Citrus Sinensis ID: 017080
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | 2.2.26 [Sep-21-2011] | |||||||
| Q80Y20 | 664 | Alkylated DNA repair prot | yes | no | 0.713 | 0.405 | 0.415 | 5e-51 | |
| Q07G10 | 628 | Alkylated DNA repair prot | yes | no | 0.612 | 0.367 | 0.416 | 3e-49 | |
| A1A4L5 | 664 | Alkylated DNA repair prot | yes | no | 0.676 | 0.384 | 0.395 | 4e-47 | |
| Q96BT7 | 664 | Alkylated DNA repair prot | yes | no | 0.700 | 0.397 | 0.393 | 4e-46 | |
| Q95K79 | 664 | Alkylated DNA repair prot | N/A | no | 0.679 | 0.385 | 0.402 | 6e-45 | |
| P49957 | 279 | tRNA (carboxymethyluridin | yes | no | 0.384 | 0.519 | 0.476 | 7e-36 | |
| Q9P272 | 454 | Putative methyltransferas | no | no | 0.384 | 0.319 | 0.462 | 1e-34 | |
| Q80WQ4 | 447 | Putative methyltransferas | no | no | 0.384 | 0.324 | 0.468 | 2e-34 | |
| Q08DH3 | 453 | Putative methyltransferas | no | no | 0.379 | 0.315 | 0.468 | 5e-34 | |
| Q10224 | 228 | tRNA (carboxymethyluridin | yes | no | 0.374 | 0.618 | 0.471 | 2e-33 |
| >sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 173/296 (58%), Gaps = 27/296 (9%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY 136
+ S K ELE+K+VH+VY+ IA HFSSTR + WP++ FL +LPSGS+V D GCGNGKY
Sbjct: 361 TESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKY 420
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196
LG+N D + +GCD S +L+ IC +R + LV DA+ +P RS DA ISIAV+HH +T
Sbjct: 421 LGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAE 480
Query: 197 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256
RR +A++EL R+++ G LI VWA+EQE K+ +K+ L K + + G + +
Sbjct: 481 RRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKY--LRGKRISQ----GDKDELNSA 534
Query: 257 ARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ-- 312
T E + G E +P SV S S+T + E S V + ++ I N+
Sbjct: 535 TSTEEFLVNQTPEGVNE---DPALSV-----NSSSITKEEEYKSRKVPNSELPIHINRTC 586
Query: 313 ---QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
Q+ VPWHL + G +G+A D + V++RYYHVFCDGELE
Sbjct: 587 FHSQDVLVPWHLKRN----PGKDKAIEPSGVAGCPDP--SPVFHRYYHVFCDGELE 636
|
Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis. Mus musculus (taxid: 10090) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 9 |
| >sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 158/281 (56%), Gaps = 50/281 (17%)
Query: 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 145
LE++YVH+VYD IA HFSSTR WPK+ FL SLP GSLV D GCGNGKYLG+N D
Sbjct: 369 LEREYVHKVYDDIAGHFSSTRHTPWPKIGDFLASLPKGSLVADVGCGNGKYLGVNKDLCM 428
Query: 146 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
+GCD S +L+ IC +R E V DA+++P+R+ DA ISIAV+HH +TE RR A++EL
Sbjct: 429 IGCDRSKNLVDICRERTFEAFVCDALSVPFRAGAFDACISIAVIHHFATEERRIAALQEL 488
Query: 206 VRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265
+R+++KG LI VWA+EQE K + KY++E S + PS+ L
Sbjct: 489 IRLLRKGGKALIYVWALEQEYKKNKS-------KYLKE-----SKTSQGPSSDAL----- 531
Query: 266 TEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHL-PYH 324
G+ K P L + S SQD+ VPWHL P +
Sbjct: 532 ----GTNLAVKAP-------------LPIHTNRTSFHSQDL---------LVPWHLKPTN 565
Query: 325 RAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
+++V+ N + + VY+R+YHVFC+GELE
Sbjct: 566 KSKVTP------ENKEQNEKEHGPDSVYHRFYHVFCEGELE 600
|
Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K +LE+ YVHRVY+ IA HFSSTR WP + FL +LPSGSLV D GCGNGKYLG
Sbjct: 363 SDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R ++ V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
A++ELVR+++ G LI VWA+EQE + KY+ E R
Sbjct: 483 VAALQELVRLLRPGGKALIYVWAMEQE-------YNKKKSKYLRE-------------NR 522
Query: 259 TLESIPETEDNGSEEQGKEPKQSVPD----KLWESISLTSQSEDDSVISQDVK-----II 309
T + + E N + Q KQ +P+ S+S + +D S++V I
Sbjct: 523 TSQGMKEEISNDASVQELLVKQ-LPNVGNQDSAHSVSSINDFQDGGCNSKNVANSKLPIH 581
Query: 310 TNQ-----QEYFVPWHLPYH-----RAEVSGASACALANGLAKKDDKKGAVVYNRYYHVF 359
TN+ Q+ VPWH + R E G L +D V++RYYHVF
Sbjct: 582 TNRTSFHSQDLLVPWHFKGNPGKDKRVEPFGP--------LGSRDP---GPVFHRYYHVF 630
Query: 360 CDGELE 365
C+GELE
Sbjct: 631 CEGELE 636
|
Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 161/297 (54%), Gaps = 33/297 (11%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG
Sbjct: 363 SDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGS------ 249
A++E+VR+++ G LI VWA+EQE KS + +Q EE S
Sbjct: 483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLV 542
Query: 250 PRVRSPSAR-TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 308
++R +R + S+P D S+E G +Q KL ++ T S SQDV
Sbjct: 543 EQMRDMGSRDSASSVPRIND--SQEGGCNSRQVSNSKLPVHVNRT------SFYSQDV-- 592
Query: 309 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
VPWHL + + +D + V++RYYHVF +GELE
Sbjct: 593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDP---SPVFHRYYHVFREGELE 636
|
Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 158/291 (54%), Gaps = 35/291 (12%)
Query: 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 145
LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG+N + +
Sbjct: 370 LEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGVNKELYM 429
Query: 146 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
VGCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR A++E+
Sbjct: 430 VGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEI 489
Query: 206 VRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGSPRVRS-------- 254
VR+++ G LI VWA+EQE KS K +Q EE S + RS
Sbjct: 490 VRLLRPGGKALIYVWAMEQEYNKQKSKYLKGNRNSQGKKEEMNSDTSVQ-RSLVEQMPDM 548
Query: 255 PSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQE 314
S + S+P D S+E G +Q KL ++ T S SQD+
Sbjct: 549 GSRDSASSVPRIND--SQEGGCNSRQVSNSKLPIHVNRT------SFYSQDM-------- 592
Query: 315 YFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
VPWHL + + +D + V++RYYHVF +GELE
Sbjct: 593 -LVPWHL---KGNPDKGKPVEPFGPIGSQDP---SPVFHRYYHVFREGELE 636
|
Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|P49957|TRM9_YEAST tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 80 IKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL 139
I E E++YVH+VY+ IAPHFS TR+ WP V FL + P GS+ +D GCGNGKYLG+
Sbjct: 3 INQAAEKEQEYVHKVYNEIAPHFSQTRYKPWPIVTQFLKTRPMGSIGIDVGCGNGKYLGV 62
Query: 140 NPDCFFVGCDISPSLIKIC--VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
NPD + +G D S LI+ ++ + +LVAD +NLP++++ D AISIAV+HH ST R
Sbjct: 63 NPDIYIIGSDRSDGLIECARGINPSYNLLVADGLNLPHKNETFDFAISIAVVHHWSTRER 122
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQ 224
R + I ++ +++G LI WA+EQ
Sbjct: 123 RVEVIRHVLSKLRQGGQALIYCWALEQ 149
|
Required for the methylation of the wobble bases at position 34 in tRNA. Appears to have a role in stress-response. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|Q9P272|K1456_HUMAN Putative methyltransferase KIAA1456 OS=Homo sapiens GN=KIAA1456 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 96/145 (66%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
+LEK++VH VY++ AP+FS + WP+V FL GSL+ D GCG GKYL +N
Sbjct: 7 QLEKQHVHNVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
VGCD L++I +RG E +V D +NLP+R + DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSL 229
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNRHF 151
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q80WQ4|K1456_MOUSE Putative methyltransferase KIAA1456 OS=Mus musculus GN=Kiaa1456 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
ELEK++VH VY+ AP+F+ + WP+V FL GSLV D GCG GKYL +N
Sbjct: 7 ELEKRHVHSVYENTAPYFTDLQSKAWPRVRQFLQDQKPGSLVADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+GCD L++I +RG EV+V D +NLP+R DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKERRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSL 229
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLAPGGQLMIYVWAMEQKNRRF 151
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q08DH3|K1456_BOVIN Putative methyltransferase KIAA1456 homolog OS=Bos taurus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
+LEK++VH VY++ AP+FS + WP+V FL GSL+ D GCG GKYL +N
Sbjct: 7 QLEKQHVHDVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+GCD L++I RG EV+V D +NLP+R DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TLGCDYCAPLVEIARSRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKQRRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDK 227
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNR 149
|
Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q10224|TRM9_SCHPO tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
E E +YVH+VYD IA HFS TR+ WP V FL SLP GS+ +D GCGNGKY +NP+ +
Sbjct: 4 EYENEYVHQVYDKIATHFSDTRYKPWPVVEKFLKSLPLGSVGVDIGCGNGKYQKVNPNVY 63
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+G D L+KI + G ++++D +++P+ S+ D A+SIAV+HH S E+RR +A++E
Sbjct: 64 MIGSDRCVKLVKIASNLG-PMVISDGLHVPHPSNRFDFALSIAVIHHFSNENRRLQAVQE 122
Query: 205 LVRVVKKGSLVLITVWAVEQED 226
++R + KG L VWA+EQ++
Sbjct: 123 VLRPLVKGGKALFFVWALEQKN 144
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| 255545596 | 390 | S-adenosylmethionine-dependent methyltra | 0.954 | 0.923 | 0.732 | 1e-145 | |
| 302141903 | 391 | unnamed protein product [Vitis vinifera] | 0.957 | 0.923 | 0.723 | 1e-141 | |
| 224066905 | 369 | predicted protein [Populus trichocarpa] | 0.862 | 0.880 | 0.711 | 1e-136 | |
| 225459401 | 347 | PREDICTED: alkylated DNA repair protein | 0.840 | 0.913 | 0.770 | 1e-132 | |
| 449441742 | 391 | PREDICTED: alkylated DNA repair protein | 0.872 | 0.841 | 0.688 | 1e-128 | |
| 363807694 | 375 | uncharacterized protein LOC100807751 [Gl | 0.909 | 0.914 | 0.646 | 1e-124 | |
| 356508138 | 374 | PREDICTED: alkylated DNA repair protein | 0.901 | 0.909 | 0.642 | 1e-122 | |
| 297846670 | 378 | hypothetical protein ARALYDRAFT_473716 [ | 0.867 | 0.865 | 0.655 | 1e-115 | |
| 115448705 | 367 | Os02g0750500 [Oryza sativa Japonica Grou | 0.777 | 0.798 | 0.688 | 1e-114 | |
| 222623679 | 327 | hypothetical protein OsJ_08398 [Oryza sa | 0.777 | 0.896 | 0.688 | 1e-114 |
| >gi|255545596|ref|XP_002513858.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546944|gb|EEF48441.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/362 (73%), Positives = 301/362 (83%), Gaps = 2/362 (0%)
Query: 6 VFDVLRATRCFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADGESSIH 65
+FDVLRA+R + + F+ PI V GI MRE+KVKG S + +DGES I
Sbjct: 2 IFDVLRASRFSETYRQAFARPIIVIGRVCLFGIFRAMREIKVKGPSGLSNVASDGESQIQ 61
Query: 66 -SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGS 124
S+S E Q CSSSS++STPE+EKKYVH VYDAIAPHFSSTRFAKWPKVATFLNSLPSGS
Sbjct: 62 LSLSADEKQVCSSSSVQSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLNSLPSGS 121
Query: 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAI 184
L+LDAGCGNGKYLGLNPDC+F+GCDIS LIKIC DRGHEVLV DAVNLPYR+ F DAAI
Sbjct: 122 LILDAGCGNGKYLGLNPDCYFIGCDISAPLIKICADRGHEVLVGDAVNLPYRTGFSDAAI 181
Query: 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
SIAVLHHLSTE+RRKKAIEELVRVVKKG LVLITVWAVEQED SLV KWTPL+QKYVEEW
Sbjct: 182 SIAVLHHLSTENRRKKAIEELVRVVKKGGLVLITVWAVEQEDGSLVAKWTPLSQKYVEEW 241
Query: 245 IGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
IGPGSPRVRSPS+ TLESIPETE+N S+E ++ +++ ++ +++ SQ+E +SV +
Sbjct: 242 IGPGSPRVRSPSSFTLESIPETEENNSKELIQDSEKNADEEFMKTMDSISQTEHNSVF-K 300
Query: 305 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
D K NQQEYFVPWHLPYHRAEVSGASACALA+GLAKKDDKKGAVVYNRYYHVF +GEL
Sbjct: 301 DEKNAKNQQEYFVPWHLPYHRAEVSGASACALASGLAKKDDKKGAVVYNRYYHVFSEGEL 360
Query: 365 ER 366
ER
Sbjct: 361 ER 362
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141903|emb|CBI19106.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/362 (72%), Positives = 298/362 (82%), Gaps = 1/362 (0%)
Query: 6 VFDVLRATRCFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADGESSIH 65
VF+ R +CF + + F++PIT + +PGI T RE KV AS CTL +DGES
Sbjct: 2 VFNAARLKKCFCQSFGAFTLPITFTDTTCYPGIFKTRREGKVDMASSLCTLVSDGESHTQ 61
Query: 66 -SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGS 124
S+ +DQ C S+++STPE+EKKYVH VYDAIAPHFSSTRFAKWPKVATFL SLPSGS
Sbjct: 62 PSLIVSQDQICPVSNVQSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLKSLPSGS 121
Query: 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAI 184
LVLDAGCGNGKYLGL+PDCFF+GCDIS LI IC DR HEV+VADAVNLPYR+ FGDAAI
Sbjct: 122 LVLDAGCGNGKYLGLSPDCFFIGCDISAPLINICADRDHEVVVADAVNLPYRTGFGDAAI 181
Query: 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
SIAVLHHLSTESRRKKAI+ELVRVVKKG LVLITVWAVEQED+SLVTKWTPL+ KYVEEW
Sbjct: 182 SIAVLHHLSTESRRKKAIQELVRVVKKGGLVLITVWAVEQEDRSLVTKWTPLSPKYVEEW 241
Query: 245 IGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
IGP SPR+RSPS+ TLESIPETE+NGS E K+ K+ + L +++ T Q+EDDS+ +
Sbjct: 242 IGPSSPRIRSPSSFTLESIPETEENGSGEHLKDLKEISNENLQDTMHSTCQTEDDSMTFK 301
Query: 305 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
K I + QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVF +GEL
Sbjct: 302 IKKNIESHQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFSEGEL 361
Query: 365 ER 366
ER
Sbjct: 362 ER 363
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066905|ref|XP_002302272.1| predicted protein [Populus trichocarpa] gi|222843998|gb|EEE81545.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/343 (71%), Positives = 274/343 (79%), Gaps = 18/343 (5%)
Query: 42 MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPH 101
MR +KVKG S TL +DGES + + E++ SSSS++STPE+EK YVHRVYDAIAPH
Sbjct: 1 MRGIKVKGLSCLRTLVSDGESHVQPMPLVEEETGSSSSVQSTPEIEKNYVHRVYDAIAPH 60
Query: 102 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 161
FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG NPDC FVGCDIS LIKIC DR
Sbjct: 61 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGFNPDCTFVGCDISGPLIKICADR 120
Query: 162 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
GHEVLVADAVNLPYR+ FGDAAISIAVLHHLSTE+RRK+AI+ELVR VKKG L+LITVWA
Sbjct: 121 GHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRKRAIDELVRAVKKGGLILITVWA 180
Query: 222 VEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ------G 275
VEQED+SLVTKWTPL QKYV+EWIGPGSPR+RSPS+ TLESIPETE+N E +
Sbjct: 181 VEQEDRSLVTKWTPLNQKYVDEWIGPGSPRIRSPSSITLESIPETENNSKEHEKDTESLN 240
Query: 276 KEPKQSVPDKLWESISLTSQSEDDS------------VISQDVKIITNQQEYFVPWHLPY 323
P + + E+ + + + E D+ S+D + NQQEYFVPWHLPY
Sbjct: 241 HNPSPITLESIPETENNSKEHEKDTESLNHEFKGTMPSTSKDDSSVQNQQEYFVPWHLPY 300
Query: 324 HRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELER 366
HRAEVSGASACAL NGLAKKDDKKGAVVYNRYYHVF +GELER
Sbjct: 301 HRAEVSGASACALENGLAKKDDKKGAVVYNRYYHVFSEGELER 343
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459401|ref|XP_002284289.1| PREDICTED: alkylated DNA repair protein alkB homolog 8 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/318 (77%), Positives = 273/318 (85%), Gaps = 1/318 (0%)
Query: 50 ASDFCTLGADGESSIH-SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFA 108
AS CTL +DGES S+ +DQ C S+++STPE+EKKYVH VYDAIAPHFSSTRFA
Sbjct: 2 ASSLCTLVSDGESHTQPSLIVSQDQICPVSNVQSTPEIEKKYVHHVYDAIAPHFSSTRFA 61
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA 168
KWPKVATFL SLPSGSLVLDAGCGNGKYLGL+PDCFF+GCDIS LI IC DR HEV+VA
Sbjct: 62 KWPKVATFLKSLPSGSLVLDAGCGNGKYLGLSPDCFFIGCDISAPLINICADRDHEVVVA 121
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228
DAVNLPYR+ FGDAAISIAVLHHLSTESRRKKAI+ELVRVVKKG LVLITVWAVEQED+S
Sbjct: 122 DAVNLPYRTGFGDAAISIAVLHHLSTESRRKKAIQELVRVVKKGGLVLITVWAVEQEDRS 181
Query: 229 LVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWE 288
LVTKWTPL+ KYVEEWIGP SPR+RSPS+ TLESIPETE+NGS E K+ K+ + L +
Sbjct: 182 LVTKWTPLSPKYVEEWIGPSSPRIRSPSSFTLESIPETEENGSGEHLKDLKEISNENLQD 241
Query: 289 SISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG 348
++ T Q+EDDS+ + K I + QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG
Sbjct: 242 TMHSTCQTEDDSMTFKIKKNIESHQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG 301
Query: 349 AVVYNRYYHVFCDGELER 366
AVVYNRYYHVF +GELER
Sbjct: 302 AVVYNRYYHVFSEGELER 319
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441742|ref|XP_004138641.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Cucumis sativus] gi|449490102|ref|XP_004158508.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/331 (68%), Positives = 269/331 (81%), Gaps = 2/331 (0%)
Query: 35 HPGISGTMREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRV 94
H ++ M+E+K+KG S+ + E+ H+ + Q C++S+++ TPE+EKKYVHRV
Sbjct: 34 HFRLNSAMKEIKIKGGSNADPHPLNDET--HAQLSCAIQGCTASNVQCTPEIEKKYVHRV 91
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSL 154
YDAIAPHFSSTRFAKWPKVA+FL+SLP GSLVLDAGCGNGKYLG N +CFF+GCDIS L
Sbjct: 92 YDAIAPHFSSTRFAKWPKVASFLSSLPLGSLVLDAGCGNGKYLGYNSNCFFIGCDISAQL 151
Query: 155 IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL 214
IKIC +RGHEVLVADAVNLPYR+ FGDAAISIAVLHHLSTE+RRKKAIEEL+RVVKKG L
Sbjct: 152 IKICNERGHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRKKAIEELIRVVKKGGL 211
Query: 215 VLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274
VLITVWAVEQEDKSL+TKW PL++KYVEEW+GPGSPRVRSPS+ LESIPE +N S
Sbjct: 212 VLITVWAVEQEDKSLLTKWMPLSEKYVEEWVGPGSPRVRSPSSMALESIPEMNENNSGIC 271
Query: 275 GKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASAC 334
K+ K+++ + E+ SQSE+D ++ QQEYFVPWHLPYHRAEVSG SA
Sbjct: 272 LKDSKENLTGSIPENKPPPSQSENDLANCNHENLLKTQQEYFVPWHLPYHRAEVSGTSAS 331
Query: 335 ALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
ALA+GLAKKDDKK AVVYNRYYHVF +GELE
Sbjct: 332 ALASGLAKKDDKKAAVVYNRYYHVFSEGELE 362
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807694|ref|NP_001242166.1| uncharacterized protein LOC100807751 [Glycine max] gi|255639634|gb|ACU20111.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/362 (64%), Positives = 270/362 (74%), Gaps = 19/362 (5%)
Query: 6 VFDVLRATRCFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADGESSI- 64
+ VL+A+R + E + I CV S +M+E+ K S CTL + E I
Sbjct: 2 IHSVLKASRFQNPRREALVLTIAISGCVCRLAFS-SMKEINCKVDSSSCTLAPNREPCIT 60
Query: 65 HSVS-TGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSG 123
S+S +G SS S+KSTPE+EKK+VH VYDAIAPHFS+TRFAKWPKVA FL+SLP G
Sbjct: 61 ESLSVSGNGTTTSSMSVKSTPEIEKKFVHHVYDAIAPHFSATRFAKWPKVAAFLSSLPLG 120
Query: 124 SLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA 183
SLVLDAGCGNGKYLGLN DCFF+GCDISPSLIKIC DR HEVLVADAVNLPYR+ FGDAA
Sbjct: 121 SLVLDAGCGNGKYLGLNQDCFFMGCDISPSLIKICSDREHEVLVADAVNLPYRTGFGDAA 180
Query: 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE 243
ISIAVLHHLSTE+RR+KAIEELVRVVKKG VLITVWAVEQED L+TKWTPL +KYV+E
Sbjct: 181 ISIAVLHHLSTENRRRKAIEELVRVVKKGGRVLITVWAVEQEDSKLITKWTPLNEKYVDE 240
Query: 244 WIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVIS 303
W+GPGSP R+PS+ +LESIPE+E + S E + ++ + E
Sbjct: 241 WVGPGSPHTRAPSSSSLESIPESEVSTSGEHMEVCHEAHASRYLE--------------- 285
Query: 304 QDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGE 363
+ K I NQQEYFVPWHLPYHRAE+SGASA ALA GLA KDDKKGAVVYNRYYHVF +GE
Sbjct: 286 -EEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAGLATKDDKKGAVVYNRYYHVFSEGE 344
Query: 364 LE 365
LE
Sbjct: 345 LE 346
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508138|ref|XP_003522817.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 234/364 (64%), Positives = 275/364 (75%), Gaps = 24/364 (6%)
Query: 6 VFDVLRATRCFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADGESSI- 64
+ VL+A+R + + + I+ CV+ S +M+E+ K S CTL + E I
Sbjct: 2 IHSVLKASRFLNPRRQTLGLTISVSGCVYRLAFS-SMKEINCKVDSSSCTLAPNREPCIT 60
Query: 65 HSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGS 124
S+S + SS+S+KSTPE+EKKYVH VYDAIAPHFS+TRFAKWPKVA FL+SLP GS
Sbjct: 61 DSLSVSGNCTTSSTSVKSTPEIEKKYVHHVYDAIAPHFSATRFAKWPKVAAFLSSLPLGS 120
Query: 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAI 184
LV DAGCGNGKYLGLN DCFF+GCDISPSLIKIC+DR HEVLVADAVNLPYR+ FGD AI
Sbjct: 121 LVFDAGCGNGKYLGLNQDCFFIGCDISPSLIKICLDREHEVLVADAVNLPYRTGFGDVAI 180
Query: 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
SIAVLHHLSTE+RR+KAIEELVRVVKKG LVLITVWAVEQED L+TKWTPL +KYV+EW
Sbjct: 181 SIAVLHHLSTENRRRKAIEELVRVVKKGGLVLITVWAVEQEDSKLITKWTPLNEKYVDEW 240
Query: 245 IGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
+GPGSPR R+PS+ +LESIPE+E + S E + ++ +S+
Sbjct: 241 VGPGSPRTRAPSSSSLESIPESEVSRSGEH-------------------MEVCNEPHVSR 281
Query: 305 DV---KIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCD 361
D+ K I NQQEYFVPWHLPYHRAE+SGASA ALA GLA KDDKKGAVVYNRYYHVF +
Sbjct: 282 DLEEEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAGLATKDDKKGAVVYNRYYHVFSE 341
Query: 362 GELE 365
GELE
Sbjct: 342 GELE 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846670|ref|XP_002891216.1| hypothetical protein ARALYDRAFT_473716 [Arabidopsis lyrata subsp. lyrata] gi|297337058|gb|EFH67475.1| hypothetical protein ARALYDRAFT_473716 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/348 (65%), Positives = 263/348 (75%), Gaps = 21/348 (6%)
Query: 42 MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPH 101
MR++KVK S +D E + R SS S+KSTPE+EKKYVHRVYDAIAPH
Sbjct: 1 MRDIKVKSDSKEFLTSSDEEEETVQIIESVSIRESSLSVKSTPEIEKKYVHRVYDAIAPH 60
Query: 102 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 161
FSSTRFAKWPKVA FL SLP GS++LDAGCGNGKYLGLNP CFF+GCDIS LIKIC D+
Sbjct: 61 FSSTRFAKWPKVAAFLESLPPGSVILDAGCGNGKYLGLNPSCFFIGCDISHPLIKICSDK 120
Query: 162 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
G EV+VADAVNLPYR +FGDAAISIAVLHHLSTE+RRKKAIEELVRVVK G VLITVWA
Sbjct: 121 GQEVVVADAVNLPYREEFGDAAISIAVLHHLSTENRRKKAIEELVRVVKPGGYVLITVWA 180
Query: 222 VEQEDKSLVTKWTPLTQKYVEEWIGPG----SPRVRSPSARTLESIPETEDNGSEEQGK- 276
EQED SL+TKWTPL+ KYVEEW+GPG SPRVR+ +LESIPETE + E++ +
Sbjct: 181 AEQEDTSLLTKWTPLSAKYVEEWVGPGSPMNSPRVRNNPFFSLESIPETEVSTKEQKAEN 240
Query: 277 ----------EPKQSVPDKLWESI------SLTSQSEDDSVISQDVKIITNQQEYFVPWH 320
E ++S ++ ESI S+ Q +++SV + +QQEYFVPWH
Sbjct: 241 SPFIGLESIPESEESTREQRGESIIPETKASVVEQKDENSVDESLEALKKSQQEYFVPWH 300
Query: 321 LPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERYA 368
LPYHRAEVSGASA ALA+GLAKKDD+KGAVVYNRYYHVF +GELER A
Sbjct: 301 LPYHRAEVSGASASALASGLAKKDDRKGAVVYNRYYHVFSEGELERLA 348
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115448705|ref|NP_001048132.1| Os02g0750500 [Oryza sativa Japonica Group] gi|46390207|dbj|BAD15638.1| methyltransferase-like [Oryza sativa Japonica Group] gi|113537663|dbj|BAF10046.1| Os02g0750500 [Oryza sativa Japonica Group] gi|215678876|dbj|BAG95313.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/302 (68%), Positives = 241/302 (79%), Gaps = 9/302 (2%)
Query: 66 SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSL 125
+VST + CSS ++STP++EKKYVHRVYDAIAPHFSSTRFAKWPKVA FLNSL GS+
Sbjct: 47 TVSTEGNNSCSS--VQSTPDIEKKYVHRVYDAIAPHFSSTRFAKWPKVAGFLNSLRPGSV 104
Query: 126 VLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 185
+LDAGCGNGKYLG NPDC F+GCDISP LI IC RGHEVLVADAVNLPYR +FGDAAIS
Sbjct: 105 ILDAGCGNGKYLGFNPDCLFIGCDISPPLIDICAGRGHEVLVADAVNLPYRDNFGDAAIS 164
Query: 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245
IAVLHHLST++RR+KAIEEL+RVV+KG LVLITVWAVEQEDKSL+ KWTPL +KY EEW+
Sbjct: 165 IAVLHHLSTDARRRKAIEELIRVVRKGGLVLITVWAVEQEDKSLLNKWTPLCEKYNEEWV 224
Query: 246 GPGSPRVRSPSARTLESIPET-EDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
P SP VR+ S LESI ET ED G+ +Q + + D L ++ +T +S I +
Sbjct: 225 DPSSPPVRNQSNTVLESISETDEDTGAVKQRNDDLKISNDGLDDNADVTCS---NSNIDE 281
Query: 305 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
K QQEYFVPWHLP+HRAE+ GASA AL NG AK+DDKKG VVYNRYYHVF +GEL
Sbjct: 282 YHK---TQQEYFVPWHLPFHRAEIGGASAAALENGFAKRDDKKGTVVYNRYYHVFVEGEL 338
Query: 365 ER 366
+R
Sbjct: 339 QR 340
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222623679|gb|EEE57811.1| hypothetical protein OsJ_08398 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/302 (68%), Positives = 241/302 (79%), Gaps = 9/302 (2%)
Query: 66 SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSL 125
+VST + CSS ++STP++EKKYVHRVYDAIAPHFSSTRFAKWPKVA FLNSL GS+
Sbjct: 7 TVSTEGNNSCSS--VQSTPDIEKKYVHRVYDAIAPHFSSTRFAKWPKVAGFLNSLRPGSV 64
Query: 126 VLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 185
+LDAGCGNGKYLG NPDC F+GCDISP LI IC RGHEVLVADAVNLPYR +FGDAAIS
Sbjct: 65 ILDAGCGNGKYLGFNPDCLFIGCDISPPLIDICAGRGHEVLVADAVNLPYRDNFGDAAIS 124
Query: 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245
IAVLHHLST++RR+KAIEEL+RVV+KG LVLITVWAVEQEDKSL+ KWTPL +KY EEW+
Sbjct: 125 IAVLHHLSTDARRRKAIEELIRVVRKGGLVLITVWAVEQEDKSLLNKWTPLCEKYNEEWV 184
Query: 246 GPGSPRVRSPSARTLESIPET-EDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
P SP VR+ S LESI ET ED G+ +Q + + D L ++ +T +S I +
Sbjct: 185 DPSSPPVRNQSNTVLESISETDEDTGAVKQRNDDLKISNDGLDDNADVTCS---NSNIDE 241
Query: 305 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
K QQEYFVPWHLP+HRAE+ GASA AL NG AK+DDKKG VVYNRYYHVF +GEL
Sbjct: 242 YHK---TQQEYFVPWHLPFHRAEIGGASAAALENGFAKRDDKKGTVVYNRYYHVFVEGEL 298
Query: 365 ER 366
+R
Sbjct: 299 QR 300
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| TAIR|locus:2035947 | 404 | AT1G36310 [Arabidopsis thalian | 0.734 | 0.685 | 0.644 | 3.6e-89 | |
| MGI|MGI:1914917 | 664 | Alkbh8 "alkB, alkylation repai | 0.713 | 0.405 | 0.415 | 5.8e-50 | |
| RGD|1304687 | 629 | Alkbh8 "alkB, alkylation repai | 0.708 | 0.424 | 0.408 | 1.1e-48 | |
| UNIPROTKB|F1P0F6 | 673 | ALKBH8 "Uncharacterized protei | 0.716 | 0.401 | 0.404 | 2.9e-48 | |
| UNIPROTKB|I3LA93 | 665 | ALKBH8 "Uncharacterized protei | 0.745 | 0.422 | 0.39 | 6.9e-47 | |
| UNIPROTKB|A1A4L5 | 664 | ALKBH8 "Alkylated DNA repair p | 0.750 | 0.426 | 0.375 | 1.3e-45 | |
| UNIPROTKB|E2REE7 | 674 | ALKBH8 "Uncharacterized protei | 0.702 | 0.393 | 0.399 | 2.9e-44 | |
| UNIPROTKB|Q96BT7 | 664 | ALKBH8 "Alkylated DNA repair p | 0.700 | 0.397 | 0.393 | 3.1e-44 | |
| UNIPROTKB|Q95K79 | 664 | ALKBH8 "Alkylated DNA repair p | 0.716 | 0.406 | 0.388 | 2.8e-43 | |
| ZFIN|ZDB-GENE-100922-251 | 666 | alkbh8 "alkB, alkylation repai | 0.620 | 0.351 | 0.402 | 5e-43 |
| TAIR|locus:2035947 AT1G36310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 185/287 (64%), Positives = 217/287 (75%)
Query: 34 FHPGISGTMREVKVKGAS-DFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVH 92
F+ + MR++KVK S +F T +D E SVS S SS+KSTPE+EKKYVH
Sbjct: 21 FYSISTSIMRDIKVKSDSKEFLT-SSDEEEE--SVSIRVSSSSSLSSVKSTPEIEKKYVH 77
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISP 152
RVYDAIAPHFSSTRFAKWPKVA FL SLPSGS++LDAGCGNGKYLGLNP CFF+GCDIS
Sbjct: 78 RVYDAIAPHFSSTRFAKWPKVAAFLESLPSGSVILDAGCGNGKYLGLNPSCFFIGCDISH 137
Query: 153 SLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
LIKIC D+G EVLVADAVNLPYR +FGDAAISIAVLHHLSTE+RRKKAIEELVRVVK G
Sbjct: 138 PLIKICSDKGQEVLVADAVNLPYREEFGDAAISIAVLHHLSTENRRKKAIEELVRVVKPG 197
Query: 213 SLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSP----RVRSPSARTLESIPETED 268
VLITVWA EQED SL+TKWTPL+ KYVEEW+GPGSP RVR+ +LESIPETE
Sbjct: 198 GFVLITVWAAEQEDTSLLTKWTPLSAKYVEEWVGPGSPMNSPRVRNNPFFSLESIPETEV 257
Query: 269 NGSEEQGKEPKQSVP-DKLWESISLTSQSEDDSVISQDVKIITNQQE 314
+ ++EQ E Q + + + ES T + + +S+I + I Q++
Sbjct: 258 S-TKEQKVENSQFIGLESIPESEESTREQKGESIIPETKASIVEQKD 303
|
|
| MGI|MGI:1914917 Alkbh8 "alkB, alkylation repair homolog 8 (E. coli)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 123/296 (41%), Positives = 173/296 (58%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY 136
+ S K ELE+K+VH+VY+ IA HFSSTR + WP++ FL +LPSGS+V D GCGNGKY
Sbjct: 361 TESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKY 420
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196
LG+N D + +GCD S +L+ IC +R + LV DA+ +P RS DA ISIAV+HH +T
Sbjct: 421 LGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAE 480
Query: 197 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256
RR +A++EL R+++ G LI VWA+EQE K+ +K+ L K + + G + +
Sbjct: 481 RRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKY--LRGKRISQ----GDKDELNSA 534
Query: 257 ARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ-- 312
T E + G E +P SV S S+T + E S V + ++ I N+
Sbjct: 535 TSTEEFLVNQTPEGVNE---DPALSV-----NSSSITKEEEYKSRKVPNSELPIHINRTC 586
Query: 313 ---QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
Q+ VPWHL + G +G+A D + V++RYYHVFCDGELE
Sbjct: 587 FHSQDVLVPWHLKRN----PGKDKAIEPSGVAGCPDP--SPVFHRYYHVFCDGELE 636
|
|
| RGD|1304687 Alkbh8 "alkB, alkylation repair homolog 8 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 120/294 (40%), Positives = 173/294 (58%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K ELE+K+VH VYD IA HFSSTR + WP++ FL +LPSGS+V D GCGNGKYLG
Sbjct: 328 SSKEALELEQKHVHHVYDEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKYLG 387
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R + LV DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 388 INKELYMIGCDRSRNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAERR 447
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
+A++E+ R+++ G LI VWA+EQE + +K+ + I G + SA
Sbjct: 448 VEALQEIARLLRSGGQALIYVWAMEQEYRDQKSKYLKGNR------ISQGD-KGELNSAT 500
Query: 259 TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ---- 312
++E + + E ++P SV S + T E S V++ ++ I TN+
Sbjct: 501 SMEQL--LVNQMPEGVSEDPGLSV-----HSSNNTKDEECKSRKVLNSELPIHTNRTCFH 553
Query: 313 -QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
Q+ VPWHL + + G +GLA+ D + V++RYYHVFC+GELE
Sbjct: 554 SQDVLVPWHL---KGK-PGKDKAVEQSGLARCPDPRP--VFHRYYHVFCNGELE 601
|
|
| UNIPROTKB|F1P0F6 ALKBH8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 114/282 (40%), Positives = 159/282 (56%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
ELE++YVH+VY+ IA HFSSTR + WP+V FL SLP GS+V D GCGNGKYLG+N D +
Sbjct: 375 ELEQQYVHKVYEEIATHFSSTRHSPWPRVVEFLRSLPEGSIVADVGCGNGKYLGINRDLY 434
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
VGCD S +L+ IC ++ + V DA+++P RS DA ISIAV+HH ST RR AI E
Sbjct: 435 MVGCDRSKNLVDICGEKDCQAFVCDALSVPIRSGSCDACISIAVIHHFSTAERRLAAIRE 494
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIP 264
L R++K G LI VWA+EQE K+ +K Y++E G S S T + +
Sbjct: 495 LARLLKPGGTALIYVWAMEQEYKNQKSK-------YLKEKHGSKDKEEES-STGTSQRLL 546
Query: 265 ETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYH 324
+ + + QG + D + D + + + Q+ VPWHL
Sbjct: 547 DDQKHDRSSQGSACSDRLLDDSEDKGCAAKPVADSRLPVHTNRTSFHSQDMLVPWHL--- 603
Query: 325 RAEVSGASACALANGLAK-KDDKKGAVVYNRYYHVFCDGELE 365
+ + A LA K+ ++ + V++RYYHVF +GELE
Sbjct: 604 KGGIKKKGAVVDEASLAGCKESQELSPVFHRYYHVFREGELE 645
|
|
| UNIPROTKB|I3LA93 ALKBH8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 117/300 (39%), Positives = 167/300 (55%)
Query: 81 KSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN 140
K +LE++YVHRVY+ IA HFSSTR WP + FL LPSGSLV D GCGNGKYLG+N
Sbjct: 365 KEASQLEQEYVHRVYEEIAGHFSSTRHTPWPHIVAFLKDLPSGSLVADIGCGNGKYLGIN 424
Query: 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
+ +GCD S +L+ IC +R ++ +V DA+++P RS DA +SIAV+HH +T RR
Sbjct: 425 KELHMIGCDHSQNLVDICRERQYQAIVCDALSVPIRSGSCDACLSIAVIHHFATAERRVA 484
Query: 201 AIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260
A++ELVR+++ G LI VWA+EQE K +K+ E I G + + S+ T
Sbjct: 485 ALQELVRLLRPGGKALIYVWAMEQEYKKKKSKYLR------ENRISQG--KKKEISSHT- 535
Query: 261 ESIPETEDNGSEEQGKEPKQ-SVPDKL-WESISLTSQSEDDSVISQDVKIIT-NQQEYFV 317
+ E E G + SVP ++ S+ +S + + + Q+ V
Sbjct: 536 -PVEELLVKHMPEVGNQDAACSVPSNNDFQEGGCNSRKVTNSKLPIHTNRTSFHSQDLLV 594
Query: 318 PWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERYALLSFANLDV 377
PWHL + + L L D G V++ RYYHVFC+GELE A + +N+ +
Sbjct: 595 PWHLKGNPGKDKAVEP--LCGPLGSHDS--GPVLH-RYYHVFCEGELEA-ACQTLSNVSI 648
|
|
| UNIPROTKB|A1A4L5 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 113/301 (37%), Positives = 161/301 (53%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K +LE+ YVHRVY+ IA HFSSTR WP + FL +LPSGSLV D GCGNGKYLG
Sbjct: 363 SDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R ++ V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE-WIGPGSPRVRSPSA 257
A++ELVR+++ G LI VWA+EQE + KY+ E G S A
Sbjct: 483 VAALQELVRLLRPGGKALIYVWAMEQE-------YNKKKSKYLRENRTSQGMKEEISNDA 535
Query: 258 RTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIIT-NQQEYF 316
E + + N + S+ D ++ S++ +S + + + Q+
Sbjct: 536 SVQELLVKQLPNVGNQDSAHSVSSIND--FQDGGCNSKNVANSKLPIHTNRTSFHSQDLL 593
Query: 317 VPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERYALLSFANLD 376
VPWH + + L +D V++RYYHVFC+GELE A + N+
Sbjct: 594 VPWHFKGNPGKDKRVEPFG---PLGSRDP---GPVFHRYYHVFCEGELEA-ACRTLNNIS 646
Query: 377 V 377
+
Sbjct: 647 I 647
|
|
| UNIPROTKB|E2REE7 ALKBH8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.9e-44, P = 2.9e-44
Identities = 117/293 (39%), Positives = 154/293 (52%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S + +LE+ YVHRVY+ IA HFSSTR WP+V FL SLP GSLV D GCGNGKYLG
Sbjct: 376 SAREASQLEQDYVHRVYEEIAEHFSSTRHTPWPRVVEFLKSLPCGSLVADVGCGNGKYLG 435
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S L+ IC +R + LV DA+ +P S DA ISIAV+HH ST RR
Sbjct: 436 VNKELYMIGCDRSQKLVDICRERCFQALVCDALAVPLCSGSCDACISIAVIHHFSTAERR 495
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE-WIGPGSPRVRSPSA 257
A++ELVR+++ G L+ VWA+EQE + KY+ E I G S
Sbjct: 496 VAALQELVRLLRPGGQALVYVWAMEQE-------YNKKKSKYLRENRISQGKEEGTSSDT 548
Query: 258 RTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQ----- 312
E + E N + SV D L E + +V + + + TN+
Sbjct: 549 AMPELLVEQVPNVGSRDSECCVSSVTD-LPEG-----GHKARTVTNAKLPVHTNRTSFPS 602
Query: 313 QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
Q+ VPWH H+ G G V ++RYYHVFC+GELE
Sbjct: 603 QDLLVPWH---HQGNPGEGKP-----GHPAGAHDPGPV-FHRYYHVFCEGELE 646
|
|
| UNIPROTKB|Q96BT7 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 117/297 (39%), Positives = 160/297 (53%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG
Sbjct: 363 SDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGS------ 249
A++E+VR+++ G LI VWA+EQE KS + +Q EE S
Sbjct: 483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLV 542
Query: 250 PRVRSPSAR-TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 308
++R +R + S+P D S+E G +Q KL ++ TS SQDV
Sbjct: 543 EQMRDMGSRDSASSVPRIND--SQEGGCNSRQVSNSKLPVHVNRTS------FYSQDV-- 592
Query: 309 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
VPWHL + + +D V++RYYHVF +GELE
Sbjct: 593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDPSP---VFHRYYHVFREGELE 636
|
|
| UNIPROTKB|Q95K79 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 113/291 (38%), Positives = 158/291 (54%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S + LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG
Sbjct: 363 SDEEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + VGCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 VNKELYMVGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGSPRVRSP 255
A++E+VR+++ G LI VWA+EQE KS K +Q EE S + RS
Sbjct: 483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLKGNRNSQGKKEEMNSDTSVQ-RS- 540
Query: 256 SARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIIT-NQQE 314
+E +P D GS + + + D + S+ +S + V + Q+
Sbjct: 541 ---LVEQMP---DMGSRDSASSVPR-INDS--QEGGCNSRQVSNSKLPIHVNRTSFYSQD 591
Query: 315 YFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
VPWHL + + +D V++RYYHVF +GELE
Sbjct: 592 MLVPWHL---KGNPDKGKPVEPFGPIGSQDPSP---VFHRYYHVFREGELE 636
|
|
| ZFIN|ZDB-GENE-100922-251 alkbh8 "alkB, alkylation repair homolog 8 (E. coli)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 5.0e-43, P = 5.0e-43
Identities = 101/251 (40%), Positives = 149/251 (59%)
Query: 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 145
LE +YVH+VY+ I+ HFSSTR + WPKV FL SLP GS + D GCGNGKYLG+NP
Sbjct: 367 LESQYVHQVYEEISSHFSSTRHSPWPKVRDFLLSLPPGSFLADVGCGNGKYLGINPAVRA 426
Query: 146 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
VGCD S +L++IC++RG++ V+DA+++P R DA ISIAV+HH +T+ RR+ A+ EL
Sbjct: 427 VGCDRSVNLVQICIERGYDAFVSDALSVPLRRGSCDACISIAVIHHFATQERRRAAVREL 486
Query: 206 VRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265
+R++K G LI VWA+EQE + KY++E GS R E + +
Sbjct: 487 IRLIKVGGRALIYVWAMEQE-------YNNQKSKYLKEEAS-GSSREGG------EEL-K 531
Query: 266 TEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHR 325
TE+N + ++ + + + D L++ ++ + + +Q + VPWHL +
Sbjct: 532 TEENKAIQKEEHDRNMISDIRCTDDGLSNVTQPKIHVHTNRTAFLSQ-DLLVPWHLKGNM 590
Query: 326 AEVSGA-SACA 335
GA S CA
Sbjct: 591 ENKKGAASGCA 601
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.II.1674.1 | hypothetical protein (369 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.III.1103.1 | hypothetical protein (344 aa) | • | • | 0.597 | ||||||
 | gw1.V.3068.1 | hypothetical protein (353 aa) | • | • | 0.446 | ||||||
 | gw1.II.1559.1 | hypothetical protein (115 aa) | • | • | • | 0.410 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 377 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-19 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 3e-12 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-10 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 5e-10 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 6e-10 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 8e-10 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 3e-08 | |
| PRK11088 | 272 | PRK11088, rrmA, 23S rRNA methyltransferase A; Prov | 5e-07 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 4e-06 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 4e-05 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 2e-04 | |
| TIGR02081 | 194 | TIGR02081, metW, methionine biosynthesis protein M | 2e-04 | |
| TIGR01177 | 329 | TIGR01177, TIGR01177, TIGR01177 family protein | 3e-04 | |
| PRK00121 | 202 | PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe | 4e-04 | |
| TIGR00091 | 194 | TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt | 0.001 | |
| pfam07021 | 193 | pfam07021, MetW, Methionine biosynthesis protein M | 0.001 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 0.002 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 0.004 | |
| PRK15068 | 322 | PRK15068, PRK15068, tRNA mo(5)U34 methyltransferas | 0.004 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-19
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 127 LDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDA 182
LD GCG G + L G D+SP ++ + R + +V DA +LP+ + D
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDV 60
Query: 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
+S VLHHL ++A+ E+ RV+K G ++I
Sbjct: 61 VVSSLVLHHL---PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-12
Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 37/208 (17%)
Query: 88 KKYVHRVYDAIAPHFSST----RFA---KWPKVATFLNSLPSGSLVLDAGCGNG----KY 136
++ V +V+D +A + F W + L + G VLD CG G
Sbjct: 10 QEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLL 69
