Citrus Sinensis ID: 017074

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMDASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEEccccccccEEEEEHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEEEEEEcccccEEEEEEEEEHHcccHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHEEcccccEEEEEEEccccccccEEEEEcHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEEEEEEccccccEEEEEEEcHHHccHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mltciarskqpgddslsqpedsdsstgsgstKQQAIKSLTSQLKDMALkasgayrhcspctapgaaqsrlksnsgesdadsdrfrwsyrrtgssssttprttwgKEMEARLKGissssgeatpiksvsgrrvdpvvfieenepkewvaqvepgVLITFVslprggndlkrIRFSRDMFNKWQAQRWWAENYDRVMELYNVQrfnrqafplptpprsedesskiesveespvtppltrerlprnlyrptgmgmgysssdsldhhpmqarnyydsggltstpklssisgaktetssmdasirssssrdadrsgelsisnasdletewveqdepgvYITIRalpggkreLRRVRFSREKFGEMHARLWWEENRARIHEQYL
Flexible Loop (DISEMBL)
mltciarskqpgddslsqpedsdsstgsgstkQQAIKSLTSQLKDMALKASGAYRHCSPCTApgaaqsrlksnsgesdadsdrfrwsyrrtgssssttprttwgkeMEARLKgissssgeatpiksvsgrrvdPVVFIEenepkewvaqvepgVLITfvslprggnDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFnrqafplptpprsedesskiesveespvtppltrerlprnlYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSisgaktetssmdasirssssrdadrsgelsisnasdletewveqdepgVYITiralpggkrelrrvrfsrekfgemharlwweenrariheqyl
Low Complexity Region (SEG)
MLTCIARSKQPGDDSLSQPEdsdsstgsgstKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFrwsyrrtgssssttprttWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETssmdasirssssrdadrsGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL
Disordered region (IsUnstruct)
***********************************************************************************************************************************VDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQ**********************************************************************************************************************WVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEEN*********
Disordered Region (DISOPRED)
MLTCIAR****************************IKSLTSQLKDMALKA************************************************************************************************VAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVME**********************************************************************************************************************************EQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL
Disordered Region (DISEMBL)
***********************************IKSLTSQLKDMALKASGAYRHCSPCT********************DRFRWSYR**************GKEMEARLKG**************SGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLP************************TRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSS*****************************SISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL
Disordered Region (DISPRO)
MLTCI*RSK************************QAIKSLTSQLKDMALKASGAYRHCS******************************************************************************F****EPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQR***********************************************************************************************************************ETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMDASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q8GZ92	384	Protein Brevis radix-like	yes	no	0.962	0.947	0.706	1e-145
Q8GYL9	374	Protein Brevis radix-like	no	no	0.955	0.965	0.606	1e-121
Q5HZ09	370	Protein Brevis radix-like	no	no	0.899	0.918	0.566	1e-114
Q6YUB8	397	Protein Brevis radix-like	yes	no	0.962	0.916	0.576	1e-113
Q17TI5	344	Protein BREVIS RADIX OS=A	no	no	0.873	0.959	0.448	5e-78
O82281	331	Protein Brevis radix-like	no	no	0.843	0.963	0.451	7e-72
Q84T65	329	Protein Brevis radix-like	no	no	0.798	0.917	0.439	1e-54
Q6ZIK7	411	Protein Brevis radix-like	no	no	0.238	0.218	0.627	5e-23
Q7XPT0	213	Putative protein Brevis r	no	no	0.502	0.892	0.35	1e-22
Q2QWK1	323	Putative protein Brevis r	no	no	0.140	0.164	0.629	4e-14

>sp|Q8GZ92|BRXL4_ARATH Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1

 Score =  513 bits (1322), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/398 (70%), Positives = 318/398 (79%), Gaps = 34/398 (8%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCIARSK+ GD+S  QP+D DS            KSLTSQLKDMALKASGAYRHC+PC
Sbjct: 1   MLTCIARSKRAGDESSGQPDDPDSKNA---------KSLTSQLKDMALKASGAYRHCTPC 51

Query: 61  TAPGAAQSR---LKSN----SGESDADSD-RFRWSYRRTGSS----------SSTTPRTT 102
           TA          +K+N    S +SD +SD RF+  Y R+ SS              PR  
Sbjct: 52  TAAQGQGQGQGPIKNNPSSSSVKSDFESDQRFKMLYGRSNSSITATAAVAATQQQQPRV- 110

Query: 103 WGKEMEARLKGISSSSGEATPIKSVSGR-RVDPVVFIEENEPKEWVAQVEPGVLITFVSL 161
           WGKEMEARLKGISS  GEATP KS SGR RVDP+VF+EE EPKEWVAQVEPGVLITFVSL
Sbjct: 111 WGKEMEARLKGISS--GEATP-KSASGRNRVDPIVFVEEKEPKEWVAQVEPGVLITFVSL 167

Query: 162 PRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESS 221
           P GGNDLKRIRFSRDMFNK QAQRWWA+NYD+VMELYNVQ+ +RQAFPLPTPPRSEDE++
Sbjct: 168 PGGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSRQAFPLPTPPRSEDENA 227

Query: 222 KIE-SVEESPVTPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTP 280
           K+E   E++P TPPL +ERLPR ++RP G+   YSSSDSLDH+ MQ++ +YDSG L STP
Sbjct: 228 KVEYHPEDTPATPPLNKERLPRTIHRPPGLA-AYSSSDSLDHNSMQSQQFYDSGLLNSTP 286

Query: 281 KLSSISGAKTETSSMDASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRAL 340
           K+SSIS AKTETSS+DASIRSSSSRDADRS E+S+SNASD++ EWVEQDEPGVYITI+ L
Sbjct: 287 KVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNEWVEQDEPGVYITIKVL 346

Query: 341 PGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL 378
           PGGKRELRRVRFSRE+FGEMHARLWWEENRARIHEQYL
Sbjct: 347 PGGKRELRRVRFSRERFGEMHARLWWEENRARIHEQYL 384

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYL9|BRXL2_ARATH Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1

 Score =  434 bits (1115), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/391 (60%), Positives = 288/391 (73%), Gaps = 30/391 (7%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSG----STKQQAIKSLTSQLKDMALKASGAYRH 56
           MLTCIA +KQ   ++    +  +          + + + IKSLTSQ+KDMA+KASGAY+ 
Sbjct: 1   MLTCIACTKQLNTNNGGSKKQEEDEEEEDRVIETPRSKQIKSLTSQIKDMAVKASGAYKS 60

Query: 57  CSPCTAPGAAQSRLKSNSGESD--ADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGI 114
           C PC+  G++      +  +SD  ++S RFR++Y+R GS SST P+   GKEME+RLKG 
Sbjct: 61  CKPCS--GSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSST-PKIL-GKEMESRLKGF 116

Query: 115 SSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFS 174
            S  GE TP +S+SGR    V   EE+E KEWVAQVEPGVLITFVSLP GGND+KRIRFS
Sbjct: 117 LS--GEGTP-ESMSGRTESTVFMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFS 173

Query: 175 RDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPP 234
           R+MF+KWQAQ+WWAEN+D+VMELYNVQ+FN+Q+ PLPTPPRSED SS+I+S +  P TPP
Sbjct: 174 REMFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPLPTPPRSEDGSSRIQSTKNGPATPP 233

Query: 235 LTRERLPRNLYRPTGMGMGYSSSDSLDHHP---MQARNYYDSGGLTSTPKLSSISGAKTE 291
           L +E            G GY+SS SL H P    Q+R ++DS GL +TPKLSSISG KTE
Sbjct: 234 LNKE---------CSRGKGYASSGSLAHQPTTQTQSR-HHDSSGLATTPKLSSISGTKTE 283

Query: 292 TSSMDASIRSSSSR---DADRSG-ELSISNASDLETEWVEQDEPGVYITIRALPGGKREL 347
           TSS+D S RSS SR   +AD SG ELS+SNASD+ETEWVEQDE GVYITIRALP G REL
Sbjct: 284 TSSVDESARSSFSREEEEADHSGEELSVSNASDIETEWVEQDEAGVYITIRALPDGTREL 343

