28.3

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+++   .||||++..|+..|.+.|++|.++
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI   37 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence            57888755   689999999999999999999875

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=89.98  E-value=0.26  Score=43.78  Aligned_cols=34  Identities=18%  Similarity=0.100  Sum_probs=29.7

Q ss_pred             CCcEEEEeC---CCChHHHHHHHHHHHHHc-CCceEee
Q 017061           93 KFKTVHIAG---TKGKGSTAAFLSSILRAE-GYSVGCY  126 (378)
Q Consensus        93 ~~~~I~VTG---TnGKtSTt~~l~~iL~~~-G~~vg~~  126 (378)
                      ..++|.|++   -.||||++..|+..|.+. |++|.++
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli   40 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV   40 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence            457899985   478999999999999998 9999876

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=89.89  E-value=0.29  Score=44.29  Aligned_cols=34  Identities=29%  Similarity=0.290  Sum_probs=29.9

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +.++|.|+++   .||||++..|+..|...|++|.++
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   41 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV   41 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence            4578999865   579999999999999999999875

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=89.85  E-value=0.45  Score=44.21  Aligned_cols=36  Identities=14%  Similarity=0.161  Sum_probs=31.3

Q ss_pred             CCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        91 ~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ..+.++|.||++   -||||++.-|+..|.+.|++|.++
T Consensus        89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI  127 (286)
T 3la6_A           89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI  127 (286)
T ss_dssp             TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            345689999876   699999999999999999999875

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=89.81  E-value=0.34  Score=42.84  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=28.4

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.|+++   .||||++..|+..|.+.|++|.++
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            57888865   689999999999999999999876

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=89.67  E-value=1.6  Score=44.44  Aligned_cols=34  Identities=41%  Similarity=0.592  Sum_probs=31.0

Q ss_pred             cEEEEe-CC---CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           95 KTVHIA-GT---KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        95 ~~I~VT-GT---nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      +.|-|| ||   -|||.+++-|..+|+..|++|..|-+
T Consensus        13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~   50 (550)
T 1vco_A           13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKI   50 (550)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeec
Confidence            679999 76   79999999999999999999998865

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=89.13  E-value=0.32  Score=44.08  Aligned_cols=34  Identities=29%  Similarity=0.349  Sum_probs=29.1

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.++|.|++.   .||||++..|+..|. .|++|.++
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli   61 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI   61 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence            45689999865   679999999999999 99999875

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=88.84  E-value=0.53  Score=42.62  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .++|.|+++   .||||++..|+..|.+.|++|.++
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli   53 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL   53 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            468999865   679999999999999999999875

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=88.57  E-value=0.82  Score=42.01  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHhCCCCCCCcEEEEe-----CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           77 LGRMNRLMDRLGNPHSKFKTVHIA-----GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~~~~~I~VT-----GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +..+++++..-      .++|.|+     |-.||||++..|+..|...|++|.++
T Consensus        23 ~~~~~r~~~~~------~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli   71 (298)
T 2oze_A           23 LEELRRILSNK------NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI   71 (298)
T ss_dssp             HHHHHHHHHHH------CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHhcCC------CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence            34566666542      2345555     46899999999999999999999875

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=88.57  E-value=0.48  Score=43.51  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=28.0

Q ss_pred             CcEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +++|+|+  |-.||||++..|+..|.+.|++|.++
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli   36 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV   36 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            3566666  56899999999999999999999875

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=88.43  E-value=0.43  Score=43.12  Aligned_cols=32  Identities=34%  Similarity=0.363  Sum_probs=27.1

Q ss_pred             cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+  |-.||||++..|+..|.+.|++|.++
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli   35 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV   35 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence            456665  56899999999999999999999875

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=88.19  E-value=0.47  Score=43.72  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=28.3

Q ss_pred             cEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.|++   -.||||++..|+..|.+.|++|.++
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli   39 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI   39 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            5899985   5789999999999999999999774

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=88.09  E-value=1.3  Score=38.43  Aligned_cols=47  Identities=21%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +.++.+++.....+-.+|+|.|-  .||||++.+|..++...|.++|.+
T Consensus         8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v   56 (208)
T 3c8u_A            8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV   56 (208)
T ss_dssp             HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            44555555432234568999997  589999999999998767566653

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=87.75  E-value=0.5  Score=42.56  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=27.9

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.|+++   .||||++..|+..|.+.|++|.++
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV   37 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            57788754   689999999999999999999886

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=87.14  E-value=0.75  Score=44.60  Aligned_cols=52  Identities=12%  Similarity=0.155  Sum_probs=36.1

Q ss_pred             CChHHHHHHHHHhCCCC-----CCCcEEEEe---CCCChHHHHHHHHHHHH------HcCCceEee
Q 017061           75 FDLGRMNRLMDRLGNPH-----SKFKTVHIA---GTKGKGSTAAFLSSILR------AEGYSVGCY  126 (378)
Q Consensus        75 ~~L~r~~~ll~~lg~p~-----~~~~~I~VT---GTnGKtSTt~~l~~iL~------~~G~~vg~~  126 (378)
                      +.++.+..+.+..+.+.     ...++|+|+   |--|||||+..|+..|.      ..|++|.+.
T Consensus        87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli  152 (403)
T 3ez9_A           87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI  152 (403)
T ss_dssp             BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred             cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence            46788888887766543     457899999   56799999999999998      579999875

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=86.09  E-value=0.79  Score=44.01  Aligned_cols=35  Identities=20%  Similarity=0.080  Sum_probs=30.8

Q ss_pred             CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.++|+|++.   .||||++..|+..|...|++|.+.
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli  178 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL  178 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence            46789999864   689999999999999999999875

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=85.61  E-value=0.98  Score=42.50  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=30.3

Q ss_pred             CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           92 SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        92 ~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      ...++|.|+   |--||||++..++..|.+.|+||.+...
T Consensus        11 ~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~   50 (324)
T 3zq6_A           11 KGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST   50 (324)
T ss_dssp             TTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            344667776   5688999999999999999999988754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=85.31  E-value=1.1  Score=42.32  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +..+|.|+|.  .|||||+..|+..|...|.+|.+.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli  139 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA  139 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            3468999987  489999999999999999999764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=85.22  E-value=0.83  Score=39.98  Aligned_cols=30  Identities=33%  Similarity=0.416  Sum_probs=25.9