Query: 137 LGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189
VG DIS S++++ ++ E +V DA NLP+ + DA L
Sbjct: 70 AKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129
Query: 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP------LTQKYVEE 243
++ + KA++E+ RV+K G +L+ + S KYV
Sbjct: 130 RNV---TDIDKALKEMYRVLKPGGRLLVL-------EFSKPDNPVLRKAYILYYFKYVLP 179
Query: 244 WIG---PGSPRVRSPSARTLESIPETED 268
IG A ++ P+ E+
Sbjct: 180 LIGKLVAKDAEAYEYLAESIRRFPDQEE 207
|
Length = 238 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-10
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 126 VLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVDRGH-------EVLVADAVNLPY 175
VLD GCG G L P G DISP +++ EVL DA LP
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 176 RSD--FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222
+D F D IS LHHL + +EE R++K G ++++T+
Sbjct: 62 EADESF-DVIISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLTLVLA 107
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 5e-10
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 123 GSLVLDAGCGNG---KYLG--LNPDCFFVGCDISPSLIKICVDR--GHEVLV----ADAV 171
G VLD GCG G + L + P+ VG D S +++ + +R G V DA
Sbjct: 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD 79
Query: 172 NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK-KGSLVL 216
LP+ DA S VL HL +A+ E+ RV++ G +V+
Sbjct: 80 GLPFPDGSFDAVRSDRVLQHLED---PARALAEIARVLRPGGRVVV 122
|
Length = 241 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-10
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 127 LDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFG 180
LD GCG G L P + G DISP+ ++ +R +L A V L
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 181 ------DAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
D ++ VLHHL+ + + L R++K G
Sbjct: 61 LDPGSFDVVVASNVLHHLAD---PRAVLRNLRRLLKPG 95
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-10
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 122 SGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDRGH---------EVL 166
SG VLD GCG G YL L P VG DIS I+ + + E +
Sbjct: 3 SGIKVLDLGCGTG-YLTFILAEKLGPGAEVVGIDISEEAIE--KAKENAKKLGYENVEFI 59
Query: 167 VADAVNLP---YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223
D LP + D IS VL+HL K +EE++RV+K G +++++ +
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHL---PDPDKVLEEIIRVLKPGGVLIVSDPVLL 116
Query: 224 QEDKSLVTKWTPLTQKYVEEWIGPG 248
E +L+ L +E IG
Sbjct: 117 SELPALLEDLERLYAGVLEGAIGKK 141
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (127), Expect = 3e-08
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGH----- 163
V L LP G VLD GCG G+ L + VG D+SP ++ + R
Sbjct: 39 VLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG 98
Query: 164 --EVLVADAVNLPYRSDFG---DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
+ +VADA+ + D IS+ VLH L KA+ EL+RV+K G ++++
Sbjct: 99 LVDFVVADALGGVLPFEDSASFDLVISLLVLHLL----PPAKALRELLRVLKPGGRLVLS 154
Query: 219 VWA 221
Sbjct: 155 DLL 157
|
Length = 257 |
| >gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 37/103 (35%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 126 VLDAGCGNGKY-------LGLNPDCFFVGCDISPSLIKICVDRGHEV--LVADAVNLPYR 176
+LD GCG G Y L G DIS IK R +V VA + LP+
Sbjct: 89 LLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA 148
Query: 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
DA I I KA EEL RVVK G ++ITV
Sbjct: 149 DQSLDAIIRIYA---------PCKA-EELARVVKPGG-IVITV 180
|
Length = 272 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 39/155 (25%)
Query: 91 VHRVYDAIAPHFSST---------RFAKWPKVA-TFLNSLPSGSLVLDAGCGNGKYLGL- 139
V ++D+IAP + R W + +L P G VLD CG G
Sbjct: 13 VAEMFDSIAPKYDLMNDLLSFGLHR--VWRRKTIKWLGVRP-GDKVLDLACGTGDLAIAL 69
Query: 140 ----NPDCFFVGCDISPSLIKICVDRGH--------EVLVADAVNLPYRSDFGDAAISIA 187
VG D S ++ + ++ E + DA LP+ + DA ++IA
Sbjct: 70 AKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDA-VTIA 128
Query: 188 -----VLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
V KA+ E+ RV+K G ++I
Sbjct: 129 FGLRNVPD-------IDKALREMYRVLKPGGRLVI 156
|
Length = 239 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 126 VLDAGCGNGKYLGLNPDCF---FVGCDISPSLIKICVDRG------HEVLVADAVNLPYR 176
+LD GCG G+ L G DIS +++ +R +VADA +LP+
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 177 SDFGDAAI-SIAVLHHLSTESRRKKAIEELVRVVKKG 212
D I + L +LS + R + E R+++ G
Sbjct: 61 EGSFDLVICAGLSLDYLSPKQLR-ALLREAARLLRPG 96
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 24/146 (16%)
Query: 91 VHRVYDAIAPH-------FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-------KY 136
V ++D IAP S W + A L + G VLD CG G K
Sbjct: 1 VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKS 60
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGH-----EVLVADAVNLPYRSDFGDAAISIAVLHH 191
G D S ++++ + E + ADA LP+ + DA ++IA
Sbjct: 61 APDRGKV--TGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA-VTIA--FG 115
Query: 192 LSTESRRKKAIEELVRVVKKGSLVLI 217
L + +KA+ E+ RV+K G ++I
Sbjct: 116 LRNVTDIQKALREMYRVLKPGGRLVI 141
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 94 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCG--------------NGKYLGL 139
VYD + S + W ++A + G VLD CG +GK +GL
Sbjct: 45 VYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGL 104
Query: 140 N--PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
+ + V K C + E + DA +LP+ + DA I + + L
Sbjct: 105 DFSSEQLAVAASRQELKAKSCY-KNIEWIEGDATDLPFDDCYFDA---ITMGYGLRNVVD 160
Query: 198 RKKAIEELVRVVKKGSLVLI 217
R KA++E+ RV+K GS V I
Sbjct: 161 RLKAMQEMYRVLKPGSRVSI 180
|
Length = 261 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKIC-------VDRGHEVLVADA 170
G+ VLD GCG G L P G D+SP ++++ + + DA
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
Query: 171 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
+ + DA L + ++ L ++K G +++
Sbjct: 61 PDALDLLEGFDAVFIGGGGGDL------LELLDALASLLKPGGRLVLN 102
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF--VGCDISPSLIKICVDRGHEVLVADA 170
+A L L G VLD GCG G L L + F G D SP+ + I + DA
Sbjct: 13 LARLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLI-------FSLFDA 65
Query: 171 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
+ + D + VL HL +++L ++K G ++LI+ + + +
Sbjct: 66 PDPAVLAGKYDLITAFEVLEHLPD---PPALLQQLRELLKPGGVLLISTPLADDDARLF 121
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGLNPD---CFFVGCDISPSLIKICVDRGHEVLV 167
+ + LN +P GS VLD GCG+G+ L L D G +I + CV RG V+
Sbjct: 2 VDLESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQ 61
Query: 168 ADA-VNLPYRSDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKG 212
D L F D + +L L ++ ++E++RV +
Sbjct: 62 GDLDEGLEA---FPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHA 105
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized [Amino acid biosynthesis, Aspartate family]. Length = 194 |
| >gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 30/125 (24%), Positives = 42/125 (33%), Gaps = 28/125 (22%)
Query: 111 PKVATFLNSLP---SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKIC--- 158
PK+A + +L G VLD CG G +L G +GCDI ++
Sbjct: 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKV----IGCDIDWKMVAGARIN 223
Query: 159 ----VDRGHEVLVADAVNLPYRSDFGDAA-------ISIAVLHHLSTESRRKKAIEELVR 207
V DA LP S+ DA S +++EE
Sbjct: 224 LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYE-RSLEEFHE 282
Query: 208 VVKKG 212
V+K
Sbjct: 283 VLKSE 287
|
This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329 |
| >gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 21/104 (20%)
Query: 88 KKYVHR-------VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL--- 137
+ +V R AI + A F N P + L+ G G G++L
Sbjct: 2 RSFVRRRGRLTKGQQRAIEELWPRLSPAPLDWAELFGNDAP---IHLEIGFGKGEFLVEM 58
Query: 138 -GLNPDCFFVGCDISPSLIKICVDRGHE-------VLVADAVNL 173
NPD F+G ++ + + + E +L DAV +
Sbjct: 59 AKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV 102
|
Length = 202 |
| >gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 111 PKVATFLNSLPSGSLVLDAGCGNGKYL-GL---NPDCFFVGCDISPSLIKICVDRGHE-- 164
P AT + L L+ GCG G++L + NPD F+G +I ++ ++ ++
Sbjct: 7 PDFATVFGN--KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG 64
Query: 165 -----VLVADAVNLP 174
VL DA L
Sbjct: 65 LKNLHVLCGDANELL 79
|
This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194 |
| >gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 117 LNSLPSGSLVLDAGCGNGKYLGLNPDCFFV---GCDISPSLIKICVDRGHEVLVADA--- 170
+P GS VLD GCG+G L L + V G ++ + + CV +G V+ DA
Sbjct: 8 ARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAKGLSVIQGDADKG 67
Query: 171 -VNLPYRSDFGDAAISIAVLHHLSTESRRKKAI-EELVRVVKK 211
+ P D + +L +R + + +EL+R+ ++
Sbjct: 68 LEHFP------DKSFDYVILSQTLQATRNPREVLDELLRIGRR 104
|
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 19/115 (16%)
Query: 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKIC--------VDRGHEVLVADA 170
G VLD G G+G +L PD VG ++ P + + V+V DA
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 171 VNLPYRSD------FGDAAISIAVLHHLSTESRRKKAIEELVRVVK-KGSLVLIT 218
L D G+ + + +R++K G LV+IT
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVIT 115
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 22/151 (14%)
Query: 86 LEKKYVHRVYDAIAPHF-------SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL- 137
L+++ V V+ ++A + S W + G+ LD G G +
Sbjct: 4 LKEQRVGDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRGNKFLDVAGGTGDWTF 63
Query: 138 ----GLNPDCFFVGCDISPSLIKICVDRGH-------EVLVADAVNLPYRSDFGDAAISI 186
VG DI+ +++K + E L +A LP+ D D +
Sbjct: 64 GLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFEDDSFD---IV 120
Query: 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
+ L K ++E RV+K G V+
Sbjct: 121 TISFGLRNFPDYLKVLKEAFRVLKPGGRVVC 151
|
Length = 233 |
| >gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISP 152
KW +V L+ L G VLD GCGNG + LG VG D S
Sbjct: 110 KWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQ 155
|
Length = 322 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 99.93 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.92 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.92 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.89 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.88 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.82 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.82 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.81 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.81 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.81 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.8 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.78 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.77 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.75 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.75 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.73 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.73 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.72 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.72 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.72 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.71 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.71 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.71 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.71 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.7 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.69 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.68 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.68 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.68 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.68 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.68 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.67 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.65 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.65 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.64 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.64 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.64 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.64 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.62 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.62 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.61 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.61 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.59 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.59 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.58 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.57 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.57 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.55 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.55 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.55 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.54 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.54 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.53 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.53 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.52 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.52 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.51 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.51 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.5 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.5 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.49 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.47 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.46 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.43 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.42 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.4 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.39 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.39 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.39 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.39 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.37 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.36 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.36 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.36 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.33 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.32 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.32 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.31 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.3 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.29 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.28 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.27 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.25 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.24 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.24 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.24 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.24 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.22 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.21 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.2 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.19 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.19 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.18 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.17 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.17 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.15 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.15 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.12 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.12 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.11 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.11 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.09 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.09 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.09 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.09 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.07 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.06 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.04 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.04 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.03 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.03 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.03 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.03 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.99 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.98 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.98 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.98 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.97 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.97 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.97 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.96 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.96 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.96 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.96 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.95 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.95 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.95 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.94 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.92 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.91 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.89 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.87 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.84 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.83 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.83 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.83 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.82 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.82 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.8 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.79 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.78 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.77 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.76 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.72 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.69 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.67 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.66 | |
| PLN02366 | 308 | spermidine synthase | 98.65 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.65 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.64 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.64 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.64 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.6 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.59 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.57 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.54 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.53 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.52 | |
| PLN02476 | 278 | O-methyltransferase | 98.52 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.51 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.51 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.49 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.48 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.48 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.47 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.47 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.46 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.45 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.41 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.37 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.36 | |
| PLN02823 | 336 | spermine synthase | 98.33 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.33 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.32 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.31 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.29 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.27 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.25 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.24 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.24 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.22 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.22 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.21 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.2 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.2 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.2 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.13 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.12 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.1 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.1 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.04 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.03 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.02 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.0 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.99 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.98 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.97 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.96 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.94 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.94 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.93 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.91 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.87 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.85 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.82 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.78 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.77 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.75 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.74 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.74 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.73 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.73 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.72 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.72 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.72 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.52 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.51 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.5 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.46 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.45 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.42 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.42 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.4 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.29 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.27 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.16 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.1 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.06 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.06 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.04 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.03 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.01 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.95 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.91 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.79 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.64 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.62 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.57 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.55 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.49 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.46 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.42 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.3 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.3 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.26 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.23 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.23 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.18 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.16 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.0 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.97 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.87 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.87 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.84 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.52 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.5 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.46 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.61 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.43 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.21 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.14 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.09 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.06 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.75 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.68 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 93.49 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.43 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.37 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.33 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.3 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 93.23 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 92.77 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.71 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.65 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.54 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 92.45 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.44 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.9 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 91.75 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 91.74 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 91.72 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 91.53 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 91.37 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.84 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 90.74 | |
| PHA01634 | 156 | hypothetical protein | 90.5 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.1 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 89.69 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 89.51 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 88.97 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 88.81 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 88.8 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 88.63 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 88.46 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 88.2 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 87.2 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 86.43 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 86.23 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 85.8 | |
| PRK13699 | 227 | putative methylase; Provisional | 85.71 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 85.6 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 85.06 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 84.99 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 84.78 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 84.56 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 84.52 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 84.22 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 84.05 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 83.98 | |
| PLN02494 | 477 | adenosylhomocysteinase | 83.75 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 83.68 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 83.65 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 83.48 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 83.25 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 82.9 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 82.22 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 80.81 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 80.7 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 80.45 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 80.29 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 80.14 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 80.07 |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-26 Score=203.13 Aligned_cols=147 Identities=54% Similarity=0.931 Sum_probs=138.4
Q ss_pred ChhhhHHHHHHHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcC
Q 017080 83 TPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRG 162 (377)
Q Consensus 83 ~~~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~ 162 (377)
..+++++|++++|+.++++|..+++..|+...+++...+.+..++|+|||+|.++...|.+.++|.|++...+..++..+
T Consensus 6 ~~eleqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~ 85 (293)
T KOG1331|consen 6 LTELEQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSG 85 (293)
T ss_pred HHHHHHHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCC
Confidence 45889999999999999999999999999999999999999999999999999999899999999999999999999997
Q ss_pred C-eEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhh
Q 017080 163 H-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229 (377)
Q Consensus 163 ~-~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 229 (377)
. ....+|+..+|+++.+||.+++..++||+....+...+++++.|+|+|||..++..|...+.....
T Consensus 86 ~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~~~~ 153 (293)
T KOG1331|consen 86 GDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQHQSSS 153 (293)
T ss_pred CceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhccCccc
Confidence 7 699999999999999999999999999999999999999999999999999999999987665443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=202.75 Aligned_cols=186 Identities=24% Similarity=0.394 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHhhCcccccc-------cccchHHHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHH
Q 017080 86 LEKKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPS 153 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~-------~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~ 153 (377)
..++++.++|+++++.||.. .+..|++....+....+|.+|||+|||||.++. . .+..+|+|+|+|+.
T Consensus 4 ~k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 4 AKEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp ---------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred cHHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 34567999999999999862 355677655444556788999999999999653 2 56789999999999
Q ss_pred HHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccc
Q 017080 154 LIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (377)
Q Consensus 154 ~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~ 226 (377)
|++.|+++ +++++++|++++|+++++||+|++.+.+++++| +.++|+|++|+|||||.++|.++......
T Consensus 84 ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 84 MLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp HHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred HHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 99999976 689999999999999999999999999999999 88999999999999999999988755321
Q ss_pred --hhhhhcc----ccchHHHHhhhhCCCCCCc-CCCCCCCcccHHhHhhcCCCcc
Q 017080 227 --KSLVTKW----TPLTQKYVEEWIGPGSPRV-RSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 227 --~~~~~~~----~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
..+...+ .|.....+......+.-.. ....+.+.+++.++++++||+.
T Consensus 161 ~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~ 215 (233)
T PF01209_consen 161 LLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKN 215 (233)
T ss_dssp HHHHHHHH-----------------------------------------------
T ss_pred hhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111111 1111111110000000001 1245777899999999999965
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-25 Score=197.17 Aligned_cols=180 Identities=23% Similarity=0.321 Sum_probs=136.5
Q ss_pred hHHHHHHHHHhhCcccccc-------cccchHHHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHH
Q 017080 87 EKKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLI 155 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~-------~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~ 155 (377)
.++.++++|+++++.||.. .+..|++..-....+.+|.+|||||||||.++. ..+.++|+|+|+|+.|+
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML 88 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML 88 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH
Confidence 3578999999999999863 366787655555555589999999999999763 35578999999999999
Q ss_pred HHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh
Q 017080 156 KICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (377)
Q Consensus 156 ~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 228 (377)
+.++++ +++|+++|++++||+|++||+|.+.+.|+++++ ++++|+|++|+|||||++++.++......
T Consensus 89 ~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~~p~~~-- 163 (238)
T COG2226 89 EVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFSKPDNP-- 163 (238)
T ss_pred HHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcCCCCch--
Confidence 999988 377999999999999999999999999999999 89999999999999999999987754221
Q ss_pred hhhccccchHHHHhh----hhCCCCC----C-----cCCCCCCCcccHHhHhhcCCCcc
Q 017080 229 LVTKWTPLTQKYVEE----WIGPGSP----R-----VRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~----w~~~~~~----~-----~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.+...+..+... ++..... . .....+.+.+++.++++++||..
T Consensus 164 ---~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~ 219 (238)
T COG2226 164 ---VLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEE 219 (238)
T ss_pred ---hhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceE
Confidence 011111111111 1110000 0 00144778889999999999954
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-23 Score=189.64 Aligned_cols=179 Identities=22% Similarity=0.301 Sum_probs=131.2
Q ss_pred HHHHHHHHHhhCcccccc-------cccchHHHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHH
Q 017080 88 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI 155 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~-------~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~ 155 (377)
.+.+.+.|+++++.||.. ....|++.......+.++.+|||+|||||.++. . .+..+|+|+|+|+.|+
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml 111 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL 111 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 567888999999999852 133455544434466788999999999999653 2 3557999999999999
Q ss_pred HHHHHc----------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 156 KICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 156 ~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
+.|+++ +++++++|++++|+++++||+|++..+++|+++ +..++++++|+|||||.+++.++.....
T Consensus 112 ~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 112 AVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred HHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 998754 478999999999999999999999999999998 8999999999999999999999875432
Q ss_pred chhhhhccccchHHHHhhhhCC------CCCC-----cCCCCCCCcccHHhHhhcCCCcc
Q 017080 226 DKSLVTKWTPLTQKYVEEWIGP------GSPR-----VRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~w~~~------~~~~-----~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
. .... ....+......+ .... .....+.+.+++.++++++||++
T Consensus 189 ~--~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~ 243 (261)
T PLN02233 189 P--FTTS---MQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSS 243 (261)
T ss_pred H--HHHH---HHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCE
Confidence 1 1010 001111000000 0000 01134788999999999999965
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=176.62 Aligned_cols=206 Identities=20% Similarity=0.242 Sum_probs=153.0
Q ss_pred cCccccCcccCCCCCCCChhhhHH-HHHHHHHhhCccccc-------ccccchHHHHHHHhCCCCCCEEEEECCccCccc
Q 017080 66 SVSTGEDQRCSSSSIKSTPELEKK-YVHRVYDAIAPHFSS-------TRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL 137 (377)
Q Consensus 66 ~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~a~~y~~-------~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~ 137 (377)
..+.+....|.|+++.+..+.+++ .+..+|+..+..||. ..++.|+.+.---....++.++||++||||..+
T Consensus 36 ~~~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDia 115 (296)
T KOG1540|consen 36 SPSLSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIA 115 (296)
T ss_pred ccccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhH
Confidence 456667788999999998887776 688899999999986 346678765544344556799999999999964
Q ss_pred ----cc------CCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 138 ----GL------NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 138 ----~~------~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
+. ..+.+|+++|+||.|+..++++ .+.++.+|++++||++++||...+.+.|..+++
T Consensus 116 Fril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th--- 192 (296)
T KOG1540|consen 116 FRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH--- 192 (296)
T ss_pred HHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC---
Confidence 21 2347999999999999999887 278999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccCcEEEEEEcCCCc-cc-hhhhhccccchHHHHhhhhCCCCCCcC-----CCCCCCcccHHhHhhcC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWAVEQ-ED-KSLVTKWTPLTQKYVEEWIGPGSPRVR-----SPSARTLESIPETEDNG 270 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~-----~~~~~~~~~l~~~l~~a 270 (377)
++++|+|++|+|||||++.+.+++... +. ..+...+.--.-..+..|+........ ...+.+.++++.+.++|
T Consensus 193 ~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mieda 272 (296)
T KOG1540|consen 193 IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDA 272 (296)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHc
Confidence 899999999999999999999887543 11 111111110001111223332222111 24577788999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||..