Query: 348 RRVRFSREKFGEMHARLWWEENRARIHEQYL 378
           RRVRFSREKFGE +ARLWWE+NRARI +QYL
Sbjct: 344 RRVRFSREKFGETNARLWWEQNRARIQQQYL 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ09|BRXL3_ARATH Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=2

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/408 (56%), Positives = 276/408 (67%), Gaps = 68/408 (16%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGST--KQQAIKSLTSQLKDMALKASGAYRHCS 58
           MLTCIA +KQ   ++     + D   G   T   +QAIKSLTSQLKDMA+KASGAY++C 
Sbjct: 1   MLTCIACTKQLNTNNGGSTREEDEEHGVIGTPRTKQAIKSLTSQLKDMAVKASGAYKNCK 60

Query: 59  PCTAPGAAQSRLKSNSGESDA--DSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISS 116
           PC+  G        N  +SDA  DS RF +SY+R G+++ST P+  WG EME+RLKGISS
Sbjct: 61  PCS--GTTNRNQNRNYADSDAASDSGRFHYSYQRAGTATST-PKI-WGNEMESRLKGISS 116

Query: 117 SSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRF--- 173
             G  T   S+SGR  + +VF+E++E KEWVAQVEPGVLITFVSLP+GGNDLKRIRF   
Sbjct: 117 EEGTPT---SMSGR-TESIVFMEDDEVKEWVAQVEPGVLITFVSLPQGGNDLKRIRFRST 172

Query: 174 -----------------------SRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPL 210
                                   R+MFNKWQAQ+WW EN+++VMELYNVQ FN+Q+ PL
Sbjct: 173 RFPYYRDQLLLWCRQGWVFWPQNCREMFNKWQAQKWWVENFEKVMELYNVQ-FNQQSVPL 231

Query: 211 PTPPRSEDESSKIESVEESPVTPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNY 270
            TPP SED  S+I+SV++SPVTPPL RER  RN+                          
Sbjct: 232 QTPPVSEDGGSQIQSVKDSPVTPPLERERPHRNIP------------------------- 266

Query: 271 YDSGGLTSTPKLSSISGAKTETSSMDASIRSSSSRDADRSGELSISNASDLETEWVEQDE 330
             S G  STPKLSSISG KTETSS+D S RSSS    DRS E+S+SNASD+E+EWVEQDE
Sbjct: 267 -GSSGFASTPKLSSISGTKTETSSIDGSARSSS---VDRSEEVSVSNASDMESEWVEQDE 322

Query: 331 PGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL 378
           PG+YITIRALP G RELRRVRFSR+KFGE HARLWWE+NRARI +QYL
Sbjct: 323 PGIYITIRALPDGNRELRRVRFSRDKFGETHARLWWEQNRARIQQQYL 370

Arabidopsis thaliana (taxid: 3702)

>sp|Q6YUB8|BRXL1_ORYSJ Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/411 (57%), Positives = 271/411 (65%), Gaps = 47/411 (11%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSST------GSGS----TKQQAIKSLTSQLKDMALKA 50
           MLTCIA SKQ    +    E SD +       G+G     + +QAIK+LT+Q+KDMALKA
Sbjct: 1   MLTCIACSKQLAGGAPPLREQSDDADDAAVARGAGECATPSTRQAIKALTAQIKDMALKA 60

Query: 51  SGAYRHCSPCTAPGAAQS-----RLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGK 105
           SGAYRHC PC    ++       R       +D+ SDRF ++YRR GS    TP      
Sbjct: 61  SGAYRHCKPCAGSSSSSPAAGARRHHPYHAYADSGSDRFHYAYRRAGSGGDATP------ 114

Query: 106 EMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGG 165
            + AR   ++    E    +   G   D     E++E KEWVAQVEPGVLITF+SLP GG
Sbjct: 115 SVSARTDFLAGDEEEEEEEEEEEGTTADGS---EDDEAKEWVAQVEPGVLITFLSLPEGG 171

Query: 166 NDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIES 225
           NDLKRIRFSR++FNKWQAQRWWAENY++VMELYNVQRFN+Q  PLPT P+SEDES K   
Sbjct: 172 NDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQRFNQQT-PLPTTPKSEDESLK--- 227

Query: 226 VEESPVTPPLTRERLPRNLYRPT--GMGMGYSSSDSL-------------DHHPMQARNY 270
            E+ P TPPL  ERLP  L+R    G   GY   DSL              HH       
Sbjct: 228 -EDIPATPPLNSERLPHTLHRSLTGGRTTGYGQPDSLGHQHNLGNGHRQQHHHCYTGHQC 286

Query: 271 YDSGGLTSTPKLSSISGAKTETSSMDASIRSSSS-RDADRSGEL--SISNASDLETEWVE 327
           Y S GL STPKLSSISGAKTETSSMDAS+RSSSS  + DRS EL  S+SNASD E EWVE
Sbjct: 287 YGSVGLASTPKLSSISGAKTETSSMDASMRSSSSPEEVDRSRELSVSVSNASDQEREWVE 346

Query: 328 QDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL 378
           +DEPGVYITIRALPGG RELRRVRFSREKF EMHARLWWEENRARIH+QYL
Sbjct: 347 EDEPGVYITIRALPGGIRELRRVRFSREKFSEMHARLWWEENRARIHDQYL 397

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2

 Score =  291 bits (746), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 176/392 (44%), Positives = 234/392 (59%), Gaps = 62/392 (15%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           M +CIA +K  G + +    +  +  G+    ++A+KSLT Q+KDMALK SGAY+ C PC
Sbjct: 1   MFSCIACTKADGGEEV----EHGARGGTTPNTKEAVKSLTIQIKDMALKFSGAYKQCKPC 56

Query: 61  TAPGAAQSRLK-SNSGESDADSDRFRWSYRRTGSSSSTTPRTTW-------GKEMEARLK 112
           T  G++ S LK  +    D D+      Y   G S+ +TP   +          +E++  
Sbjct: 57  T--GSSSSPLKKGHRSFPDYDNASEGVPYPFMGGSAGSTPAWDFTNSSHHPAGRLESKFT 114

Query: 113 GISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIR 172
            I  +  E     S+S +  D  V ++++ PKEW+AQVEPGV ITF SLP GGNDLKRIR
Sbjct: 115 SIYGNDRE-----SISAQSCD--VVLDDDGPKEWMAQVEPGVHITFASLPTGGNDLKRIR 167

Query: 173 FSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDES------SKIESV 226
           FSR+MF+KWQAQRWW ENYD+++ELYNVQRFNRQA  L TP RS+D+S      SK++S 
Sbjct: 168 FSREMFDKWQAQRWWGENYDKIVELYNVQRFNRQA--LQTPARSDDQSQRDSTYSKMDSA 225

Query: 227 EESPVTPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSIS 286
            ES       ++  PR+ +RP G         S+ HH     + Y  G     P      
Sbjct: 226 RES-------KDWTPRHNFRPPG---------SVPHHFYGGSSNYGPGSYHGGPP----- 264

Query: 287 GAKTETSSMDASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRE 346
                   MDA+  ++SSRD       S+SNAS+++ EW+E+DEPGVYITIR L  G RE
Sbjct: 265 --------MDAARTTTSSRD----DPPSMSNASEMQAEWIEEDEPGVYITIRQLSDGTRE 312

Query: 347 LRRVRFSREKFGEMHARLWWEENRARIHEQYL 378
           LRRVRFSRE+FGE+HA+ WWE+NR RI  QYL
Sbjct: 313 LRRVRFSRERFGEVHAKTWWEQNRERIQTQYL 344

Acts as a regulator of cell proliferation and elongation in the root and shoot. Probable transcription regulator. Regulated by the auxin response factor ARF5. Polarly localized in vascular cells and subject to endocytic recycling. Required for CPD expression and for correct nuclear auxin response. Mediates cross-talk between the auxin and brassinosteroid pathways. BRX is a target for auxin-induced, proteasome-mediated degradation.