Q ss_pred             EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|.|+   |-.||||++..|+..|...| +|.++
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli   34 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI   34 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence            56776   56799999999999999999 99874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=84.72  E-value=1.7  Score=37.49  Aligned_cols=48  Identities=29%  Similarity=0.350  Sum_probs=34.0

Q ss_pred             HHHHHHHHhCC-CCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           79 RMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        79 r~~~ll~~lg~-p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+..+++.+-. +..+..+|+|+|-  .||||++.+|...|...|.++...
T Consensus         6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~   56 (201)
T 1rz3_A            6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF   56 (201)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence            34445444332 2234568999997  589999999999998878777554

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=83.89  E-value=0.68  Score=39.61  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=23.1

Q ss_pred             hCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061           87 LGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV  123 (378)
Q Consensus        87 lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v  123 (378)
                      +|++..+..+|+|+|.  .||||++.+|+..    |+.+
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~   35 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW----GYPV   35 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT----TCCE
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC----CCEE
Confidence            4677777889999996  7999999998874    6653

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=83.68  E-value=0.6  Score=44.75  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=28.4

Q ss_pred             CcEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +++|+|++   -.||||++.-|+..|...|+||.+.
T Consensus         1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI   36 (361)
T 3pg5_A            1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV   36 (361)
T ss_dssp             CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence            36788874   4789999999999999999999875

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=82.73  E-value=1.7  Score=37.22  Aligned_cols=35  Identities=23%  Similarity=0.173  Sum_probs=29.9

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t  127 (378)
                      ..++|.|+|.  .||||+...|...|...|++++.+.
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~   41 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence            3578999997  6899999999999998999998753

>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*

Probab=82.44  E-value=1.6  Score=40.08  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             CCCcEEEEeC----CCChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VTG----TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ...|.|-|||    +=|||-|++-|..+|++.|++|.+.
T Consensus        21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~   59 (295)
T 2vo1_A           21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSI   59 (295)
T ss_dssp             CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceee
Confidence            4678999999    5899999999999999999999763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=82.17  E-value=1  Score=38.38  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=28.3

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|.|.  .||||...+|...+...|+++|.+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I   36 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV   36 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence            68999997  579999999999999999998864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=81.96  E-value=1.8  Score=40.23  Aligned_cols=29  Identities=17%  Similarity=0.092  Sum_probs=24.7

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHHcC
Q 017061           92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEG  120 (378)
Q Consensus        92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G  120 (378)
                      .+..+|+|+|.  .||||++.+|...|...|
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g   59 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY   59 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence            34568999996  799999999999998755

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=81.65  E-value=1.2  Score=41.21  Aligned_cols=36  Identities=19%  Similarity=0.371  Sum_probs=27.4

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      +..+|+|||.  .||||++.+|+..|...|+++.++..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~   41 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG   41 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeec
Confidence            4468999996  79999999999999877777655443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=80.92  E-value=2.2  Score=39.66  Aligned_cols=35  Identities=26%  Similarity=0.255  Sum_probs=28.9

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHH-cCCceEeee
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRA-EGYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~-~G~~vg~~t  127 (378)
                      +..+|+|.|-  .|||||+..|+..+.. .|++|.+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~  141 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT  141 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            4458888876  4899999999999985 899998754

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=80.60  E-value=2.2  Score=40.61  Aligned_cols=36  Identities=19%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             CCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           93 KFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        93 ~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      ..++|.|+   |--||||++.-++..|.+.|+||.+...
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~   62 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST   62 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            44667666   5589999999999999999999988753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=80.51  E-value=2.2  Score=42.00  Aligned_cols=35  Identities=26%  Similarity=0.261  Sum_probs=29.6

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHc-CCceEeee
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAE-GYSVGCYT  127 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~-G~~vg~~t  127 (378)
                      ..++|.|+|.  .|||||+.-|+..|... |++|.+..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd  136 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS  136 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            3468888875  78999999999999998 99998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d2gc6a2	296	c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {	3e-32
d1o5za2	296	c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase	2e-31
d1e8ca3	234	c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid	4e-07
d1p3da3	215	c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine	2e-06
d1j6ua3	207	c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l	5e-04
d2jfga3	204	c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine	7e-04
d1gg4a4	214	c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl	0.001

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

 Score =  120 bits (302), Expect = 3e-32
 Identities = 82/311 (26%), Positives = 135/311 (43%), Gaps = 33/311 (10%)

Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+              D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKT-------------GDHRRILTLLHALGNPQQQGRYIHVTGT 47

Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YT+P I    ER+ +     P +A      F +    
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALE 107

Query: 163 LDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVI 222
             +  + +    T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+      SV+
Sbjct: 108 RLQQQQADFNV-TEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITPV---VSVL 163

Query: 223 TTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSA 282
           T +  +H   LG ++  IA  K+GIIK G P+V G         +    A+     +   
Sbjct: 164 TEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLR-- 221

Query: 283 YDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATC 342
           +D         L  +  R         + +        + D+++ ++G++Q  N   A  
Sbjct: 222 FDRDFSVPKAKLHGWGQR------FTYEDQD-----GRISDLEVPLVGDYQQRNMAIAIQ 270

Query: 343 AALCLRDQGGY 353
            A     Q  +
Sbjct: 271 TAKVYAKQTEW 281

>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Thermotoga maritima [TaxId: 2336]

 Score =  118 bits (296), Expect = 2e-31
 Identities = 98/299 (32%), Positives = 144/299 (48%), Gaps = 25/299 (8%)

Query: 49  MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGST 108
           M YL+ L+       P G          L R++ L+ +LGNPH ++KT+HI GT GKGS 
Sbjct: 4   MAYLEVLRYLYHKR-PMGKVK-----PGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSV 57

Query: 109 AAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIR 168
           A  +S+IL ++GY VG Y SPH+ T RER+ +      +S + +  ++  ++ +L+E  +
Sbjct: 58  ANMVSNILVSQGYRVGSYYSPHLSTFRERIRLN--EEYISEEDVVKIYETMEPILNELDK 115

Query: 169 LENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEE 228
            E    + FEV+TAMAF  FA+ +VDIAV+E GLGG  DATN++       S I T+  +
Sbjct: 116 EEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVFP---LCSTIVTVDRD 172

Query: 229 HTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIR 288
           H   LG ++E IA  KSGIIK            P +    + EA  +   V     + + 
Sbjct: 173 HEKTLGYTIEQIAWEKSGIIKERV---------PLVTGERKREALKVMEDVARKKSSRMY 223