T Consensus 273 GF~~ 276 (296)
T KOG1540|consen 273 GFSS 276 (296)
T ss_pred CCcc
Confidence 9955
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=169.96 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=112.7
Q ss_pred CCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
++.+|||||||+|.++.. ..+++|+|+|+|+.+++.|+.+ ++.++++|++++++.+++||+|++..+++|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 567999999999997642 5678999999999999999864 477899999998887889999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+.+ +..+++++.++|||||.+++.+++.... ..... .....+...|.... ...+..+++++++.++++++|
T Consensus 211 v~d---~~~~L~~l~r~LkPGG~liist~nr~~~--~~~~~--i~~~eyi~~~lp~g--th~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 211 VAN---PAEFCKSLSALTIPNGATVLSTINRTMR--AYAST--IVGAEYILRWLPKG--THQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred cCC---HHHHHHHHHHHcCCCcEEEEEECCcCHH--HHHHh--hhhHHHHHhcCCCC--CcCccCCCCHHHHHHHHHHcC
Confidence 999 8899999999999999999998764321 00000 01123344443321 112345789999999999999
Q ss_pred Cccc
Q 017080 272 EEQG 275 (377)
Q Consensus 272 F~~~ 275 (377)
|.+.
T Consensus 282 f~i~ 285 (322)
T PLN02396 282 VDVK 285 (322)
T ss_pred CeEE
Confidence 9873
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-20 Score=167.60 Aligned_cols=178 Identities=20% Similarity=0.332 Sum_probs=128.1
Q ss_pred HHHHHHHHHhhCcccccc-------cccchHHHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHH
Q 017080 88 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI 155 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~-------~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~ 155 (377)
.+.+.++|+++++.||.. ....|++.......+.++.+|||+|||+|.++. . .++.+|+|+|+|+.++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 567889999999999862 233444333333356678999999999999753 2 4677999999999999
Q ss_pred HHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh
Q 017080 156 KICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (377)
Q Consensus 156 ~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 228 (377)
+.++++ ++.++.+|+..+++++++||+|++..+++|+++ +.++++++.++|+|||.+++.+....... .
T Consensus 84 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-~ 159 (231)
T TIGR02752 84 SVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLETSQPTIP-G 159 (231)
T ss_pred HHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEECCCCCCh-H
Confidence 988865 478899999998888899999999999999999 88999999999999999998876533211 1
Q ss_pred hhhc-------cccchHHHHh------hhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 229 LVTK-------WTPLTQKYVE------EWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 229 ~~~~-------~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+... ..+....... .|.. .....+++.+++.++|+++||++
T Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~aGf~~ 213 (231)
T TIGR02752 160 FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ-----ESTRDFPGMDELAEMFQEAGFKD 213 (231)
T ss_pred HHHHHHHHHcChhHHhhHHhcCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHcCCCe
Confidence 0000 0000000000 0100 01134678899999999999966
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=166.38 Aligned_cols=185 Identities=20% Similarity=0.252 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHhhCcccccccccchHHHHHHHhCC--CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc
Q 017080 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+++.+.+.|++.+..|+............++..+ .++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++
T Consensus 4 ~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 4 VNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred cCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence 45677888999999999854322111111222222 3467999999999987643 4568999999999999999987
Q ss_pred --CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHH
Q 017080 162 --GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK 239 (377)
Q Consensus 162 --~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 239 (377)
...++++|++.+++++++||+|++..+++|+++ +..+|.++.++|||||.++++++.... ...
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~~~~~~~-~~e----------- 148 (251)
T PRK10258 84 DAADHYLAGDIESLPLATATFDLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFTTLVQGS-LPE----------- 148 (251)
T ss_pred CCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEEeCCCCc-hHH-----------
Confidence 357899999999998999999999999999999 889999999999999999999876432 111
Q ss_pred HHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCccccCCcccCCcch
Q 017080 240 YVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKL 286 (377)
Q Consensus 240 ~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~~~~~~~~~~~~~ 286 (377)
+...|... ........+.+.+++.+++...|+........+.++..
T Consensus 149 l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~~ 194 (251)
T PRK10258 149 LHQAWQAV-DERPHANRFLPPDAIEQALNGWRYQHHIQPITLWFDDA 194 (251)
T ss_pred HHHHHHHh-ccCCccccCCCHHHHHHHHHhCCceeeeeEEEEECCCH
Confidence 11112111 11223456778899999999988865443344444433
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-20 Score=158.45 Aligned_cols=153 Identities=24% Similarity=0.337 Sum_probs=113.9
Q ss_pred cccccchHHHHHHHh-CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCce
Q 017080 104 STRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG 180 (377)
Q Consensus 104 ~~~~~~~~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~f 180 (377)
..+...+.++...+. ...++.+|||||||+|.++.. ..+.+++|+|+|+.+++. ..+.....+....+.++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 3 RHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp -GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---TTSEEEEEECHTHHCHSSSE
T ss_pred hhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---hhhhhhhhhhhhhhccccch
Confidence 334455666555554 367889999999999998753 345599999999999988 44556666556666778999
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 260 (377)
|+|++..+++|+++ +..+|+++.++|||||++++.++....... .....|... .....+..+++.
T Consensus 80 D~i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~ 144 (161)
T PF13489_consen 80 DLIICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNRDDPSP-----------RSFLKWRYD-RPYGGHVHFFSP 144 (161)
T ss_dssp EEEEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBTTSHHH-----------HHHHHCCGT-CHHTTTTEEBBH
T ss_pred hhHhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCCcchhh-----------hHHHhcCCc-CccCceeccCCH
Confidence 99999999999998 899999999999999999999987542111 111112111 111144578899
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
+++.++++++||++
T Consensus 145 ~~~~~ll~~~G~~i 158 (161)
T PF13489_consen 145 DELRQLLEQAGFEI 158 (161)
T ss_dssp HHHHHHHHHTTEEE
T ss_pred HHHHHHHHHCCCEE
Confidence 99999999999976
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=167.51 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=108.6
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
..++.+|||||||+|.++. ..|+.+|+|+|+|+.|++.|++++++++++|+++++ ++++||+|++..++||+++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d- 104 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPE- 104 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEehhhhhCCC-
Confidence 3567899999999999763 257889999999999999999999999999998874 5689999999999999998
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcCCCcc-chhhhhccccchHHHH--hhhhCCCC--CCcCCCCCCCcccHHhHhhcC
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQE-DKSLVTKWTPLTQKYV--EEWIGPGS--PRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~--~~w~~~~~--~~~~~~~~~~~~~l~~~l~~a 270 (377)
+..++++++++|||||.+++..+..... .... ..... ..|..... +........+.+.+.++|+++
T Consensus 105 --~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~a 175 (255)
T PRK14103 105 --HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAA-------VRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDA 175 (255)
T ss_pred --HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHH-------HHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhC
Confidence 8899999999999999999986543211 1110 00110 12321111 111123456788999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 176 Gf~v 179 (255)
T PRK14103 176 GCKV 179 (255)
T ss_pred CCeE
Confidence 9965
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-19 Score=169.99 Aligned_cols=146 Identities=21% Similarity=0.276 Sum_probs=107.7
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.++.+|||||||+|.++.. ..+++|+|+|+|+.|++.++++ +++++++|+.++|+++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 5678999999999997542 2378999999999999988764 4789999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
+|+++ +..++++++|+|||||.+++.++......... ....+.....+...... .......+.+++.+++++
T Consensus 197 ~h~~d---~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~-~~l~~~~~~~~~~i~~~----~~~p~~~s~~~~~~~l~~ 268 (340)
T PLN02244 197 EHMPD---KRKFVQELARVAAPGGRIIIVTWCHRDLEPGE-TSLKPDEQKLLDKICAA----YYLPAWCSTSDYVKLAES 268 (340)
T ss_pred hccCC---HHHHHHHHHHHcCCCcEEEEEEeccccccccc-ccCCHHHHHHHHHHHhh----ccCCCCCCHHHHHHHHHH
Confidence 99999 88999999999999999999987643211000 00000011111111110 011234578899999999
Q ss_pred CCCcc
Q 017080 270 GSEEQ 274 (377)
Q Consensus 270 aGF~~ 274 (377)
+||.+
T Consensus 269 aGf~~ 273 (340)
T PLN02244 269 LGLQD 273 (340)
T ss_pred CCCCe
Confidence 99966
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-19 Score=164.62 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=111.4
Q ss_pred hHHHHHHHhCC-CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC-CCC
Q 017080 110 WPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRS 177 (377)
Q Consensus 110 ~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~ 177 (377)
|+.+..++..+ .++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.|+++ +++++++|+.+++ +.+
T Consensus 31 ~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 31 WQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 44444555444 3467999999999997642 4567999999999999999875 3678899988764 567
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccch-hhhhccccchHHHHhhhhCCCCCCcCCCC
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK-SLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 256 (377)
++||+|++..+++|+.+ +..+++++.++|||||.+++..++...... ..... ..................+..
T Consensus 111 ~~fD~V~~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~ 184 (255)
T PRK11036 111 TPVDLILFHAVLEWVAD---PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG---NFDYVQAGMPKRKKRTLSPDY 184 (255)
T ss_pred CCCCEEEehhHHHhhCC---HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc---ChHHHHhcCccccccCCCCCC
Confidence 89999999999999998 889999999999999999998876542110 00000 000000000000011111234
Q ss_pred CCCcccHHhHhhcCCCcc
Q 017080 257 ARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 257 ~~~~~~l~~~l~~aGF~~ 274 (377)
.++++++.++++++||++
T Consensus 185 ~~~~~~l~~~l~~aGf~~ 202 (255)
T PRK11036 185 PLDPEQVYQWLEEAGWQI 202 (255)
T ss_pred CCCHHHHHHHHHHCCCeE
Confidence 678899999999999965
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-19 Score=159.14 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhhCccccccc-------ccchHH-HHHHHh-CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHH
Q 017080 87 EKKYVHRVYDAIAPHFSSTR-------FAKWPK-VATFLN-SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL 154 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~-------~~~~~~-~~~~l~-~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~ 154 (377)
..+.+.+.|+++++.||... ...|++ +...+. ...++.+|||||||||.++.. ..+.+|+|+|+|+.|
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~M 86 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENM 86 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 45678899999999998632 233543 333333 234578999999999997542 115799999999999
Q ss_pred HHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccC
Q 017080 155 IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212 (377)
Q Consensus 155 ~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lkpg 212 (377)
++.|+++ ..++++|++++|+++++||+|++..+++|+++ +.+++++++|+|||.
T Consensus 87 l~~a~~~-~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 87 LKMNLVA-DDKVVGSFEALPFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHhc-cceEEechhhCCCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCc
Confidence 9999887 46789999999999999999999999999999 889999999999994
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-19 Score=158.27 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=110.6
Q ss_pred CCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+|.+|||||||-|.++. ...|+.|+|+|+|+.+++.|+.+ + +++.+..++++....++||+|+|..|++|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 78999999999999875 26679999999999999999976 3 4577788888766568999999999999999
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCc
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEE 273 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~ 273 (377)
+ +..+++.+.+++||||.+++++++.......+ .-+...++-.|+.. +......+..++++..++..+|+.
T Consensus 139 d---p~~~~~~c~~lvkP~G~lf~STinrt~ka~~~----~i~~ae~vl~~vP~--gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 139 D---PESFLRACAKLVKPGGILFLSTINRTLKAYLL----AIIGAEYVLRIVPK--GTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred C---HHHHHHHHHHHcCCCcEEEEeccccCHHHHHH----HHHHHHHHHHhcCC--cchhHHHhcCHHHHHHhcccCCce
Confidence 9 88999999999999999999998743211110 01122344445442 122235577788999999998886
Q ss_pred c
Q 017080 274 Q 274 (377)
Q Consensus 274 ~ 274 (377)
+
T Consensus 210 ~ 210 (243)
T COG2227 210 I 210 (243)
T ss_pred E
Confidence 6
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=154.06 Aligned_cols=141 Identities=21% Similarity=0.297 Sum_probs=108.6
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+.++.+|||||||+|..+.. ..+++|+|+|+|+.|++.++++ ++.+..+|+...++++++||+|++..+++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 457889999999999986532 3467999999999999999875 47889999998888899999999999999
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
|++..+ +..++++++++|||||.+++.++..... ..|. ..+ ..+... ......+.+++.++|+++
T Consensus 129 h~~~~d-~~~~l~~i~r~LkPGG~lvi~d~~~~~~-----~~~~---~~~-~~~~~~-----~~~~~~~~~~~~~~l~~a 193 (263)
T PTZ00098 129 HLSYAD-KKKLFEKCYKWLKPNGILLITDYCADKI-----ENWD---EEF-KAYIKK-----RKYTLIPIQEYGDLIKSC 193 (263)
T ss_pred hCCHHH-HHHHHHHHHHHcCCCcEEEEEEeccccc-----cCcH---HHH-HHHHHh-----cCCCCCCHHHHHHHHHHC
Confidence 987433 8899999999999999999998754321 1111 111 111110 113456788999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 194 GF~~ 197 (263)
T PTZ00098 194 NFQN 197 (263)
T ss_pred CCCe
Confidence 9966
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-18 Score=133.46 Aligned_cols=88 Identities=34% Similarity=0.577 Sum_probs=76.5
Q ss_pred EEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHH
Q 017080 127 LDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (377)
Q Consensus 127 LDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~ 199 (377)
||+|||+|..+.. .++.+|+|+|+|+.+++.++++ ++.+..+|+.++|+++++||+|++..+++|+++ +.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~---~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED---PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---HH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC---HH
Confidence 8999999997542 4688999999999999999987 456999999999999999999999999999966 89
Q ss_pred HHHHHHHHccccCcEEEE
Q 017080 200 KAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~l~i 217 (377)
++++++.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=153.39 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=105.4
Q ss_pred CCCCCEEEEECCccCcccc------cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 120 LPSGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~------~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
+.++.+|||||||+|..+. ..|+++++|+|+|+.|++.|+++ +++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 4578899999999999642 25789999999999999999876 478899999887753 5899999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccc--hh-hhhccccch--HHHH-hhhhCCCCCCcCCCCCCC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED--KS-LVTKWTPLT--QKYV-EEWIGPGSPRVRSPSART 259 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~-~~~~~~~~~--~~~~-~~w~~~~~~~~~~~~~~~ 259 (377)
..++||+++.+ ...++++++++|||||.+++.+....... .. ....|.... ..+. .++..............+
T Consensus 132 ~~~l~~l~~~~-~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 132 NFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred hhHHHhCCHHH-HHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 99999998644 68999999999999999999874432211 11 111111000 0000 000000000011234568
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.++..++|+++||..
T Consensus 211 ~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 211 VETHKARLHKAGFEH 225 (247)
T ss_pred HHHHHHHHHHcCchh
Confidence 899999999999955
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=156.06 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=119.9
Q ss_pred hhhHHHHHH--HHHhhCccccccc-ccchHH-HH-HHHh---CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCH
Q 017080 85 ELEKKYVHR--VYDAIAPHFSSTR-FAKWPK-VA-TFLN---SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISP 152 (377)
Q Consensus 85 ~~~~~~~~~--~y~~~a~~y~~~~-~~~~~~-~~-~~l~---~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~ 152 (377)
..-+++... +|+..+..||... ...|.+ +. ..+. ...++.+|||||||+|.++. ..++.+|+|+|+|+
T Consensus 68 ~~~~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~ 147 (340)
T PLN02490 68 RFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP 147 (340)
T ss_pred chhhhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH
Confidence 344444444 4677888888632 222221 11 1222 12467899999999999642 24667999999999
Q ss_pred HHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh
Q 017080 153 SLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (377)
Q Consensus 153 ~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 228 (377)
.|++.++++ +++++.+|++++++++++||+|++..+++|+++ +..+|++++++|||||.+++.......
T Consensus 148 ~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~---- 220 (340)
T PLN02490 148 HQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACLIGPVHPT---- 220 (340)
T ss_pred HHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC---HHHHHHHHHHhcCCCcEEEEEEecCcc----
Confidence 999999875 688999999999988999999999999999999 789999999999999999887543211
Q ss_pred hhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 229 LVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.|. ...+...| ..+.+.+++.++++++||++
T Consensus 221 ---~~~--~r~~~~~~----------~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 221 ---FWL--SRFFADVW----------MLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ---hhH--HHHhhhhh----------ccCCCHHHHHHHHHHCCCeE
Confidence 010 00111112 12346789999999999976
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=156.93 Aligned_cols=147 Identities=19% Similarity=0.279 Sum_probs=104.0
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHH--------cCCeEEEeeCCCCCCCCCc
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVD--------RGHEVLVADAVNLPYRSDF 179 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~~~~~~~~~ 179 (377)
..+...+..+ ++.+|||||||+|.++.. .....|+|+|+|+.++..++. .++.++.+|++++|+ +++
T Consensus 112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence 3344444433 578999999999997632 222369999999998865432 158899999999988 889
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCC
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSART 259 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 259 (377)
||+|+|..+++|+.+ +..+|++++++|+|||.+++.++.......... + + ...|.. ........+
T Consensus 190 FD~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l--~-p-~~~y~~--------~~~~~~lps 254 (322)
T PRK15068 190 FDTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLETLVIDGDENTVL--V-P-GDRYAK--------MRNVYFIPS 254 (322)
T ss_pred cCEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEEEEEecCCCcccc--C-c-hhHHhc--------CccceeCCC
Confidence 999999999999999 889999999999999999998754332211100 0 0 001100 000111347
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.+++.++|+++||++
T Consensus 255 ~~~l~~~L~~aGF~~ 269 (322)
T PRK15068 255 VPALKNWLERAGFKD 269 (322)
T ss_pred HHHHHHHHHHcCCce
Confidence 789999999999977
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=149.13 Aligned_cols=150 Identities=15% Similarity=0.205 Sum_probs=105.3
Q ss_pred CCCCEEEEECCccCcccc----c--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++.+|||||||+|.++. . .|+++++|+|+|+.|++.|+++ +++++++|+..++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 577899999999999753 2 4789999999999999999875 368899999988754 48999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHh--hh-----hCCCCCCcCCCCCCC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVE--EW-----IGPGSPRVRSPSART 259 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~w-----~~~~~~~~~~~~~~~ 259 (377)
.++||+++.+ +..++++++++|||||.+++.++....... ...........+.. .+ ..............+
T Consensus 130 ~~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 130 FTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKFRFEDTK-INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred cchhhCCHHH-HHHHHHHHHHhcCCCeEEEEeecccCCCHh-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 9999998644 789999999999999999999764322111 10100000000000 00 000000111245678
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.+++.++++++||..
T Consensus 208 ~~~~~~~l~~aGF~~ 222 (239)
T TIGR00740 208 IETHKARLKNVGFSH 222 (239)
T ss_pred HHHHHHHHHHcCCch
Confidence 899999999999965
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=150.29 Aligned_cols=145 Identities=25% Similarity=0.325 Sum_probs=108.3
Q ss_pred CCCCCCEEEEECCccCccccc----C-CCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~----~-~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+|||+|.++.. . +..+++|+|+|+.+++.++++ ++.+...|+..+++++++||+|++..
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 467788999999999997532 3 678999999999999998875 47888999988888889999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+++ +..+++++.++|||||.+++.++........ .............|... .........+.++|
T Consensus 96 ~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l 164 (241)
T PRK08317 96 VLQHLED---PARALAEIARVLRPGGRVVVLDTDWDTLVWH--SGDRALMRKILNFWSDH------FADPWLGRRLPGLF 164 (241)
T ss_pred hhhccCC---HHHHHHHHHHHhcCCcEEEEEecCCCceeec--CCChHHHHHHHHHHHhc------CCCCcHHHHHHHHH
Confidence 9999999 8899999999999999999987542211000 00011122233333321 12233446799999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||.+
T Consensus 165 ~~aGf~~ 171 (241)
T PRK08317 165 REAGLTD 171 (241)
T ss_pred HHcCCCc
Confidence 9999976
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=147.43 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=105.7
Q ss_pred CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc---------C----CeEEEeeCCCCCCCCCceeEEEecc
Q 017080 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------G----HEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---------~----~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
|++|||+|||+|.++.- ..++.|+|+|+|+.|++.|+++ + +++...|++.+ .+.||+|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 47899999999998752 5678999999999999999987 1 45666676665 34599999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+.| +..++..+.++|||||.++|++.+...... .. .-+...+...|.. .....+..+.+++++..++
T Consensus 167 vleHV~d---p~~~l~~l~~~lkP~G~lfittinrt~lS~--~~--~i~~~E~vl~ivp--~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTINRTILSF--AG--TIFLAEIVLRIVP--KGTHTWEKFINPEELTSIL 237 (282)
T ss_pred HHHHHhC---HHHHHHHHHHHhCCCCceEeeehhhhHHHh--hc--cccHHHHHHHhcC--CCCcCHHHcCCHHHHHHHH
Confidence 9999999 899999999999999999999876432110 00 0112233333332 1222346788999999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+.+|+.+
T Consensus 238 ~~~~~~v 244 (282)
T KOG1270|consen 238 NANGAQV 244 (282)
T ss_pred HhcCcch
Confidence 9999866
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=138.47 Aligned_cols=137 Identities=28% Similarity=0.423 Sum_probs=102.8
Q ss_pred CCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~ 186 (377)
.++.+|||+|||+|.++. ..++.+++|+|+|+.|++.|+++ +++|.++|+.+++ ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 357899999999999642 36789999999999999999984 5899999999976 55 899999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
.+++|+.+ +..+++++.++|+|||.+++.++.........+... ...+...|.... ... ..+++..+
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~--~~~~~~~~ 147 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEEL---MNLYSEVWSMIY-----IGN--DKEEWKYI 147 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHH---HHHHHHHHHHCC----------CCCGHHHH
T ss_pred CchhhccC---HHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHH---HHHHHHHhhhhh-----ccc--CHHHHHHH
Confidence 99999998 889999999999999999999876322211111111 112233333221 111 77889999
Q ss_pred hhcCC
Q 017080 267 EDNGS 271 (377)
Q Consensus 267 l~~aG 271 (377)
+++||
T Consensus 148 ~~~ag 152 (152)
T PF13847_consen 148 LEEAG 152 (152)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 99998
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-17 Score=154.12 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=99.0
Q ss_pred CCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHH---c-----CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVD---R-----GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~---~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.++.+|||||||+|.++.. ..+ ..|+|+|+|+.|+..++. . ++.+...++++++. ..+||+|++.+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchh
Confidence 4578999999999997532 233 379999999999865432 1 46678888888875 3589999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
+|+++ +..+|++++++|||||.+++.+........... .+. ..+. .+ .......+.+++..+|++
T Consensus 199 ~H~~d---p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l---~p~-~ry~-k~-------~nv~flpS~~~L~~~L~~ 263 (314)
T TIGR00452 199 YHRKS---PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVL---VPK-DRYA-KM-------KNVYFIPSVSALKNWLEK 263 (314)
T ss_pred hccCC---HHHHHHHHHHhcCCCCEEEEEEEEecCcccccc---Cch-HHHH-hc-------cccccCCCHHHHHHHHHH
Confidence 99999 889999999999999999998765432211110 000 0010 00 001123577899999999
Q ss_pred CCCccc
Q 017080 270 GSEEQG 275 (377)
Q Consensus 270 aGF~~~ 275 (377)
+||++.
T Consensus 264 aGF~~V 269 (314)
T TIGR00452 264 VGFENF 269 (314)
T ss_pred CCCeEE
Confidence 999773
|
Known examples to date are restricted to the proteobacteria. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=137.65 Aligned_cols=128 Identities=23% Similarity=0.347 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc---
Q 017080 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--- 161 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--- 161 (377)
......+|+..+..|...-+...+ .++ .......|||||||||..... .|+..|+++|+++.|-+.+.+.
T Consensus 46 ~~~ft~~yne~~~~ykrelFs~i~---~~~-gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 46 NSNFTSIYNEIADSYKRELFSGIY---YFL-GKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhH---HHh-cccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 344455677777766322222211 122 112234689999999997765 5788999999999999888765
Q ss_pred ----CCe-EEEeeCCCCC-CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 ----GHE-VLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 ----~~~-~~~~d~~~~~-~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++. |++++.+++| ++++++|.|++..+|....+ +.+.|+++.|+|||||++++.+...
T Consensus 122 ~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~---~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 122 KKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVED---PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred ccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCC---HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 454 8999999998 89999999999999999999 8999999999999999999987553
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-17 Score=142.44 Aligned_cols=148 Identities=23% Similarity=0.352 Sum_probs=119.6
Q ss_pred HhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C-CCCCCceeEEEeccchhh
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~-~~~~~~fD~V~~~~~l~h 191 (377)
...++||++|||+|||.|.++.. ..++...|+|+++..+..+.++++.++++|++. + .|++++||.||++.+|++
T Consensus 8 ~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 8 AEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred HHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 34568999999999999998753 678899999999999999999999999999987 4 389999999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCc--cchhh-hhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhh
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ--EDKSL-VTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETED 268 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~ 268 (377)
+.+ |..+|+|+.|+ |...+++.++... ....+ +...+|.+..+...|+.. ...++.+..+++++.+
T Consensus 88 ~~~---P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT-----PNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 88 VRR---PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT-----PNIHLCTIKDFEDLCR 156 (193)
T ss_pred HhH---HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC-----CCcccccHHHHHHHHH
Confidence 998 89999999877 4466777666432 22222 255677777777888762 2245788899999999
Q ss_pred cCCCccc
Q 017080 269 NGSEEQG 275 (377)
Q Consensus 269 ~aGF~~~ 275 (377)
+.|+.+.
T Consensus 157 ~~~i~I~ 163 (193)
T PF07021_consen 157 ELGIRIE 163 (193)
T ss_pred HCCCEEE
Confidence 9999773
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=159.33 Aligned_cols=137 Identities=25% Similarity=0.354 Sum_probs=106.8
Q ss_pred CCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
+.++.+|||||||+|..+. ...+++|+|+|+|+.+++.|+++ ++.|.++|+...++++++||+|++..+++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 4678899999999997542 23478999999999999999775 46889999999888889999999999999
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
|+++ +..++++++++|||||.+++.++........ ..+ ..+... ......+.+++.++++++
T Consensus 344 h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~---------~~~-~~~~~~-----~g~~~~~~~~~~~~l~~a 405 (475)
T PLN02336 344 HIQD---KPALFRSFFKWLKPGGKVLISDYCRSPGTPS---------PEF-AEYIKQ-----RGYDLHDVQAYGQMLKDA 405 (475)
T ss_pred ccCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCCc---------HHH-HHHHHh-----cCCCCCCHHHHHHHHHHC
Confidence 9999 8899999999999999999998764321100 001 011110 012356778899999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 406 GF~~ 409 (475)
T PLN02336 406 GFDD 409 (475)
T ss_pred CCee
Confidence 9966
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=143.32 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=107.8
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccc--------cCCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCC
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRS 177 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~--------~~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~ 177 (377)
+..+........++.+|||||||+|.++. ..++.+|+|+|+|+.|++.|+++ ++++.+.++..++.++
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~ 127 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEG 127 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccC
Confidence 33443333334567899999999998642 13557999999999999999886 5778888888877778
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCC
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA 257 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 257 (377)
++||+|+++.++||+++++ ...+++++.++++ |.+++.++.......... ...........+...........+
T Consensus 128 ~~fD~V~~~~~lhh~~d~~-~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~s~~~~ 201 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAE-VVRLLADSAALAR--RLVLHNDLIRSRLAYALF---WAGTRLLSRSSFVHTDGLLSVRRS 201 (232)
T ss_pred CCccEEEECCeeecCChHH-HHHHHHHHHHhcC--eeEEEeccccCHHHHHHH---HHHHHHhccCceeeccchHHHHhh
Confidence 8999999999999999854 5789999999998 566676655432111000 000000000011111122334678
Q ss_pred CCcccHHhHhhcCCCcc
Q 017080 258 RTLESIPETEDNGSEEQ 274 (377)
Q Consensus 258 ~~~~~l~~~l~~aGF~~ 274 (377)
++.+++.+++++ ||.+
T Consensus 202 ~~~~el~~ll~~-Gf~~ 217 (232)
T PRK06202 202 YTPAELAALAPQ-GWRV 217 (232)
T ss_pred cCHHHHHHHhhC-CCeE
Confidence 999999999999 9955
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=147.44 Aligned_cols=141 Identities=21% Similarity=0.248 Sum_probs=107.3
Q ss_pred hCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
..+.++.+|||||||+|..+. ..+..+|+|+|+|+.|++.|+++ ++++..+|++++++++++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 346789999999999998531 24566899999999999999875 577889999999988899999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHh
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 265 (377)
..+++|.++ ...++++++++|||||++++.++......... .......|.. ......+.+++.+
T Consensus 153 ~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~-------~~~~~~~~~~------~~~~~~~~~e~~~ 216 (272)
T PRK11873 153 NCVINLSPD---KERVFKEAFRVLKPGGRFAISDVVLRGELPEE-------IRNDAELYAG------CVAGALQEEEYLA 216 (272)
T ss_pred cCcccCCCC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHH-------HHHhHHHHhc------cccCCCCHHHHHH
Confidence 999999998 78999999999999999999876543211100 0111111211 0122346678999
Q ss_pred HhhcCCCcc
Q 017080 266 TEDNGSEEQ 274 (377)
Q Consensus 266 ~l~~aGF~~ 274 (377)
+|+++||.+
T Consensus 217 ~l~~aGf~~ 225 (272)
T PRK11873 217 MLAEAGFVD 225 (272)
T ss_pred HHHHCCCCc
Confidence 999999976
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-16 Score=141.77 Aligned_cols=134 Identities=26% Similarity=0.417 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHhhCcccccc-c------ccchH-HHHHHHhCCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCH
Q 017080 86 LEKKYVHRVYDAIAPHFSST-R------FAKWP-KVATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISP 152 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~-~------~~~~~-~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~ 152 (377)
..++.+.+.|+.++..|+.. . ...|. .+...+ ...++.+|||+|||+|.++. ..+ ..+++|+|+++
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 86 (239)
T PRK00216 8 EKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWL-GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE 86 (239)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHh-CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence 34567788899998888731 1 11222 222222 24467899999999999753 233 58999999999
Q ss_pred HHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 153 SLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 153 ~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.+++.++++ ++.+..+|+.+++++.++||+|++..+++|+++ +..+++++.++|+|||.+++.++...
T Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~---~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 87 GMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD---IDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred HHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC---HHHHHHHHHHhccCCcEEEEEEecCC
Confidence 999998875 367888999888877789999999999999998 88999999999999999999876543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=140.68 Aligned_cols=180 Identities=22% Similarity=0.322 Sum_probs=117.3
Q ss_pred HHHHHhhCccccccc-------ccchHHHHHHHhCCCCCCEEEEECCccCcccc----cCCC-ceEEEEeCCHHHHHHHH
Q 017080 92 HRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICV 159 (377)
Q Consensus 92 ~~~y~~~a~~y~~~~-------~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~-~~v~gvD~s~~~~~~a~ 159 (377)
++.|+.++..|+... ...|...........++.+|||+|||+|.++. ..+. .+++|+|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 345666666666421 12232222112223467899999999999753 2443 69999999999999988
Q ss_pred Hc-----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccch--hhhhc
Q 017080 160 DR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK--SLVTK 232 (377)
Q Consensus 160 ~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~ 232 (377)
++ ++++..+|+.+.++++++||+|++..+++|+++ +..+++++.+.|+|||++++.++....... .....