Arabidopsis thaliana (taxid: 3702)

>sp|O82281|BRXL1_ARATH Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2

 Score =  271 bits (692), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 176/390 (45%), Positives = 233/390 (59%), Gaps = 71/390 (18%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           M TCI  +K        + +++  ST   +  ++A+KSLT+Q+KDMA K SG+++   P 
Sbjct: 1   MFTCINCTKMADRGEEDEEDEARGSTTPNT--KEAVKSLTTQIKDMASKFSGSHKQSKP- 57

Query: 61  TAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTP-----RTTWGKEMEARLKGIS 115
             PG++ S L+      D D+      Y   G S+S+TP     R+++ +      +  S
Sbjct: 58  -TPGSSSSNLRKFP---DFDTASESVPYPYPGGSTSSTPAWDLPRSSYHQSGRPDSRFTS 113

Query: 116 SSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSR 175
              GE    +S+S +  D  V +E++EPKEW+AQVEPGV ITFVSLP GGNDLKRIRFSR
Sbjct: 114 MYGGER---ESISAQSCD--VVLEDDEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSR 168

Query: 176 DMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDES------SKIESVEES 229
           ++F+KWQAQRWW ENYDR++ELYNVQRFNRQA  L TP RSED+S      ++I+S  ES
Sbjct: 169 EVFDKWQAQRWWGENYDRIVELYNVQRFNRQA--LQTPGRSEDQSQRDSTYTRIDSARES 226

Query: 230 PVTPPLTRERLPR-NLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGA 288
                  R+   R N +RP G         S+ HH      +Y                 
Sbjct: 227 -------RDWTQRDNNFRPPG--------GSVPHH------FYG---------------- 249

Query: 289 KTETSSMDASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELR 348
                 MDA+  ++SSRD       S+SNAS+++ EWVE+DEPGVYITIR LP G RELR
Sbjct: 250 ----PPMDAARITTSSRDE----PPSMSNASEMQGEWVEEDEPGVYITIRQLPDGTRELR 301

Query: 349 RVRFSREKFGEMHARLWWEENRARIHEQYL 378
           RVRFSRE+FGE+HA+ WWE+NR RI  QYL
Sbjct: 302 RVRFSRERFGEVHAKTWWEQNRDRIQTQYL 331

May act as a regulator of cell proliferation and elongation in the root.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84T65|BRXL4_ORYSJ Protein Brevis radix-like 4 OS=Oryza sativa subsp. japonica GN=BRXL4 PE=3 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 196/362 (54%), Gaps = 60/362 (16%)

Query: 42  QLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFRWSYRRTG---SSSSTT 98
           QLKDM +K SG  RH       G+   R ++ S         +R  Y R G      +  
Sbjct: 3   QLKDMVMKLSGTSRHHGQQRRGGSPPPRGRTTS--------VYRSGYYRPGMVQDDMAVP 54

Query: 99  PRTTWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITF 158
           P T  G        G S SS  +TP    +     P     E E +EWVAQVEPGV ITF
Sbjct: 55  PATYLGG------GGTSMSSASSTPAWDFA----RPA----EGEAREWVAQVEPGVQITF 100

Query: 159 VSLPRGG-NDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSE 217
           VSL  GG NDLKRIRFSR+M++KWQAQ+WW EN +R+MELYNV+RF+RQ   LPTPPRS+
Sbjct: 101 VSLAGGGGNDLKRIRFSREMYDKWQAQKWWGENNERIMELYNVRRFSRQV--LPTPPRSD 158

Query: 218 DES-----SKIESVEESPV-TP---PLTRERLPR--NLYRPTGMGMGYSSSDSLDHHPMQ 266
           D       S++ S   SP  TP   PLT +R+       RP       S+S     H  +
Sbjct: 159 DGERESFYSQVGSTRGSPAATPSPAPLTPDRVTSWSAFVRPP------SASRQQQQHSFR 212

Query: 267 ARNYYDSGGLTSTPKL---------SSISGAKTETSSMDASIRSSSSRDADRSGELSISN 317
             +         + +          +  S A    +   A   S SSRD     E+SISN
Sbjct: 213 PLSPPPPSSSNPSERAWQQQQQPQRAGKSPAAASDAMDAARTTSCSSRD-----EVSISN 267

Query: 318 ASDLE-TEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQ 376
           AS+LE TEWV QDEPGVYIT+R L  G RELRRVRFSRE+F E++A+LWWEEN+ RI  Q
Sbjct: 268 ASELEVTEWVIQDEPGVYITVRELADGTRELRRVRFSRERFAELNAKLWWEENKERIQAQ 327

Query: 377 YL 378
           YL
Sbjct: 328 YL 329

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZIK7|BRXL2_ORYSJ Protein Brevis radix-like 2 OS=Oryza sativa subsp. japonica GN=BRXL2 PE=2 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 67/94 (71%), Gaps = 4/94 (4%)

Query: 286 SGAKTETSSMDASIRSSSSRDADRSGELSISNASDLE-TEWVEQDEPGVYITIRALPGGK 344
           S A    +  D S  ++SSRD      +SISNASDLE TEWVEQDEPGV ITIR    G 
Sbjct: 321 SAAAGPAAPYDPSRGTTSSRD---EASVSISNASDLEATEWVEQDEPGVSITIREFGDGT 377

Query: 345 RELRRVRFSREKFGEMHARLWWEENRARIHEQYL 378
           RELRRVRFSRE+FGE  A++WWE+NR RIH QYL
Sbjct: 378 RELRRVRFSRERFGEERAKVWWEQNRDRIHAQYL 411

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XPT0|BRXL3_ORYSJ Putative protein Brevis radix-like 3 OS=Oryza sativa subsp. japonica GN=BRXL3 PE=3 SV=2

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 108/220 (49%), Gaps = 30/220 (13%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTK-QQAIKSLTSQLKDMALKASGA--YRHC 57
           ML CIA S + G +        D S G+ +   + A+KSLTSQLKDM LK SG+  ++H 
Sbjct: 1   MLACIACSSKEGGE--------DGSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHY 52

Query: 58  SPCTA--------------PGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTW 103
              TA              PG         +     ++  +  +       +++T   TW
Sbjct: 53  KAATAGSPSFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATW 112

Query: 104 GKEMEARLKGISSSSGEA----TPIKSVSGRR-VDPVVFIEENEPKEWVAQVEPGVLITF 158
                   +G    +G +    T I+S+      D V  +E+  P+EW AQVEPGV ITF
Sbjct: 113 DMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITF 172

Query: 159 VSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELY 198
           V+LP GGNDLKRIRFSR+ F + +A+ WW  N DR+   Y
Sbjct: 173 VTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QWK1|BRXL5_ORYSJ Putative protein Brevis radix-like 5 OS=Oryza sativa subsp. japonica GN=BRXL5 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 324 EWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQY 377
           EWVE+ EPGV+IT+ A PG + +LR V  SREKFGE+ AR+WWEEN+AR+H  Y
Sbjct: 268 EWVEEYEPGVFITVGAYPGHRLQLRCVELSREKFGEVKARVWWEENKARLHHLY 321

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
224091170	377	predicted protein [Populus trichocarpa]	0.986	0.989	0.856	0.0
225444796	371	PREDICTED: protein Brevis radix-like 4-l	0.981	1.0	0.830	1e-180
255546021	403	Ran GTPase binding protein, putative [Ri	0.923	0.866	0.865	1e-173
224142746	364	predicted protein [Populus trichocarpa]	0.947	0.983	0.809	1e-173
356547921	366	PREDICTED: protein Brevis radix-like 4-l	0.965	0.997	0.812	1e-171
449446614	371	PREDICTED: protein Brevis radix-like 4-l	0.981	1.0	0.833	1e-169
356565844	366	PREDICTED: protein Brevis radix-like 4-l	0.965	0.997	0.804	1e-168
147780466	560	hypothetical protein VITISV_000759 [Viti	0.925	0.625	0.812	1e-164
225442168	371	PREDICTED: protein Brevis radix-like 2 i	0.976	0.994	0.75	1e-155
255560669	372	Ran GTPase binding protein, putative [Ri	0.970	0.986	0.757	1e-155