Query: 289 ATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCL 347
                 S+         +       D        D+ L M G HQ+ NA  A       
Sbjct: 224 VIDKDFSVKVKSLKLHENRF-----DYCGENTFEDLVLTMNGPHQIENAGVALKTLEAT 277

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 29/259 (11%), Positives = 57/259 (22%), Gaps = 42/259 (16%)

Query: 90  PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSA 149
           P    + V + GT GK +T   L+   +  G          + T+      G L + +  
Sbjct: 1   PSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAV-----MGTV----GNGLLGKVIPT 51

Query: 150 KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDAT 209
           +        ++  L   +               +     A      +V            
Sbjct: 52  ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF----------- 100

Query: 210 NIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILR 269
                                  L                    L         I +   
Sbjct: 101 ---------------------TNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADD 139

Query: 270 DEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDII-VQAERDLKLSIELLDVKLCM 328
           +      +++  A    +   IN             +     A      S    +++  +
Sbjct: 140 EVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHL 199

Query: 329 IGNHQLHNALTATCAALCL 347
           +G   + N L A    L L
Sbjct: 200 MGAFNVSNLLLALATLLAL 218

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 31/261 (11%), Positives = 59/261 (22%), Gaps = 65/261 (24%)

Query: 87  LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRP 146
           L         + +AGT GK +T A +S I               +K+  +  ++G     
Sbjct: 5   LAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYL 64

Query: 147 VSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGAR 206
           +                                    + A F      ++V         
Sbjct: 65  I-------------------------------AEADESDASFLHLQPMVSV--------- 84

Query: 207 DATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEH 266
                          +T +  +H     G  E +       +            LP    
Sbjct: 85  ---------------VTNMEPDHMDTYEGDFEKMKATYVKFLHN----------LPFYGL 119

Query: 267 ILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKL 326
            +      +  ++V      +                           +  + E ++V L
Sbjct: 120 AVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 179

Query: 327 CMIGNHQLHNALTATCAALCL 347
            + G H   NA  A   A   
Sbjct: 180 NVPGKHNALNATAALAVAKEE 200

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 79  RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126
           R++   D L     K +   + GT GK +T A ++ +L+    S   +
Sbjct: 1   RLHYFRDTLKR--EKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVF 46

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 91  HSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI 131
            ++   V I G+ GK +    +  + +A G +VG   +  +
Sbjct: 8   EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL 48

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 95  KTVHIAGTKGKGSTAAFLSSILRAEGYSVG 124
           + V + G+ GK S     ++IL   G ++ 
Sbjct: 3   RVVALTGSSGKTSVKEMTAAILSQCGNTLY 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	100.0
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	100.0
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	100.0
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	100.0
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	100.0
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	99.98
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	99.97
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.98
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.8
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.05
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.15
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.64
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.61
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.59
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.43
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.25
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.22
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.01
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.86
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.8
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.07
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	91.55
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.44
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	90.57
d1okkd2	207	GTPase domain of the signal recognition particle r	89.7
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.58
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.87
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	88.73
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.01
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	86.76
d2qy9a2	211	GTPase domain of the signal recognition particle r	86.28
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	85.02
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	83.15
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	81.57
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	81.1
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	80.44

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=6.7e-57  Score=429.76  Aligned_cols=289  Identities=28%  Similarity=0.427  Sum_probs=248.4

Q ss_pred             ccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061           43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (378)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~  122 (378)
                      |+|+|+++||++++.+.   +          +++|+||+++|+.||+|+.++++||||||||||||++||++||+++|++
T Consensus         1 m~~~e~~~~l~~~~~~~---~----------~~~l~r~~~~l~~lg~P~~~lkvI~VTGTNGKtST~~~i~~IL~~~G~k   67 (296)
T d2gc6a2           1 MNYTETVAYIHSFPRLA---K----------TGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLT   67 (296)
T ss_dssp             CCHHHHHHHHHTCCCCC----------------CCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHhcCcCC---C----------CCCHHHHHHHHHHcCCchhhCCEEEEeccCcHHHHHHHHHHHHHhcCCc
Confidence            57899999999988663   2          3789999999999999999999999999999999999999999999999


Q ss_pred             eEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh-cCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeC
Q 017061          123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL-ENGCITHFEVLTAMAFALFAQNHVDIAVIEAG  201 (378)
Q Consensus       123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~-~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg  201 (378)
                      ||+|+|||+.+++||+++|  |.+++++.+...+..+...+.++... ....+++||+.+++++.+|.+..+|++|+|+|
T Consensus        68 vG~~tSP~~~~~~e~~~~~--~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~e~g  145 (296)
T d2gc6a2          68 VGLYTAPFIMRFNERIMID--HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVG  145 (296)
T ss_dssp             EEEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             eeeeecccccchhhhhccc--ccCCcHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHHHHHhcchhhhhhhH
Confidence            9999999999999999999  99999999999999999988887653 45689999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEE
Q 017061          202 LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVS  281 (378)
Q Consensus       202 ~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~  281 (378)
                      +++++|+++++.   |+++|||||+.||+++||+|+++|+++|++|++++.++|++ .++|.+.+++++.+.+.+++++.
T Consensus       146 ~g~~~d~~~~~~---~~~~viTni~~dH~~~lg~tle~Ia~~K~~i~k~~~~~v~~-~~~~~~~~~i~~~~~~~~~~~~~  221 (296)
T d2gc6a2         146 IGGDTDSTNVIT---PVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG-NLVPDAAAVVAAKVATTGSQWLR  221 (296)
T ss_dssp             SSSTTSTTCSCC---CSEEEECCCCSTTHHHHCSSHHHHHHHHHTTCCTTCCEEEC-CCCHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHhhhhhhccc---ceeecccccchHHHHhhhhHHHHHHHhhhcccccccccccc-cccHHHHHHHHHHHHhhCCcccc
Confidence            999999999875   68999999999999999999999999999999999999998 57788888999999999999887


Q ss_pred             ecccccchhccccccCCCCCCcccceeEeecc-cccc---cccccccccCCCchhHHHHHHHHHHHHHHHH-hcCCCCCH
Q 017061          282 AYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKL---SIELLDVKLCMIGNHQLHNALTATCAALCLR-DQGGYLML  356 (378)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~-~~~~gi~~  356 (378)
                      ++. ++               ..........+ .+.+   .....++++||+|.||++||++|++++..|. +.+++++.
T Consensus       222 ~~~-d~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hn~~Na~~Aia~~~~l~~~~~~~i~~  285 (296)
T d2gc6a2         222 FDR-DF---------------SVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTP  285 (296)
T ss_dssp             BTT-TE---------------EEEEEEECSSSEEEEEEETTEEEEEEEESCCSHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             cCc-ce---------------eeeccccccCCceEEEEcCCCccCcCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence            642 11               11111111000 0111   1123358899999999999999999999884 46789999