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~ 158 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD---IQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKF 158 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHH
Confidence 75 478899999998877889999999999999998 889999999999999999998765332110 00000
Q ss_pred cccchHHHHhhhhCCCCCCc-----CCCCCCCcccHHhHhhcCCCcc
Q 017080 233 WTPLTQKYVEEWIGPGSPRV-----RSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 233 ~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+..........++....... ....+++.+++.++|+++||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 205 (223)
T TIGR01934 159 YLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEE 205 (223)
T ss_pred HHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 00000000011111100000 0123567788999999999965
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=144.19 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=104.5
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+.++.+|||||||+|.++. ..++.+|+|+|+|+.|++.++++ ++.++.+|+..+. ++++||+|+++.+++|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP 107 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC
Confidence 4567899999999998753 36788999999999999999887 6889999998764 456999999999999999
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCc-CCCCCCCcccHHhHhhcCCC
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRV-RSPSARTLESIPETEDNGSE 272 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~l~~~l~~aGF 272 (377)
+ +..+++++.++|||||.+++..+.......... +. .-.....|........ ......+.+.+.+++..+|+
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~--~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 180 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVL--MR--EVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAAC 180 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHH--HH--HHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCC
Confidence 8 789999999999999999997543221111000 00 0000112322111111 11233456678899999998
Q ss_pred cc
Q 017080 273 EQ 274 (377)
Q Consensus 273 ~~ 274 (377)
.+
T Consensus 181 ~v 182 (258)
T PRK01683 181 RV 182 (258)
T ss_pred ce
Confidence 66
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=127.08 Aligned_cols=97 Identities=32% Similarity=0.530 Sum_probs=80.4
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeC-CCCCCCCCceeEEEecc-
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADA-VNLPYRSDFGDAAISIA- 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~-~~~~~~~~~fD~V~~~~- 187 (377)
|+.+|||||||+|.++. ..++++|+|+|+|+.+++.++++ +++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 57899999999999753 25999999999999999999876 688999999 33332 45699999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++++...+++.++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66655543447899999999999999999875
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-16 Score=139.81 Aligned_cols=127 Identities=21% Similarity=0.333 Sum_probs=99.0
Q ss_pred CEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+|||||||+|.++. ..++++|+|+|+|+.+++.++++ +++++..|+...++ .++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHHHHHh
Confidence 379999999999653 35678999999999999998875 35888899876665 458999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+++ +..++++++++|||||.+++.++.... +... ..........+.++|.++++++|
T Consensus 80 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~--------~~~~------------~~~~~~~~~~s~~~~~~~l~~~G 136 (224)
T smart00828 80 IKD---KMDLFSNISRHLKDGGHLVLADFIANL--------LSAI------------EHEETTSYLVTREEWAELLARNN 136 (224)
T ss_pred CCC---HHHHHHHHHHHcCCCCEEEEEEccccc--------Cccc------------cccccccccCCHHHHHHHHHHCC
Confidence 998 889999999999999999998764321 0000 00001122556788999999999
Q ss_pred Ccc
Q 017080 272 EEQ 274 (377)
Q Consensus 272 F~~ 274 (377)
|.+
T Consensus 137 f~~ 139 (224)
T smart00828 137 LRV 139 (224)
T ss_pred CeE
Confidence 977
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=135.27 Aligned_cols=106 Identities=25% Similarity=0.253 Sum_probs=85.2
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCcee
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD 181 (377)
+.+...+.. .++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++ ++++.+.|+.++++ +++||
T Consensus 20 ~~l~~~l~~-~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD 97 (197)
T PRK11207 20 SEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYD 97 (197)
T ss_pred HHHHHhccc-CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcC
Confidence 345555543 3567999999999997643 4577999999999999988764 46788889887766 46799
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|++..++||++..+ +..+++++.++|||||.+++..
T Consensus 98 ~I~~~~~~~~~~~~~-~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 98 FILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEEEecchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999987543 7899999999999999976654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=138.98 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=106.3
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
++.+|++|||||||.|.++.. .-+++|+|+++|++|.+.++++ ++++...|..+++ +.||.|++.+
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg 145 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG 145 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehh
Confidence 678999999999999997642 3489999999999999999885 4667777777764 4499999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+.... ...+++.++++|+|||.+++.++........ ....+...++-+ .....+...+.+..
T Consensus 146 mfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFP------gG~lPs~~~i~~~~ 211 (283)
T COG2230 146 MFEHVGKEN-YDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFP------GGELPSISEILELA 211 (283)
T ss_pred hHHHhCccc-HHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCC------CCcCCCHHHHHHHH
Confidence 999998755 8999999999999999999998775542211 122222222221 13344567788889
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||.+
T Consensus 212 ~~~~~~v 218 (283)
T COG2230 212 SEAGFVV 218 (283)
T ss_pred HhcCcEE
Confidence 9999977
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-16 Score=141.84 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=107.4
Q ss_pred ccchHHHHHHHhCCCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHH---c---CCe--EEEeeCCCCCC
Q 017080 107 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVD---R---GHE--VLVADAVNLPY 175 (377)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~---~---~~~--~~~~d~~~~~~ 175 (377)
..+|.++...+..+ .|++|||||||+|.++- ...++ .|+|+|+++...-.... - ... ++...++++|.
T Consensus 101 d~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 101 DWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred cchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 34667777777655 58899999999999862 24444 79999999976544332 1 122 22246677776
Q ss_pred CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCC
Q 017080 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSP 255 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 255 (377)
.+.||+|+|.+||.|..+ |...|++++..|+|||.+++.+...+.+....+- ...-+..+.+.|+
T Consensus 180 -~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~-P~~rYa~m~nv~F---------- 244 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV-PEDRYAKMRNVWF---------- 244 (315)
T ss_pred -cCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc-cCCcccCCCceEE----------
Confidence 789999999999999999 9999999999999999999998765544322111 0011222222233
Q ss_pred CCCCcccHHhHhhcCCCcc
Q 017080 256 SARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 256 ~~~~~~~l~~~l~~aGF~~ 274 (377)
..+...+..||+++||++
T Consensus 245 -iPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 245 -IPSVAALKNWLERAGFKD 262 (315)
T ss_pred -eCCHHHHHHHHHHcCCce
Confidence 246788999999999976
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-16 Score=145.98 Aligned_cols=143 Identities=21% Similarity=0.336 Sum_probs=92.6
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+++|.+|||||||.|.++.. ..+++|+|+.+|+.+.+.++++ .+.+...|..+++ .+||.|++.+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~ 135 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIE 135 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEe
Confidence 478999999999999997642 2389999999999999999876 3678888887764 3999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+.... ...+++++.++|||||.+++..+............. ...++...+-| .....+..++...+
T Consensus 136 ~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~---~~~~i~kyiFP------gg~lps~~~~~~~~ 205 (273)
T PF02353_consen 136 MFEHVGRKN-YPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRS---SSDFIRKYIFP------GGYLPSLSEILRAA 205 (273)
T ss_dssp EGGGTCGGG-HHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTC---CCHHHHHHTST------TS---BHHHHHHHH
T ss_pred chhhcChhH-HHHHHHHHHHhcCCCcEEEEEecccccccchhhcCC---CceEEEEeeCC------CCCCCCHHHHHHHH
Confidence 999996544 789999999999999999998776543322110000 00222222211 12344567788888
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 206 ~~~~l~v 212 (273)
T PF02353_consen 206 EDAGLEV 212 (273)
T ss_dssp HHTT-EE
T ss_pred hcCCEEE
Confidence 9999966
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=138.93 Aligned_cols=131 Identities=23% Similarity=0.310 Sum_probs=103.4
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.+.+|||+|||+|.++. ..+..+++|+|+|+.+++.++++ ++.++.+|+.+.++++++||+|++..+++|+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 45799999999998653 36777899999999999998876 478999999999888899999999999999998
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+..++.++.++|||||.+++.++...... . ....+.. ....+.+.+.+.+++..+ |..
T Consensus 114 ---~~~~l~~~~~~L~~~G~l~~~~~~~~~~~-~-----------~~~~~~~------~~~~~~~~~~~~~~l~~~-f~~ 171 (240)
T TIGR02072 114 ---LSQALSELARVLKPGGLLAFSTFGPGTLH-E-----------LRQSFGQ------HGLRYLSLDELKALLKNS-FEL 171 (240)
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeCCccCHH-H-----------HHHHHHH------hccCCCCHHHHHHHHHHh-cCC
Confidence 88999999999999999999977543210 0 0000100 123456778888999888 855
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-16 Score=133.10 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=114.3
Q ss_pred ccccchHHHHHHHhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCC
Q 017080 105 TRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSD 178 (377)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~ 178 (377)
.|.+.-+++...+. +.+..+|.|+|||+|..+ +..|++.++|+|-|+.|++.|+++ +++|..+|+.++. ++.
T Consensus 14 eRtRPa~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~ 91 (257)
T COG4106 14 ERTRPARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQ 91 (257)
T ss_pred hccCcHHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCC
Confidence 34444445544443 345679999999999854 459999999999999999999888 7899999999974 567
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCC-CcCCCCC
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSP-RVRSPSA 257 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~ 257 (377)
++|+++++.+++++++ -.++|.++...|.|||++.+..+....+.......-..... .|-..... ...-...
T Consensus 92 ~~dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~----p~~~~l~~~~~~r~~v 164 (257)
T COG4106 92 PTDLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA----PFAQELGGRGLTRAPL 164 (257)
T ss_pred ccchhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcC----chhhhhCccccccCCC
Confidence 8999999999999999 78999999999999999999987654433222111000000 11111111 1112445
Q ss_pred CCcccHHhHhhcCCCcc
Q 017080 258 RTLESIPETEDNGSEEQ 274 (377)
Q Consensus 258 ~~~~~l~~~l~~aGF~~ 274 (377)
.++..+-++|...+-++
T Consensus 165 ~s~a~Yy~lLa~~~~rv 181 (257)
T COG4106 165 PSPAAYYELLAPLACRV 181 (257)
T ss_pred CCHHHHHHHhCccccee
Confidence 56677778887777655
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=136.35 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=102.0
Q ss_pred HHHHHhC-CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCcee
Q 017080 113 VATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 113 ~~~~l~~-~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD 181 (377)
+...+.. ..++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++.+.++|+..++ ++||
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD 121 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFD 121 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcC
Confidence 4444443 45688999999999997643 3466999999999999998875 4678889988765 7899
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcc
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLE 261 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 261 (377)
+|++..+++|++... +..+++++.+++++++.+.+.... ... ... ......+.. .........++.+
T Consensus 122 ~ii~~~~l~~~~~~~-~~~~l~~i~~~~~~~~~i~~~~~~---~~~-------~~~-~~~~~~~~~-~~~~~~~~~~~~~ 188 (219)
T TIGR02021 122 IVVCMDVLIHYPASD-MAKALGHLASLTKERVIFTFAPKT---AWL-------AFL-KMIGELFPG-SSRATSAYLHPMT 188 (219)
T ss_pred EEEEhhHHHhCCHHH-HHHHHHHHHHHhCCCEEEEECCCc---hHH-------HHH-HHHHhhCcC-cccccceEEecHH
Confidence 999999999987644 788999999999877655543211 100 000 111111111 1112224456889
Q ss_pred cHHhHhhcCCCcc
Q 017080 262 SIPETEDNGSEEQ 274 (377)
Q Consensus 262 ~l~~~l~~aGF~~ 274 (377)
++.++++++||.+
T Consensus 189 ~~~~~l~~~Gf~v 201 (219)
T TIGR02021 189 DLERALGELGWKI 201 (219)
T ss_pred HHHHHHHHcCcee
Confidence 9999999999977
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=133.95 Aligned_cols=149 Identities=22% Similarity=0.339 Sum_probs=102.3
Q ss_pred HHHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C-CCCCCceeEEEeccch
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIAVL 189 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~-~~~~~~fD~V~~~~~l 189 (377)
.....++++.+|||||||+|.++.. ..+..++|+|+|+.+++.+++++++++++|+.+ + ++++++||+|++..++
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 3334456788999999999997642 345688999999999999988889999999976 4 3678899999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh--hh-hccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS--LV-TKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
+|+++ +..+|+++.|++++ +++..++....... .. ....+....+...|+ ...+..+++.+++.++
T Consensus 86 ~~~~d---~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 86 QATRN---PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWY-----NTPNIHFCTIADFEDL 154 (194)
T ss_pred HcCcC---HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCcccc-----CCCCcccCcHHHHHHH
Confidence 99999 88999999887654 44444332110000 00 000000000000111 1112457889999999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
++++||++
T Consensus 155 l~~~Gf~v 162 (194)
T TIGR02081 155 CGELNLRI 162 (194)
T ss_pred HHHCCCEE
Confidence 99999966
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=131.64 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=87.4
Q ss_pred HHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..+..++++.+|||||||+|.++. ..++.+++|+|+|+.|++.|+++ ++.+.++|+.+ ++++++||+|++..+
T Consensus 36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 344456778899999999999753 24678999999999999999885 67889999988 888999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++|++. ++..++++++.|++ ++.++|.++..
T Consensus 115 L~hl~p-~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 115 LIHINP-DNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hhhCCH-HHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 999974 34889999999998 56888877643
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=130.34 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=96.3
Q ss_pred HHHHHHHhhCcccccccccchHHHHHHHhCC--CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----
Q 017080 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---- 161 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---- 161 (377)
++.+.|......|+.. ...+.+..++..+ +++.+|||+|||.|..+.. ..|.+|+|+|+|+.+++.+.+.
T Consensus 2 ~Wd~ry~~~~~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 2 FWHERWQEGQIGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred hHHHHHhcCCCCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCC
Confidence 3556665544444321 2223344444433 5778999999999997643 5788999999999999986331
Q ss_pred ---------------CCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 ---------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 ---------------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+++++++|+.+++.. .+.||.|+...+++|++.+. +..+++.+.++|||||.+++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEM-RQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHH-HHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 467899999887632 46799999999999998655 7899999999999999988876643
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=129.38 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=83.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEE
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+...+... ++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++ .+.+...|+...++ +++||+|
T Consensus 21 ~l~~~~~~~-~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I 98 (195)
T TIGR00477 21 AVREAVKTV-APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFI 98 (195)
T ss_pred HHHHHhccC-CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEE
Confidence 444444433 456999999999997642 4578999999999999987654 35567777766655 4679999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++..+++|++... ...++++++++|||||++++.++.
T Consensus 99 ~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 99 FSTVVFMFLQAGR-VPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred EEecccccCCHHH-HHHHHHHHHHHhCCCcEEEEEEec
Confidence 9999999997543 789999999999999997776653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-15 Score=120.39 Aligned_cols=87 Identities=31% Similarity=0.591 Sum_probs=71.6
Q ss_pred EEEECCccCccccc-------CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEec-cchhh
Q 017080 126 VLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLHH 191 (377)
Q Consensus 126 vLDiGcG~G~~~~~-------~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~-~~l~h 191 (377)
|||+|||+|..+.. .+..+++|+|+|+.|++.++++ .++++++|+.++++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79999999996532 2448999999999999999887 5799999999998888999999995 55999
Q ss_pred cCChHHHHHHHHHHHHccccCc
Q 017080 192 LSTESRRKKAIEELVRVVKKGS 213 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG 213 (377)
+.+++ ..++++++.++|||||
T Consensus 81 ~~~~~-~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-HHHHHHHHHHTEEEEE
T ss_pred CCHHH-HHHHHHHHHHHhCCCC
Confidence 87755 8999999999999998
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-16 Score=121.40 Aligned_cols=86 Identities=34% Similarity=0.588 Sum_probs=55.7
Q ss_pred EEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----C--CeEEEeeCCCCC--CCCCceeEEEeccchhhcC
Q 017080 127 LDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP--YRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 127 LDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----~--~~~~~~d~~~~~--~~~~~fD~V~~~~~l~h~~ 193 (377)
||||||+|.++.. .+..+++|+|+|+.|++.++++ . ......+..+.. ...++||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999998753 6889999999999999777665 1 223333333322 1235999999999999997
Q ss_pred ChHHHHHHHHHHHHccccCcEE
Q 017080 194 TESRRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l 215 (377)
+ +..++++++++|||||+|
T Consensus 81 ~---~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D---IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----HHHHHHHHTTT-TSS-EE
T ss_pred h---HHHHHHHHHHHcCCCCCC
Confidence 7 899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=126.11 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhhCcccccccccchHHHHHHH---hCCCCCCEEEEECCccCccccc-CCC-ceEEEEeCCHHHHHHHHHc
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFL---NSLPSGSLVLDAGCGNGKYLGL-NPD-CFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l---~~~~~~~~vLDiGcG~G~~~~~-~~~-~~v~gvD~s~~~~~~a~~~ 161 (377)
..+++++.++...|+=-.++....++....+ ..-+.-.++||+|||+|.++.. .+. -+++++|+|+.+++.|+++
T Consensus 5 ~~~~l~~~la~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~R 84 (201)
T PF05401_consen 5 NYQLLNRELANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARER 84 (201)
T ss_dssp HHHHHHHHHTSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHh
Confidence 4567777777766653222322222222222 2223347999999999999764 333 4899999999999999987
Q ss_pred -----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 162 -----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 162 -----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++++.+.|+... .|+++||+|+++.+++++.+.++...+++.+...|+|||.+++..+.
T Consensus 85 l~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 85 LAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp TTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 689999999775 46899999999999999988655889999999999999999998763
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=136.00 Aligned_cols=177 Identities=19% Similarity=0.223 Sum_probs=108.9
Q ss_pred CChhhhHHHHHHHHHhhC-----ccccccc-------ccch------HHHHHHHhCC--CCCCEEEEECCccCccccc--
Q 017080 82 STPELEKKYVHRVYDAIA-----PHFSSTR-------FAKW------PKVATFLNSL--PSGSLVLDAGCGNGKYLGL-- 139 (377)
Q Consensus 82 ~~~~~~~~~~~~~y~~~a-----~~y~~~~-------~~~~------~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~-- 139 (377)
.....+++.+.++|++++ ..|+... ...| +.+...+... .++.+|||||||+|.++..
T Consensus 84 ~~~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la 163 (315)
T PLN02585 84 EVGGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLA 163 (315)
T ss_pred hhHHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHH
Confidence 334567788888888753 3344310 1111 2334444322 2578999999999997542
Q ss_pred CCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHH
Q 017080 140 NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVR 207 (377)
Q Consensus 140 ~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r 207 (377)
..+.+|+|+|+|+.|++.++++ ++.|...|++.+ +++||+|+|..+++|++++. ...+++.+.+
T Consensus 164 ~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~-~~~ll~~l~~ 239 (315)
T PLN02585 164 LEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDK-ADGMIAHLAS 239 (315)
T ss_pred HCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHH-HHHHHHHHHh
Confidence 3467999999999999998876 145677776554 57899999999999998754 4567777775
Q ss_pred ccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 208 VVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 208 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+.+||. +|.. ......... .....+.|..+ .......+++.+++.++++++||++
T Consensus 240 -l~~g~l-iIs~-~p~~~~~~~-------l~~~g~~~~g~--~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 240 -LAEKRL-IISF-APKTLYYDI-------LKRIGELFPGP--SKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred -hcCCEE-EEEe-CCcchHHHH-------HHHHHhhcCCC--CcCceeeeCCHHHHHHHHHHCCCEE
Confidence 455554 4443 211111111 01111111111 1111122457899999999999976
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-14 Score=134.10 Aligned_cols=144 Identities=13% Similarity=0.160 Sum_probs=101.5
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++ ..+|+.+++++|+ +.+++.++++ +++++.+|+.+.+++. +|+|++.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence 3567789999999999975 3478899999997 7888888764 4788999998765543 6999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
.++|+..++. ...+|++++++|||||+++|.++.......... . ++........-........+.+++.++
T Consensus 223 ~~lh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~e~~~l 293 (306)
T TIGR02716 223 RILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVIDDPENPNF-------D-YLSHYILGAGMPFSVLGFKEQARYKEI 293 (306)
T ss_pred hhhhcCChHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCchh-------h-HHHHHHHHcccccccccCCCHHHHHHH
Confidence 9999887643 578999999999999999999875432211100 0 111111100000111223446899999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
|+++||+.
T Consensus 294 l~~aGf~~ 301 (306)
T TIGR02716 294 LESLGYKD 301 (306)
T ss_pred HHHcCCCe
Confidence 99999965
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=135.16 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=82.7
Q ss_pred CCCCEEEEECCccCcc--------cccC-----CCceEEEEeCCHHHHHHHHHc--------------------------
Q 017080 121 PSGSLVLDAGCGNGKY--------LGLN-----PDCFFVGCDISPSLIKICVDR-------------------------- 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~--------~~~~-----~~~~v~gvD~s~~~~~~a~~~-------------------------- 161 (377)
.++.+|+|+|||||.- .... ++.+|+|+|+|+.|++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999961 1222 357999999999999999873
Q ss_pred --------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 162 --------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++.|.+.|+.+.+++.++||+|+|.++++|++++. ..+++++++++|+|||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-HHHHHHHHHHHhCCCeEEEEEC
Confidence 47889999999877789999999999999997644 6799999999999999999874
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-14 Score=132.91 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=83.8
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
+...+..++ +.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++...|+...++ +++||+|+
T Consensus 112 ~~~~~~~~~-~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 112 VLEAVQTVK-PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred HHHHhhccC-CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEE
Confidence 444443344 45999999999997642 4578999999999999988765 46677888877655 77899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+..+++|++.+. ...+++++.++|+|||++++..+
T Consensus 190 ~~~vl~~l~~~~-~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 190 STVVLMFLNRER-IPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EcchhhhCCHHH-HHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999987543 78999999999999999777654
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-14 Score=123.77 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=89.6
Q ss_pred EEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEE
Q 017080 146 VGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 146 ~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l 215 (377)
+|+|+|+.|++.|+++ +++++++|++++|+++++||+|++..+++|+++ +..++++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 5899999999999653 378999999999999999999999999999998 899999999999999999
Q ss_pred EEEEcCCCccchh-hhhccccchHHHHhhhhCCCCCCcCC-----CCCCCcccHHhHhhcCCCcc
Q 017080 216 LITVWAVEQEDKS-LVTKWTPLTQKYVEEWIGPGSPRVRS-----PSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 216 ~i~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~l~~~l~~aGF~~ 274 (377)
++.++........ ....|..........+.......... ..+.+.+++.++|+++||+.
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~ 142 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSS 142 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCc
Confidence 9999875432111 01111100000000111111111111 35678899999999999965
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-14 Score=127.28 Aligned_cols=145 Identities=16% Similarity=0.176 Sum_probs=102.9
Q ss_pred CCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC-CCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR-SDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h 191 (377)
.+.+|||+|||+|.++.. ..+..++|+|+|+.+++.++.+ ++++...|+.+++.. .++||+|++..+++|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 477999999999997532 3456799999999999888774 367777888776543 378999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+.+ +..+++++.++|+|||.+++.+++.... ..... .....+...|... .......+++.+++.++++++|
T Consensus 125 ~~~---~~~~l~~~~~~L~~gG~l~i~~~~~~~~--~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 125 VPD---PQAFIRACAQLLKPGGILFFSTINRTPK--SYLLA--IVGAEYILRIVPK--GTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEecCCCch--HHHHH--HHhhhhhhhcCCC--CcCChhhcCCHHHHHHHHHHcC
Confidence 999 8899999999999999999987653211 00000 0001111112111 1112234667888999999999
Q ss_pred Cccc
Q 017080 272 EEQG 275 (377)
Q Consensus 272 F~~~ 275 (377)
|++.
T Consensus 196 ~~i~ 199 (224)
T TIGR01983 196 LRVK 199 (224)
T ss_pred Ceee
Confidence 9883
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=123.98 Aligned_cols=131 Identities=19% Similarity=0.247 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhhCcccccccccchHHHHHHHh--CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHH-c
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD-R 161 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~--~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~-~ 161 (377)
+.+.+.+.|+.-...|... ...+.+..++. .++++.+|||+|||.|..+.. ..|.+|+|+|+|+.+++.+.. +
T Consensus 2 ~~~~Wd~rw~~~~~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~ 79 (218)
T PRK13255 2 DPDFWHEKWAENQIGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAEN 79 (218)
T ss_pred CHhHHHHHHcCCCCCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHc
Confidence 3456777786654444322 23334444443 235678999999999996642 578899999999999998643 1
Q ss_pred ------------------CCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 162 ------------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 162 ------------------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+++.++|+.+++.. .+.||+|+...+++|++.+. +..+++.+.++|+|||.+++.+.
T Consensus 80 ~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 80 GLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-RERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred CCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-HHHHHHHHHHHcCCCCeEEEEEE
Confidence 356789999887533 36899999999999998655 78999999999999997666543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=136.39 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=84.6
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+.++.+|||||||+|.++.. ..+++|+|+|+|+.|++.|+++ ++++...|...+ +++||.|++..+++|
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 357889999999999997642 4578999999999999999886 356677777654 578999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+.... +..+++++.++|||||.+++.++...
T Consensus 241 vg~~~-~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 241 VGPKN-YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CChHH-HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 97644 68999999999999999999876543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-14 Score=140.56 Aligned_cols=104 Identities=26% Similarity=0.399 Sum_probs=86.8
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--~~~~~fD~V~~~ 186 (377)
...++.+|||||||+|.++. ..|+.+|+|+|+|+.|++.|+++ ++.++++|+.+++ +++++||+|+++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 34467899999999998642 37889999999999999999875 3567889998877 778999999999
Q ss_pred cchhhcCC----------hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AVLHHLST----------ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l~h~~~----------~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.++||+.+ .+++.++|++++++|||||.+++.+...
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 99997631 2337899999999999999999987543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.9e-14 Score=139.75 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=100.3
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCC--CCCCCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAV--NLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~--~~~~~~~~fD~V~~~~~l~h 191 (377)
.++.+|||||||+|.++.. ....+|+|+|+|+.|++.++.. ++.++++|+. .+++++++||+|++..+++|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 3567999999999997643 2346999999999999887653 5788999996 35677899999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+++++ +..+++++.++|||||++++.+........ + ........+.....|.+++.++|
T Consensus 116 l~~~~-~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 116 LSDKE-VENLAERMVKWLKVGGYIFFRESCFHQSGD----------------S----KRKNNPTHYREPRFYTKVFKECH 174 (475)
T ss_pred CCHHH-HHHHHHHHHHhcCCCeEEEEEeccCCCCCc----------------c----cccCCCCeecChHHHHHHHHHhe
Confidence 98854 689999999999999999998754321100 0 00111122234567888999999
Q ss_pred Ccc
Q 017080 272 EEQ 274 (377)
Q Consensus 272 F~~ 274 (377)
|..
T Consensus 175 ~~~ 177 (475)
T PLN02336 175 TRD 177 (475)
T ss_pred ecc
Confidence 966
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=124.37 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=104.1
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-CCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-YRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 190 (377)
..++.+|||||||+|.++.. ..+..++++|+++.+++.++++ .+.+...|+...+ ..+++||+|++..+++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 45678999999999997532 3467899999999999988865 3567777776654 3457999999999999
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
|+++ +..+|+.+.++|+|||.+++..+........ ... ....+...+... ....+..+++.+++.++++.+
T Consensus 126 ~~~~---~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~-~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 196 (233)
T PRK05134 126 HVPD---PASFVRACAKLVKPGGLVFFSTLNRNLKSYL-LAI---VGAEYVLRMLPK--GTHDYKKFIKPSELAAWLRQA 196 (233)
T ss_pred ccCC---HHHHHHHHHHHcCCCcEEEEEecCCChHHHH-HHH---hhHHHHhhhcCc--ccCchhhcCCHHHHHHHHHHC
Confidence 9999 7899999999999999999987653211000 000 001111112211 112234577888999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 197 Gf~~ 200 (233)
T PRK05134 197 GLEV 200 (233)
T ss_pred CCeE
Confidence 9966
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-14 Score=130.49 Aligned_cols=91 Identities=35% Similarity=0.469 Sum_probs=75.7
Q ss_pred CCCEEEEECCccCccccc----CC---CceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 122 SGSLVLDAGCGNGKYLGL----NP---DCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~~---~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
++.+|||+|||+|.++.. .+ +..++|+|+|+.|++.|+++ ++.+.++|+.++|+++++||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 457899999999997532 22 34899999999999999876 688999999999999999999998653
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+ ..++++.|+|||||.+++..+..
T Consensus 161 ~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24688999999999999987654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=120.87 Aligned_cols=96 Identities=22% Similarity=0.154 Sum_probs=80.8
Q ss_pred hCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
..++++.+|||+|||+|..+. ..++++|+|+|+|+.|++.++++ +++++.+|+.+++. .++||+|++.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence 345668999999999998542 36888999999999999998875 47899999998776 7799999997
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. +.+ +..++++++++|||||.+++....
T Consensus 120 ~----~~~---~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 120 A----VAS---LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred c----ccC---HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 5 345 789999999999999999988643
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=121.32 Aligned_cols=181 Identities=21% Similarity=0.215 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhhCcccccccccchHHHHHHHhCC-CCCCEEEEECCccCccc----cc--CCCceEEEEeCCHHHHHHHH
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGKYL----GL--NPDCFFVGCDISPSLIKICV 159 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~----~~--~~~~~v~gvD~s~~~~~~a~ 159 (377)
.+.++..+|...-..|-..|....++.-.++... .+..+|||||||.|... +. .++..|.++|.||.+++..+
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 3557777777666666555554444444444321 12238999999999843 33 34489999999999999998
Q ss_pred Hc------CCeEEEeeCCC----CCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhh
Q 017080 160 DR------GHEVLVADAVN----LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229 (377)
Q Consensus 160 ~~------~~~~~~~d~~~----~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 229 (377)
++ .+...+.|+.. -+...+++|+|++.++|..++.+. ...++.+++++|||||.+++.++....-....
T Consensus 115 ~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR 193 (264)
T KOG2361|consen 115 KSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR 193 (264)
T ss_pred hccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence 87 34555556654 245678999999999999998755 89999999999999999999988754321110
Q ss_pred hhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 230 VTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 230 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.....-+. ...+.. ...-..-+|+.+++.+++.+|||..
T Consensus 194 F~~~~~i~----~nfYVR--gDGT~~YfF~~eeL~~~f~~agf~~ 232 (264)
T KOG2361|consen 194 FKKGQCIS----ENFYVR--GDGTRAYFFTEEELDELFTKAGFEE 232 (264)
T ss_pred ccCCceee----cceEEc--cCCceeeeccHHHHHHHHHhcccch
Confidence 00000000 000000 0111134889999999999999955
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=123.71 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=92.8
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
..++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ ++.+..+|+ +..+++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchh
Confidence 45678999999999997642 3456799999999999999875 367777774 3346889999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
+|++++. ...+++++.+.+++++.+.+ ..... .... . .....++.. .........++.+++.+++++
T Consensus 138 ~~~~~~~-~~~~l~~l~~~~~~~~~i~~--~~~~~-~~~~-------~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 204 (230)
T PRK07580 138 IHYPQED-AARMLAHLASLTRGSLIFTF--APYTP-LLAL-------L-HWIGGLFPG-PSRTTRIYPHREKGIRRALAA 204 (230)
T ss_pred hcCCHHH-HHHHHHHHHhhcCCeEEEEE--CCccH-HHHH-------H-HHhccccCC-ccCCCCccccCHHHHHHHHHH
Confidence 9988754 77899999987754443322 11110 0000 0 111111111 111122345677889999999
Q ss_pred CCCcc
Q 017080 270 GSEEQ 274 (377)
Q Consensus 270 aGF~~ 274 (377)
+||++
T Consensus 205 ~Gf~~ 209 (230)
T PRK07580 205 AGFKV 209 (230)
T ss_pred CCCce
Confidence 99976
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-14 Score=125.15 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhCcccccc-----cccchHHHHHHHhCCCCC--CEEEEECCccCccccc--CCCceEEEEeCCHHHHHHH
Q 017080 88 KKYVHRVYDAIAPHFSST-----RFAKWPKVATFLNSLPSG--SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKIC 158 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~-----~~~~~~~~~~~l~~~~~~--~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a 158 (377)
..|+..+||..+..|+.. -+.....+.+.+.....| .++||+|||||..... ..-.+.+|+|||.+|+++|
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA 163 (287)
T COG4976 84 SAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKA 163 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHH
Confidence 478999999999998862 233334555666555444 7999999999998654 2334899999999999999
Q ss_pred HHcCC--eEEEeeCCCC-C-CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc
Q 017080 159 VDRGH--EVLVADAVNL-P-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234 (377)
Q Consensus 159 ~~~~~--~~~~~d~~~~-~-~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 234 (377)
.++++ ...++++..+ + ..+..||+|++..|+.++-+ ++.++.-+...|+|||.+.++.-....... +.
T Consensus 164 ~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~---- 235 (287)
T COG4976 164 HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FV---- 235 (287)
T ss_pred HhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCC-ee----
Confidence 99953 3344555432 2 44678999999999999999 899999999999999999998644332210 00
Q ss_pred cchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 235 PLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 235 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.. +. .+--.+...++++++..||++
T Consensus 236 ----------l~---ps--~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 236 ----------LG---PS--QRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred ----------cc---hh--hhhccchHHHHHHHHhcCceE
Confidence 00 00 011233456889999999987
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=118.29 Aligned_cols=107 Identities=25% Similarity=0.307 Sum_probs=82.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEE
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+...+..++ +.++||+|||.|+.+.. ..|..|+++|+|+..++.+.+. .++..+.|+.+..++ +.||+|
T Consensus 21 ~v~~a~~~~~-~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 21 EVLEAVPLLK-PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHHHhhcC-CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 4555555554 56999999999997653 6788999999999998776543 467788999887764 689999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++..+++|++.+. ...+++.+...++|||++++.++.
T Consensus 99 ~st~v~~fL~~~~-~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 99 VSTVVFMFLQREL-RPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEESSGGGS-GGG-HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEeccCCHHH-HHHHHHHHHhhcCCcEEEEEEEec
Confidence 9999999998755 789999999999999999987654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=113.36 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=73.9
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
++.+|||+|||+|.++. ..+..+|+|+|+|+.|++.++++ +++++.+|+.+++ .+++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 47899999999998542 36778999999999999887654 4788999998864 367999999976 3
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+ ...+++.+.++|+|||.+++..
T Consensus 119 --~~---~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 --AS---LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred --hC---HHHHHHHHHHhcCCCCEEEEEc
Confidence 34 5678889999999999999874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=113.72 Aligned_cols=99 Identities=28% Similarity=0.551 Sum_probs=81.9
Q ss_pred CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCC--eEEEeeCCC-CCCCCCceeEEEeccchhhcCCh--
Q 017080 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGH--EVLVADAVN-LPYRSDFGDAAISIAVLHHLSTE-- 195 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~d~~~-~~~~~~~fD~V~~~~~l~h~~~~-- 195 (377)
+.-|||||||+|.-... .++...+|+|+|+.|++.|.+..+ .++.+|+-. +||+.++||.+|+..+++|+=+.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~ 130 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADK 130 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCc
Confidence 67999999999997653 677899999999999999987633 577788865 89999999999999888776321
Q ss_pred ------HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 196 ------SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 196 ------~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++..++..++.+|++|+..++..+.