>gi|224091170|ref|XP_002309199.1| predicted protein [Populus trichocarpa] gi|222855175|gb|EEE92722.1| predicted protein [Populus trichocarpa]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/382 (85%), Positives = 347/382 (90%), Gaps = 9/382 (2%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCIARSKQP   + +      S+      +QQAIKSLTSQLKDMALKASGAYRHC+PC
Sbjct: 1   MLTCIARSKQPAATTANH---HPSAAKQQQQQQQAIKSLTSQLKDMALKASGAYRHCNPC 57

Query: 61  TAPGAA-QSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSG 119
           TAP    QSRL+SNS ESDA+S++FRWS RRTGSSSSTTPRT WGKEMEARLKGISSSSG
Sbjct: 58  TAPNTTTQSRLRSNSTESDAESEKFRWSLRRTGSSSSTTPRT-WGKEMEARLKGISSSSG 116

Query: 120 EATPIKSV--SGRRVDP-VVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRD 176
           E TP  SV  SGRRVDP +VF+EE EPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRD
Sbjct: 117 EGTP-NSVNGSGRRVDPPIVFVEEKEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRD 175

Query: 177 MFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLT 236
           MFNKWQAQRWWAENYDR+MELYNVQRFNRQAFPLPTPPRSEDESSK+ES E+SPVTPPL 
Sbjct: 176 MFNKWQAQRWWAENYDRIMELYNVQRFNRQAFPLPTPPRSEDESSKMESAEDSPVTPPLN 235

Query: 237 RERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMD 296
           RERLPRNLYRPTGMGMGYSSSDSLDHHP+QAR+Y DS G TSTPKLSSISGAKTETSSMD
Sbjct: 236 RERLPRNLYRPTGMGMGYSSSDSLDHHPLQARHYCDSIGFTSTPKLSSISGAKTETSSMD 295

Query: 297 ASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREK 356
           ASIRSSSSR+ADRSGELSISNASD+ETEWVEQDEPGVYITIRALPGGKRELRRVRFSRE+
Sbjct: 296 ASIRSSSSREADRSGELSISNASDMETEWVEQDEPGVYITIRALPGGKRELRRVRFSRER 355

Query: 357 FGEMHARLWWEENRARIHEQYL 378
           FGEMHAR+WWEENRARIHEQYL
Sbjct: 356 FGEMHARVWWEENRARIHEQYL 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444796|ref|XP_002280093.1| PREDICTED: protein Brevis radix-like 4-like [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/378 (83%), Positives = 345/378 (91%), Gaps = 7/378 (1%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCI RSKQ  D+SL Q E++++S   G TKQQ+IK+LT Q+KDMALKA+GAYR+C+PC
Sbjct: 1   MLTCITRSKQLSDESLKQTEEANASNTPG-TKQQSIKALTCQIKDMALKATGAYRNCNPC 59

Query: 61  TAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSGE 120
           +A    QSR  + S  + A S+RFRWSYRRTGSSSSTTPR  WGKEMEARLKG+SS  GE
Sbjct: 60  SASVQHQSRSYAESDSASA-SERFRWSYRRTGSSSSTTPR--WGKEMEARLKGLSS--GE 114

Query: 121 ATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNK 180
            TP  S SGRRV+ VVF+EENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSR+MFNK
Sbjct: 115 GTPA-SASGRRVESVVFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNK 173

Query: 181 WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRERL 240
           WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSK+ES E+SPVTPPLT+ERL
Sbjct: 174 WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKMESAEDSPVTPPLTKERL 233

Query: 241 PRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMDASIR 300
           PRNLYRP+G+GMGYSSSDSLDHHPMQ R++YDSGGLTSTPKLSSISGAKTETSSMDASIR
Sbjct: 234 PRNLYRPSGLGMGYSSSDSLDHHPMQPRHFYDSGGLTSTPKLSSISGAKTETSSMDASIR 293

Query: 301 SSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEM 360
           +SSSR+ADRSGELS+SNASDLETEWVE+DEPGVYITIRALPGG RELRRVRFSRE+FGEM
Sbjct: 294 TSSSREADRSGELSVSNASDLETEWVEEDEPGVYITIRALPGGTRELRRVRFSRERFGEM 353

Query: 361 HARLWWEENRARIHEQYL 378
           HARLWWEENRARIHEQYL
Sbjct: 354 HARLWWEENRARIHEQYL 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546021|ref|XP_002514070.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223546526|gb|EEF48024.1| Ran GTPase binding protein, putative [Ricinus communis]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 310/358 (86%), Positives = 335/358 (93%), Gaps = 9/358 (2%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGST---KQQAIKSLTSQLKDMALKASGAYRHC 57
           MLTCIARSKQPGDDSLSQP++S ++T + +    + QAIKSLTSQL+DMALKASGAYRHC
Sbjct: 1   MLTCIARSKQPGDDSLSQPDNSAATTTTTANNAKQHQAIKSLTSQLRDMALKASGAYRHC 60

Query: 58  SPCTAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSS 117
           +PCTAP  +Q+R +++S ESDA+S+RFRWS RRTGSSSSTTPRT WGKEMEARLKGISSS
Sbjct: 61  NPCTAP-TSQNRFRNSSNESDAESERFRWSLRRTGSSSSTTPRT-WGKEMEARLKGISSS 118

Query: 118 SGEATPIKSV--SGRRVDP-VVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFS 174
           SGE TP  SV  SGRRVDP +VF+EENEPKEWVAQVEPGVLITFVSLP GGNDLKRIRFS
Sbjct: 119 SGEGTP-NSVNGSGRRVDPPIVFVEENEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFS 177

Query: 175 RDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPP 234
           RDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSK+ES+E+SPVTPP
Sbjct: 178 RDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKMESIEDSPVTPP 237

Query: 235 LTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSS 294
           LT+ERLPRNLYRP GMGMGYSSSDSLDHHPMQAR+Y DSGGLTSTPKLSSISGAKTETSS
Sbjct: 238 LTKERLPRNLYRPAGMGMGYSSSDSLDHHPMQARHYCDSGGLTSTPKLSSISGAKTETSS 297

Query: 295 MDASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRF 352
           MDASIRSSSSR+ADRSGELSISNASD+ETEWVEQDEPGVYITIRALPGGKRELRRVRF
Sbjct: 298 MDASIRSSSSREADRSGELSISNASDMETEWVEQDEPGVYITIRALPGGKRELRRVRF 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142746|ref|XP_002324714.1| predicted protein [Populus trichocarpa] gi|222866148|gb|EEF03279.1| predicted protein [Populus trichocarpa]

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 311/384 (80%), Positives = 332/384 (86%), Gaps = 26/384 (6%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCIARSKQPGDDSL+                  IKSLTSQLKDMALKASGAYRHC+PC
Sbjct: 1   MLTCIARSKQPGDDSLT------------------IKSLTSQLKDMALKASGAYRHCNPC 42

Query: 61  TAPGAA---QSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSS 117
           T P      QSRL+SN   SDA+S+RFRW  +RTGSSSS TPRT WGKEMEARLKGISSS
Sbjct: 43  TVPTTTTTTQSRLRSNWTASDAESERFRWPLQRTGSSSSITPRT-WGKEMEARLKGISSS 101

Query: 118 SGEATPIKSV--SGRRVDP-VVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFS 174
           SGE TP  SV  SGRRVDP + F+EE EPKEWVAQVEPGVLIT VSLPRGGNDLKRIRFS
Sbjct: 102 SGEGTP-NSVNSSGRRVDPPIAFVEEKEPKEWVAQVEPGVLITLVSLPRGGNDLKRIRFS 160

Query: 175 RDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPP 234
           RDMFNKWQAQRWWAENYDR+MELYNVQRFN QAFPLP PPRSEDESSK+ES E+ PVTPP
Sbjct: 161 RDMFNKWQAQRWWAENYDRIMELYNVQRFNCQAFPLPPPPRSEDESSKMESAEDIPVTPP 220

Query: 235 LTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSS 294
           L RERLPRNLYRPTG GMGYSSSDSLDHHP+QAR+Y DS GLTSTPKLSSISGAKTETSS
Sbjct: 221 LNRERLPRNLYRPTGTGMGYSSSDSLDHHPIQARHYCDSTGLTSTPKLSSISGAKTETSS 280