Q ss_pred             HHHHHHHhcC
Q 017061          357 SYFLSGFREE  366 (378)
Q Consensus       357 ~~I~~gL~~~  366 (378)
                      +.|++||+++
T Consensus       286 e~I~~GL~~~  295 (296)
T d2gc6a2         286 QNIRQGLAAS  295 (296)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999874

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-34  Score=263.48  Aligned_cols=228  Identities=18%  Similarity=0.173  Sum_probs=152.2

Q ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh
Q 017061           90 PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL  169 (378)
Q Consensus        90 p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~  169 (378)
                      |++++++|+||||||||||++||+++|+++|+++++.++-+.       .++  +.....                    
T Consensus         1 ps~~~~vI~ITGT~GKTTt~~~l~~iL~~~g~~~~~~gt~g~-------~~~--~~~~~~--------------------   51 (234)
T d1e8ca3           1 PSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGN-------GLL--GKVIPT--------------------   51 (234)
T ss_dssp             GGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEE-------EET--TCCBCC--------------------
T ss_pred             CCcCCeEEEEECCCcHHHHHHHHHHHHHHCCCCeEEECcccc-------CcC--cccccc--------------------
Confidence            788999999999999999999999999999999998766432       122  111110                    


Q ss_pred             cCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc
Q 017061          170 ENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK  249 (378)
Q Consensus       170 ~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik  249 (378)
                      ....+...+....  +..+...+++++++|+++.|.  ....+...+|+++|||||++||+|+|| ++|+|+.+|+.||+
T Consensus        52 ~~~t~~~~~~~~~--l~~~~~~~~~~~~le~ss~g~--~~~~~~~~~p~i~vitNi~~dHld~~~-~~e~~~~~K~~i~~  126 (234)
T d1e8ca3          52 ENTTGSAVDVQHE--LAGLVDQGATFCAMEVSSHGL--VQHRVAALKFAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYS  126 (234)
T ss_dssp             SSSSCCHHHHHHH--HHHHHHTTCCEEEEECCHHHH--HTTTTTTCBCSEEEECCCCSCCHHHHS-SHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHH--HHHHhhcCCceeeeccCccch--hhhhhcccccceEEEeeccccchhhhc-cccceehhhhcccc
Confidence            0111222222222  234677899999999987653  333344456899999999999999997 89999999999995


Q ss_pred             --CCCeEEEcCCCChhHHHHHHHHHHhhCCeE-EEecccccchhccccccCCCCCCcccceeEeecc-ccc--ccccccc
Q 017061          250 --YGRPLVLGGPFLPHIEHILRDEASLMCSQV-VSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLK--LSIELLD  323 (378)
Q Consensus       250 --~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~  323 (378)
                        +.+.+|+| .|||....++.    +..... +.+.. .....      ....++...++.+...+ .+.  ......+
T Consensus       127 ~~~~~~~iin-~Dd~~~~~~~~----~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (234)
T d1e8ca3         127 EHHCGQAIIN-ADDEVGRRWLA----KLPDAVAVSMED-HINPN------CHGRWLKATEVNYHDSGATIRFSSSWGDGE  194 (234)
T ss_dssp             TSBCCEEEEE-TTSHHHHHHHT----TCTTCEEEESSS-CCCTT------TCSEEEEEEEEEECSSCEEEEEEETTCCEE
T ss_pred             ccccceeEEe-cccccchhhhh----hhccceeeeecc-ccccc------cccccccccccccccccceeeeecCCceEE
Confidence              34668889 57886544432    222222 22211 00000      00011222222222111 111  1223456


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC
Q 017061          324 VKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF  368 (378)
Q Consensus       324 i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~  368 (378)
                      +.++++|.||++|+++|+++|+.+     |++.+.|+++|++|+|
T Consensus       195 i~~~l~G~hni~N~laAiava~~l-----Gi~~~~i~~~l~~fkP  234 (234)
T d1e8ca3         195 IESHLMGAFNVSNLLLALATLLAL-----GYPLADLLKTAARLQP  234 (234)
T ss_dssp             EEECSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCC
Confidence            889999999999999999999999     9999999999999864

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=3e-33  Score=252.51  Aligned_cols=197  Identities=17%  Similarity=0.124  Sum_probs=141.1

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      ..++|+||||||||||+.||+++|+++|++++...+.....+         +.+.                         
T Consensus        11 ~~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~---------~~~~-------------------------   56 (215)
T d1p3da3          11 FRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSA---------GKNA-------------------------   56 (215)
T ss_dssp             TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT---------TEEE-------------------------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccC---------cccc-------------------------
Confidence            347999999999999999999999999999876543221111         1110                         


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---  249 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---  249 (378)
                                      .....+++|+|+++.+..     +...+|+++|||||++||+|+|++++|.|+++|..|++   
T Consensus        57 ----------------~~~~~~~~v~E~~~~~~~-----~~~~~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~  115 (215)
T d1p3da3          57 ----------------HLGASRYLIAEADESDAS-----FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLP  115 (215)
T ss_dssp             ----------------ECCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSC
T ss_pred             ----------------ccCCCceEEEEcCCcccc-----ceeEcCCEEEEecccccccccccCCHHHHHHHHHHHHhcCC
Confidence                            114568999999976542     12246899999999999999886699999999999986   


Q ss_pred             CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-c---ccccccccccc
Q 017061          250 YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-D---LKLSIELLDVK  325 (378)
Q Consensus       250 ~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~i~  325 (378)
                      +++.+|+| .||+....    .+++..+++++|+...            ..+....++...... .   ........++.
T Consensus       116 ~~g~~V~n-~dd~~~~~----~~~~~~~~~~~~g~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (215)
T d1p3da3         116 FYGLAVMC-ADDPVLME----LVPKVGRQVITYGFSE------------QADYRIEDYEQTGFQGHYTVICPNNERINVL  178 (215)
T ss_dssp             TTCEEEEE-TTCHHHHH----HHHHHCSEEEEEESST------------TCSEEEEEEEEETTEEEEEEECTTCCEEEEE
T ss_pred             CCCEEEEe-CcchHHHH----HHHhcCCceEEEcccc------------cccccccccccccccccccccccccceeeEE
Confidence            46789999 57886544    3344567888875321            111111122111111 0   01112345678