T Consensus 131 s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 131 SLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred cccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 22567889999999999999998754
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-13 Score=119.17 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=78.7
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeC-CCCC--CCCCceeEEEecc
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADA-VNLP--YRSDFGDAAISIA 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~-~~~~--~~~~~fD~V~~~~ 187 (377)
++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++ ++.++++|+ +.++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999998643 36778999999999999998864 578999999 6665 6788999999976
Q ss_pred chhhcCChH-----HHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+..... ....+++++.++|||||.+++...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 543322100 036799999999999999999864
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=103.81 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~-~~~~~~~fD~V~~~~ 187 (377)
+.++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++ ++.++..|+.. ++...++||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 4567899999999999753 35678999999999999998765 46777777765 333346899999976
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..++ ..++++++.+.|||||.+++...
T Consensus 97 ~~~~------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 97 SGGL------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cchh------HHHHHHHHHHHcCCCCEEEEEec
Confidence 5432 46899999999999999998753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=112.56 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=77.2
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
.++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++.+|+.+.+ .++||+|+++..+++.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 3457899999999997632 2233899999999999998886 4667888876643 4689999999888776
Q ss_pred CChH------------------HHHHHHHHHHHccccCcEEEEEEcC
Q 017080 193 STES------------------RRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 193 ~~~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++.. ...++++++.++|||||.+++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 5421 1357899999999999999998644
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=117.18 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=82.3
Q ss_pred chHHHHHHHhCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------C
Q 017080 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------Y 175 (377)
Q Consensus 109 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~ 175 (377)
.+.++......++++.+|||||||+|.++.. .+...|+|+|+++ |. ...++.++++|+.+.+ +
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~---~~~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD---PIVGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc---CCCCcEEEecCCCChHHHHHHHHHh
Confidence 3344444444467889999999999997532 3567999999998 21 1236899999999853 5
Q ss_pred CCCceeEEEeccchhhcCChH--------HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 176 RSDFGDAAISIAVLHHLSTES--------RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~~--------~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.+++||+|++..+.++..+.. ....+|+++.++|||||.+++.++...
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 678999999987766654311 014689999999999999999887643
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=116.06 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=71.9
Q ss_pred hCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCC----CCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNL----PYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~----~~~~~~fD~V~ 184 (377)
..+.++.+|||+|||+|.++. ..+...|+|+|+++.|++.+.++ ++.++.+|+... ++ .++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 356789999999999999653 23456999999999988754332 688899998752 22 35699998
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+. +.++.....+++++.++|||||.++|...
T Consensus 147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred EC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 54 33322234679999999999999999643
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.4e-12 Score=112.54 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHhhCcccccccccchHHHHHHHhC--CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHH
Q 017080 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 85 ~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~ 160 (377)
..+.+.+.+.|+.-...|+.... .+.+...+.. +.++.+||+.|||.|.-+.. ..|.+|+|+|+|+.+++.+.+
T Consensus 6 ~~~~~fW~~rw~~~~~~f~~~~p--np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 6 TNNNQYWLDRWQNDDVGFCQESP--NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred cCCHHHHHHHHhcCCCCCccCCC--CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH
Confidence 34567888888876666654332 2333333332 34568999999999996542 568899999999999999755
Q ss_pred c-------------------CCeEEEeeCCCCCCC---CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 161 R-------------------GHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 161 ~-------------------~~~~~~~d~~~~~~~---~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
. +++++++|+.+++.. .+.||+|+-..++.+++.+. +.+..+.+.++|+|||.+++.
T Consensus 84 e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~-R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 84 QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDL-RTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred HcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHH-HHHHHHHHHHHhCCCcEEEEE
Confidence 1 578999999998632 26899999999999998755 899999999999999999988
Q ss_pred EcC
Q 017080 219 VWA 221 (377)
Q Consensus 219 ~~~ 221 (377)
++.
T Consensus 163 ~~~ 165 (226)
T PRK13256 163 VME 165 (226)
T ss_pred EEe
Confidence 764
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=114.48 Aligned_cols=161 Identities=22% Similarity=0.292 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHhhCcccccccccchHHHHHHHhC--CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc
Q 017080 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
|+.+++++.|.+-...|+..... +.+..++.. .+++.+||..|||.|.-+.. ..|.+|+|+|+|+.+++.+.+.
T Consensus 1 m~~~~W~~~w~~~~~~w~~~~~~--p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 1 MDPEFWEERWQEGQTPWDQGEPN--PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp -HHHHHHHHHHTT--TT--TTST--HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHH
Confidence 46788898998776666643322 334444433 56778999999999985432 4588999999999999998432
Q ss_pred -------------------CCeEEEeeCCCCCCCC-CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 162 -------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 162 -------------------~~~~~~~d~~~~~~~~-~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++++++|+.+++... ++||+|+-...+..++.+. +.+..+.+.++|+|||.+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 79 NNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-RERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp CTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-HHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred hccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-HHHHHHHHHHHhCCCCcEEEEEEE
Confidence 2478899999976433 5899999999999998765 899999999999999996665543
Q ss_pred CCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 222 VEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
..... ..++....+.+++.+++. .+|++
T Consensus 158 ~~~~~------------------------~~GPPf~v~~~ev~~l~~-~~f~i 185 (218)
T PF05724_consen 158 YPQGE------------------------MEGPPFSVTEEEVRELFG-PGFEI 185 (218)
T ss_dssp S-CSC------------------------SSSSS----HHHHHHHHT-TTEEE
T ss_pred cCCcC------------------------CCCcCCCCCHHHHHHHhc-CCcEE
Confidence 22110 011122345678888888 88876
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=119.35 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=80.6
Q ss_pred CCCEEEEECCccCccc------ccCCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~------~~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
++.+|+|||||.|-++ ...|+.+++|+|+++.+++.|++. +++|.++|+.+.+...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999988432 247889999999999999998874 4899999998864335789999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++++..++ +.++++++++.|+|||.+++..
T Consensus 203 -ALi~~dk~~-k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEE-KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -ccccccccc-HHHHHHHHHHhcCCCcEEEEec
Confidence 888884322 8999999999999999999975
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=110.77 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+|||+|.++. ..+..+|+++|+|+.+++.++++ +++++.+|+.. ++ .++||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECC
Confidence 45678899999999999753 36778999999999999998765 46777777642 33 46899999987
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..++ ...+++++.++|+|||.+++...
T Consensus 106 ~~~~------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 106 SGGN------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CccC------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 6543 45789999999999999988654
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-12 Score=113.85 Aligned_cols=99 Identities=23% Similarity=0.369 Sum_probs=77.8
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCceeEEEecc
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIA 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~~~~~fD~V~~~~ 187 (377)
...+|||||||+|.++ ...|+..++|+|+|+.+++.|+++ +++++++|+..++ ++++++|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999975 347889999999999999988764 6789999997643 4567899999876
Q ss_pred chhhcCChHH-----HHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...|...... ...++++++++|||||.+++.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 5444322100 15799999999999999998864
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-12 Score=113.47 Aligned_cols=117 Identities=19% Similarity=0.246 Sum_probs=80.6
Q ss_pred HHHhhCcccccccccchHHHHHHHhCCCCCC-EEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-CC------
Q 017080 94 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGS-LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GH------ 163 (377)
Q Consensus 94 ~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~-~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-~~------ 163 (377)
.|....|.|. -.+...+....++. .++|+|||+|.-+.. .---+|+|+|+|+.|++.++++ ++
T Consensus 11 ~Y~~ARP~YP-------tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~ 83 (261)
T KOG3010|consen 11 DYLNARPSYP-------TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTP 83 (261)
T ss_pred HHhhcCCCCc-------HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCC
Confidence 3444455544 33344444444444 899999999954432 2234899999999999999987 22
Q ss_pred -eEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCc-EEEEEEcC
Q 017080 164 -EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWA 221 (377)
Q Consensus 164 -~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG-~l~i~~~~ 221 (377)
.+...+..++--.+++.|+|++..++|++. .++++++++|+||+.| .+.+-.++
T Consensus 84 ~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 84 STMSSDEMVDLLGGEESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ccccccccccccCCCcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 222233333333389999999999999997 4799999999998776 66665544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=111.02 Aligned_cols=91 Identities=23% Similarity=0.231 Sum_probs=73.5
Q ss_pred CCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+.++.+|||||||+|..+. . .+..+|+++|+++.+++.++++ +++++.+|+.......++||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 4677899999999999653 1 3456999999999999988875 2678889988754456799999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+++|+++ ++.+.|+|||++++..
T Consensus 150 ~~~~~~~~---------~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIPS---------ALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhhH---------HHHHhcCcCcEEEEEE
Confidence 98877652 5778999999998865
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=117.72 Aligned_cols=104 Identities=26% Similarity=0.301 Sum_probs=82.1
Q ss_pred hCCCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..++++.+|||+|||+|.++. ...+..++|+|+++.|++.++.+ ++.+..+|+.++++++++||+|++.-.
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 356788999999999999753 25678999999999999988876 357889999999888889999999632
Q ss_pred hhh---cC---ChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LHH---LS---TESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~h---~~---~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
... .. ..+....+++++.++|||||++++..+.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 211 11 1122578999999999999999887653
|
This family is found exclusively in the Archaea. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=110.17 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhhCcccccccccchHHHH-HHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVA-TFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~-~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
+++.+-+.|.... ......+..-+.++ .++.....+.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++
T Consensus 29 ~~~~v~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n 107 (279)
T PHA03411 29 EKEFCYNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL 107 (279)
T ss_pred cHHHHHHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh
Confidence 5666666665442 11112222223333 333333445799999999998743 23467999999999999999987
Q ss_pred --CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH-----------------HHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 --GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 --~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~-----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++.++++|+.++. .+++||+|+++-.++|.+..+. ..++++....+|+|+|.+.+..-..
T Consensus 108 ~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 108 LPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred CcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 6889999998865 3568999999988888654321 1356677788889999766662211
Q ss_pred CccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 223 EQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.-.+...+.++++.+|+++||..
T Consensus 187 -----------------------------~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 187 -----------------------------PYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred -----------------------------ccccccCCHHHHHHHHHhcCcEe
Confidence 01133456788999999999944
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=109.09 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=78.4
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCC
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRS 177 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~ 177 (377)
.++.+....+.++.+|||+|||+|.++. . .+..+|+|+|+|+.+ ...++.++++|+.+.+ +++
T Consensus 21 ~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 21 LQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred HHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence 3445555567889999999999999753 2 355689999999976 2236888889987643 456
Q ss_pred CceeEEEeccc--------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 178 DFGDAAISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 178 ~~fD~V~~~~~--------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++||+|++... ++|+...+....+++++.++|+|||.+++..+.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 78999998643 222222122468999999999999999997644
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=110.10 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=74.6
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++.. .+..+|+++|+++.+++.++++ +++++.+|+...+.+.++||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 457889999999999997532 3457999999999999999876 5789999988765567899999998
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..+++++ +.+.+.|||||++++..
T Consensus 153 ~~~~~~~---------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDIP---------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccch---------HHHHHhhCCCcEEEEEE
Confidence 7765443 34667899999988864
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=107.22 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=75.0
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
.+.++.+|||+|||+|.++. . .+..+|+++|+++.+++.++++ ++.++.+|+.+. +...+.||+|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 46688999999999998753 2 3567999999999999988765 356778888663 33346899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+... ..+ +..+++++.++|||||++++...
T Consensus 117 ~~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 117 IGGG---SEK---LKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ECCC---ccc---HHHHHHHHHHHcCCCcEEEEEee
Confidence 8542 234 77899999999999999987543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=103.15 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHhhCcccccccc--------cchHHHHHHHh------CCCCCC-EEEEECCccCccccc----CCCce
Q 017080 84 PELEKKYVHRVYDAIAPHFSSTRF--------AKWPKVATFLN------SLPSGS-LVLDAGCGNGKYLGL----NPDCF 144 (377)
Q Consensus 84 ~~~~~~~~~~~y~~~a~~y~~~~~--------~~~~~~~~~l~------~~~~~~-~vLDiGcG~G~~~~~----~~~~~ 144 (377)
....++|+.+.|+.....|..... ....++..++. .+.... +|||+|||+|.++.. .-...
T Consensus 14 ~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~ 93 (227)
T KOG1271|consen 14 KLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSK 93 (227)
T ss_pred ccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCC
Confidence 356788999999887777764221 11123333332 123333 999999999998642 22225
Q ss_pred EEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC-----hHHHHHHHHHHHHcccc
Q 017080 145 FVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST-----ESRRKKAIEELVRVVKK 211 (377)
Q Consensus 145 v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~-----~~~~~~~l~~~~r~Lkp 211 (377)
.+|+|.|+.+++.|+.. .++|.+.|+....+..+.||+|+-.+++..+.- ..++...+..+.+.|+|
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~ 173 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP 173 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence 99999999999887754 389999999997788899999999888776532 12245678899999999
Q ss_pred CcEEEEEEcC
Q 017080 212 GSLVLITVWA 221 (377)
Q Consensus 212 gG~l~i~~~~ 221 (377)
||+++|..-+
T Consensus 174 ~gifvItSCN 183 (227)
T KOG1271|consen 174 GGIFVITSCN 183 (227)
T ss_pred CcEEEEEecC
Confidence 9999998543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-11 Score=109.88 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHH----HHHHHHHc-CCeEEEeeCCCC---CCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNL---PYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~----~~~~a~~~-~~~~~~~d~~~~---~~~~~~fD~V~~ 185 (377)
.+.++.+|||+|||+|.++.. .+...|+++|+|+. +++.++.+ |+.++..|+... ....++||+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 357899999999999997532 34569999999986 55666553 799999998642 223468999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
... .++ +...++.++.++|||||.++|.
T Consensus 209 Dva---~pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA---QPD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC---Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence 774 233 1557778999999999999995
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-11 Score=113.75 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=77.3
Q ss_pred CCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc------C--CeEEEeeCCC-CCCCCC----ce
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------G--HEVLVADAVN-LPYRSD----FG 180 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~------~--~~~~~~d~~~-~~~~~~----~f 180 (377)
.++++.+|||+|||+|..+. ..+ +.+|+|+|+|+.|++.++++ + +.++++|+.+ ++++.. ..
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCe
Confidence 45677899999999999653 233 68999999999999888765 2 3557899876 343332 33
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++++..++++++.++ ...+|++++++|+|||.++|..-.
T Consensus 140 ~~~~~gs~~~~~~~~e-~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEE-AVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEEEecccccCCCHHH-HHHHHHHHHHhcCCCCEEEEeccC
Confidence 4555556888887544 789999999999999999987533
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-11 Score=114.15 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.+|||+|||+|.+. ...|..+|+++|+|+.+++.++++ +++++..|+... +++++||+|+|+-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 469999999999964 347889999999999999999875 246677776542 34568999999866
Q ss_pred hhhc--CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHL--STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~--~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|.. .+.+...++++++.++|+|||.+++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6543 122225689999999999999999985
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.5e-11 Score=104.02 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=74.5
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------C--CeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~--~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ + +.++.+|+.+ ++.+++||+|+++..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 5678999999999997532 2378999999999999988765 1 7788888766 3445689999987554
Q ss_pred hhcCC------------------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLST------------------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~------------------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+... ......+++++.++|||||.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 32110 11246789999999999999888753
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-11 Score=107.11 Aligned_cols=92 Identities=24% Similarity=0.282 Sum_probs=73.3
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++.. .+..+|+++|+++.+++.|+++ +++++.+|+.......++||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 357889999999999997532 3356799999999999999876 5788999987754445789999998
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....+++ ..+.+.|+|||++++..
T Consensus 154 ~~~~~~~---------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKIP---------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCccccc---------HHHHHhcCcCcEEEEEE
Confidence 7665543 34778899999998865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-11 Score=115.17 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=79.0
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC--CCCCCceeEEEeccc
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAV 188 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~--~~~~~~fD~V~~~~~ 188 (377)
.+..+||||||+|.++ ...|+..++|+|+++.+++.+.++ ++.++.+|+..+ .++++++|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4569999999999975 347899999999999998887665 688999998764 477899999998765
Q ss_pred hhhcCChHH---HHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESR---RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~---~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..|.....+ ...++++++|+|+|||.+.+.+-
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 544333110 15899999999999999999863
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=106.12 Aligned_cols=100 Identities=16% Similarity=0.079 Sum_probs=73.3
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
+.++.+|||+|||+|.++.. ....+++|+|+|+.+++.++++ ++.++.+|+... +++++||+|+++-...
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 45678999999999997532 2334999999999999988775 356777787653 4577999999974322
Q ss_pred hcCC------------------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLST------------------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~------------------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.... ......+++++.++|||||.+++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2111 01145688899999999999998654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=106.55 Aligned_cols=97 Identities=26% Similarity=0.337 Sum_probs=73.6
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch-
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL- 189 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l- 189 (377)
.+.+|||+|||+|.++. ..+...++|+|+|+.+++.++.+ ++.++.+|+.+ ++++++||+|+++-..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 34699999999999753 36778999999999999998875 37788889876 4557899999995322
Q ss_pred -----hhcCChH-----------------HHHHHHHHHHHccccCcEEEEEE
Q 017080 190 -----HHLSTES-----------------RRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 -----~h~~~~~-----------------~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++.... ....+++++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2221110 02478899999999999998864
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=111.46 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=75.9
Q ss_pred CCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
..+|||+|||+|.++. ..|..+|+++|+|+.+++.++++ + .+++..|+... ..++||+|+++-.+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 4589999999999753 36788999999999999999875 2 45666676542 36789999999888863
Q ss_pred CC--hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 193 ST--ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 193 ~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+ ......+++++.++|||||.++|...
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 22 22268999999999999999998753
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-11 Score=97.11 Aligned_cols=97 Identities=27% Similarity=0.408 Sum_probs=76.1
Q ss_pred CCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCceeEEEeccc
Q 017080 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~fD~V~~~~~ 188 (377)
|.+|||+|||+|.++. .. ..+++|+|+++..++.++.+ +++++++|+.+.. +++++||+|+++-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 5689999999999753 23 68999999999999999986 3689999998864 77899999999876
Q ss_pred hhhcCC-----hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLST-----ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~-----~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...... .+....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 653211 01146889999999999999998865
|
... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=108.69 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ + +.+...+. .+..+++||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence 35778999999999987532 3345899999999999999886 2 23333332 2334678999999865
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++ ...++.++.++|||||.++++.+.
T Consensus 235 ~~~------l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 235 AEV------IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHH------HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 432 457899999999999999998754
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-11 Score=109.85 Aligned_cols=92 Identities=23% Similarity=0.314 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
+.++.+|||+|||+|.++.. .....|+|+|+|+.+++.|+++ ++. +...++..+.+||+|+++...+.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~~- 191 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILANP- 191 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHHH-
Confidence 45788999999999986532 2223699999999999999887 231 11111222237999999754322
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
...+++++.++|||||.++++.+.
T Consensus 192 -----~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 192 -----LLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEECc
Confidence 457899999999999999998653
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=101.11 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=72.9
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~-~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||+|||+|.++. ..++.+|+++|+|+.+++.++++ +++++.+|+.+ ++.....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 45678899999999999742 35778999999999999998875 46788888764 22212345766543
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. ..+ ...+++++.++|+|||.+++..+.
T Consensus 117 ~----~~~---~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 117 G----GRP---IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred C----CcC---HHHHHHHHHHhcCCCeEEEEEeec
Confidence 2 123 678999999999999999998764
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-10 Score=100.08 Aligned_cols=98 Identities=24% Similarity=0.342 Sum_probs=75.1
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
++.+|||+|||+|.++ ...+..+|+++|+|+.+++.++++ +++++..|..+. .++++||+|+++-.++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 5679999999999864 347777899999999999999886 266788887663 3478999999987654
Q ss_pred hcCC--hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLST--ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.-.+ .+-...++++..+.|||||.+++...
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 4332 11267899999999999999987653
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=109.53 Aligned_cols=101 Identities=25% Similarity=0.289 Sum_probs=74.8
Q ss_pred CCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCC----CCCC
Q 017080 122 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNL----PYRS 177 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-----------------~~~~~~~d~~~~----~~~~ 177 (377)
++.+|||+|||.|.-+.. ..-..++|+|||...++.|+++ ...|+.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 778999999999886543 4445999999999999999876 124566666542 1333
Q ss_pred --CceeEEEeccchhh-cCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 178 --DFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 178 --~~fD~V~~~~~l~h-~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
..||+|-|.+++|+ +.+++....+|+.+.+.|+|||+++.+++..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 59999999999998 5666767889999999999999999998764
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=102.65 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred CCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 123 GSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
-.+.||.|+|.|+.+.. .+- -+|..+|+++..++.|++. -.++++..++++....++||+|++.+++.|+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 36999999999998752 333 4899999999999999954 1456777778776556899999999999999
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.|++ ..++|+++...|+|+|.|++-+-
T Consensus 136 TD~d-lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 136 TDED-LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp -HHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHH-HHHHHHHHHHhCcCCcEEEEEec
Confidence 9977 89999999999999999999753
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=99.86 Aligned_cols=101 Identities=22% Similarity=0.277 Sum_probs=70.1
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccccC-CCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGLN-PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
...++..+...+++..|-|+|||.+.++... .+..|...|+-+. +-.+..+|+.+.|+++++.|++++...
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~--------n~~Vtacdia~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP--------NPRVTACDIANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-S--------STTEEES-TTS-S--TT-EEEEEEES-
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCC--------CCCEEEecCccCcCCCCceeEEEEEhh
Confidence 3467778877777889999999999998654 4568999998553 345789999999999999999998877
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
|.-. + +..+|+|+.|+|||||.+.|.+...
T Consensus 132 LMGT-n---~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 132 LMGT-N---WPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp --SS-----HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred hhCC-C---cHHHHHHHHheeccCcEEEEEEecc
Confidence 7543 3 8999999999999999999998653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-10 Score=87.92 Aligned_cols=91 Identities=35% Similarity=0.515 Sum_probs=75.6
Q ss_pred EEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCceeEEEeccchhh-c
Q 017080 125 LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH-L 192 (377)
Q Consensus 125 ~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~~~~fD~V~~~~~l~h-~ 192 (377)
+|||+|||+|.++.. .+..+++++|+++.+++.+++. .+++...|+.+... ..++||+|++..++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 589999999997532 4667999999999999888722 47788888887653 5678999999999998 4
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.. ...+++.+.+.|+|||.+++.
T Consensus 81 ~~---~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 ED---LARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hH---HHHHHHHHHHHcCCCCEEEEE
Confidence 44 789999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-10 Score=102.11 Aligned_cols=98 Identities=23% Similarity=0.267 Sum_probs=72.9
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCce
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~f 180 (377)
+.+.+. +.+|.+|||||||+|.++.. .+...|+++|+.+.+.+.|+++ ++.++.+|........++|
T Consensus 64 ~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 64 MLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SE
T ss_pred HHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCc
Confidence 334443 78999999999999997642 5666899999999999999887 6889999987644456789
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|.|++......++. .+.+.||+||++++..-
T Consensus 143 D~I~v~~a~~~ip~---------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVPEIPE---------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBSS--H---------HHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccchHHH---------HHHHhcCCCcEEEEEEc
Confidence 99999988775543 26677899999998764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-10 Score=100.93 Aligned_cols=93 Identities=18% Similarity=0.126 Sum_probs=71.9
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||+|||+|.++.. ....+++++|+++.+++.++++ ++++..+|+.......++||+|++...+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 456788999999999986532 1124899999999999998875 4788888876533335789999998766
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++++ +.+.+.|+|||.+++...
T Consensus 155 ~~~~---------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PEIP---------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred hhhh---------HHHHHhcCCCcEEEEEEc
Confidence 6543 356789999999998765
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=100.84 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=103.5
Q ss_pred CCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 123 GSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
-..++|||||-|...+. ..+ .+++-+|.|..|++.++.. .+...++|-+.++|.++++|+|++...+||+.+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 35799999999998754 223 3889999999999999876 245688999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
++..+.++...|||+|.++-+-+..+ ...++.-. .-+.+.-+...-..+..++.-..++..+|.+|||..
T Consensus 153 ---LPg~m~~ck~~lKPDg~Fiasmlggd-TLyELR~s------lqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m 222 (325)
T KOG2940|consen 153 ---LPGSMIQCKLALKPDGLFIASMLGGD-TLYELRCS------LQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSM 222 (325)
T ss_pred ---CchHHHHHHHhcCCCccchhHHhccc-cHHHHHHH------hhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccc
Confidence 89999999999999999887765533 22221110 001111111111222233445678899999999966
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-10 Score=108.64 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=74.3
Q ss_pred hCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCC-CCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYR-SDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~-~~~fD~V~~~ 186 (377)
..++++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ +++++.+|+.+..++ .++||+|+++
T Consensus 247 ~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 247 ARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred hccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEEC
Confidence 345567799999999998642 36788999999999999999886 477889998654332 4689999995
Q ss_pred cchh-----hcC----------------C-hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLH-----HLS----------------T-ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~-----h~~----------------~-~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-... ++. + -+-...+++++.+.|+|||.+++..
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4210 000 0 0013467778888999999987754
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-10 Score=102.27 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=82.2
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
...+..+|||||+|+|.++ ..+|+.+++.+|+ |..++.+++. +++++.+|+. -++|. +|+++..++||+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 3456679999999999976 3499999999998 7788777665 7999999998 45655 99999999999999
Q ss_pred ChHHHHHHHHHHHHccccC--cEEEEEEcCCC
Q 017080 194 TESRRKKAIEELVRVVKKG--SLVLITVWAVE 223 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~Lkpg--G~l~i~~~~~~ 223 (377)
+++ -..+|+++++.|+|| |+|+|.+....
T Consensus 173 d~~-~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 173 DED-CVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp HHH-HHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred hHH-HHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 866 899999999999999 99999987644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-10 Score=104.13 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=70.6
Q ss_pred CCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc----CCeE----EEeeCCCCCCCC-CceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR----GHEV----LVADAVNLPYRS-DFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~----~~~~----~~~d~~~~~~~~-~~fD~V~~~~ 187 (377)
..+|.+|||+|||+|.++- ...|+ .|+|+|++|.+++.++++ ++.- ...+.. ..+. ++||+|+++-
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~--~~~~~~~~DvIVANI 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL--EVPENGPFDVIVANI 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch--hhcccCcccEEEehh
Confidence 3588999999999999863 34555 799999999999999987 4441 122222 2233 6999999986
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|-.+ ...+..++.+.|||||+++++-..
T Consensus 238 -LA~v-----l~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 238 -LAEV-----LVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred -hHHH-----HHHHHHHHHHHcCCCceEEEEeeh
Confidence 3222 568899999999999999999654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=102.64 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=73.6
Q ss_pred CEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec-----
Q 017080 124 SLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI----- 186 (377)
Q Consensus 124 ~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~----- 186 (377)
.+|||+|||+|.++ ...++.+|+|+|+|+.+++.|+++ ++.++.+|+.+ ++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 69999999999864 236778999999999999999886 27788888866 3445589999995
Q ss_pred --------cchhhcCC---------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 --------AVLHHLST---------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 --------~~l~h~~~---------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.++.|-|. -+....+++++.++|+|||++++...
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 22333221 01256889999999999999988764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9e-10 Score=102.16 Aligned_cols=103 Identities=16% Similarity=0.283 Sum_probs=76.8
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~~~~fD~V~~~ 186 (377)
.+++.+|||||||+|.++. ..|+.+++++|+++.+++.|+++ +++++.+|+.+. ....++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4567899999999999753 37889999999999999999875 367888887653 2224689999975
Q ss_pred cch-hhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AVL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l-~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
..- ..++.......+++++.+.|+|||++++..+..
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 311 112211002689999999999999999976643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=98.33 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=72.6
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCC-C-CCCCceeEEEeccch--
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL-P-YRSDFGDAAISIAVL-- 189 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~-~-~~~~~fD~V~~~~~l-- 189 (377)
++.+|||+|||+|.++ ...++.+|+|+|+|+.+++.++++ +++++.+|+.+. + ...++||+|+++--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3458999999999864 236778999999999999999876 578899998763 2 113579999986421
Q ss_pred ----hhcCCh-----------------HHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 ----HHLSTE-----------------SRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ----~h~~~~-----------------~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..++.+ +-...+++.+.++|||||++++...
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 111111 0034778888899999999998753
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=102.28 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=72.9
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc--
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~-- 187 (377)
++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ ++.++.+|+.+ ++++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 45799999999999652 36788999999999999999876 36788899754 23466899999961
Q ss_pred ----chhhcCC----------------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 ----VLHHLST----------------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ----~l~h~~~----------------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+.+++. -+....+++++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111110 01136789999999999999988653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=100.52 Aligned_cols=103 Identities=24% Similarity=0.338 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHc-------------CCeEEEeeCCC------CCCCC
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------------GHEVLVADAVN------LPYRS 177 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~------~~~~~ 177 (377)
.+++..++|+|||-|.-+.. ..+ ..++|+||+...++.|+++ .+.|+.+|... +++++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 46788999999999875543 223 3899999999999999987 25778888754 34455
Q ss_pred CceeEEEeccchhh-cCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 178 DFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 178 ~~fD~V~~~~~l~h-~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.+||+|-|.+++|+ +.+.+....+|+++.+.|||||+++-+.++.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 56999999999997 6777778899999999999999988877654
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=98.84 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=79.2
Q ss_pred CCCEEEEECCccCccccc-CCC-ceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHH
Q 017080 122 SGSLVLDAGCGNGKYLGL-NPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~-~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~ 199 (377)
...++||||+|.|..+.. .+- .+|++.+.|+.|...-++++.+++ |..++.-.+.+||+|.|.++|....+ |.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl--~~~~w~~~~~~fDvIscLNvLDRc~~---P~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVL--DIDDWQQTDFKFDVISCLNVLDRCDR---PL 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEE--ehhhhhccCCceEEEeehhhhhccCC---HH
Confidence 346899999999998754 332 379999999999999999888765 44445544678999999999999988 99
Q ss_pred HHHHHHHHccccCcEEEEEEcC
Q 017080 200 KAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+|+++++.|+|+|.+++....
T Consensus 169 ~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 169 TLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred HHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999998643
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=99.39 Aligned_cols=99 Identities=26% Similarity=0.294 Sum_probs=73.5
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..++.+|||+|||+|.++. ..+...++|+|+|+.+++.++++ ++.++.+|+... +++++||+|+++-.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 3466799999999998642 35778999999999999998875 477888888552 33678999998522
Q ss_pred h------hhcCC-----------------hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 L------HHLST-----------------ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l------~h~~~-----------------~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. +.+.. .+....+++++.++|+|||++++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 11111 0114678889999999999999854
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=97.24 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=79.5
Q ss_pred HhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCceeE
Q 017080 117 LNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDA 182 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~fD~ 182 (377)
....+...+|||+|||+|... ...+.++++|||+.+.+.+.|+++ +++++++|+.++. ....+||+
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCE
Confidence 334455789999999999953 334669999999999999999987 5899999999864 34457999
Q ss_pred EEeccchhhcCCh---------------HHHHHHHHHHHHccccCcEEEEEEc
Q 017080 183 AISIAVLHHLSTE---------------SRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 183 V~~~~~l~h~~~~---------------~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|+|+=-..-..+. -..+.+++...+.|||||.+.+.-.
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 9995332211111 0168899999999999999999854
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=101.88 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=72.3
Q ss_pred CEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc----
Q 017080 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA---- 187 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~---- 187 (377)
.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ +++++.+|+.+. +++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999752 36788999999999999999876 267888997652 3456899999861
Q ss_pred --ch-------hhcCC---------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 --VL-------HHLST---------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 --~l-------~h~~~---------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+ .|-+. -+....+++++.++|+|||.+++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 11111 01136789999999999999988643
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=94.08 Aligned_cols=93 Identities=20% Similarity=0.142 Sum_probs=77.4
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||||||+|..+.. .-..+|+.+|..+...+.|+++ |+.+.++|...-.-+..+||.|+.....
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 467899999999999997643 2223999999999999999987 6889999988754456899999999998
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..+|. . +.+.|||||++++-.-
T Consensus 149 ~~vP~-----~----Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 149 PEVPE-----A----LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCH-----H----HHHhcccCCEEEEEEc
Confidence 88876 2 5677899999999865
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=102.03 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=71.0
Q ss_pred CCCCCCEEEEECCccCccccc----C-CCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~----~-~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++++.+|||||||+|.++.. . ....|+++|+++.+++.|+++ ++.++.+|+...+...++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 356788999999999997532 2 235799999999999988874 4778888887655445789999998
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..+.+++ ..+.+.|+|||.+++..