Query: 295 MDASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSR 354
           MDASIRSSSSR+AD SGELSISNASD+ETEWVEQDE GVYITIRALPGGKRE+RRVRFSR
Sbjct: 281 MDASIRSSSSREADCSGELSISNASDMETEWVEQDEQGVYITIRALPGGKREIRRVRFSR 340

Query: 355 EKFGEMHARLWWEENRARIHEQYL 378
           E+FGE HA++WWEENRARIH+QY+
Sbjct: 341 ERFGETHAKVWWEENRARIHQQYM 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547921|ref|XP_003542353.1| PREDICTED: protein Brevis radix-like 4-like [Glycine max]

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 308/379 (81%), Positives = 336/379 (88%), Gaps = 14/379 (3%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCIAR K+P        ++SD +  + + K QA+KSLTSQ++DMALKASGAY+HC+PC
Sbjct: 1   MLTCIARPKKP--------DESDPNNATSAAKSQAVKSLTSQIRDMALKASGAYKHCAPC 52

Query: 61  TAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSGE 120
           T P A Q R +SN+ ESDADSDRFRWSYRRTGSSSSTT   TWGKEMEARLKGISS  GE
Sbjct: 53  TGP-ATQGRFRSNTTESDADSDRFRWSYRRTGSSSSTT-TRTWGKEMEARLKGISS--GE 108

Query: 121 ATPIKSVSGRRVDPVV-FIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFN 179
            TP  S SGRR +PVV F+EENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSR+MFN
Sbjct: 109 GTP-NSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFN 167

Query: 180 KWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRER 239
           KWQAQRWWAENYD+VMELYNVQRFNRQAFPLPTPPRSEDESSK+ES EESPVTPPL RER
Sbjct: 168 KWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEESPVTPPLNRER 227

Query: 240 LPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMDASI 299
           LPRN+YRPTGMGMGYSSSDS DH  MQ+R++YDS G+ STPK+S+IS AKTE SSMDASI
Sbjct: 228 LPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMDASI 287

Query: 300 RSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGE 359
           RSSSSR+ADRSG+ SISNASDLETEWVEQDEPGVYITIRALPGG REL+RVRFSREKFGE
Sbjct: 288 RSSSSREADRSGDFSISNASDLETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGE 347

Query: 360 MHARLWWEENRARIHEQYL 378
           MHARLWWEENRARIHEQYL
Sbjct: 348 MHARLWWEENRARIHEQYL 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446614|ref|XP_004141066.1| PREDICTED: protein Brevis radix-like 4-like [Cucumis sativus] gi|449488067|ref|XP_004157931.1| PREDICTED: protein Brevis radix-like 4-like [Cucumis sativus]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/378 (83%), Positives = 340/378 (89%), Gaps = 7/378 (1%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCIARSK+ GD SLSQ E+ DS  G    KQQ++KSLT QL+DMALKASG+YR C+PC
Sbjct: 1   MLTCIARSKKLGDASLSQIEEPDSDNGL-ENKQQSVKSLTGQLRDMALKASGSYRTCNPC 59

Query: 61  TAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSGE 120
             P   QSRLK+ S +SDADS+RF+W+Y+R+GS SST  RT WGKEMEARLKGISS  GE
Sbjct: 60  AGP-IPQSRLKNCSSQSDADSERFKWAYKRSGSLSSTKTRT-WGKEMEARLKGISS--GE 115

Query: 121 ATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNK 180
            TP  S+SGRRVDPVV++EE+EPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRD+FNK
Sbjct: 116 GTP-NSLSGRRVDPVVYVEESEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDVFNK 174

Query: 181 WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRERL 240
           WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVE SPVTPPLT ERL
Sbjct: 175 WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVENSPVTPPLTTERL 234

Query: 241 PRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMDASIR 300
           PRNLYRP G G+ YSSSDSL++ PMQ R Y DS GLTSTPKLSSISGAKTETSS+DAS+R
Sbjct: 235 PRNLYRPIGAGVSYSSSDSLEYQPMQYRQYQDS-GLTSTPKLSSISGAKTETSSIDASMR 293

Query: 301 SSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEM 360
           SSSSRDADRSGELSISNASDLE+EWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEM
Sbjct: 294 SSSSRDADRSGELSISNASDLESEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEM 353

Query: 361 HARLWWEENRARIHEQYL 378
           HARLWWEENRARIHEQYL
Sbjct: 354 HARLWWEENRARIHEQYL 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565844|ref|XP_003551146.1| PREDICTED: protein Brevis radix-like 4-like [Glycine max]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 305/379 (80%), Positives = 334/379 (88%), Gaps = 14/379 (3%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCIAR K+P        ++SD    + + K QAIKSLTSQ++DMALKASGAY+HC+PC
Sbjct: 1   MLTCIARPKKP--------DESDPDNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPC 52

Query: 61  TAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSGE 120
           T P A Q R++SN+ E DADSDRFRWSYRRTGSSSSTT   TWGKEMEARLKGISS  GE
Sbjct: 53  TGP-ATQGRVRSNATELDADSDRFRWSYRRTGSSSSTT-TRTWGKEMEARLKGISS--GE 108

Query: 121 ATPIKSVSGRRVDPVV-FIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFN 179
            TP  S SGRR +PVV F+EENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSR+MFN
Sbjct: 109 GTP-NSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFN 167

Query: 180 KWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRER 239
           KWQAQRWWAENYD+VMELYNVQRFNRQAFPLPTP RSEDESSK+ESVEESPVTPPL  ER
Sbjct: 168 KWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPLRSEDESSKLESVEESPVTPPLNSER 227

Query: 240 LPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMDASI 299
           LPRN+YRPTGMGMGYSSSDS DH  MQ+R++YDS G+ STPK+S+IS AKTE SSM+ASI
Sbjct: 228 LPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMEASI 287

Query: 300 RSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGE 359
           RSSSSR+ADRSG+ SISNAS+LETEWVEQDEPGVYITIRALPGG REL+RVRFSREKFGE
Sbjct: 288 RSSSSREADRSGDFSISNASELETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGE 347

Query: 360 MHARLWWEENRARIHEQYL 378
           MHARLWWEENRARIHEQYL
Sbjct: 348 MHARLWWEENRARIHEQYL 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780466|emb|CAN62547.1| hypothetical protein VITISV_000759 [Vitis vinifera]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/357 (81%), Positives = 322/357 (90%), Gaps = 7/357 (1%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCI RSKQ  D+SL Q E++++S   G TKQQ+IK+LT Q+KDMALKA+GAYR+C+PC
Sbjct: 120 MLTCITRSKQLSDESLKQTEEANASNTPG-TKQQSIKALTCQIKDMALKATGAYRNCNPC 178

Query: 61  TAPGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSGE 120
           +A    QSR  + S +S + S+RFRWSYRRTGSSSSTTPR  WGKEMEARLKG+SS  GE
Sbjct: 179 SASVQHQSRSYAES-DSASASERFRWSYRRTGSSSSTTPR--WGKEMEARLKGLSS--GE 233

Query: 121 ATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNK 180
            TP  S SGRRV+ VVF+EENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSR+MFNK
Sbjct: 234 GTPA-SASGRRVESVVFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNK 292

Query: 181 WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRERL 240
           WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSK+ES E+SPVTPPLT+ERL
Sbjct: 293 WQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKMESAEDSPVTPPLTKERL 352

Query: 241 PRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMDASIR 300
           PRNLYRP+G+GMGYSSSDSLDHHPMQ R++YDSGGLTSTPKLSSISGAKTETSSMDASIR
Sbjct: 353 PRNLYRPSGLGMGYSSSDSLDHHPMQPRHFYDSGGLTSTPKLSSISGAKTETSSMDASIR 412

Query: 301 SSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKF 357
           +SSSR+ADRSGELS+SNASDLETEWVE+DEPGVYITIRALPGG RELRRVRF +  F
Sbjct: 413 TSSSREADRSGELSVSNASDLETEWVEEDEPGVYITIRALPGGTRELRRVRFRQVNF 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442168|ref|XP_002276168.1| PREDICTED: protein Brevis radix-like 2 isoform 2 [Vitis vinifera] gi|297743026|emb|CBI35893.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/380 (75%), Positives = 326/380 (85%), Gaps = 11/380 (2%)