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcC
Q 017061          326 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREE  366 (378)
Q Consensus       326 l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~  366 (378)
                      +|++|.||++|+++|+++|+.|     |++++.|+++|++|
T Consensus       179 l~l~G~hn~~N~laAia~a~~l-----Gi~~~~i~~~L~~F  214 (215)
T d1p3da3         179 LNVPGKHNALNATAALAVAKEE-----GIANEAILEALADF  214 (215)
T ss_dssp             ESSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTC
T ss_pred             eCCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhc
Confidence            9999999999999999999999     99999999999987

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-33  Score=251.87  Aligned_cols=205  Identities=20%  Similarity=0.237  Sum_probs=141.0

Q ss_pred             cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (378)
Q Consensus        95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (378)
                      |+|+||||||||||++||++||+++|+++++.++              ++.++....                       
T Consensus         3 kvI~VTGTnGKTTt~~mi~~iL~~~g~~~~~~g~--------------~n~~~g~~~-----------------------   45 (214)
T d1gg4a4           3 RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN--------------LNNDIGVPM-----------------------   45 (214)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTT--------------CCSTTHHHH-----------------------
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHHhCCCCEEEeCc--------------ccCccccch-----------------------
Confidence            6999999999999999999999999999876433              122221100                       


Q ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---CC
Q 017061          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---YG  251 (378)
Q Consensus       175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---~~  251 (378)
                                ..+....+.++.++|+++....+...++....|+++|||||++||+|+|| ++++|+++|+.+++   +.
T Consensus        46 ----------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~viTNi~~dHld~~~-~~~~~~~~k~~~~~~~~~~  114 (214)
T d1gg4a4          46 ----------TLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLPEN  114 (214)
T ss_dssp             ----------HHTTCCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC---------CHHHHHHHHHGGGGGCCTT
T ss_pred             ----------hhhhcccccccchhhhhhhhcccccccccccCchheeeehhccccccccc-cHHHHHhhhhhHhhhhccC
Confidence                      01234567899999999887766666666667899999999999999997 89999999999985   56


Q ss_pred             CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-cccc--cccccccccCC
Q 017061          252 RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKL--SIELLDVKLCM  328 (378)
Q Consensus       252 ~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~l~l  328 (378)
                      +.+|+| .||+........   ....+++.++...           ...++...++.....+ .+.+  .....++.+|+
T Consensus       115 g~~v~n-~dd~~~~~~~~~---~~~~~~~~~~~~~-----------~~ad~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l  179 (214)
T d1gg4a4         115 GIAIMN-ADNNDWLNWQSV---IGSRKVWRFSPNA-----------ANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPL  179 (214)
T ss_dssp             CEEEEE-TTBCCHHHHHHH---HTTSEEEEECSSC-----------TTCSBEEEEEEECSSSEEEEEEETTEEEEEEECS
T ss_pred             Cccccc-cccHHHHHHHHH---hcCCceeeeccCC-----------CCcceeeeeEEEeCCceEEEEEECCceEEEEeCC
Confidence            789999 578876544332   2345666665221           1123333333322221 1111  22345688999


Q ss_pred             CchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCC
Q 017061          329 IGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEH  367 (378)
Q Consensus       329 ~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~  367 (378)
                      +|.||++|+++|++++..+     |++++.|.++|++|+
T Consensus       180 ~G~hn~~NalaAia~~~~l-----gi~~~~i~~~l~~fk  213 (214)
T d1gg4a4         180 PGRHNIANALAAAALSMSV-----GATLDAIKAGLANLK  213 (214)
T ss_dssp             SSTHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcC
Confidence            9999999999999999999     999999999999884

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=8e-33  Score=247.52  Aligned_cols=191  Identities=20%  Similarity=0.143  Sum_probs=139.9

Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (378)
Q Consensus        93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~  172 (378)
                      +.|+|+||||||||||++||+++|+++|+++++.++.              |.|..                        
T Consensus        10 ~~~vI~VTGT~GKTTt~~~l~~iL~~~g~~~~~~~~~--------------~~~~~------------------------   51 (204)
T d2jfga3          10 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNI--------------GLPAL------------------------   51 (204)
T ss_dssp             CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEETT--------------SSCGG------------------------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhcCCCcccCCcc--------------ccccc------------------------
Confidence            5689999999999999999999999999999874432              44332                        


Q ss_pred             CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (378)
Q Consensus       173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~  252 (378)
                                    .....+.|++|+|+|+.+..+    +...+|+++|||||++||+|+||++++.+...|..++++..
T Consensus        52 --------------~~~~~~~~~~V~E~~~~~~~~----~~~~~p~i~viTNi~~dHld~~~~~~~~~~~~~~~i~~~~~  113 (204)
T d2jfga3          52 --------------MLLDDECELYVLELSSFQLET----TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK  113 (204)
T ss_dssp             --------------GGCCTTCCEEEEECCHHHHHT----CCCCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCS
T ss_pred             --------------ccccccceEEEEeeccccccc----ccccccccceeeeeccccccccccHHHHHHHHHHhhhcccc
Confidence                          124467999999999865332    33456899999999999999998679999999999999999


Q ss_pred             eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccc-cccc--ccccccccCCC
Q 017061          253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERD-LKLS--IELLDVKLCMI  329 (378)
Q Consensus       253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~i~l~l~  329 (378)
                      .+|+| .||+....+     .....++++++....             ++.   +....... +...  .......++++
T Consensus       114 ~~v~n-~dd~~~~~~-----~~~~~~~i~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (204)
T d2jfga3         114 VCVVN-ADDALTMPI-----RGADERCVSFGVNMG-------------DYH---LNHQQGETWLRVKGEKVLNVKEMKLS  171 (204)
T ss_dssp             EEEEE-TTCGGGSCT-----TCCCTTEEEECSSSS-------------SEE---EEEETTEEEEEETTEEEEEGGGCSCC
T ss_pred             ceeeh-hhhHHHHHH-----HccCCceEEeecccc-------------chh---hcccccccceeecCCccccccccCCC
Confidence            99999 577754322     223456666642110             000   00000000 0000  11122468999