T Consensus 157 ~g~~~ip---------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP---------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHhH---------HHHHHhcCCCCEEEEEe
Confidence 7665543 23577899999988864
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=95.55 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=68.8
Q ss_pred CCCEEEEECCccCc--c-----c-c---cCC--CceEEEEeCCHHHHHHHHHc---------------------------
Q 017080 122 SGSLVLDAGCGNGK--Y-----L-G---LNP--DCFFVGCDISPSLIKICVDR--------------------------- 161 (377)
Q Consensus 122 ~~~~vLDiGcG~G~--~-----~-~---~~~--~~~v~gvD~s~~~~~~a~~~--------------------------- 161 (377)
+.-+|+.+||+||. + + . ... ..+|+|+|+|+.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 44699999999998 1 1 1 112 46999999999999999863
Q ss_pred --------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 162 --------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+.|...|+.+.+.+.+.||+|+|.+|+-++..+. ..++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-HHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-HHHHHHHHHHHcCCCCEEEEec
Confidence 36888889888444578999999999999998765 7899999999999999999973
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.8e-09 Score=91.16 Aligned_cols=144 Identities=18% Similarity=0.193 Sum_probs=100.7
Q ss_pred CCCC-EEEEECCccCcc----cccCCCceEEEEeCCHHHHHHHHH----c---CC-eEEEeeCCCC--CC------CCCc
Q 017080 121 PSGS-LVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVD----R---GH-EVLVADAVNL--PY------RSDF 179 (377)
Q Consensus 121 ~~~~-~vLDiGcG~G~~----~~~~~~~~v~gvD~s~~~~~~a~~----~---~~-~~~~~d~~~~--~~------~~~~ 179 (377)
++.. +|||||||||.. +...|.....-.|+++........ . |+ .-+..|+... +. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 599999999994 455888888888998887533332 2 22 2355677654 22 2468
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCC
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSART 259 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 259 (377)
||+|+|.+++|-++-.. ...+++.+.++|+|||.|++.-+.... ....+..+.-++.|++...+.. -..+
T Consensus 103 ~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~------G~~ts~SN~~FD~sLr~rdp~~---GiRD 172 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRD------GKFTSESNAAFDASLRSRDPEW---GIRD 172 (204)
T ss_pred cceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccC------CEeCCcHHHHHHHHHhcCCCCc---CccC
Confidence 99999999999777655 789999999999999999998765443 2223334455566666544332 3446
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.+++.++..++|++-
T Consensus 173 ~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 173 IEDVEALAAAHGLEL 187 (204)
T ss_pred HHHHHHHHHHCCCcc
Confidence 678999999999954
|
The function of this family is unknown. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-09 Score=103.47 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=77.7
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--~~~~~fD~V~~~ 186 (377)
.+.+|.+|||+|||+|..+. ..++..|+++|+|+.+++.++++ ++.++.+|+..++ ++.++||.|++.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 45678999999999998642 24557999999999999998876 3578888988754 345789999953
Q ss_pred c------chh------hcCChHH-------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 187 A------VLH------HLSTESR-------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 187 ~------~l~------h~~~~~~-------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
. ++. +....++ ..++|.++.++|||||.+++++.+..
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 2 221 1112111 24789999999999999999886543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.2e-09 Score=89.65 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=79.8
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++++++|||||||..+ ...|..+|+++|-++.+++..++| |+.++.+++.+.--...+||.|+..+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 4678999999999999964 348999999999999999988877 67888888876321222799999998
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
. . + .+.+|+.+...|||||++++.....
T Consensus 111 g-~---~---i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 111 G-G---N---IEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred C-C---C---HHHHHHHHHHHcCcCCeEEEEeecH
Confidence 7 3 2 6789999999999999999986554
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-09 Score=93.49 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=79.8
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
...+++.+...+....|-|+|||.+.++. .....|..+|+-+. +-+++.+|+.+.|+++++.|++++...|
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~--------~~~V~~cDm~~vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS-SERHKVHSFDLVAV--------NERVIACDMRNVPLEDESVDVAVFCLSL 238 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh-ccccceeeeeeecC--------CCceeeccccCCcCccCcccEEEeeHhh
Confidence 34666777666677899999999999885 23347888887432 3567999999999999999999887666
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.- .+ +..++.|+.|+|+|||.++|.+...
T Consensus 239 Mg-tn---~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 239 MG-TN---LADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred hc-cc---HHHHHHHHHHHhccCceEEEEehhh
Confidence 53 34 8899999999999999999998653
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=104.65 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=80.3
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC----CCCCceeE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP----YRSDFGDA 182 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~----~~~~~fD~ 182 (377)
...+|.+|||+|||+|..+. . .+...|+++|+++.+++.++++ ++.++.+|+..++ ...++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 45678999999999998542 2 3456999999999999988876 4678888988765 44678999
Q ss_pred EEec------cchhhcCCh------HH-------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 183 AISI------AVLHHLSTE------SR-------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 183 V~~~------~~l~h~~~~------~~-------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
|++. +++.+-++. ++ ..++|.++.++|||||.++.++.+..
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9973 455554431 11 25889999999999999998876543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=105.16 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=80.3
Q ss_pred HHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCceeE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDA 182 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~~fD~ 182 (377)
.+..+.+|.+|||+|||+|..+ .. .++.+|+++|+|+.+++.++++ ++.+.++|+..++ +..++||.
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE
Confidence 3345678899999999999743 22 4567999999999999998876 3578888988765 44678999
Q ss_pred EEecc------chhhcCCh-------------HHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 183 AISIA------VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 183 V~~~~------~l~h~~~~-------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
|++.. ++..-++. ....++|.++.+.|||||.++.++.+..
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99732 22221210 0135779999999999999999987754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-09 Score=97.46 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=76.9
Q ss_pred CCEEEEECCccCc--c-----c-cc----CCCceEEEEeCCHHHHHHHHHc-----------------------------
Q 017080 123 GSLVLDAGCGNGK--Y-----L-GL----NPDCFFVGCDISPSLIKICVDR----------------------------- 161 (377)
Q Consensus 123 ~~~vLDiGcG~G~--~-----~-~~----~~~~~v~gvD~s~~~~~~a~~~----------------------------- 161 (377)
.-+|+..||+||. + + .. ....+|+|+|+|+.+++.|++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999998 1 1 11 1246899999999999998853
Q ss_pred ---------CCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 162 ---------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 162 ---------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.|.|.+.|+.+.+++ .+.||+|+|.+++.|+..+. ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-HHHHHHHHHHHhCCCcEEEEeC
Confidence 246677777765443 57899999999999997755 7999999999999999988863
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-09 Score=105.48 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=78.4
Q ss_pred HhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 117 LNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
+....+|.+|||+|||+|..+ .. ..+..|+++|+|+.+++.++++ ++.+..+|+..++ ++++||+|+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEE
Confidence 334567889999999999743 22 3456999999999999988876 3678888988765 467899999
Q ss_pred ec------cchhhc------CChH-------HHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 185 SI------AVLHHL------STES-------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 185 ~~------~~l~h~------~~~~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
+- +++..- .+.+ ....+|.++.+.|||||++++++.+...
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 62 222111 1111 1346899999999999999999876543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-09 Score=103.20 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=77.4
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----CCe--E--EEeeCCCCCC--CCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GHE--V--LVADAVNLPY--RSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~~~--~--~~~d~~~~~~--~~~~fD~V~ 184 (377)
...+|.+|||+|||+|..+ ...+..+|+++|+|+.+++.++++ ++. + ..+|....+. +.++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 4567899999999999754 224467999999999999988876 432 3 4455544433 467899999
Q ss_pred e------ccchhhcCCh------H-------HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 185 S------IAVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 185 ~------~~~l~h~~~~------~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+ .+++++.++- + ...++|.++.++|||||.+++++.+..
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 6 3456655541 0 025799999999999999999987764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-09 Score=97.00 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+..+.++.+|||+|||+|..+. . .....|+++|+++.+++.++++ ++.+...|+..++...++||.|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEE
Confidence 33456788999999999999642 2 3346999999999999988876 4677888887765555679999
Q ss_pred Eecc------chhhcCCh------H-------HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 184 ISIA------VLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 184 ~~~~------~l~h~~~~------~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
++.. ++.+-++. + ....+|+++.+.|||||+++.++-+..
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9732 22221110 0 124699999999999999998876544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-09 Score=98.55 Aligned_cols=95 Identities=18% Similarity=0.265 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
..++.+|||+|||+|.++- ...|+ +|+|+|++|.+++.|+++ + .++.+....+ ...++||+|+++-..+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--LVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--TCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--cccccCCEEEECCCHH
Confidence 4678899999999999752 33454 899999999999999987 2 2343332222 3358999999976544
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
- ...++..+.++|+|||+++++-+..
T Consensus 237 v------L~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 237 V------LLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp H------HHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred H------HHHHHHHHHHhhCCCCEEEEccccH
Confidence 2 4578888999999999999986543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-09 Score=98.23 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=73.7
Q ss_pred CCCCEEEEECCccCccccc---CC-CceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC-CCCCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NP-DCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~-~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~-~~~~~~fD~V 183 (377)
+.+.+||+||||+|..++. .+ ..+|+++|+++.+++.|++. +++++.+|+..+ ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4567999999999997642 43 45899999999999999874 357788888763 3346789999
Q ss_pred EeccchhhcCChH-HHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++...-.+.+... --..+++.+.+.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9965433322211 02578999999999999988754
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.7e-09 Score=103.80 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=71.0
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc--
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~-- 187 (377)
++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ ++.++.+|+.. +++.++||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 34689999999998652 36788999999999999999876 35678888754 23456899999942
Q ss_pred ------------chhhcCC------h---HHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 ------------VLHHLST------E---SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ------------~l~h~~~------~---~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+..|-+. . +....+++++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1111110 0 114567888999999999998764
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=91.75 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=74.6
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+.+|||+|||.|.+. ...|..+++-+|+|..+++.++.+ + ..+...|..+ +..+ +||+|+|+=-+|
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh 235 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFH 235 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCcc
Confidence 3459999999999863 458899999999999999999987 2 2355566554 3334 999999988877
Q ss_pred hcCChH--HHHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLSTES--RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~~~--~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
-=.+.. --.+++++..+.|++||.|.|..-
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 432211 024899999999999999999864
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=88.58 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=70.4
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
+.++.+|||+|||+|.++.. ..+.+++++|+++.+++.++++ +++++.+|+.++++++.+||.|+++-.. |+
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py-~~ 89 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY-NI 89 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-cc
Confidence 45678999999999998643 3367999999999999999876 5789999999988777789999987544 33
Q ss_pred CChHHHHHHHHHHHHc--cccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRV--VKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~--LkpgG~l~i~~ 219 (377)
.. ..+..+.+. +.++|.+++..
T Consensus 90 ~~-----~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 ST-----PILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred HH-----HHHHHHHhcCCCcceEEEEEEH
Confidence 32 334444432 44778877763
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=103.73 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=74.3
Q ss_pred CCCCEEEEECCccCccccc---CCC-ceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCC-CCCCCcee
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNL-PYRSDFGD 181 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~-~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~~-~~~~~~fD 181 (377)
+++.+|||||||+|..++. .+. .+|+++|+++.+++.++++ +++++.+|+.+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999997642 455 6999999999999999982 467788888763 23357899
Q ss_pred EEEeccchhhcCChHH--HHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~--~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|++...-...+.... -.++++.+.+.|||||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999754332221000 2468999999999999988874
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=100.00 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=76.0
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~ 184 (377)
.+.++.+|||+|||+|..+. . .+...|+++|+++.+++.++++ ++.++.+|+..++ ++ ++||+|+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEE
Confidence 45678899999999998642 2 3567999999999999988875 3678889987753 33 7899999
Q ss_pred ecc------chhhcCC------hHH-------HHHHHHHHHHccccCcEEEEEEcCC
Q 017080 185 SIA------VLHHLST------ESR-------RKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 185 ~~~------~l~h~~~------~~~-------~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+.. ++.+-++ ..+ ...+|+++.++|||||.++.++-..
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 753 2222121 111 2468999999999999999876543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-08 Score=88.23 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCCEEEEECCccCcccc----c---CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 122 SGSLVLDAGCGNGKYLG----L---NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~---~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
.+.+|||+|||+|.++. . .+..+|+++|+++.+++.|+++ ++.+..+|+...++ +++||+|+++=-..-+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 46799999999999753 1 2456999999999999999987 57899999987654 5689999996544321
Q ss_pred CC---------hHHHHHHHHHHHHccccCcE
Q 017080 193 ST---------ESRRKKAIEELVRVVKKGSL 214 (377)
Q Consensus 193 ~~---------~~~~~~~l~~~~r~LkpgG~ 214 (377)
.. ..-...+++.+.++++||+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 11145688999997777664
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.2e-08 Score=88.26 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=99.2
Q ss_pred CCCCEEEEECCccCccc----ccCCC--ceEEEEeCCHHHHHHHHHc-------CC-eEEEeeCCCCC-CC--CCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYL----GLNPD--CFFVGCDISPSLIKICVDR-------GH-EVLVADAVNLP-YR--SDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~----~~~~~--~~v~gvD~s~~~~~~a~~~-------~~-~~~~~d~~~~~-~~--~~~fD~V 183 (377)
...-+||||.||.|++. ...|. ..|.-.|.|+..++..++. ++ +|.++|+.+.. +. +-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999964 23444 5999999999999887764 34 89999998732 11 3346999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCC-CCCCCccc
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRS-PSARTLES 262 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~ 262 (377)
+.++.++.++|.+.....|+-+.+.+.|||+++.+.-.. ++..++.. ..+. .. .....+ ....+..+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw-HPQle~IA-------r~Lt---sH-r~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW-HPQLEMIA-------RVLT---SH-RDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC-CcchHHHH-------HHHh---cc-cCCCceEEEecCHHH
Confidence 999999999998767778999999999999988875221 11111111 0110 00 000111 44567789
Q ss_pred HHhHhhcCCCcc
Q 017080 263 IPETEDNGSEEQ 274 (377)
Q Consensus 263 l~~~l~~aGF~~ 274 (377)
+.++++.|||..
T Consensus 282 mD~Lv~~aGF~K 293 (311)
T PF12147_consen 282 MDQLVEAAGFEK 293 (311)
T ss_pred HHHHHHHcCCch
Confidence 999999999954
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=106.01 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=76.5
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC-CCCCc
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDF 179 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~~~ 179 (377)
...++..+.++.+|||+|||+|.++-. ..++ +|+++|+|+.+++.|+++ +++++++|+.++. -..++
T Consensus 529 ~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~ 608 (702)
T PRK11783 529 TRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQ 608 (702)
T ss_pred HHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCC
Confidence 334455555688999999999997532 2344 799999999999999986 2578899986632 11568
Q ss_pred eeEEEecc-----------chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 180 GDAAISIA-----------VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 180 fD~V~~~~-----------~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
||+|++.- +.....+ ...++..+.++|+|||.+++..
T Consensus 609 fDlIilDPP~f~~~~~~~~~~~~~~~---y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 609 FDLIFIDPPTFSNSKRMEDSFDVQRD---HVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred cCEEEECCCCCCCCCccchhhhHHHH---HHHHHHHHHHHcCCCCEEEEEe
Confidence 99999842 1222222 6788999999999999988864
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=89.24 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=84.8
Q ss_pred HHhCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
....+.+|++|||.|.|+|.++. ..+..+|+.+|+-+...+.|++| ++.+..+|+.+.-+.+ .||+
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDa 166 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDA 166 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCE
Confidence 33468899999999999999753 26778999999999999999998 3778888988865544 8999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
|+.- +++ |-.++..+.+.|||||.+++..++.++
T Consensus 167 v~LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 167 VFLD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred EEEc-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 9884 778 889999999999999999999877653
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-08 Score=92.48 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=77.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 174 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~--- 174 (377)
++...+....++.+|||||||+|.- +.. .++.+|+++|+++.+++.|+++ +++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence 4555566667788999999999973 222 4567999999999999999886 367889998763 2
Q ss_pred --CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 --~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+.++||+|++-..- .....++..+.+.|+|||.+++-.
T Consensus 138 ~~~~~~~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 124689999885321 126788999999999999988764
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=96.13 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=72.5
Q ss_pred CCCCEEEEECCccCccccc---C-CCceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCC-CCCCCCcee
Q 017080 121 PSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LPYRSDFGD 181 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~-~~~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~-~~~~~~~fD 181 (377)
+.+.+||+||||+|..++. . +..+|++||+++.+++.|++. +++++.+|+.. +....++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4557999999999986542 3 446999999999999999951 57778888877 334457899
Q ss_pred EEEeccchh--hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLH--HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~--h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|++...-. .......-..+++.+++.|+|||++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999974211 10010102579999999999999987763
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=89.31 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=72.2
Q ss_pred EEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CC--CCCCceeEEEeccchh
Q 017080 125 LVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LP--YRSDFGDAAISIAVLH 190 (377)
Q Consensus 125 ~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~-~~--~~~~~fD~V~~~~~l~ 190 (377)
.+||||||.|.++ ...|+..++|+|++...+..+..+ |+.++.+|+.. +. ++++++|.|+..+.=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 8999999999975 348999999999999998777665 78999999988 32 5679999999976554
Q ss_pred hcCChHH-----HHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|...... -..++..++++|+|||.|.+.+-
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 4432110 25899999999999999999863
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-08 Score=96.67 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=74.9
Q ss_pred HHHhCCCCCCEEEEECCccCcccc--cCCC-ceEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC--C--CCC
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP--Y--RSD 178 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~--~~~~-~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~~~--~--~~~ 178 (377)
..+..+.++.+|||+|||+|.++- ...+ .+|+++|+|+.+++.++++ + ++++.+|+.++. + ..+
T Consensus 213 ~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 213 LATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCC
Confidence 344445578899999999999742 2334 4999999999999999876 2 467888987642 1 246
Q ss_pred ceeEEEeccchhhcCCh-------HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 179 FGDAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~-------~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+||+|++.--.. ..+. .....++..+.++|+|||.++...-+
T Consensus 293 ~fDlVilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 293 KFDVIVMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCEEEECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 899999873321 1110 11456677788999999999876543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.69 E-value=8e-09 Score=100.96 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=74.7
Q ss_pred CEEEEECCccCcccccCCCceEEEE-----eCCHHHHHHHHHcCCeEEEeeC--CCCCCCCCceeEEEeccchhhcCChH
Q 017080 124 SLVLDAGCGNGKYLGLNPDCFFVGC-----DISPSLIKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~~~~~~v~gv-----D~s~~~~~~a~~~~~~~~~~d~--~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
..+||||||+|.|........|+.+ |..+.+++.|-++++..+.+-+ ..+||++++||+|+|..++......+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 5899999999999875333333333 4555688999999887765553 56999999999999998775443322
Q ss_pred HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 197 RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.-+|-++.|+|||||+++++.+...
T Consensus 199 --g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 199 --GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --cceeehhhhhhccCceEEecCCccc
Confidence 4689999999999999999876544
|
; GO: 0008168 methyltransferase activity |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-08 Score=87.05 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=97.6
Q ss_pred cchHHHHHHHhC--CCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC
Q 017080 108 AKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL 173 (377)
Q Consensus 108 ~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~ 173 (377)
..|......... .+.|.+|||...|-|..+. ...|+ +|+.++-+|+.++.|+-| +++++.+|+.+.
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 344444444443 3468999999999999864 36777 999999999999888766 578899999874
Q ss_pred --CCCCCceeEEEecc---ch-hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCC
Q 017080 174 --PYRSDFGDAAISIA---VL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGP 247 (377)
Q Consensus 174 --~~~~~~fD~V~~~~---~l-~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 247 (377)
.++|.+||+|+--= .+ .++- -+++.+|++|+|||||.++-.+-++....
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLY----seefY~El~RiLkrgGrlFHYvG~Pg~ry--------------------- 252 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELY----SEEFYRELYRILKRGGRLFHYVGNPGKRY--------------------- 252 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHh----HHHHHHHHHHHcCcCCcEEEEeCCCCccc---------------------
Confidence 48899999997521 11 1333 36899999999999999988875543111
Q ss_pred CCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 248 GSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+...-...+.+.|+++||.+
T Consensus 253 -------rG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 253 -------RGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred -------ccCChhHHHHHHHHhcCcee
Confidence 11122356889999999965
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=89.43 Aligned_cols=109 Identities=27% Similarity=0.316 Sum_probs=85.1
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----C---CeEEEe-eCCCCCCCCCcee
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G---HEVLVA-DAVNLPYRSDFGD 181 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~-d~~~~~~~~~~fD 181 (377)
+.+--++.+.+|..|||==||||.++-. .-|++++|+|++..|++-++.| + ..+... |+..+|++++++|
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vd 266 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVD 266 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccc
Confidence 3344456778999999999999998743 7899999999999999999988 2 334555 9999999999999
Q ss_pred EEEeccchh------hcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 182 AAISIAVLH------HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 182 ~V~~~~~l~------h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.|++---.. -..-++...++|+.+.++||+||++++..+
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999832211 111123367999999999999999998765
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-08 Score=90.77 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCCEEEEECCccCccccc---CCC-ceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-C-CCCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-P-YRSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~-~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~-~~~~~fD~V 183 (377)
+.+.+||+||||.|..++. .++ .+|+.+|+++.+++.+++. +++++.+|+... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4578999999999997642 454 5899999999999999874 477888887542 1 235789999
Q ss_pred EeccchhhcCChH-HHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++...-.+.+... --..+++.+++.|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9965433322210 02478999999999999987753
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=87.76 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=78.5
Q ss_pred CCEEEEECCccCc--c-----c-ccC-----CCceEEEEeCCHHHHHHHHHc----------------------------
Q 017080 123 GSLVLDAGCGNGK--Y-----L-GLN-----PDCFFVGCDISPSLIKICVDR---------------------------- 161 (377)
Q Consensus 123 ~~~vLDiGcG~G~--~-----~-~~~-----~~~~v~gvD~s~~~~~~a~~~---------------------------- 161 (377)
.-+|.-+||+||. + + ... ...+|+|+|+|...++.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5799999999998 1 1 122 357999999999999999853
Q ss_pred --------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 162 --------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.|.|...|+...++..+.||+|+|.+|+-++..+. ..+++..++..|+|||.|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEEEEcc
Confidence 25677777766554577899999999999998765 6899999999999999999963
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-08 Score=91.94 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=78.3
Q ss_pred cchHHHHHHHhCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCC
Q 017080 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR 176 (377)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~ 176 (377)
..++..+..-.++-.++.|||||||||.++. .....+|+++|-|..+ +.|.+. -++++.+.++++.+|
T Consensus 46 ~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP 124 (346)
T KOG1499|consen 46 LAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP 124 (346)
T ss_pred HHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC
Confidence 3334333333345678999999999999753 2344599999988766 555543 267888888887777
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
..+.|+|++-++-+++--+.....+|-.=-+.|+|||.++
T Consensus 125 ~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 125 VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 8899999998887776544435666666779999999865
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.5e-08 Score=89.87 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=69.3
Q ss_pred CCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEEe
Q 017080 122 SGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS 185 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~~ 185 (377)
.+.+||+||||+|.++.. .+..+++++|+++.+++.+++. ++++..+|+... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 445999999999986532 3356899999999999998874 255666665442 222578999998
Q ss_pred ccchhhcCChH-HHHHHHHHHHHccccCcEEEEE
Q 017080 186 IAVLHHLSTES-RRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 186 ~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
......-+... -...+++.+.+.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65422211110 0257889999999999999886
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=83.43 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=91.0
Q ss_pred CEEEEECCccCccc-ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC---CCceeEEEeccchhhcCChHHHH
Q 017080 124 SLVLDAGCGNGKYL-GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRK 199 (377)
Q Consensus 124 ~~vLDiGcG~G~~~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~---~~~fD~V~~~~~l~h~~~~~~~~ 199 (377)
.++|||||=..... ...+-.+|+.||+++.. -.+.+.|+.+.|+| +++||+|.++.||.++|++.++-
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~--------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH--------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC--------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 69999999755433 33455689999998732 44688899987764 67899999999999999998889
Q ss_pred HHHHHHHHccccCcE-----EEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 200 KAIEELVRVVKKGSL-----VLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
++++.+++.|+|+|. +++..+..- ....++.+.+.|.++|+.-||..
T Consensus 125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C----------------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 125 EMLRRAHKFLKPPGLSLFPSLFLVLPLPC----------------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHhCCCCccCcceEEEEeCchH----------------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 999999999999999 888865431 11134566788999999999955
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5e-08 Score=93.83 Aligned_cols=105 Identities=26% Similarity=0.301 Sum_probs=90.5
Q ss_pred HHHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEE
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+...+.++..++|+|||-|....+ +..+.++|+|.++..+..+... ...++.+|+...|++++.||.+
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence 3344567888999999999987643 7889999999999988776654 3456888999999999999999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.+..+..|.++ ...+++|++|+++|||.+...+|..
T Consensus 183 ~~ld~~~~~~~---~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 183 RFLEVVCHAPD---LEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred EEEeecccCCc---HHHHHHHHhcccCCCceEEeHHHHH
Confidence 99999999999 8999999999999999999987764
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-07 Score=85.40 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=79.2
Q ss_pred HHHHHhCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCC---
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR--- 176 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~--- 176 (377)
++-....+.||++|||.|.|+|.++. ..|..+|+..|..+...+.|+++ ++.+...|+....+.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 33444578999999999999999753 27889999999999999999987 578899999753332
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHcc-ccCcEEEEEEcCCCc
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVV-KKGSLVLITVWAVEQ 224 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~L-kpgG~l~i~~~~~~~ 224 (377)
++.+|.|+.- +++ |-.++..+.++| ||||.+.+..++.++
T Consensus 111 ~~~~DavfLD-----lp~---Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 111 ESDFDAVFLD-----LPD---PWEAIPHAKRALKKPGGRICCFSPCIEQ 151 (247)
T ss_dssp TTSEEEEEEE-----SSS---GGGGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred cCcccEEEEe-----CCC---HHHHHHHHHHHHhcCCceEEEECCCHHH
Confidence 3679999885 777 778999999999 999999999887653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-07 Score=82.06 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=68.7
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHcC-----CeEEEe-----------------------
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRG-----HEVLVA----------------------- 168 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~----------------------- 168 (377)
-.+..+|||||..|.++. .+....++|+||.+..++.|+++. ....+.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 346789999999999753 244457999999999999999870 000000
Q ss_pred ---eC---------------C-CCCCCCCceeEEEeccchhh--cCC-hHHHHHHHHHHHHccccCcEEEEE
Q 017080 169 ---DA---------------V-NLPYRSDFGDAAISIAVLHH--LST-ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 169 ---d~---------------~-~~~~~~~~fD~V~~~~~l~h--~~~-~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
|+ . -+.+....||+|+|..+--| +.. ++.+..+++++.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 0 01233467999999776443 321 233889999999999999998886
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-07 Score=98.20 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-----------------------CCeEEEeeCCCCCC
Q 017080 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-----------------------GHEVLVADAVNLPY 175 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-----------------------~~~~~~~d~~~~~~ 175 (377)
+.+|||+|||+|.++ ...+..+|+|+|+|+.+++.|+.+ +++|+.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999964 236778999999999999998665 25788888876431
Q ss_pred C-CCceeEEEeccc--------------hhhcC--------------C----h---HHHHHHHHHHHHccccCcEEEEEE
Q 017080 176 R-SDFGDAAISIAV--------------LHHLS--------------T----E---SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 176 ~-~~~fD~V~~~~~--------------l~h~~--------------~----~---~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ..+||+|+++=. .+|-| . . +-..+++.++.++|+|||++++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 236999999521 11100 0 0 003677888889999999988765
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=82.51 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=78.7
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----ccCC-CceEEEEeCCHHHHHHHHHc--------CCeEEE-eeCCCC-C-C
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLV-ADAVNL-P-Y 175 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~-~d~~~~-~-~ 175 (377)
.++.++..+.++.+|||||++.|.-+ ...| ..+++.+|+++++.+.|+++ .+..+. +|+.+. . .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 45566666778889999999999842 3344 67999999999999999987 255566 466542 2 3
Q ss_pred CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..++||+|+.-.. ..+.+.++..+.++|+|||.+++-...
T Consensus 129 ~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 129 LDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred cCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 4689999998542 222678999999999999999887543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-07 Score=84.59 Aligned_cols=93 Identities=23% Similarity=0.353 Sum_probs=65.8
Q ss_pred EEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCCCCceeEEEeccc-----
Q 017080 125 LVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIAV----- 188 (377)
Q Consensus 125 ~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~d~~~~~~~~~~fD~V~~~~~----- 188 (377)
+|||+|||+|..+ ...+.++|+|+|+|+.+++.|+.+ + +.++..|... +. .++||+|+++=-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCCc
Confidence 7999999999964 347778999999999999999887 4 2344444433 12 348999999521
Q ss_pred hhhcCC-----------------hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLST-----------------ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~-----------------~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..+... -+-...++.++.+.|+|||.+++..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 111110 0115678888999999999988875
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-07 Score=85.04 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=78.4
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CC-C-
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LP-Y- 175 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~-~- 175 (377)
+++..+....++++|||||+|+|..+ .. .++..++.+|.++...+.|+++ .++++.+|+.+ ++ +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 45556666677889999999999853 22 3467899999999999999886 47788898866 22 1
Q ss_pred ---CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 176 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 176 ---~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..++||+|+.-.- ......++..+.++|+|||.+++-.
T Consensus 188 ~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred hcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 1368999998653 2226789999999999999988754
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.1e-07 Score=79.64 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=69.6
Q ss_pred CCCCEEEEECCccCcccc--c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-CCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~~~~~~fD~V~~~~~l 189 (377)
.++.+|||+|||+|.++. . ....+|+++|.++.+++.++++ ++.++.+|+.+. +...++||+|++.=-.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 456799999999999753 2 2235999999999999988876 467888888663 2234579999997653
Q ss_pred hhcCChHHHHHHHHHHHH--ccccCcEEEEEEcC
Q 017080 190 HHLSTESRRKKAIEELVR--VVKKGSLVLITVWA 221 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r--~LkpgG~l~i~~~~ 221 (377)
.. .- ...+++.+.. +|+|+|++++....
T Consensus 132 ~~-g~---~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK-GL---LEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC-Ch---HHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 21 11 3455666655 37999999888643
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-07 Score=88.13 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=66.4
Q ss_pred CCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~~~~fD~V~~~~~l~h 191 (377)
++.+|||+|||+|.++.. .++.+|+|+|+|+.+++.|+++ +++|+++|+.++.. ..+.||+|++.-.-.-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRG 252 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCC
Confidence 468999999999997632 4567999999999999999876 47899999987542 3457999998732110
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
....+.++...++|++.+++++-
T Consensus 253 ------~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 253 ------IGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred ------ccHHHHHHHHHcCCCeEEEEECC
Confidence 11223333344688888888753
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-07 Score=78.35 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=61.9
Q ss_pred CCCCEEEEECCccCcccc--cCCC-ceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~-~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
-.|.+|+|+|||||.++- ...| ..|+|+|+.+.+++.++++ ++.|+++|+.+. .+.+|.++++=-+.-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 367899999999999852 3444 5999999999999999998 589999999887 567888888654432
Q ss_pred c---CChHHHHHHHHHHHHcc
Q 017080 192 L---STESRRKKAIEELVRVV 209 (377)
Q Consensus 192 ~---~~~~~~~~~l~~~~r~L 209 (377)
. .| ..+|....+.-
T Consensus 121 ~~rhaD----r~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHAD----RPFLLKALEIS 137 (198)
T ss_pred ccccCC----HHHHHHHHHhh
Confidence 1 33 35565555544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=71.51 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=70.0
Q ss_pred CCCEEEEECCccCc-cccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGNGK-YLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~G~-~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~ 197 (377)
++.+|||||||+|. ++.. ..+.+|+++|+++..++.++++.++++++|+.+.++. -+.+|+|.+... ..+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~e- 89 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PRD- 89 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CHH-
Confidence 45789999999996 5432 5688999999999999999999999999999986532 356899998642 212
Q ss_pred HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
....+.++++.+ |.-++|.....+
T Consensus 90 l~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 90 LQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred HHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 555566666644 456777766554
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.7e-07 Score=80.70 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=75.4
Q ss_pred CEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCceeEEEeccch
Q 017080 124 SLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIAVL 189 (377)
Q Consensus 124 ~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~~~~~fD~V~~~~~l 189 (377)
..+||||||.|.++ ...|...++|||+....+..|.++ |+.++..|+..+- +++++.|-|..++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 48999999999975 348999999999999887766654 5677888887631 456699999998765
Q ss_pred hhcCChHH-----HHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
-|-..... -..+++.+.++|+|||.|.+.+-
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 54433110 25899999999999999999863
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-07 Score=81.60 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=75.4
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 174 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~--- 174 (377)
+++..+.......+||||||++|.-+ .. .++++|+.+|+++...+.|++. .++++.+|+.+. +
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 34444444556779999999999843 23 4578999999999999999875 478999998752 2
Q ss_pred --CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 --~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+.++||+|+.-..= .+....+..+.++|+|||.+++-.
T Consensus 115 ~~~~~~~fD~VFiDa~K------~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADK------RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HTTTTTSEEEEEEESTG------GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hccCCCceeEEEEcccc------cchhhHHHHHhhhccCCeEEEEcc
Confidence 113689999987632 226788999999999999988864
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-07 Score=90.49 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC----CCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~----~~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++.. .....|+|+|+|+.|++.|+++ +++++.+|+.+. ++.+++||+|++.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 45778999999999997532 2346999999999999999876 478999998652 2446789999885
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-.-.- ....+..+.+ ++|++.++++.
T Consensus 375 PPr~g------~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPRAG------AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCCcC------hHHHHHHHHh-cCCCeEEEEEe
Confidence 32111 2345555555 68999999986
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.4e-07 Score=83.45 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
-...+|+|.|.|+.+. .+|. |-|+++....+..+++. ++..+-+|+..- .|.+ |+|++.+++||+.|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDE 252 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChH
Confidence 3789999999999764 3565 55666666655554444 478888888764 4444 699999999999997
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+ ..++|++++..|+|||.+++.+....
T Consensus 253 d-cvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 253 D-CVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred H-HHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 6 89999999999999999999986433
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-07 Score=79.42 Aligned_cols=93 Identities=24% Similarity=0.237 Sum_probs=75.2
Q ss_pred CCCCCCEEEEECCccCccccc------CCCceEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCCCC
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL------NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLPY 175 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~------~~~~~v~gvD~s~~~~~~a~~~-----------------~~~~~~~d~~~~~~ 175 (377)
++.||.+.||+|+|+|.++.. .++..++|||.-++.++.++++ .+.++++|.....-
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 578999999999999997531 5666779999999999999887 35778889888766
Q ss_pred CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+||.|++... .....+++...|+|||.+++-..