Query: 1   MLTCIARSKQPGDDSLSQPEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
           MLTCIA SKQ    SL + E+ +    +  + + AIK+LT+Q+KDMALKASGAYR+C PC
Sbjct: 1   MLTCIACSKQVSGRSLHEQEEGEGEAVATPSTKHAIKALTAQIKDMALKASGAYRNCKPC 60

Query: 61  T-APGAAQSRLKSNSGESDADSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGISSSSG 119
           + + G  Q R  ++S ES +DS RF  SYRRTGSSSST PR   GKEMEAR K +SS  G
Sbjct: 61  SGSSGQNQDRNYADS-ESASDSARFHCSYRRTGSSSST-PRLL-GKEMEARSKRLSS--G 115

Query: 120 EATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFN 179
           E TP  SVSGR  + VVF+EE+EPKEW+AQVEPGVLITFVS+P+GGNDLKRIRFSR++FN
Sbjct: 116 EGTP-ASVSGR-AESVVFMEEDEPKEWIAQVEPGVLITFVSMPQGGNDLKRIRFSREIFN 173

Query: 180 KWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRER 239
           KWQAQRWWAENYD+VMELYNVQRFNRQA PLPTPPRSEDESS++ES++ SPVTPPL++ER
Sbjct: 174 KWQAQRWWAENYDKVMELYNVQRFNRQAVPLPTPPRSEDESSRMESIQNSPVTPPLSKER 233

Query: 240 LPRNLY-RPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSMDAS 298
           LPRN + RPTGMG  YSSSDSLDHHP+Q+R+YYDS GL STPKLSSISGAKTETSS+DAS
Sbjct: 234 LPRNFHHRPTGMG--YSSSDSLDHHPLQSRHYYDSAGLASTPKLSSISGAKTETSSIDAS 291

Query: 299 IRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFG 358
           +R+SSSR+ADRSGELSISNASD+ETEWVEQDEPGVYITIRALP G RELRRVRFSRE+FG
Sbjct: 292 VRTSSSREADRSGELSISNASDMETEWVEQDEPGVYITIRALPDGTRELRRVRFSRERFG 351

Query: 359 EMHARLWWEENRARIHEQYL 378
           EMHARLWWEENRARI EQYL
Sbjct: 352 EMHARLWWEENRARIQEQYL 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560669|ref|XP_002521348.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223539426|gb|EEF41016.1| Ran GTPase binding protein, putative [Ricinus communis]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 290/383 (75%), Positives = 321/383 (83%), Gaps = 16/383 (4%)

Query: 1   MLTCIARSKQPGDDSLSQ---PEDSDSSTGSGSTKQQAIKSLTSQLKDMALKASGAYRHC 57
           MLTCIA SKQ  + SL Q    ED D +  +  T+Q  IK++T+Q+KDMA+KASGAYR+C
Sbjct: 1   MLTCIACSKQLNNGSLHQREREEDDDDAMETPRTRQ-TIKAITAQIKDMAIKASGAYRNC 59

Query: 58  SPCTAPGAAQSRLKSNSGESDA--DSDRFRWSYRRTGSSSSTTPRTTWGKEMEARLKGIS 115
            PC+  G++ +    N  ESDA  DS RF  SYRRTGSS+ST PR  WGKEMEARLKG+S
Sbjct: 60  KPCS--GSSNNNHNENYAESDAISDSARFHCSYRRTGSSNST-PRL-WGKEMEARLKGLS 115

Query: 116 SSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSR 175
           SS GE TP  SVSGR  + VVF+EE EPKEWVAQVEPGVLITFVSLP+GGNDLKRIRFSR
Sbjct: 116 SS-GEGTPA-SVSGR-AESVVFMEEEEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSR 172

Query: 176 DMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPL 235
           +MFNKWQAQRWWAENYD+VMELYNVQRFN QA PLPTPPRSEDESSK ES ++SP TPPL
Sbjct: 173 EMFNKWQAQRWWAENYDKVMELYNVQRFNHQAVPLPTPPRSEDESSKPESAKDSPATPPL 232

Query: 236 TRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTETSSM 295
            +ER PRNLYRPTGMG  YSSSDSLDHHPMQ+R YYDS GL STPKLSSISGAKTE SS+
Sbjct: 233 GKER-PRNLYRPTGMG--YSSSDSLDHHPMQSRQYYDSVGLASTPKLSSISGAKTEASSV 289

Query: 296 DASIRSSSSRDADRSGELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSRE 355
             S R+SSSRDAD SGELS+SNASD+ETEWVEQDEPGVYITIRALPGG RELRRVRFSRE
Sbjct: 290 GGSARTSSSRDADHSGELSVSNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSRE 349

Query: 356 KFGEMHARLWWEENRARIHEQYL 378
           +FGEMHARLWW+ENRARI EQYL
Sbjct: 350 RFGEMHARLWWDENRARIQEQYL 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2149897	384	BRXL4 "AT5G20540" [Arabidopsis	0.965	0.950	0.647	2.3e-126
TAIR|locus:2088212	374	ATBRXL2 "AT3G14000" [Arabidops	0.962	0.973	0.551	6.2e-101
TAIR|locus:2014345	370	BRX-LIKE3 "AT1G54180" [Arabido	0.933	0.954	0.465	1.5e-74
TAIR|locus:2034486	344	BRX "BREVIS RADIX" [Arabidopsi	0.706	0.776	0.404	4.2e-71
TAIR|locus:2058694	331	BRXL1 "AT2G35600" [Arabidopsis	0.714	0.815	0.395	7.7e-68
TAIR|locus:2046997	158	AT2G21030 "AT2G21030" [Arabido	0.322	0.772	0.474	2.6e-30
TAIR|locus:505006603	1075	AT5G12350 "AT5G12350" [Arabido	0.177	0.062	0.582	8.1e-17
TAIR|locus:2025277	1103	PRAF1 "AT1G76950" [Arabidopsis	0.174	0.059	0.545	1.3e-15
TAIR|locus:2165770	1073	AT5G42140 "AT5G42140" [Arabido	0.169	0.059	0.609	1.2e-14
TAIR|locus:2009739	1006	AT1G65920 [Arabidopsis thalian	0.164	0.061	0.5	1.3e-09

TAIR|locus:2149897 BRXL4 "AT5G20540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
 Identities = 257/397 (64%), Positives = 291/397 (73%)

Query:     1 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
             MLTCIARSK+ GD+S  QP+                KSLTSQLKDMALKASGAYRHC+PC
Sbjct:     1 MLTCIARSKRAGDESSGQPDDPDSKNA---------KSLTSQLKDMALKASGAYRHCTPC 51

Query:    61 TAP---GAAQSRLKSN----SGESDADSD-RFXXXXXXXXXXXXXXXXXX---------W 103
             TA    G  Q  +K+N    S +SD +SD RF                           W
Sbjct:    52 TAAQGQGQGQGPIKNNPSSSSVKSDFESDQRFKMLYGRSNSSITATAAVAATQQQQPRVW 111

Query:   104 GKEMEARLKGISSSSGEATPIKSVSGR-RVDPVVFIEENEPKEWVAQVEPGVLITFVSLP 162
             GKEMEARLKGISS  GEATP KS SGR RVDP+VF+EE EPKEWVAQVEPGVLITFVSLP
Sbjct:   112 GKEMEARLKGISS--GEATP-KSASGRNRVDPIVFVEEKEPKEWVAQVEPGVLITFVSLP 168

Query:   163 RGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSK 222
              GGNDLKRIRFSRDMFNK QAQRWWA+NYD+VMELYNVQ+ +RQAFPLPTPPRSEDE++K
Sbjct:   169 GGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSRQAFPLPTPPRSEDENAK 228

Query:   223 IE-SVEESPVTPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPK 281
             +E   E++P TPPL +ERLPR ++RP G+   YSSSDSLDH+ MQ++ +YDSG L STPK
Sbjct:   229 VEYHPEDTPATPPLNKERLPRTIHRPPGLA-AYSSSDSLDHNSMQSQQFYDSGLLNSTPK 287