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcC
Q 017061          330 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREE  366 (378)
Q Consensus       330 G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~  366 (378)
                      |.||++|+++|+++|..|     |++.+.|+++|++|
T Consensus       172 G~hn~~N~laAia~a~~l-----Gi~~~~i~~~L~~F  203 (204)
T d2jfga3         172 GQHNYTNALAALALADAA-----GLPRASSLKALTTF  203 (204)
T ss_dssp             SHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhc
Confidence            999999999999999999     99999999999987

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=9.3e-32  Score=241.53  Aligned_cols=205  Identities=20%  Similarity=0.143  Sum_probs=140.3

Q ss_pred             hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (378)
Q Consensus        77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (378)
                      |+.++.+|++     .+.++|+||||||||||+.||+++|++.|++++.+             ++.++.++..       
T Consensus         2 ~~~~~~~l~~-----~~~~~iAITGTnGKTTt~~~l~~iL~~~g~~~~~~-------------~g~~~~~~~~-------   56 (207)
T d1j6ua3           2 LHYFRDTLKR-----EKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVF-------------LGGIMDSLEH-------   56 (207)
T ss_dssp             HHHHHHHHHH-----HCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEE-------------CSSCCTTSTT-------
T ss_pred             hHHHHHHHhh-----cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEE-------------ECCccccccc-------
Confidence            4455556555     35589999999999999999999999999987653             2212333321       


Q ss_pred             HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (378)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t  236 (378)
                                                    .....+.+++|+|++....     .+...+|+++|||||++||+|+||++
T Consensus        57 ------------------------------~~~~~~~~~~v~e~~e~~~-----~~~~~~p~iaviTNI~~dHLd~~~~~  101 (207)
T d1j6ua3          57 ------------------------------GNYEKGNGPVVYELDESEE-----FFSEFSPNYLIITNARGDHLENYGNS  101 (207)
T ss_dssp             ------------------------------SSEECCSSCEEEEECTTSG-----GGGGCCCSEEEECCCCCCCGGGGTTC
T ss_pred             ------------------------------hhccCCCcceeEEeeechh-----hhhhhhhceeeeeechhhhhhccCcc
Confidence                                          1234677899999987653     24445689999999999999999988


Q ss_pred             HHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccc
Q 017061          237 LETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLK  316 (378)
Q Consensus       237 le~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (378)
                      ++.|+..|..+++.++.+|+| .||+....+          ..+.++........   ......... ....+..     
T Consensus       102 ~~~~~~~k~~~~~~~~~~i~n-~dd~~~~~~----------~~~~~g~~~~~~~~---~~~~~~~~~-~~~~~~~-----  161 (207)
T d1j6ua3         102 LTRYRSAFEKISRNTDLVVTF-AEDELTSHL----------GDVTFGVKKGTYTL---EMRSASRAE-QKAMVEK-----  161 (207)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEE-TTCTTTGGG----------CSEEECSSSSSEEE---EEEEECSSC-EEEEEEE-----
T ss_pred             ccccccccchhhhhccccccc-ccccccccc----------cccccccccccccc---ccccccccc-ccccccc-----
Confidence            999999999999988889998 566643211          11222211000000   000000000 0000000     


Q ss_pred             ccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcC
Q 017061          317 LSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREE  366 (378)
Q Consensus       317 ~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~  366 (378)
                      ......++++|++|.||++|+++|+++|..+     |++.+.|.++|++|
T Consensus       162 ~~~~~~~~~l~l~G~hn~~NalaAiava~~l-----gi~~~~i~~~L~~F  206 (207)
T d1j6ua3         162 NGKRYLELKLKVPGFHNVLNALAVIALFDSL-----GYDLAPVLEALEEF  206 (207)
T ss_dssp             TTEEEEEEEESSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHC
T ss_pred             cCcEEEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhc
Confidence            0112246889999999999999999999999     99999999999988

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.98  E-value=6.3e-06  Score=76.81  Aligned_cols=166  Identities=17%  Similarity=0.207  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee----eCCcccc--cceEEeeCCCCcccCH
Q 017061           78 GRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHIKT--IRERMNVGRLNRPVSA  149 (378)
Q Consensus        78 ~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~----tSp~l~~--~~eri~in~~G~~is~  149 (378)
                      +....+++.+-....+..+|+|||+  .||||+..-+...+...|++|++.    +||.-..  ..+|+++.  .....+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~--~~~~~~  112 (323)
T d2qm8a1          35 AAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA--RLAIDR  112 (323)
T ss_dssp             HHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGST--TGGGCT
T ss_pred             HHHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHH--HHhccc
Confidence            4456677776544557789999998  899999999998888999999987    4443111  23344443  111111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCCcccccccccCCCcEEEEccCChh
Q 017061          150 KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGARDATNIISSSGLAASVITTIGEE  228 (378)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~D~t~~~~~~~p~vaVITNI~~D  228 (378)
                      ..+.+..            ...+....+.-.|.-+..++...+.|++++|+ |.|+-  .+.+....+..+.|++.=.- 
T Consensus       113 ~~~ir~~------------~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~--e~~~~~~~D~~v~v~~p~~G-  177 (323)
T d2qm8a1         113 NAFIRPS------------PSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS--ETAVADLTDFFLVLMLPGAG-  177 (323)
T ss_dssp             TEEEECC------------CCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC--HHHHHTTSSEEEEEECSCC--
T ss_pred             ceeeccc------------cccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhh--hhhhhcccceEEEEeeccch-
Confidence            0000000            00011122222222233445567899999999 44432  23333333334555555332 


Q ss_pred             hHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHH
Q 017061          229 HTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILR  269 (378)
Q Consensus       229 Hld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~  269 (378)
                               +++-..|++|+.-...+|+|+.|.+...+..+
T Consensus       178 ---------D~iQ~~k~gilE~aDi~vvNKaD~~~~~~~~~  209 (323)
T d2qm8a1         178 ---------DELQGIKKGIFELADMIAVNKADDGDGERRAS  209 (323)
T ss_dssp             --------------CCTTHHHHCSEEEEECCSTTCCHHHHH
T ss_pred             ---------hhhhhhhhhHhhhhheeeEeccccccchHHHH
Confidence                     44556689999888889999877565544443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1.5e-05  Score=74.25  Aligned_cols=161  Identities=16%  Similarity=0.193  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee----eCCccc--ccceEEeeCCCCcccCH
Q 017061           78 GRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHIK--TIRERMNVGRLNRPVSA  149 (378)
Q Consensus        78 ~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~----tSp~l~--~~~eri~in~~G~~is~  149 (378)
                      +..+++|..+-....+..+|+|||.  .||||...-+...+...|++|++.    +||.-.  -..+|++++..+.  .+
T Consensus        38 ~~~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~--~~  115 (327)
T d2p67a1          38 ALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLAR--AE  115 (327)
T ss_dssp             HHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTT--CT
T ss_pred             HHHHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcc--cc
Confidence            3456777776443457889999999  899999999999999999999876    344311  1235555542211  10