T Consensus 159 e~a~YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 159 EQAPYDAIHVGAA---------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ccCCcceEEEccC---------ccccHHHHHHhhccCCeEEEeec
Confidence 6789999999843 23566678888999999998753
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.41 E-value=8e-07 Score=77.27 Aligned_cols=98 Identities=20% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCCCCEEEEECCccCccc---c-cCCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCC----CCCCcee
Q 017080 120 LPSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP----YRSDFGD 181 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~---~-~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~----~~~~~fD 181 (377)
..++.+|||+|||+|... . .....+|+..|.++ .++..+.+ .+.+...|-.+.. ...++||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 356789999999999742 2 23677999999999 77766655 2345555543311 2346899
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+|++..+++.-.. ...+++-+.++|+|+|.+++....
T Consensus 122 ~IlasDv~Y~~~~---~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 122 VILASDVLYDEEL---FEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEEES--S-GGG---HHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEEecccchHHH---HHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999999997544 889999999999999997777644
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=70.27 Aligned_cols=94 Identities=34% Similarity=0.606 Sum_probs=72.8
Q ss_pred EEEECCccCc--ccc-cCCC-ceEEEEeCCHHHHHHHHHcC-------CeEEEeeCCC--CCCCC-CceeEEEeccchhh
Q 017080 126 VLDAGCGNGK--YLG-LNPD-CFFVGCDISPSLIKICVDRG-------HEVLVADAVN--LPYRS-DFGDAAISIAVLHH 191 (377)
Q Consensus 126 vLDiGcG~G~--~~~-~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~d~~~--~~~~~-~~fD~V~~~~~l~h 191 (377)
++|+|||+|. ++. ..+. ..++|+|+++.++..++... +.+...|... +++.. ..||++ +.....+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence 9999999997 333 2332 58999999999998866553 4778888776 67766 489999 6555555
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
..+ +...+.++.+.|+|+|.+++......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 544 67999999999999999999876644
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.8e-06 Score=77.00 Aligned_cols=134 Identities=15% Similarity=0.050 Sum_probs=85.3
Q ss_pred CCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc-----------------------------------C
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-----------------------------------G 162 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~-----------------------------------~ 162 (377)
..|.++||||||+-.+-. ..+.+ +|+..|.++.-++..++. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 356799999999976532 22333 799999988776543321 1
Q ss_pred C-eEEEeeCCCCC-CCC-----CceeEEEeccchhhc-CChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc
Q 017080 163 H-EVLVADAVNLP-YRS-----DFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234 (377)
Q Consensus 163 ~-~~~~~d~~~~~-~~~-----~~fD~V~~~~~l~h~-~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 234 (377)
+ .++.+|+...+ +.. ..||+|++..+++.. ++.+....+++++.++|||||.|++........ ...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-Y~v----- 208 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-YMV----- 208 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-EEE-----
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-EEE-----
Confidence 2 46778887743 332 259999999999986 465668899999999999999999986542210 000
Q ss_pred cchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 235 PLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 235 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
..........+.+.+++.|+++||.+
T Consensus 209 --------------G~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 209 --------------GGHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp --------------TTEEEE---B-HHHHHHHHHHTTEEE
T ss_pred --------------CCEecccccCCHHHHHHHHHHcCCEE
Confidence 00001133456688999999999977
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=82.68 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=70.5
Q ss_pred CCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
+.+.+||.||+|.|..++. .+..+|+.+|+++.+++.|++. +++++.+|+... ....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3457999999999987642 3446899999999999999875 367788888763 33457899999
Q ss_pred eccc-------hhhcCChHHHHHHHH-HHHHccccCcEEEEE
Q 017080 185 SIAV-------LHHLSTESRRKKAIE-ELVRVVKKGSLVLIT 218 (377)
Q Consensus 185 ~~~~-------l~h~~~~~~~~~~l~-~~~r~LkpgG~l~i~ 218 (377)
+-.. ..++-. ..+++ .+.+.|+|||++++.
T Consensus 182 ~D~~dp~~~~~~~~Lyt----~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLADPVEGGPCYQLYT----KSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCCCccccCcchhhcc----HHHHHHHHHHhcCCCcEEEEe
Confidence 8631 122222 46787 899999999998775
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-06 Score=77.67 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=56.7
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcCCe---EEEeeCCCCC-----CCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHE---VLVADAVNLP-----YRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~d~~~~~-----~~~~~fD~V~~~~~l 189 (377)
.++.+|||+|||||.++.. .....|+|+|+++.|+......+.+ +...|+.... ..-..+|+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 4678999999999998643 3335899999999888763333222 3444554322 1113567666542
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...+..+.+.|+| |.+++..
T Consensus 152 ---------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 ---------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------HhHHHHHHHHhCc-CeEEEEc
Confidence 3467789999999 7766543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5e-06 Score=69.96 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=86.0
Q ss_pred CCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCC-----CCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP-----YRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~-----~~~~~fD~V~~~~ 187 (377)
...|.-|||+|.|||-+++. .+...++.++.|++......+. +++++.+|+.++. ..+..||.|+|.-
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 35677999999999998643 5666999999999999988887 7889999998864 5567899999998
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
-+-.++-.. ..++|+++...|.+||.++...+..
T Consensus 126 Pll~~P~~~-~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 126 PLLNFPMHR-RIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccccCcHHH-HHHHHHHHHHhcCCCCeEEEEEecC
Confidence 888887644 6899999999999999998887663
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-06 Score=77.35 Aligned_cols=163 Identities=15% Similarity=0.051 Sum_probs=102.7
Q ss_pred HHHHHHHhhCcccccccccchHHHHHHHhCCC-------CCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHH
Q 017080 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLP-------SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~-------~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~ 160 (377)
.++.+...+......+|.....-++..|..+- ...+||--|||.|+++- ...|..+.|.|.|--|+-...=
T Consensus 17 ~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 17 TLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred HHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 34444444444444455555555555554332 24699999999999863 2558899999999998633221
Q ss_pred --------c---------------------------------------CCeEEEeeCCCCCCCC---CceeEEEeccchh
Q 017080 161 --------R---------------------------------------GHEVLVADAVNLPYRS---DFGDAAISIAVLH 190 (377)
Q Consensus 161 --------~---------------------------------------~~~~~~~d~~~~~~~~---~~fD~V~~~~~l~ 190 (377)
+ ++....+|+.+.-.++ ++||+|++.+.+.
T Consensus 97 iLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID 176 (270)
T PF07942_consen 97 ILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID 176 (270)
T ss_pred HHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee
Confidence 0 1234455555543233 7999999998777
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
-.++ ....|+.+.++|||||..+=.-|.... + .+........-..+.+++.++.+..
T Consensus 177 TA~N---i~~Yi~tI~~lLkpgG~WIN~GPLlyh--------~------------~~~~~~~~~sveLs~eEi~~l~~~~ 233 (270)
T PF07942_consen 177 TAEN---IIEYIETIEHLLKPGGYWINFGPLLYH--------F------------EPMSIPNEMSVELSLEEIKELIEKL 233 (270)
T ss_pred chHH---HHHHHHHHHHHhccCCEEEecCCcccc--------C------------CCCCCCCCcccCCCHHHHHHHHHHC
Confidence 6666 899999999999999954333222110 0 0000001112456789999999999
Q ss_pred CCccc
Q 017080 271 SEEQG 275 (377)
Q Consensus 271 GF~~~ 275 (377)
||++.
T Consensus 234 GF~~~ 238 (270)
T PF07942_consen 234 GFEIE 238 (270)
T ss_pred CCEEE
Confidence 99883
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-06 Score=86.41 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=67.6
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC----CCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~----~~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ +++++.+|+.+. +..+++||+|++.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 45668999999999997532 2345899999999999999876 578999998752 2335679999974
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-.=.-+ ...+++.+.+ ++|++.++++.
T Consensus 370 PPr~G~-----~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 370 PPRKGC-----AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred cCCCCC-----CHHHHHHHHh-cCCCEEEEEcC
Confidence 321111 1356666554 88998887764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=79.23 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=56.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+++.+++.++++ ++.++.+|+..++++ .||.|+++-..+
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCcc
Confidence 345788999999999998643 2356999999999999998875 578999999987754 489999876543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=80.96 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+++.|++.++++ +++++.+|+..+++++-.+|.|+++-.
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 345778999999999997642 2234999999999999999875 688999999988764422577877643
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=78.01 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=76.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----c-cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y- 175 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~-~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~- 175 (377)
+++..+....+..+|||||+++|.-+ . ..++.+++.+|+++...+.|++. .++++.+|+.+. + +
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 44455555556789999999999842 2 24678999999999999998876 578889988662 2 1
Q ss_pred ----CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 176 ----RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 176 ----~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..++||+|+.-.- .......+..+.+.|+|||.+++-.
T Consensus 149 ~~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred hccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1368999998653 2226788888999999999977743
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-06 Score=73.59 Aligned_cols=87 Identities=23% Similarity=0.159 Sum_probs=68.9
Q ss_pred EEEEECCccCcc----cccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 125 LVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 125 ~vLDiGcG~G~~----~~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+++|||+|.|.- +-..|..+++.+|.+..-+...+.- |++++...+++ +....+||+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC---
Confidence 899999999982 3458999999999999765544432 68899999988 55578999999998653
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...++.-+...|++||.+++.-
T Consensus 127 ----l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 ----LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ----HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc
Confidence 7789999999999999988874
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=82.80 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=82.1
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC----
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP---- 174 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~---- 174 (377)
+.....+...-.|++|||+=|=||.++- ...|+ +|++||+|...+++|+++ .+.|+++|+..+-
T Consensus 206 R~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 206 RDNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred HHHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 3444455555459999999999999863 35677 999999999999999998 2579999997742
Q ss_pred CCCCceeEEEec---------cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 175 YRSDFGDAAISI---------AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 175 ~~~~~fD~V~~~---------~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
-...+||+|++- ....-..+ ...++..+.++|+|||.+++++-.
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rd---y~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRD---YKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHH---HHHHHHHHHHHcCCCCEEEEEecC
Confidence 224589999982 22222233 778999999999999999998644
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.22 E-value=3e-06 Score=82.75 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~~~~fD~V~~~~~l~h 191 (377)
++.+|||+|||+|.++. ..++..|+|+|+++.+++.|+++ +++|+.+|+.++.. ..++||+|++.=--..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 46799999999998753 24567999999999999999876 46789999876421 1246999988633221
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ ...+++.+. .++|++.++++.
T Consensus 313 ~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 313 I-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred C-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 1 234555554 479999999986
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-06 Score=83.82 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=64.4
Q ss_pred CCEEEEECCccCccccc--------CCCceEEEEeCCHHHHHHHHH----c----CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 123 GSLVLDAGCGNGKYLGL--------NPDCFFVGCDISPSLIKICVD----R----GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--------~~~~~v~gvD~s~~~~~~a~~----~----~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+..|||||||+|.+... ....+|++|+-|+.+....+. + .|+++.+|++++..+. +.|+||+-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 56899999999997521 234599999999987755432 2 5899999999987644 89999995
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.+- .+-+.|.....|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 543 33343446778999999999998754
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-06 Score=72.89 Aligned_cols=102 Identities=26% Similarity=0.370 Sum_probs=68.8
Q ss_pred HHhCCCCCCEEEEECCccCccccc----CCCc---------eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLGL----NPDC---------FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP 174 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~~----~~~~---------~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~ 174 (377)
.++...++..|||--||+|.++-+ .... .++|.|+++.+++.|+++ .+.+.+.|+..++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 344567788999999999997521 2222 399999999999999987 2578899999999
Q ss_pred CCCCceeEEEeccchhh-cCCh----HHHHHHHHHHHHccccCcEEEEE
Q 017080 175 YRSDFGDAAISIAVLHH-LSTE----SRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h-~~~~----~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+.++++|+|++.--..- +.+. +-...+++++.++|++ ..+++.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 87899999999765543 2221 1145778999999999 333333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.8e-07 Score=78.48 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCEEEEECCccCccccc-CCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHH
Q 017080 123 GSLVLDAGCGNGKYLGL-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~-~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~ 200 (377)
+.++||+|+|.|..+.. .|.. +|.+.++|..|....++++.+++. ..++.-.+-+||+|.|..++.-.-+ +-+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~--~~ew~~t~~k~dli~clNlLDRc~~---p~k 187 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLT--EIEWLQTDVKLDLILCLNLLDRCFD---PFK 187 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceee--ehhhhhcCceeehHHHHHHHHhhcC---hHH
Confidence 46999999999998754 5554 799999999999999888665543 3333333557999999999998877 889
Q ss_pred HHHHHHHcccc-CcEEEEEE
Q 017080 201 AIEELVRVVKK-GSLVLITV 219 (377)
Q Consensus 201 ~l~~~~r~Lkp-gG~l~i~~ 219 (377)
+|+.++.+|+| +|.++++-
T Consensus 188 LL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 188 LLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHhccCCCcEEEEE
Confidence 99999999999 89888763
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-06 Score=86.91 Aligned_cols=98 Identities=13% Similarity=0.224 Sum_probs=74.9
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEeccc
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~~~ 188 (377)
.+..+||||||.|.++ ..+|...++|+|++...+..+..+ |+.++..|+..+. ++++++|.|+.++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 3568999999999975 348999999999999877655443 5667777765432 67899999999876
Q ss_pred hhhcCChHH-----HHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
=-|...... -..+++.++++|||||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 555332110 2589999999999999999986
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-05 Score=74.45 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=75.1
Q ss_pred hCCCCCCEEEEECCccCcc----cc----cCCCceEEEEeCCHHHHHHHHHc-------CCeE--EEeeCCCC----CC-
Q 017080 118 NSLPSGSLVLDAGCGNGKY----LG----LNPDCFFVGCDISPSLIKICVDR-------GHEV--LVADAVNL----PY- 175 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~----~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~--~~~d~~~~----~~- 175 (377)
..++++..|+|+|||+|.= +. ......++++|+|..+++.+.++ .+.+ +.+|..+. +-
T Consensus 72 ~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 72 ASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred HhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc
Confidence 3567788999999999982 22 23457899999999999887765 2333 67777552 21
Q ss_pred -CCCceeEEEecc-chhhcCChHHHHHHHHHHHH-ccccCcEEEEEE
Q 017080 176 -RSDFGDAAISIA-VLHHLSTESRRKKAIEELVR-VVKKGSLVLITV 219 (377)
Q Consensus 176 -~~~~fD~V~~~~-~l~h~~~~~~~~~~l~~~~r-~LkpgG~l~i~~ 219 (377)
......+++..+ ++..++..+ ...+|+++++ .|+|||.++|..
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccCCccEEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEec
Confidence 123356666665 899998766 7899999999 999999999975
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-06 Score=69.34 Aligned_cols=69 Identities=25% Similarity=0.387 Sum_probs=58.3
Q ss_pred CCCEEEEECCccCcccc--cCC-CceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYLG--LNP-DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~-~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.|+.++|+|||.|.+.- ..+ .-.|+|+|+.|.+++++..+ ++.++++|+.++.+..+.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 57899999999999862 233 44899999999999999988 67889999999877779999999987665
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=72.06 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=68.8
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCC----C-CCCCCCceeEEE
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAV----N-LPYRSDFGDAAI 184 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~----~-~~~~~~~fD~V~ 184 (377)
.+..|||+|||+|..+ ...|.+.|+++|.|+.++..|.+| .+.++.-+++ . .+...+++|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 4558999999999964 336788999999999999999887 2444433333 2 235578999999
Q ss_pred eccchhhcCC-----------------------hHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLHHLST-----------------------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~h~~~-----------------------~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++=-.---.| .+-...++.-+.|.|+|||.+.+....
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 8532110000 000445667788999999999887653
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=74.29 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCcee---EEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGD---AAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD---~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. .....|+++|+++.+++.++++ +++++.+|+..++++ .|| +|+++-.
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 45678999999999998653 2335799999999999998875 578899999988764 466 6666543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.7e-06 Score=77.05 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=56.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++.+|||||||+|.++.. ..+.+|+++|+++.+++.++++ +++++.+|+...++ ..||.|+++-.
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlP 110 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVP 110 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCC
Confidence 456788999999999998643 3456899999999999988864 47889999987654 36898887543
Q ss_pred hhhcCC
Q 017080 189 LHHLST 194 (377)
Q Consensus 189 l~h~~~ 194 (377)
.++..
T Consensus 111 -Y~Ist 115 (294)
T PTZ00338 111 -YQISS 115 (294)
T ss_pred -cccCc
Confidence 33444
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=69.61 Aligned_cols=102 Identities=22% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
-+.++.+|+|+|+-.|.|++. .++..|+|+|+.|.-+ -.++.++++|+..-+ +....+|+|++
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 467899999999999999753 4556799999977432 125899999998743 33455799997
Q ss_pred ccch--------hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 186 IAVL--------HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 186 ~~~l--------~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
-..= +|......-..++.-+..+|+|||.+++-.+-...
T Consensus 118 D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 118 DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 4432 44443332456667777899999999999876543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.5e-05 Score=68.86 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=64.0
Q ss_pred CCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-CCC-ceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-RSD-FGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~-~~~-~fD~V~~~ 186 (377)
.+.+|||++||+|.+.-. ..++ .|+++|.++.+++.++++ +++++.+|+... . + ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999997532 3444 899999999999988876 256788888542 2 2 122 47777774
Q ss_pred cchhhcCChHHHHHHHHHHH--HccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~--r~LkpgG~l~i~~~ 220 (377)
=-... .. ...++..+. .+|+++|.+++...
T Consensus 129 PPy~~-~~---~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN-GA---LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC-Cc---HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 33321 22 345555554 36889988777653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-06 Score=71.32 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=62.3
Q ss_pred EEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCCCCCCceeEEEeccchhhcCChHHHHHHHH
Q 017080 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203 (377)
Q Consensus 125 ~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~ 203 (377)
-.+-||||.=.+ .|+...+-+.-.+. +. +++++. ..+|.+++.|+|.+.++++|+.-++ -..+++
T Consensus 5 ~kv~ig~G~~r~---npgWi~~d~ed~~~---------vd-lvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-g~~alk 70 (185)
T COG4627 5 EKVKIGAGGKRV---NPGWIITDVEDRPE---------VD-LVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-GTSALK 70 (185)
T ss_pred eEEEEecccccc---CCCceeeehhcccc---------cc-hhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-HHHHHH
Confidence 367789998443 45655543332221 11 222333 3568899999999999999998766 789999
Q ss_pred HHHHccccCcEEEEEEcCCCc
Q 017080 204 ELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 204 ~~~r~LkpgG~l~i~~~~~~~ 224 (377)
+++|.|||||+|-|+.+....
T Consensus 71 echr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 71 ECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred HHHHHhCcCcEEEEEcCCcch
Confidence 999999999999999887643
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.2e-05 Score=73.26 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=71.4
Q ss_pred CEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEEecc
Q 017080 124 SLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAISIA 187 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 187 (377)
++||-||.|.|..++. .+-.+++.|||++..++.+++. +++++.+|...+ .-...+||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 6999999999998764 4456999999999999999986 356777777663 22234899999864
Q ss_pred chh-----hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLH-----HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~-----h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.=. .+-+ ..+++.+++.|+++|+++...
T Consensus 158 tdp~gp~~~Lft----~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDPVGPAEALFT----EEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCcccccCC----HHHHHHHHHhcCCCcEEEEec
Confidence 322 1112 689999999999999998883
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-05 Score=76.68 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=74.3
Q ss_pred CCCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~~fD~V~~ 185 (377)
...+|.+|||+++|.|.= +.. .....++++|+++.-++..+++ ++.+...|...+. ...+.||.|++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 456889999999999983 222 3456999999999998888776 3455666766543 23467999994
Q ss_pred ----cc--chhhcCCh-------------HHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 186 ----IA--VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 186 ----~~--~l~h~~~~-------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
++ ++..-++. ..-.++|..+.+.|||||.|+.++-+...
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 42 33322210 00268899999999999999888766543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.9e-05 Score=72.52 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=69.0
Q ss_pred CCCEEEEECCccCccc----ccCC-CceEEEEeCCHHHHHHHHHc--CC---eE--EEeeCCCCCCCCCceeEEEeccch
Q 017080 122 SGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--GH---EV--LVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~-~~~v~gvD~s~~~~~~a~~~--~~---~~--~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.+|||+|||+|..+ ...+ -.+++++|.|+.|++.++.- .. .. ...+...-..+-...|+|++.++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 3469999999999842 2233 34899999999999988765 10 00 000111000111233999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
..+++ +....+++.+.+.+.+ .|+|.++.....
T Consensus 113 ~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 113 NELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 99999 5588999999888876 888888765543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.8e-06 Score=76.69 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=73.7
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC-C--C
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P--Y 175 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~-~--~ 175 (377)
+....++.....+.+|||+=|=||.++- ...|+ +|+.||.|..++++++++ .++|+..|+.+. . -
T Consensus 112 R~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 112 RENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp HHHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred HhhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 3344444444578999999999999863 34555 899999999999999987 357888888763 1 1
Q ss_pred CCCceeEEEec------cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 176 RSDFGDAAISI------AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 176 ~~~~fD~V~~~------~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..++||+||+- ....- ..+...++..+.++|+|||.++++.-+
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~---~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDL---ERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEH---HHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred cCCCCCEEEECCCCCCCCHHHH---HHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 24689999982 11111 122678999999999999998877543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.9e-05 Score=69.97 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=63.5
Q ss_pred HHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
....+.++..|||+.||-|.|+- ..+...|+++|++|..++..+++ .+..+.+|+..+.. .+.||-|
T Consensus 95 i~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 95 IANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp HHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred HHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 33446789999999999999852 25677999999999999888876 36778999988754 7899999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
++...- . -..+|..+.+.+++||++-
T Consensus 174 im~lp~----~---~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPE----S---SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TS----S---GGGGHHHHHHHEEEEEEEE
T ss_pred EECChH----H---HHHHHHHHHHHhcCCcEEE
Confidence 886421 1 2467888999999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=4e-05 Score=70.68 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=66.3
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+.+++||=||+|.|..++. ++. +|+-||+++.+++.+++. +++++. .+.+ ...++||+|++-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEEEEc
Confidence 4568999999999998764 554 999999999999999984 233333 1111 124789999987
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. . ...+.+.+++.|+|||.++...
T Consensus 147 s~----~----~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----P----DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----C----ChHHHHHHHHhcCCCcEEEECC
Confidence 43 2 3578899999999999998864
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.4e-05 Score=75.64 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhCcccccccccchHHHHHHH-hCCCCCC-EEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcC
Q 017080 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFL-NSLPSGS-LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRG 162 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l-~~~~~~~-~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~ 162 (377)
..||+..|.... .-.-.++..+..+...+ ..+.+-. ++|-+|||+-.+... .....|+.+|+|+..++....++
T Consensus 13 ~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~ 91 (482)
T KOG2352|consen 13 VVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRN 91 (482)
T ss_pred chhhhhhccccC-CChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcc
Confidence 456666654443 11112344444433333 2344555 999999999987642 33348999999999998877663
Q ss_pred ------CeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH-------HHHHHHHHHHccccCcEEEEEEc
Q 017080 163 ------HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-------RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 163 ------~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~-------~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..+...|+..+.|++++||+|+..+.++++-.+++ ....+.+++|+|+|||+.+....
T Consensus 92 ~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 92 AKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 67889999999999999999999999999754332 34678999999999999887765
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.7e-05 Score=63.79 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=65.6
Q ss_pred CCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHH----HHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 123 GSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKI----CVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~----a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
..-+||||||+|..+. ..+...+.++|++|.+++. |+.+ ++..++.|+..- +..++.|+++.+--.--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 5689999999998542 3688899999999999866 4444 356677777652 23478888776432111
Q ss_pred cCChH------------------HHHHHHHHHHHccccCcEEEEEEcC
Q 017080 192 LSTES------------------RRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 192 ~~~~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
-++.+ -..+++..+-..|.|.|++++....
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 11100 0345666677788899999887643
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.5e-05 Score=74.53 Aligned_cols=89 Identities=21% Similarity=0.149 Sum_probs=68.0
Q ss_pred CCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 123 GSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
+.+|||++||+|.++-. .+...|+++|+++.+++.++++ ++.+..+|+..+....+.||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999997532 3334899999999999999876 24578888866421146799999853 2
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.. +..++....+.+++||+++++
T Consensus 135 -Gs---~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS---PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC---cHHHHHHHHHHhcCCCEEEEE
Confidence 23 457888878889999999998
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.1e-05 Score=72.12 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=49.2
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc---C------CeEEE-eeCCCCC----CCCCceeEE
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---G------HEVLV-ADAVNLP----YRSDFGDAA 183 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~---~------~~~~~-~d~~~~~----~~~~~fD~V 183 (377)
++.+|||||||+|... ...++++++|+|+++.+++.|+.+ + +.+.. .|...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999998542 346688999999999999999976 2 23332 2332221 246789999
Q ss_pred Eeccchh
Q 017080 184 ISIAVLH 190 (377)
Q Consensus 184 ~~~~~l~ 190 (377)
+|+=-++
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9986654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.7e-06 Score=72.90 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------C--CC--CCceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------P--YR--SDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~------~--~~--~~~fD~V~~~ 186 (377)
++.+|||+||++|.|+.. .+...|+|+|+.+... ..++.++.+|+.+. . +. .+.||+|+|-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 348999999999998753 2458999999988611 12344445554331 1 11 2689999998
Q ss_pred cchhhc--------CChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 187 AVLHHL--------STESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 187 ~~l~h~--------~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
...... ...+.....+.-+...|+|||.+++-.+...
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 732211 1111134556666678999999999877643
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.1e-05 Score=71.15 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCCCEEEEECCccCccccc---CC-CceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCC-ceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NP-DCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSD-FGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~-~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~-~fD~V 183 (377)
+.+.+||=||.|.|..++. ++ ..+++.||+++..++.|++. +++++.+|+..+ .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3578999999999987642 33 56999999999999999874 467888888653 22234 89999
Q ss_pred EeccchhhcCChH-HHHHHHHHHHHccccCcEEEEEEc
Q 017080 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 184 ~~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+.-..-...+... --..+++.+.+.|+|||++++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 9843321111100 015899999999999999998763
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.4e-05 Score=70.03 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=73.7
Q ss_pred CCCCCEEEEECCccCccccc---CCC-ceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCCC-CCCCce
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLP-YRSDFG 180 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~-~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~~~-~~~~~f 180 (377)
++...+||-+|.|.|.-+++ +|+ .+++-+|++|.|++.++.+ +++++..|+.++- -..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34557999999999997753 784 4999999999999999854 3678888887752 335689
Q ss_pred eEEEecc------chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 181 DAAISIA------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 181 D~V~~~~------~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|.||.-. ++.-+-+ ..+..-+.|.|+++|.+++.--
T Consensus 367 D~vIVDl~DP~tps~~rlYS----~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYS----VEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhhh----HHHHHHHHHhcCcCceEEEecC
Confidence 9998742 2222222 5788889999999999998753
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.4e-05 Score=69.60 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCEEEEECCccCccc---ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~---~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.++.|||+|||.|.+. ......+|++++. .+|.+.|++. ++.++.+-+++..+| ++.|+||+--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 5789999999999964 3344459999996 5677888764 467788888887764 4579999865444
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
-+-+ ++..+..-..++.|||.|.++=.
T Consensus 255 mL~N-ERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 255 MLVN-ERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhh-HHHHHHHHHHHhhcCCCCcccCc
Confidence 4444 44556666778999999987654
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=70.12 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=68.9
Q ss_pred hCCCCCCEEEEECCccCccccc-----------CCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCC-
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL-----------NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYR- 176 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~-----------~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~- 176 (377)
....++.+|||-+||+|.++.. .....++|+|+++.++..|+-+ ...+..+|....+..
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence 3456677999999999998532 2677999999999999888754 235777787654432
Q ss_pred -CCceeEEEeccchhhc--C----------------ChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 -SDFGDAAISIAVLHHL--S----------------TESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 -~~~fD~V~~~~~l~h~--~----------------~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
...||+|+++=.+.-. . ....-..++..+.+.|++||++.+..+.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 4789999996433322 0 0011236889999999999998888754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00021 Score=63.73 Aligned_cols=90 Identities=21% Similarity=0.098 Sum_probs=68.0
Q ss_pred CCEEEEECCccCcc----cccCCCceEEEEeCCHHHHHHHH---Hc----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 123 GSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 123 ~~~vLDiGcG~G~~----~~~~~~~~v~gvD~s~~~~~~a~---~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
+.+++|||+|.|.- +-..|+.+|+-+|....-+..-+ .. |++++.+.++++.-....||+|+++.+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999982 33588889999999886554433 33 68899999998753212299999987643
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...++.-+...+|+||.+++.-
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhhh
Confidence 6677888889999999876543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.3e-05 Score=71.21 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=65.6
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
+.+|.++|||||++|.|+.. ..++.|++||.++-........+|..+..|...+..+.+.+|.++|-.+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------- 281 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------- 281 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC-------
Confidence 46889999999999999853 567799999977644444444468888888766543367899999987643
Q ss_pred HHHHHHHHHHccccC
Q 017080 198 RKKAIEELVRVVKKG 212 (377)
Q Consensus 198 ~~~~l~~~~r~Lkpg 212 (377)
|.++.+-+.+.|..|
T Consensus 282 P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 PARVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHHHhcC
Confidence 778888888888766
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=63.30 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=75.3
Q ss_pred CCCCEEEEECCccCccc---ccCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCC-C-CCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-L-PYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~---~~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~-~-~~~~~~fD~V~~~~~l 189 (377)
.+|.|||.||-|-|... +..+-.+-+-++..|..++..+.. ++..+.+--++ + .++++.||-|+--.--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 57889999999999854 446666778899999999988876 56566555444 2 2679999999886655
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|..+ ...+.+.+.|+|||+|++-+..
T Consensus 180 e~yEd---l~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELYED---LRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHHHH---HHHHHHHHhhhcCCCceEEEec
Confidence 76666 8899999999999999876654
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00045 Score=61.52 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=75.3
Q ss_pred HHHHHhCCCCCCEEEEECCccCccc-----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-C-----
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-L----- 173 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~-----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~----- 173 (377)
+...+..+-.++++||||.=||.-+ ..-++.+|+++|+++...+++.+. .++++++++.+ +
T Consensus 64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~ 143 (237)
T KOG1663|consen 64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA 143 (237)
T ss_pred HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh
Confidence 3333334556789999999999832 235678999999999998888654 47888888765 2
Q ss_pred CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 174 ~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....++||+++.- |..+. ....+.++.+++|+||+|++-.
T Consensus 144 ~~~~~tfDfaFvD----adK~n--Y~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 DGESGTFDFAFVD----ADKDN--YSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred cCCCCceeEEEEc----cchHH--HHHHHHHHHhhcccccEEEEec
Confidence 1346899999874 44443 4588999999999999988864
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00021 Score=65.61 Aligned_cols=137 Identities=20% Similarity=0.184 Sum_probs=80.5
Q ss_pred CEEEEECCccCcc------c-ccCCCceEEEEeCCHHHHHHHHHc-----C--CeEEEeeCCCCC--CC----CCcee--
Q 017080 124 SLVLDAGCGNGKY------L-GLNPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP--YR----SDFGD-- 181 (377)
Q Consensus 124 ~~vLDiGcG~G~~------~-~~~~~~~v~gvD~s~~~~~~a~~~-----~--~~~~~~d~~~~~--~~----~~~fD-- 181 (377)
...||||||--.- + +..|+++|+-+|..|..+..++.. + ..++.+|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 6899999996431 1 138999999999999999888765 3 568999998731 11 12233
Q ss_pred ---EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCC
Q 017080 182 ---AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258 (377)
Q Consensus 182 ---~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 258 (377)
.+++..++||++|++++..+++.++..|.||.+|.|+..+.+...... ......+.. ........
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~---------~~~~~~~~~---~~~~~~~R 217 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERA---------EALEAVYAQ---AGSPGRPR 217 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHH---------HHHHHHHHH---CCS----B
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHH---------HHHHHHHHc---CCCCceec
Confidence 678889999999977799999999999999999999987654221110 111111111 12234566
Q ss_pred CcccHHhHhhcCCCcc
Q 017080 259 TLESIPETEDNGSEEQ 274 (377)
Q Consensus 259 ~~~~l~~~l~~aGF~~ 274 (377)
+.+++.+++. ||+.
T Consensus 218 s~~ei~~~f~--g~el 231 (267)
T PF04672_consen 218 SREEIAAFFD--GLEL 231 (267)
T ss_dssp -HHHHHHCCT--TSEE
T ss_pred CHHHHHHHcC--CCcc
Confidence 7788888887 8855
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.72 E-value=7e-05 Score=64.29 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=69.4
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC--------CCCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL--------PYRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-d~~~~--------~~~~~~fD~V~ 184 (377)
-+.|+.+|||+||..|.|++. .|...|.|||+-. .....|+.++.+ |+.+. .++....|+|+
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl 141 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVL 141 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEE
Confidence 467899999999999999752 6899999999833 333446666666 66552 24577899999
Q ss_pred eccc--------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 185 SIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 185 ~~~~--------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
+-+. ..|...-+.-..++.-....++|+|.+++-.|....
T Consensus 142 SDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 142 SDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred eccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 8543 222222111223444455677899999999998653
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0007 Score=60.24 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCH----HHHHHHHHc-CCeEEEeeCCCCC-C--CCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP-Y--RSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~----~~~~~a~~~-~~~~~~~d~~~~~-~--~~~~fD~V~~ 185 (377)
.+.+|.+||-+|..+|... .. .+...|++|+.|+ ..+..|+++ |+--+..|+.... + --+..|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 4678999999999999854 22 6788999999999 456777777 6777888987632 1 1258999998
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
--. .+++.+-++.++...||+||.+++..-
T Consensus 150 DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 150 DVA-----QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp E-S-----STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC-----ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 533 223367888999999999999999863
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00019 Score=69.63 Aligned_cols=88 Identities=9% Similarity=0.072 Sum_probs=59.2
Q ss_pred CEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC----------C------C
Q 017080 124 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR----------S------D 178 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~----------~------~ 178 (377)
.+|||++||+|.++-. .....|+|+|+|+.+++.++++ +++++.+|+.++.-. . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 4799999999997532 1124899999999999999986 467899998763210 1 1
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.||+|+.-=- . -.- ...+++.+. +|++.++++.