Query:   282 LSSISGAKTETXXXXXXXXXXXXXXXXXXGELSISNASDLETEWVEQDEPGVYITIRALP 341
             +SSIS AKTET                   E+S+SNASD++ EWVEQDEPGVYITI+ LP
Sbjct:   288 VSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNEWVEQDEPGVYITIKVLP 347

Query:   342 GGKRELRRVRFSREKFGEMHARLWWEENRARIHEQYL 378
             GGKRELRRVRFSRE+FGEMHARLWWEENRARIHEQYL
Sbjct:   348 GGKRELRRVRFSRERFGEMHARLWWEENRARIHEQYL 384

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2088212 ATBRXL2 "AT3G14000" [Arabidopsis thaliana (taxid:3702)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 214/388 (55%), Positives = 256/388 (65%)

Query:     1 MLTCIARSKQ----PGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRH 56
             MLTCIA +KQ     G     + +           + + IKSLTSQ+KDMA+KASGAY+ 
Sbjct:     1 MLTCIACTKQLNTNNGGSKKQEEDEEEEDRVIETPRSKQIKSLTSQIKDMAVKASGAYKS 60

Query:    57 CSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISS 116
             C PC+  G++      +  +SD  S+                     GKEME+RLKG  S
Sbjct:    61 CKPCS--GSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLS 118

Query:   117 SSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRD 176
               GE TP +S+SGR    V   EE+E KEWVAQVEPGVLITFVSLP GGND+KRIRFSR+
Sbjct:   119 --GEGTP-ESMSGRTESTVFMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSRE 175

Query:   177 MFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLT 236
             MF+KWQAQ+WWAEN+D+VMELYNVQ+FN+Q+ PLPTPPRSED SS+I+S +  P TPPL 
Sbjct:   176 MFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPLPTPPRSEDGSSRIQSTKNGPATPPLN 235

Query:   237 RERLPRNLYRPTGMGMGYSSSDSLDHHPM-QARN-YYDSGGLTSTPKLSSISGAKTETXX 294
             +E            G GY+SS SL H P  Q ++ ++DS GL +TPKLSSISG KTET  
Sbjct:   236 KE---------CSRGKGYASSGSLAHQPTTQTQSRHHDSSGLATTPKLSSISGTKTETSS 286

Query:   295 XXXXXXXXXXXX---XXXXGE-LSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRV 350
                                GE LS+SNASD+ETEWVEQDE GVYITIRALP G RELRRV
Sbjct:   287 VDESARSSFSREEEEADHSGEELSVSNASDIETEWVEQDEAGVYITIRALPDGTRELRRV 346

Query:   351 RFSREKFGEMHARLWWEENRARIHEQYL 378
             RFSREKFGE +ARLWWE+NRARI +QYL
Sbjct:   347 RFSREKFGETNARLWWEQNRARIQQQYL 374

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014345 BRX-LIKE3 "AT1G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 184/395 (46%), Positives = 226/395 (57%)

Query:     1 MLTCIARSKQ--PGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCS 58
             MLTCIA +KQ    +   ++ E            +QAIKSLTSQLKDMA+KASGAY++C 
Sbjct:     1 MLTCIACTKQLNTNNGGSTREEDEEHGVIGTPRTKQAIKSLTSQLKDMAVKASGAYKNCK 60

Query:    59 PCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISSSS 118
             PC+  G        N  +SDA SD                    WG EME+RLKGISS  
Sbjct:    61 PCS--GTTNRNQNRNYADSDAASDSGRFHYSYQRAGTATSTPKIWGNEMESRLKGISSEE 118

Query:   119 GEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFS---- 174
             G  TP  S+SGR  + +VF+E++E KEWVAQVEPGVLITFVSLP+GGNDLKRIRF     
Sbjct:   119 G--TPT-SMSGR-TESIVFMEDDEVKEWVAQVEPGVLITFVSLPQGGNDLKRIRFRSTRF 174

Query:   175 ---RDMFNKWQAQRW--WAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEES 229
                RD    W  Q W  W +N   +   +  Q++  + F          E   ++  ++S
Sbjct:   175 PYYRDQLLLWCRQGWVFWPQNCREMFNKWQAQKWWVENF------EKVMELYNVQFNQQS 228

Query:   230 -PV-TPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQA----RNYYDSGGLTSTPKLS 283
              P+ TPP++ +          G     S  DS    P++     RN   S G  STPKLS
Sbjct:   229 VPLQTPPVSED----------GGSQIQSVKDSPVTPPLERERPHRNIPGSSGFASTPKLS 278

Query:   284 SISGAKTETXXXXXXXXXXXXXXXXXXGELSISNASDLETEWVEQDEPGVYITIRALPGG 343
             SISG KTET                   E+S+SNASD+E+EWVEQDEPG+YITIRALP G
Sbjct:   279 SISGTKTETSSIDGSARSSSVDRSE---EVSVSNASDMESEWVEQDEPGIYITIRALPDG 335

Query:   344 KRELRRVRFSREKFGEMHARLWWEENRARIHEQYL 378
              RELRRVRFSR+KFGE HARLWWE+NRARI +QYL
Sbjct:   336 NRELRRVRFSRDKFGETHARLWWEQNRARIQQQYL 370

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034486 BRX "BREVIS RADIX" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 120/297 (40%), Positives = 160/297 (53%)

Query:     1 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
             M +CIA +K  G + +   E           K+ A+KSLT Q+KDMALK SGAY+ C PC
Sbjct:     1 MFSCIACTKADGGEEV---EHGARGGTTPNTKE-AVKSLTIQIKDMALKFSGAYKQCKPC 56

Query:    61 TAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXW-----GKEMEARLKGIS 115
             T  G++ S LK     S  D D                    W           RL+   
Sbjct:    57 T--GSSSSPLKKGH-RSFPDYDNASEGVPYPFMGGSAGSTPAWDFTNSSHHPAGRLES-K 112

Query:   116 SSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSR 175
              +S      +S+S +  D  V ++++ PKEW+AQVEPGV ITF SLP GGNDLKRIRFSR
Sbjct:   113 FTSIYGNDRESISAQSCD--VVLDDDGPKEWMAQVEPGVHITFASLPTGGNDLKRIRFSR 170

Query:   176 DMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPL 235
             +MF+KWQAQRWW ENYD+++ELYNVQRFNRQA  L TP RS+D+S + +S      +   
Sbjct:   171 EMFDKWQAQRWWGENYDKIVELYNVQRFNRQA--LQTPARSDDQSQR-DSTYSKMDSARE 227

Query:   236 TRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGGLTSTPKLSSISGAKTET 292
             +++  PR+ +RP G         S+ HH     + Y  G     P + +   A+T T
Sbjct:   228 SKDWTPRHNFRPPG---------SVPHHFYGGSSNYGPGSYHGGPPMDA---ARTTT 272

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0015250 "water channel activity" evidence=ISS

GO:0048364 "root development" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2058694 BRXL1 "AT2G35600" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
 Identities = 118/298 (39%), Positives = 161/298 (54%)

Query:     1 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPC 60
             M TCI  +K    D   + E            ++A+KSLT+Q+KDMA K SG+++   P 
Sbjct:     1 MFTCINCTKMA--DRGEEDEEDEARGSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKP- 57

Query:    61 TAPGAAQSRL-KSNSGESDADSDRFXXXXXXXXXXXXXXX-XXXWGKEMEARLKGISSSS 118
               PG++ S L K    ++ ++S  +                   + +      +  S   
Sbjct:    58 -TPGSSSSNLRKFPDFDTASESVPYPYPGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYG 116

Query:   119 GEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMF 178
             GE    +S+S +  D  V +E++EPKEW+AQVEPGV ITFVSLP GGNDLKRIRFSR++F
Sbjct:   117 GER---ESISAQSCD--VVLEDDEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVF 171

Query:   179 NKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKIESVEESPVTPPLTRE 238
             +KWQAQRWW ENYDR++ELYNVQRFNRQA  L TP RSED+S + +S      +   +R+
Sbjct:   172 DKWQAQRWWGENYDRIVELYNVQRFNRQA--LQTPGRSEDQSQR-DSTYTRIDSARESRD 228