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCCcccccccccCCCcEEEEccCChh
Q 017061          150 KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGARDATNIISSSGLAASVITTIGEE  228 (378)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~D~t~~~~~~~p~vaVITNI~~D  228 (378)
                      ..+.+..            ...+.+..+.-.+.-+..++...+.|++++|+ |.|+.  ...+....+.-+.|++.=   
T Consensus       116 ~~~ir~~------------~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~--e~~i~~~aD~~l~v~~P~---  178 (327)
T d2p67a1         116 AAFIRPV------------PSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS--ETEVARMVDCFISLQIAG---  178 (327)
T ss_dssp             TEEEEEE------------CC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH--HHHHHTTCSEEEEEECC----
T ss_pred             ccccccc------------ccccccccchhhhhHHHHHHHhcCCCeEEEeecccccc--chhhhhccceEEEEecCC---
Confidence            0000000            00112222323333444566778899999999 55542  222333332333444332   


Q ss_pred             hHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhH
Q 017061          229 HTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHI  264 (378)
Q Consensus       229 Hld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~  264 (378)
                             .-+++-..|++|+.-...+|+|+.|-+..
T Consensus       179 -------~Gd~iq~~k~gi~e~aDi~VvNKaD~~~~  207 (327)
T d2p67a1         179 -------GGDDLQGIKKGLMEVADLIVINKDDGDNH  207 (327)
T ss_dssp             ------------CCCCHHHHHHCSEEEECCCCTTCH
T ss_pred             -------CchhhhhhchhhhccccEEEEEeecccch
Confidence                   22344445888887777899997765543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0024  Score=53.92  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=28.9

Q ss_pred             cEEEEeCCC---ChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGTn---GKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      |.+-||||+   ||||++.-|+..|.+.|+||.++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~i   36 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            567788886   99999999999999999999886

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.15  E-value=0.17  Score=42.89  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=29.3

Q ss_pred             CCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           89 NPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        89 ~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      .|.+...+|...|-  .|||||++=|++-++..|.+|++.|.
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~   48 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGA   48 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence            45566667877785  68999999999999999999998754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.64  E-value=0.14  Score=43.52  Aligned_cols=41  Identities=22%  Similarity=0.279  Sum_probs=32.4

Q ss_pred             CCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           88 GNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        88 g~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      ..|..+..+|...|-  .|||||.+=|++-+...|.+|++.+.
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~   47 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA   47 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence            334445557777775  68999999999999999999999754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.036  Score=48.54  Aligned_cols=47  Identities=21%  Similarity=0.212  Sum_probs=38.7

Q ss_pred             CChHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061           75 FDLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        75 ~~L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.+|...+++=|     .++|.++|  -.|||||+..|+..|.+.|++|.+.
T Consensus         6 ~~~~~~~~~~~~~~-----~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllv   54 (279)
T d1ihua2           6 PSLSALVDDIARNE-----HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT   54 (279)
T ss_dssp             CCHHHHHHHHHTTS-----CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccHHHHHHHhhcCC-----CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            67888888877533     36787775  5799999999999999999999875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.59  E-value=0.03  Score=45.79  Aligned_cols=52  Identities=27%  Similarity=0.326  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhCCCCCCCc-EEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061           78 GRMNRLMDRLGNPHSKFK-TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP  129 (378)
Q Consensus        78 ~r~~~ll~~lg~p~~~~~-~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp  129 (378)
                      +|+..+++..-+.+.+-| +|+|+|-  .||||++..|...|...|..+.....+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~   59 (198)
T d1rz3a_           5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (198)
T ss_dssp             HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             HHHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccc
Confidence            466777766544444444 6999985  899999999999999999888765443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.43  E-value=0.56  Score=39.40  Aligned_cols=88  Identities=13%  Similarity=0.001  Sum_probs=53.0

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh-
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL-  169 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~-  169 (378)
                      +.++|.+.|-  .|||||++-|++.++..|++|++.+.-.   |    ++.             +.++++...+.+.-. 
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt---~----R~g-------------A~eQL~~~a~~l~v~~   68 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT---Q----RPA-------------AREQLRLLGEKVGVPV   68 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS---S----CHH-------------HHHHHHHHHHHHTCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc---c----cch-------------HHHHHHHHHHhcCCcc
Confidence            3456777775  6899999999999999999999865421   0    111             233444444443221 


Q ss_pred             -cCCCcCHHHHHHHHHHHHHHhcCCCEEEEee
Q 017061          170 -ENGCITHFEVLTAMAFALFAQNHVDIAVIEA  200 (378)
Q Consensus       170 -~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv  200 (378)
                       ....+...+-..-.+..+....++|++++-+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vlIDT  100 (207)
T d1ls1a2          69 LEVMDGESPESIRRRVEEKARLEARDLILVDT  100 (207)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             ccccccchhhHHHHHHHHHHhhccCcceeecc
Confidence             1222333333333344455667889999887

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.25  E-value=0.025  Score=45.76  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +++|+|+|.  .||||+..-|..-|+..|++|+..
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi   35 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV   35 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            478999997  789999999999999999999985

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.22  E-value=0.017  Score=51.85  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=29.3

Q ss_pred             CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      .+.|+|+|||.  .||||++..|.++|...|.++.+.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI   38 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI   38 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEE
Confidence            46789999997  789999999999999999987664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.029  Score=44.73  Aligned_cols=33  Identities=24%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|+|||.  .||||.+.-|..-|...|++++..
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~   36 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI   36 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence            489999997  789999999999999999999874

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.86  E-value=0.051  Score=48.05  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=29.4

Q ss_pred             CcEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++.|+|.  |--|||||+.-|+..|.+.|+||.+.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlI   36 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV   36 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            5678887  67899999999999999999999875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.068  Score=48.29  Aligned_cols=43  Identities=30%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             HhCCCCCCCc-EEEEeCC--CChHHHHHHHHHHHHHc--CCceEeeeC
Q 017061           86 RLGNPHSKFK-TVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCYTS  128 (378)
Q Consensus        86 ~lg~p~~~~~-~I~VTGT--nGKtSTt~~l~~iL~~~--G~~vg~~tS  128 (378)
                      .||....+.| +|+|+|.  .||||++..|..+|...  |.+|.+++.
T Consensus        71 fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~  118 (308)
T d1sq5a_          71 FLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITT  118 (308)
T ss_dssp             HHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred             HhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEee
Confidence            4677665554 7999996  89999999999999854  678877544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.07  E-value=0.064  Score=46.72  Aligned_cols=33  Identities=33%  Similarity=0.368  Sum_probs=28.9

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++.|+|+|  --||||++.-|+..|.+.|++|.++
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllI   35 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV   35 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            36788885  5799999999999999999999886

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.55  E-value=0.083  Score=42.35  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=28.4

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|.|+|.  .||||++..|+.-|...|+++..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   35 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV   35 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            68999997  899999999999999999887653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.44  E-value=0.064  Score=43.32  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=28.7

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|.|+|.  .||||++..|+..|...|+++-.+
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~   35 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII   35 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            478999997  799999999999999999887543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.57  E-value=0.12  Score=43.48  Aligned_cols=33  Identities=27%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      +|+|+|++.   -||||++.-|+..|...|++|.+.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~Vlli   36 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIV   36 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence            478888854   899999999999999999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=89.70  E-value=0.19  Score=42.45  Aligned_cols=36  Identities=28%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      +.++|.+.|-  .|||||++=|++-++..|.+|++.+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~   42 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG   42 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence            4467888885  68999999999999999999998654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.58  E-value=0.2  Score=43.56  Aligned_cols=35  Identities=20%  Similarity=0.143  Sum_probs=30.1

Q ss_pred             CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      .++|-++|  --||||++..++..|.+.|+||.+...
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~   44 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST   44 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeC
Confidence            46777885  689999999999999999999988753

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.87  E-value=0.21  Score=41.90  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=28.7

Q ss_pred             cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (378)
Q Consensus        95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~  126 (378)
                      ++|+|+|.   -||||++.-|+..|...|++|.+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vlli   37 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            57888854   899999999999999999999886

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=88.73  E-value=0.81  Score=41.20  Aligned_cols=38  Identities=32%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPH  130 (378)
Q Consensus        93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~  130 (378)
                      +.+.|.|-||   -||=||+-.|...|++.|+++++..|-.
T Consensus       156 ~~~rvl~vGTDca~GK~tTal~l~~~l~~~G~~a~fiaTGQ  196 (338)
T d2g0ta1         156 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQ  196 (338)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSH
T ss_pred             CCcEEEEeccCccccHHHHHHHHHHHHHhCCCCeeEEEcCC
Confidence            5688999999   7999999999999999999999876643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.01  E-value=0.3  Score=40.10  Aligned_cols=34  Identities=35%  Similarity=0.469  Sum_probs=29.7

Q ss_pred             EEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP  129 (378)
Q Consensus        96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp  129 (378)
                      +|.|.|.  .||||.+..|..-|.+.|++|..+.-|
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            5889997  899999999999999999999775545

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.34  Score=42.26  Aligned_cols=37  Identities=30%  Similarity=0.468  Sum_probs=31.1

Q ss_pred             CcEEEEeC----CCChHHHHHHHHHHHHHcCCceEee-eCCc
Q 017061           94 FKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY-TSPH  130 (378)
Q Consensus        94 ~~~I~VTG----TnGKtSTt~~l~~iL~~~G~~vg~~-tSp~  130 (378)
                      +|.|-|||    +=|||-|++-|..+|++.|++|.+. --|+
T Consensus         1 mKyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY   42 (273)
T d2vo1a1           1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY   42 (273)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred             CeEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccc
Confidence            36789998    5899999999999999999999764 3344

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=86.28  E-value=0.47  Score=40.03  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=29.3

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS  128 (378)
                      ..+|.+.|-  .|||||.+=|++-++..|.+|++.+.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~   45 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG   45 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            356777775  58999999999999999999998754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.33  Score=40.49  Aligned_cols=27  Identities=26%  Similarity=0.386  Sum_probs=21.5

Q ss_pred             Cc-EEEEeCC--CChHHHHHHHHHHHHHcCCceE
Q 017061           94 FK-TVHIAGT--KGKGSTAAFLSSILRAEGYSVG  124 (378)
Q Consensus        94 ~~-~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg  124 (378)
                      ++ +|+|||.  .||||++.+    |++.|++|.
T Consensus         2 mk~iIgitG~igSGKStv~~~----l~~~G~~vi   31 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANA----FADLGINVI   31 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHH----HHHTTCEEE
T ss_pred             CCEEEEEECCCcCCHHHHHHH----HHHCCCcEE
Confidence            45 8999997  899998875    577898763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.6  Score=36.65  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=28.9

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee-eCCc
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY-TSPH  130 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~-tSp~  130 (378)
                      +.|.|||.  .||||++..+...|...|.++..+ ++|+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~   40 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV   40 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            46889997  689999999999999999877544 4443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=0.97  Score=37.57  Aligned_cols=36  Identities=22%  Similarity=0.236  Sum_probs=30.1

Q ss_pred             CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP  129 (378)
Q Consensus        94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp  129 (378)
                      -++|.|.|-  .||||.+..|..-|.+.|++|.++.-|
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p   40 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP   40 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            357888884  899999999999999999999765444

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=81.10  E-value=0.47  Score=39.29  Aligned_cols=26  Identities=23%  Similarity=0.334  Sum_probs=20.2

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCCceE
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVG  124 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg  124 (378)
                      .+|||||.  .||||++.    +|++.|+.|.
T Consensus         3 ~iIgITG~igSGKStv~~----~l~~~G~~vi   30 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIAN----LFTDLGVPLV   30 (205)
T ss_dssp             EEEEEECSTTSCHHHHHH----HHHTTTCCEE
T ss_pred             EEEEEECCCCCCHHHHHH----HHHHCCCeEE
Confidence            47999996  89999776    4567788764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=0.4  Score=39.72  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             cEEEEeCC--CChHHHHHHHHHHHHHcCC
Q 017061           95 KTVHIAGT--KGKGSTAAFLSSILRAEGY  121 (378)
Q Consensus        95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~  121 (378)
                      -+|+|||.  .||||.+..|+..|...+.
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~~~   31 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQNEV   31 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchhcc
Confidence            37999996  8999999999999876543