Query:   239 RLPR-NLYRPTGMGMGYSSSDSLDHH----PMQARNYYDSGGLTSTPKLSSISGAKTE 291
                R N +RP G         S+ HH    PM A     S      P +S+ S  + E
Sbjct:   229 WTQRDNNFRPPG--------GSVPHHFYGPPMDAARITTSSR-DEPPSMSNASEMQGE 277

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046997 AT2G21030 "AT2G21030" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 65/137 (47%), Positives = 85/137 (62%)

Query:   156 ITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPR 215
             ITF SLP GGNDLKRIRFSR+M+NKWQAQR W ENYD+++ELYNVQRFNRQA  L TP R
Sbjct:    14 ITFASLPTGGNDLKRIRFSREMYNKWQAQRRWGENYDKIVELYNVQRFNRQA--LQTPAR 71

Query:   216 SEDESSKIESVEESPVTPPLTRERLPRNLYRPTGMGMGYSSSDSLDHHPMQARNYYDSGG 275
             S+D+S + +S      +   +++  PR+ +RP G         S+ HH     + Y  G 
Sbjct:    72 SDDQSQR-DSTYSKMDSARESKDWTPRHNFRPPG---------SVPHHFYGGSSNYGPGS 121

Query:   276 LTSTPKLSSISGAKTET 292
                 P + +   A+T T
Sbjct:   122 YHGGPPMDA---ARTTT 135

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
 Identities = 39/67 (58%), Positives = 50/67 (74%)

Query:   311 GELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENR 370
             G    +N +  E EWVEQDEPGVYIT+ AL GG R+L+RVRFSR++F E+ A  WW +NR
Sbjct:   995 GNGEATNEARNEKEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADNR 1054

Query:   371 ARIHEQY 377
              R++EQY
Sbjct:  1055 GRVYEQY 1061

GO:0003682 "chromatin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 36/66 (54%), Positives = 49/66 (74%)

Query:   312 ELSISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRA 371
             +  ++N + +E EW+EQ EPGVYIT+ AL  G R+LRRVRFSR +FGE  A  WW ENR 
Sbjct:  1012 QTGVNNTNQVEAEWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENRE 1071

Query:   372 RIHEQY 377
             +++E+Y
Sbjct:  1072 KVYEKY 1077

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 39/64 (60%), Positives = 48/64 (75%)

Query:   314 SISNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARI 373
             S SNAS +E EW+EQ EPGVYIT+ AL  G R+L+RVRFSR +F E  A  WW ENR R+
Sbjct:   990 SASNASQVEAEWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWWSENRERV 1049

Query:   374 HEQY 377
             +E+Y
Sbjct:  1050 YEKY 1053

GO:0003682 "chromatin binding" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:2009739 AT1G65920 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query:   316 SNASDLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHE 375
             +   D   E VEQ EPGVYIT  ALP G++ L+RVRFSR++F E  A+ WWEE +  ++ 
Sbjct:   941 NETQDSSAEQVEQYEPGVYITFTALPCGQKTLKRVRFSRKRFSEKEAQRWWEEKQVLVYN 1000

Query:   376 QY 377
             +Y
Sbjct:  1001 KY 1002

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6YUB8	BRXL1_ORYSJ	No assigned EC number	0.5766	0.9629	0.9168	yes	no
Q8GZ92	BRXL4_ARATH	No assigned EC number	0.7060	0.9629	0.9479	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_VI000402 hypothetical protein (377 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
pfam08381	59	pfam08381, BRX, Transcription factor regulating ro	4e-31
pfam08381	59	pfam08381, BRX, Transcription factor regulating ro	4e-29
pfam13713	39	pfam13713, BRX_N, Transcription factor BRX N-termi	2e-11

>gnl|CDD|203924 pfam08381, BRX, Transcription factor regulating root and shoot growth via Pin3

 Score =  112 bits (282), Expect = 4e-31
 Identities = 36/58 (62%), Positives = 40/58 (68%)

Query: 142 EPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYN 199
              EWV QVEPGV IT V+LP G   LKR+RFSR  F + QAQRWW EN +RV E YN
Sbjct: 2   VKAEWVEQVEPGVYITLVTLPDGTKILKRVRFSRKRFGEKQAQRWWEENKERVYEKYN 59

The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 59

>gnl|CDD|203924 pfam08381, BRX, Transcription factor regulating root and shoot growth via Pin3

 Score =  106 bits (268), Expect = 4e-29
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 320 DLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQY 377
            ++ EWVEQ EPGVYIT+  LP G + L+RVRFSR++FGE  A+ WWEEN+ R++E+Y
Sbjct: 1   QVKAEWVEQVEPGVYITLVTLPDGTKILKRVRFSRKRFGEKQAQRWWEENKERVYEKY 58

The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 59

>gnl|CDD|205888 pfam13713, BRX_N, Transcription factor BRX N-terminal domain

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 34 QAIKSLTSQLKDMALKASGAYRHCSPCT 61
          + IKSLT+QLKDMA K SGAYR+C PC+
Sbjct: 12 EVIKSLTAQLKDMAEKLSGAYRNCKPCS 39

The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. This family features a short region, also alpha-helical, N-terminal to the repeated alpha-helices of family BRX, pfam08381. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
PF08381	59	BRX: Transcription factor regulating root and shoo	99.97
PF08381	59	BRX: Transcription factor regulating root and shoo	99.97
PF13713	39	BRX_N: Transcription factor BRX N-terminal domain	99.29

>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members

Probab=99.97  E-value=2.6e-32  Score=209.97  Aligned_cols=58  Identities=72%  Similarity=1.290  Sum_probs=56.9

Q ss_pred             CCCceEEeeCCceEEEEEeCCCCCccceEEEeehhccChHHHHHHHHHhhhHHHHHhc
Q 017074          142 EPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYN  199 (378)
Q Consensus       142 ~~~EwieQ~EPGVyITl~~~p~G~k~LKRVRFSR~~F~e~qAq~WW~eN~~rV~e~Yn  199 (378)
                      +++|||||+||||||||+++|||+|+||||||||++|+++||+.||+||++||+++||
T Consensus         2 ~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn   59 (59)
T PF08381_consen    2 EEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN   59 (59)
T ss_pred             CCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999997

It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.

>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members

Probab=99.97  E-value=7.2e-32  Score=207.49  Aligned_cols=58  Identities=64%  Similarity=1.179  Sum_probs=56.5

Q ss_pred             ccccceeeecCCceEEEEEeCCCCccceeEEeeehhccchHHHHHHHHHHHhhhhhhc
Q 017074          320 DLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQY  377 (378)
Q Consensus       320 ~~e~EwvEQ~EPGVYITl~~~p~G~k~LKRVRFSR~~F~e~qA~~WW~eN~~RI~e~Y  377 (378)
                      ++++|||||+||||||||+++|||+++||||||||++|+++||+.||+||++||+++|
T Consensus         1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Y   58 (59)
T PF08381_consen    1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKY   58 (59)
T ss_pred             CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999999999999999999999999999999

It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.

>PF13713 BRX_N: Transcription factor BRX N-terminal domain

Probab=99.29  E-value=1.4e-12  Score=93.83  Aligned_cols=36  Identities=56%  Similarity=0.917  Sum_probs=32.7

Q ss_pred             CCCCCchhHHHHHHHHHhhhhhhhhhcccccccCCCC
Q 017074           25 STGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPCT   61 (378)
Q Consensus        25 ~~~tp~t~~~aiKslt~QiKDmalK~SGa~r~ckp~~   61 (378)
                      ++.++.+| ++||+||+|||||++|++|+|++|+||+
T Consensus         4 aak~kaaK-e~IKsLt~QlK~maekl~~~~~~~k~~~   39 (39)
T PF13713_consen    4 AAKCKAAK-EVIKSLTAQLKDMAEKLPGAYRNCKPCS   39 (39)
T ss_pred             ccccHHHH-HHHHHHHHHHHHHHHhCchhhhccCCCC
Confidence            45567789 9999999999999999999999999995

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 11/35 (31%)

Query: 32 KQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAA 66
          ++QA+K L + LK         Y   +  +AP  A
Sbjct: 18 EKQALKKLQASLK--------LY---ADDSAPALA 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00