T Consensus 279 ~~d~v~lDPP-R-~G~---~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 279 NCSTIFVDPP-R-AGL---DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred CCCEEEECCC-C-CCC---cHHHHHHHH---cCCcEEEEEc
Confidence 3798887322 0 000 134445444 4788888886
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00013 Score=64.92 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=61.9
Q ss_pred ccccccccchHHHHHHHhCCCCCCEEEEECCccCccc---ccCCCc-eEEEEeCCHHHHHHHHHc---------------
Q 017080 101 HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL---GLNPDC-FFVGCDISPSLIKICVDR--------------- 161 (377)
Q Consensus 101 ~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~---~~~~~~-~v~gvD~s~~~~~~a~~~--------------- 161 (377)
.|.+..+....++.+.+ .+.++...+|||||.|... ....++ ..+||++.+...+.|...
T Consensus 22 ~YGEi~~~~~~~il~~~-~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~ 100 (205)
T PF08123_consen 22 TYGEISPEFVSKILDEL-NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP 100 (205)
T ss_dssp CGGGCHHHHHHHHHHHT-T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB--
T ss_pred ceeecCHHHHHHHHHHh-CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34333333344444433 4678899999999999963 223344 599999999987766542
Q ss_pred -CCeEEEeeCCCCCCCC---CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 162 -GHEVLVADAVNLPYRS---DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 162 -~~~~~~~d~~~~~~~~---~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.+.+..+|+.+.++.. ..-|+|+++..+- +++ ....|.++...||||-+++
T Consensus 101 ~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F---~~~-l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 101 GKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF---DPD-LNLALAELLLELKPGARII 155 (205)
T ss_dssp -EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----HH-HHHHHHHHHTTS-TT-EEE
T ss_pred ccceeeccCccccHhHhhhhcCCCEEEEecccc---CHH-HHHHHHHHHhcCCCCCEEE
Confidence 2456677766533111 3459999988653 222 6677788888899886654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0002 Score=69.71 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=60.8
Q ss_pred CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C-CC--------------C
Q 017080 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YR--------------S 177 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~-~~--------------~ 177 (377)
+.+|||++||+|.++.. ....+|+|+|+|+.+++.++++ +++++.+|+.++ + +. .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 35799999999997532 2234899999999999999876 467899998763 1 10 1
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+||+|+.-=-=.-+ ...+++.+.+ |++.++++.
T Consensus 287 ~~~D~v~lDPPR~G~-----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 287 YNFSTIFVDPPRAGL-----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCCCEEEECCCCCCC-----cHHHHHHHHc---cCCEEEEEe
Confidence 258999884221001 2345555544 788888886
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.45 E-value=8.7e-05 Score=65.03 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CC---CCCCceeEEEe
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVN-LP---YRSDFGDAAIS 185 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~---~~~~~fD~V~~ 185 (377)
-+|.++||+-||+|.+.- ...|+ .|+.||.++..+...+++ .+.++..|+.. ++ ....+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 368899999999999753 34554 999999999999998887 25677777644 21 24689999998
Q ss_pred ccchhhcCChHHHHHHHHHHH--HccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~--r~LkpgG~l~i~~~~ 221 (377)
-=-... .. . ...++..+. .+|+++|.+++....
T Consensus 121 DPPY~~-~~-~-~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYAK-GL-Y-YEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STTS-CH-H-HHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCccc-ch-H-HHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 533221 11 0 256777776 789999999887644
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00083 Score=64.09 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=79.2
Q ss_pred HHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-------C-CeEEEeeCCCCCCCCCceeEEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-------~-~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
......+|.+|||+=+|-|.|+-- +....|+++|++|.+++..+++ + +..+.+|+.......+.+|-|+
T Consensus 182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred HHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE
Confidence 334456799999999999998632 3333499999999999998887 2 6789999998765558899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+...- + -..++....+.+++||.+-+.....+
T Consensus 262 m~~p~----~---a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 262 MGLPK----S---AHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred eCCCC----c---chhhHHHHHHHhhcCcEEEEEeccch
Confidence 97533 3 45788888899999999999887654
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=62.98 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=77.1
Q ss_pred HHHHHhCCCCCCEEEEECCccCc----cccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCC
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGK----YLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRS 177 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~----~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~ 177 (377)
+...+....+|.+|||+.++.|. ++.. ..+..|+++|.|+.-++..+.+ ++.....|...++ .+.
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 33444566789999999999987 2233 3456789999999988777776 3456777776543 222
Q ss_pred -CceeEEEe------ccchhhcCC------hH-------HHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 178 -DFGDAAIS------IAVLHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 178 -~~fD~V~~------~~~l~h~~~------~~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
++||.|++ .+++.-=|+ .+ ...++|....+.|||||.|+.++-+...
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 35999987 334421121 11 1357899999999999999999766543
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00039 Score=63.78 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=58.3
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCC-ceeEEEeccchhh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSD-FGDAAISIAVLHH 191 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~-~fD~V~~~~~l~h 191 (377)
+.++..|||||+|.|.++.. ..+..|+++++++.+++..++. +++++.+|+...+++.- .++.|+++-- ++
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP-Y~ 106 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLP-YN 106 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCC-Cc
Confidence 45588999999999999864 5667899999999999888876 58899999999877653 5677777543 33
Q ss_pred cCC
Q 017080 192 LST 194 (377)
Q Consensus 192 ~~~ 194 (377)
+..
T Consensus 107 Iss 109 (259)
T COG0030 107 ISS 109 (259)
T ss_pred ccH
Confidence 544
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00038 Score=63.32 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=55.7
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.++++..|||||.|||.++.. ..+..|+++++++.|+....++ .++++.+|+...++ -.||.++++-
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~fd~cVsNl 131 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRFDGCVSNL 131 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--cccceeeccC
Confidence 467889999999999998754 6788999999999999888876 36789999987653 4689998853
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=69.09 Aligned_cols=78 Identities=23% Similarity=0.201 Sum_probs=54.7
Q ss_pred eEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCCCCC--CCceeEEEeccchhh-cCChHHHHHHHHHHHHccc--
Q 017080 144 FFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYR--SDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVK-- 210 (377)
Q Consensus 144 ~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~~~--~~~fD~V~~~~~l~h-~~~~~~~~~~l~~~~r~Lk-- 210 (377)
.++|+|+++.+++.|+.+ + +.+.++|+.+++.+ .++||+|+++=-... +.+..+...+.+++.+.+|
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 699999999999999988 2 57889999887643 357999999854432 3332224455555555544
Q ss_pred -cCcEEEEEEcC
Q 017080 211 -KGSLVLITVWA 221 (377)
Q Consensus 211 -pgG~l~i~~~~ 221 (377)
||+.+++.+..
T Consensus 338 ~~g~~~~llt~~ 349 (702)
T PRK11783 338 FGGWNAALFSSS 349 (702)
T ss_pred CCCCeEEEEeCC
Confidence 89888777643
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00035 Score=65.67 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=56.1
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccc----cC-CCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC--CCC
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP--YRS 177 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~-~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~ 177 (377)
..++++.+. +.++..+||.+||.|..+. .. +...|+|+|.++.+++.++++ ++.++.+|+.++. .++
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 345555554 3567899999999999653 23 368999999999999999875 4777888877643 112
Q ss_pred C--ceeEEEecc
Q 017080 178 D--FGDAAISIA 187 (377)
Q Consensus 178 ~--~fD~V~~~~ 187 (377)
+ ++|.|++..
T Consensus 87 ~~~~vDgIl~DL 98 (296)
T PRK00050 87 GLGKVDGILLDL 98 (296)
T ss_pred CCCccCEEEECC
Confidence 2 688887754
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.001 Score=64.73 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCEEEEECCccCcccc----cCCC-ceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCceeEEEeccch
Q 017080 123 GSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAISIAVL 189 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~~fD~V~~~~~l 189 (377)
+.+|||+.||+|...- ..++ ..|+++|+++.+++.++++ ++.+...|+..+- ...+.||+|..-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3589999999999752 2234 4899999999999999887 2567778877642 2236799998843 3
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. +..++..+.+.+++||.+.++.
T Consensus 124 ---Gs---~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GT---PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CC---cHHHHHHHHHhcccCCEEEEEe
Confidence 23 4579999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=60.18 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCEEEEECCccCccc-----cc-CCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 123 GSLVLDAGCGNGKYL-----GL-NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~-----~~-~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
+.+|+=||||.==++ .. .++..|+++|+++.+.+.+++- ++.|+.+|+.+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 369999999974432 22 4678999999999999888653 57899999987665457899999877
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...--..+ ..++|.++.+.++||..+++-.
T Consensus 201 lVg~~~e~--K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEP--KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----S--HHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccch--HHHHHHHHHhhCCCCcEEEEec
Confidence 66532222 6899999999999999888863
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00053 Score=58.99 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=70.9
Q ss_pred CEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 124 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
..+.|+|+|+|.++-. ...-+|++++.+|...+.|.++ +++++++|+.+..| ...|+|+|-..=..+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhc
Confidence 5899999999997632 3345999999999999999988 68889999998877 45699998654333434
Q ss_pred hHHHHHHHHHHHHccccCcEEEE
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
++ ...+++.+...||-++.++=
T Consensus 112 E~-qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 112 EK-QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cc-ccHHHHHHHHHhhcCCcccc
Confidence 33 56788888888888887654
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0036 Score=54.49 Aligned_cols=98 Identities=20% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCC--ceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSD--FGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~~~--~fD~V~~~ 186 (377)
-.|.++||+=+|+|.+.- ...++ .++.||.+.......+++ +..++..|+... +-... +||+|+.-
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 368899999999999753 35555 999999999999999887 466778888742 21222 49999996
Q ss_pred cchhh-cCChHHHHHHHHH--HHHccccCcEEEEEEcC
Q 017080 187 AVLHH-LSTESRRKKAIEE--LVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h-~~~~~~~~~~l~~--~~r~LkpgG~l~i~~~~ 221 (377)
=-.+. +.+ ....+.. -..+|+|+|.+++....
T Consensus 122 PPy~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLD---KELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 55541 211 2333333 45779999999987543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0017 Score=54.28 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCCCEEEEECCccCcccc---c-----CCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeE
Q 017080 121 PSGSLVLDAGCGNGKYLG---L-----NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~-----~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
.+..+|+|+|||.|.++. . .++.+|+|+|.++..++.+..+ ++.+..++....+ .....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCeE
Confidence 567899999999999643 2 4788999999999998887765 2333444333321 2456688
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
++..++..-+.+ .+|+...+ |+-..++.
T Consensus 103 ~vgLHaCG~Ls~-----~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 103 LVGLHACGDLSD-----RALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEeecccchHH-----HHHHHHHH---cCCCEEEE
Confidence 888776665554 56666555 55444443
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0036 Score=54.32 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=80.9
Q ss_pred hCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHH----------HHHHHHHc---CCeEEEeeCCCCCCCCCc
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS----------LIKICVDR---GHEVLVADAVNLPYRSDF 179 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~----------~~~~a~~~---~~~~~~~d~~~~~~~~~~ 179 (377)
..+++|++|+|+=-|.|.|++. .|...|+++=+.+. +-..+++. |++.+-.+...+. +.+.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 3578999999999999998764 45557777655443 12222222 4444444444444 3444
Q ss_pred eeEEEeccchhhcCC----hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCC
Q 017080 180 GDAAISIAVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSP 255 (377)
Q Consensus 180 fD~V~~~~~l~h~~~----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 255 (377)
.|+++....-|-+.. .....++.+.+++.|||||.+++.+........ .......
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~---------------------~~dt~~~ 181 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG---------------------LSDTITL 181 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC---------------------hhhhhhh
Confidence 566655332221110 111678999999999999999998744321100 0011123
Q ss_pred CCCCcccHHhHhhcCCCcc
Q 017080 256 SARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 256 ~~~~~~~l~~~l~~aGF~~ 274 (377)
+..+.....+..+.+||+-
T Consensus 182 ~ri~~a~V~a~veaaGFkl 200 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKL 200 (238)
T ss_pred cccChHHHHHHHHhhccee
Confidence 4456677889999999955
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0084 Score=54.76 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=75.3
Q ss_pred HHhCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCC--CCce
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR--SDFG 180 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~--~~~f 180 (377)
.+..+.||.+|||-|+|.|.++- ..|-.+++-+|.-....+.|.+. ++.+..-|+....|. +..+
T Consensus 99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~a 178 (314)
T KOG2915|consen 99 SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKA 178 (314)
T ss_pred HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccccc
Confidence 33457899999999999999752 37888999999988777777664 688899999886543 5678
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcE-EEEEEcCC
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL-VLITVWAV 222 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~-l~i~~~~~ 222 (377)
|.|+.- ++. |-.++-.++.+||.+|. +.-..+..
T Consensus 179 DaVFLD-----lPa---Pw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 179 DAVFLD-----LPA---PWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ceEEEc-----CCC---hhhhhhhhHHHhhhcCceEEeccHHH
Confidence 998874 666 67788888889998874 44434443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0082 Score=52.51 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHH----HHHHHHc-CCeEEEeeCCCCC---CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSL----IKICVDR-GHEVLVADAVNLP---YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~----~~~a~~~-~~~~~~~d~~~~~---~~~~~fD~V~~~ 186 (377)
++.+|.+||=+|..+|... ...+...+++|+.|+.. +..|.++ |+--+..|+.... .-=+..|+|+.-
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence 4678999999999999854 33557799999999965 4666666 6777888887632 112568988874
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+..+++..-+..++...||+||.++++.-
T Consensus 153 -----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 153 -----VAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred -----cCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 33344467888999999999998888753
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00068 Score=66.98 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=67.8
Q ss_pred CEEEEECCccCcccccCCC--c---eEEEEeCCHHHHHHHHHcCCe-EEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 124 SLVLDAGCGNGKYLGLNPD--C---FFVGCDISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~~~~--~---~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
..|+|+.+|.|.|++.... . .|+-+ ..+..+...-++|+- .+..=.+.++..+.+||+|++.+++.+..+.-+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~ 445 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCE 445 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhccccc
Confidence 5899999999999865222 2 23333 233344444445422 222223446777899999999999998877666
Q ss_pred HHHHHHHHHHccccCcEEEEEE
Q 017080 198 RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...+|-|+-|+|+|||.++|.+
T Consensus 446 ~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 446 MEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred HHHHHHHhHhhcCCCceEEEec
Confidence 8999999999999999999975
|
; GO: 0008168 methyltransferase activity |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0041 Score=57.87 Aligned_cols=163 Identities=12% Similarity=0.098 Sum_probs=98.3
Q ss_pred HHHHHHHhhCcccccccccchHHHHHHHhCCCC-------CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHH---
Q 017080 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKI--- 157 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~-------~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~--- 157 (377)
.++.++.++...+...|....+.++..+..+-| ..+||--|||.|+++-. -.|..+-|-+.|--|+-.
T Consensus 111 ~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 111 TLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSF 190 (369)
T ss_pred HHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 455666666666666777777777777765432 35899999999997531 233444455665555321
Q ss_pred ----HHHc----------------------------------------CCeEEEeeCCCC---CCCCCceeEEEeccchh
Q 017080 158 ----CVDR----------------------------------------GHEVLVADAVNL---PYRSDFGDAAISIAVLH 190 (377)
Q Consensus 158 ----a~~~----------------------------------------~~~~~~~d~~~~---~~~~~~fD~V~~~~~l~ 190 (377)
++.. ....-.+|+.+. +-..++||+|+..+.+.
T Consensus 191 iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID 270 (369)
T KOG2798|consen 191 ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID 270 (369)
T ss_pred HHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee
Confidence 1111 011122343331 11235799999987766
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
--.+ ....|+.+..+|||||..+-.-+...+-.. ...-.....-.++.+++..+.+.-
T Consensus 271 Ta~N---ileYi~tI~~iLk~GGvWiNlGPLlYHF~d-------------------~~g~~~~~siEls~edl~~v~~~~ 328 (369)
T KOG2798|consen 271 TAHN---ILEYIDTIYKILKPGGVWINLGPLLYHFED-------------------THGVENEMSIELSLEDLKRVASHR 328 (369)
T ss_pred chHH---HHHHHHHHHHhccCCcEEEeccceeeeccC-------------------CCCCcccccccccHHHHHHHHHhc
Confidence 5555 889999999999999986654332211000 000011113356778899999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||++
T Consensus 329 GF~~ 332 (369)
T KOG2798|consen 329 GFEV 332 (369)
T ss_pred CcEE
Confidence 9988
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0035 Score=64.14 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=44.3
Q ss_pred CCCEEEEECCccCccccc----C------C--CceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-----CCC
Q 017080 122 SGSLVLDAGCGNGKYLGL----N------P--DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-----YRS 177 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~------~--~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-----~~~ 177 (377)
...+|||.|||+|.++.. . . ...++|+|+++..+..++.+ +..+...|..... -..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 346999999999997521 1 1 25899999999999988765 2334444433211 112
Q ss_pred CceeEEEecc
Q 017080 178 DFGDAAISIA 187 (377)
Q Consensus 178 ~~fD~V~~~~ 187 (377)
+.||+|+++=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 5799999963
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0055 Score=54.62 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=57.8
Q ss_pred EEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCC-ceeEEEeccchhhc
Q 017080 126 VLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD-FGDAAISIAVLHHL 192 (377)
Q Consensus 126 vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~-~fD~V~~~~~l~h~ 192 (377)
|.||||-.|.+.. ......++++|+++.-++.|+++ .+.+..+|.... ++.+ ..|.|+..++-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHHH
Confidence 6899999999643 24445899999999999999987 377888886552 2333 37998888876643
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
...+|.+....++..-.+++.
T Consensus 80 -----I~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 80 -----IIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp -----HHHHHHHTGGGGTT--EEEEE
T ss_pred -----HHHHHHhhHHHhccCCeEEEe
Confidence 557788777777665566665
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0066 Score=56.36 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=62.5
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC---CceeEEEeccch
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS---DFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~---~~fD~V~~~~~l 189 (377)
+.++..|||||.|+|.++.. ..+.+++++|+++.+.+..+++ +++++.+|+..+..+. +....|+++-..
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 44788999999999998764 3338999999999999998884 6889999999987554 345666665433
Q ss_pred hhcCChHHHHHHHHHHHHcccc
Q 017080 190 HHLSTESRRKKAIEELVRVVKK 211 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~Lkp 211 (377)
++. ..++.++...-+.
T Consensus 108 -~is-----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 108 -NIS-----SPILRKLLELYRF 123 (262)
T ss_dssp -TGH-----HHHHHHHHHHGGG
T ss_pred -cch-----HHHHHHHhhcccc
Confidence 332 3667777664344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.012 Score=52.82 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHcCCeE---EEeeCCCCC---CCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHEV---LVADAVNLP---YRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~~~~~---~~~d~~~~~---~~~~~fD~V~~~~~l~ 190 (377)
..++..+||||+.||.|+.. ..+ .+|+++|....++.+--+.+-++ ...|+..+. + .+..|++++--.+.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~DvSFI 155 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TEKPDLIVIDVSFI 155 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-ccCCCeEEEEeehh
Confidence 35789999999999999863 444 49999999999988766654333 334444432 2 23678999876665
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ...+|..+..+++|+|.++.-.
T Consensus 156 S------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 156 S------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred h------HHHHHHHHHHhcCCCceEEEEe
Confidence 3 5679999999999999877765
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0074 Score=56.66 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=72.9
Q ss_pred hCCCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C-CCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~-~~~~~fD~V 183 (377)
....++.+|||+.+|.|.= +.. .....+++.|+++.-+...+++ ++.....|.... + .....||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 3457889999999999972 222 4467999999999988777765 344455566554 1 234469999
Q ss_pred Ee------ccchhhcCChH-------------HHHHHHHHHHHcc----ccCcEEEEEEcCC
Q 017080 184 IS------IAVLHHLSTES-------------RRKKAIEELVRVV----KKGSLVLITVWAV 222 (377)
Q Consensus 184 ~~------~~~l~h~~~~~-------------~~~~~l~~~~r~L----kpgG~l~i~~~~~ 222 (377)
+. .+++..-++.. .-.++|+.+.+.+ ||||+++.++-+.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 88 22333333211 0357899999999 9999999987554
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0044 Score=58.42 Aligned_cols=102 Identities=25% Similarity=0.278 Sum_probs=66.5
Q ss_pred CCEEEEECCccCccc--c--cCCCc-eEEEEeCCHHHHHHHHHc--CCeE---------EEeeCCCCCCCCCceeEEEec
Q 017080 123 GSLVLDAGCGNGKYL--G--LNPDC-FFVGCDISPSLIKICVDR--GHEV---------LVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~--~--~~~~~-~v~gvD~s~~~~~~a~~~--~~~~---------~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++|||+|.|.|.-+ . ..|.. .++-++.|+..-+....- ++.. ++.|-..+| +...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp-~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP-AADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC-ccceeehhhhh
Confidence 467999999988743 2 25654 677778888765554332 2211 222222233 24567877777
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
.-|-|..++......++.+...+.|||.++|.+......
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 766666654435568999999999999999998765543
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.018 Score=56.09 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCEEEEECCccCccc------------c-------cCCCceEEEEeCCHHHHHH----H---HH-----------cC-Ce
Q 017080 123 GSLVLDAGCGNGKYL------------G-------LNPDCFFVGCDISPSLIKI----C---VD-----------RG-HE 164 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~------------~-------~~~~~~v~gvD~s~~~~~~----a---~~-----------~~-~~ 164 (377)
..+|+|+|||+|..+ . ..|..+|..-|+-.+-... . ++ .+ -.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999742 0 1246788888875431111 0 00 00 01
Q ss_pred EEE----eeCCCCCCCCCceeEEEeccchhhcCCh-----------------------------------HHHHHHHHHH
Q 017080 165 VLV----ADAVNLPYRSDFGDAAISIAVLHHLSTE-----------------------------------SRRKKAIEEL 205 (377)
Q Consensus 165 ~~~----~d~~~~~~~~~~fD~V~~~~~l~h~~~~-----------------------------------~~~~~~l~~~ 205 (377)
++. +.+..--||.++.+++++...+||+... .++..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2333334789999999999999998731 0144556666
Q ss_pred HHccccCcEEEEEEcCCC
Q 017080 206 VRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 206 ~r~LkpgG~l~i~~~~~~ 223 (377)
++-|.|||.+++......
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 778899999999976654
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0089 Score=49.63 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=53.5
Q ss_pred eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCceeEEEeccchhhcCC--------hHHHHHHHHHH
Q 017080 144 FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLST--------ESRRKKAIEEL 205 (377)
Q Consensus 144 ~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~fD~V~~~~~l~h~~~--------~~~~~~~l~~~ 205 (377)
+|+|+|+-+.+++..+++ +++++..+-+++. .+.+++|+++.+ |.++|. .+.-..+|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999998887 4778887777764 233589988775 455553 22256889999
Q ss_pred HHccccCcEEEEEEcCC
Q 017080 206 VRVVKKGSLVLITVWAV 222 (377)
Q Consensus 206 ~r~LkpgG~l~i~~~~~ 222 (377)
.++|+|||.+.+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999988764
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0084 Score=59.51 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=67.2
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCceeEEEeccc
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISIAV 188 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---~~~fD~V~~~~~ 188 (377)
.++.+|||+=||.|.|.-. ....+|+|+|+++.+++.|+++ |+.|..++++.+... ...+|.|+..=-
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 4667999999999998643 4667999999999999999887 678999999886422 357899988311
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
=--+ -..+++.+.+ ++|-.++++++
T Consensus 372 R~G~-----~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 372 RAGA-----DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCCC-----CHHHHHHHHh-cCCCcEEEEeC
Confidence 0000 1245555544 56777888886
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.029 Score=51.03 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=67.1
Q ss_pred hHHHHHHHh-CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCC
Q 017080 110 WPKVATFLN-SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSD 178 (377)
Q Consensus 110 ~~~~~~~l~-~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~ 178 (377)
...+...+. .+++..+|+|||||.-=++ ...++..++|+|++..+++..... ..++...|+..-+ +..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~ 170 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKE 170 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTS
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCC
Confidence 334444443 4566789999999987653 346778999999999999887765 4566777877643 467
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..|+.+..=+++.+.... . ..--++...++- =.++++.+.
T Consensus 171 ~~DlaLllK~lp~le~q~-~-g~g~~ll~~~~~-~~~vVSfPt 210 (251)
T PF07091_consen 171 PADLALLLKTLPCLERQR-R-GAGLELLDALRS-PHVVVSFPT 210 (251)
T ss_dssp EESEEEEET-HHHHHHHS-T-THHHHHHHHSCE-SEEEEEEES
T ss_pred CcchhhHHHHHHHHHHHh-c-chHHHHHHHhCC-CeEEEeccc
Confidence 789999999998876532 2 232333333432 256666654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.029 Score=54.17 Aligned_cols=102 Identities=25% Similarity=0.218 Sum_probs=69.6
Q ss_pred hCCCCCCEEEEECCccCccccc--------CCCc-----------------------------------eEEEEeCCHHH
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL--------NPDC-----------------------------------FFVGCDISPSL 154 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~--------~~~~-----------------------------------~v~gvD~s~~~ 154 (377)
+.-.++..++|-=||+|.++.. .||. .++|+|+++.+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 3445668999999999997421 2321 27799999999
Q ss_pred HHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchh-hcCChHH----HHHHHHHHHHccccCcEEEEEE
Q 017080 155 IKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESR----RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 155 ~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~-h~~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++.|+.| -+.|.++|+..++.+-+.+|+|||+=--. -+.+... ...+.+.+.+.++.-+..+++.
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999988 37899999999875447899999975332 1333211 2344445556666556666653
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0022 Score=54.87 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=40.9
Q ss_pred EEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCc-eeEEEe
Q 017080 125 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDF-GDAAIS 185 (377)
Q Consensus 125 ~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~-fD~V~~ 185 (377)
.|+|+.||.|..+-. ....+|+++|+++..++.++.+ ++.++.+|+.++. +.... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999986532 2355899999999999999987 4788899887642 22222 677776
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0098 Score=51.79 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=61.6
Q ss_pred CCCCEEEEECCccCcccc--c-CCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~-~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
-.|++|||+|+|.|..+. . .....|+..|+.|......+-+ + +.+...|.-. .+..||+++...++..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 358899999999998643 2 3334899999998877665544 3 4445555433 4678999999998764
Q ss_pred cCChHHHHHHHHHHHHccc-cCcEEEEEEc
Q 017080 192 LSTESRRKKAIEELVRVVK-KGSLVLITVW 220 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~Lk-pgG~l~i~~~ 220 (377)
-+- -.+++. +.+.|+ .|-.+++.++
T Consensus 155 ~~~---a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 HTE---ADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred chH---HHHHHH-HHHHHHhCCCEEEEeCC
Confidence 443 456777 444444 4444554444
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0016 Score=51.47 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=41.5
Q ss_pred EEECCccCcccc----c-CCC--ceEEEEeCCH---HHHHHHHHc----CCeEEEeeCCCC-C-CCCCceeEEEeccchh
Q 017080 127 LDAGCGNGKYLG----L-NPD--CFFVGCDISP---SLIKICVDR----GHEVLVADAVNL-P-YRSDFGDAAISIAVLH 190 (377)
Q Consensus 127 LDiGcG~G~~~~----~-~~~--~~v~gvD~s~---~~~~~a~~~----~~~~~~~d~~~~-~-~~~~~fD~V~~~~~l~ 190 (377)
||||+..|..+. . .+. .+++++|+.+ ...+..++. +++++.++..+. + ++.++||+|+.-..-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 689988887532 1 222 3799999999 444444432 578888887652 2 3367999999876311
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+. ....+..+.+.|+|||.+++-+
T Consensus 81 -~~~---~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 -YEA---VLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HHH---HHHHHHHHGGGEEEEEEEEEE-
T ss_pred -HHH---HHHHHHHHHHHcCCCeEEEEeC
Confidence 112 5678899999999999998864
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.013 Score=56.79 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=37.1
Q ss_pred EEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC
Q 017080 125 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL 173 (377)
Q Consensus 125 ~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~ 173 (377)
+|||+-||.|.++-. ....+|+|||+++.+++.|+.+ |++|+.++++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 899999999998642 4456999999999999999877 678888877553
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0094 Score=49.55 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=31.1
Q ss_pred EEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc
Q 017080 125 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 125 ~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+||||||.|.++. ..+..+++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 48999999999642 36677999999999999888776
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.029 Score=49.12 Aligned_cols=98 Identities=20% Similarity=0.354 Sum_probs=58.3
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCC-CC--CCCCce
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LP--YRSDFG 180 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~-~~--~~~~~f 180 (377)
..-.+.|||||-|.++ ..+|+..++|.+|-...-+..+++ |+.+...++.. +| |..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4457999999999865 358999999999877666665554 34445444433 22 112222
Q ss_pred eEEEeccchhhcCChHH-----HHHHHHHHHHccccCcEEEEEE
Q 017080 181 DAAISIAVLHHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+-++...-=-|+..... -..++.+..-+|++||.++..+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22111111112111000 1367888999999999998875
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0036 Score=52.70 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=65.6
Q ss_pred CCCEEEEECCccCcc----cc-cCCCceEEEEeCCHHHHHHHHHc---CC-------eEEEeeCCC--CCCCCCceeEEE
Q 017080 122 SGSLVLDAGCGNGKY----LG-LNPDCFFVGCDISPSLIKICVDR---GH-------EVLVADAVN--LPYRSDFGDAAI 184 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~----~~-~~~~~~v~gvD~s~~~~~~a~~~---~~-------~~~~~d~~~--~~~~~~~fD~V~ 184 (377)
.|.+|||+|.|--.+ .. ..|...|...|-+...++-.++. |. ..+.-+... .......||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 467999999996332 22 47888999999999988776654 21 111111111 112245899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|...+..=.- ...+++-+.++|+|.|..++..+
T Consensus 109 aADClFfdE~---h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLFFDEH---HESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred eccchhHHHH---HHHHHHHHHHHhCcccceeEecC
Confidence 9987754322 67899999999999999777654
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.042 Score=55.69 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=70.2
Q ss_pred CCCCEEEEECCcc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----------C----------C
Q 017080 121 PSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------P----------Y 175 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----------~----------~ 175 (377)
.++.+|+=+|+|. |..+ ....|+.|+++|.++..++.++..+.++...|..+. . +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 4688999999999 6654 235677999999999999999998888664443220 0 0
Q ss_pred CC--CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 176 RS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 176 ~~--~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+ +.+|+|+.......-+. +..+.+++.+.+||||.++..-.
T Consensus 243 ~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEEcc
Confidence 11 35899998776544434 43446999999999999877643
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.013 Score=58.15 Aligned_cols=98 Identities=22% Similarity=0.283 Sum_probs=63.6
Q ss_pred hCCCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C-CCC---CceeEE
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YRS---DFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~-~~~---~~fD~V 183 (377)
..++.+..+||+-||||.+.- ..+-..|+|+++++..++.|+.+ |.+|+++-++++ + +-. ++=++|
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v 458 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLV 458 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceE
Confidence 457888999999999999753 35566999999999999999887 688999966663 2 111 122333
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....--. .. --..+++.+.+.-+|-=.++++.
T Consensus 459 ~iiDPpR--~G--lh~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 459 AIIDPPR--KG--LHMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred EEECCCc--cc--ccHHHHHHHHhccCccceEEEEc
Confidence 2221100 00 01356666666665666666664
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.056 Score=48.11 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++.+.++.||||-.+.+.. ..+...+++.|+++..++.|.++ .++...+|....-.++..+|+|+..
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEe
Confidence 34667789999999998753 37777999999999999988776 2445555553322334578999888
Q ss_pred cchhhcCChHHHHHHHHHHHHccc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVK 210 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~Lk 210 (377)
++-.-+ ...+|.+-.+.|+
T Consensus 93 GMGG~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 93 GMGGTL-----IREILEEGKEKLK 111 (226)
T ss_pred CCcHHH-----HHHHHHHhhhhhc
Confidence 776543 4567777777775
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.062 Score=51.35 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=66.9
Q ss_pred hCCCCCCEEEEECCccCc--ccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CCCCCCceeEEEeccchh
Q 017080 118 NSLPSGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~--~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~--~~~~~~~fD~V~~~~~l~ 190 (377)
..+.||.+|+=+|+| |. ++- ...+++|+++|.|++-.+.|++.+.......... ...-.+.||+|+..-. .
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~ 239 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P 239 (339)
T ss_pred cCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h
Confidence 457899999999999 65 321 2466999999999999999999866554432211 1111234999998754 2
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..+....+.||+||.+++.-..
T Consensus 240 ---------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ---------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---------hhHHHHHHHHhcCCEEEEECCC
Confidence 4566778889999999988544
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.1 Score=47.00 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHH----HHHHHHHc-CCeEEEeeCCCCC---CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~----~~~~a~~~-~~~~~~~d~~~~~---~~~~~fD~V~~ 185 (377)
+++||.+||-+|++.|.... ..|..-|++++.|+. ++..|+++ |+--++-|+.... ..-+-.|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 57899999999999998542 278889999999874 56777766 6666777876532 11235677766
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
- ++.+++...+.-+....||+||-++|+.-+
T Consensus 233 D-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 D-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred c-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 4 333333556667788899999999998644
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.022 Score=50.47 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=58.8
Q ss_pred CCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC----CCCCCceeEEEecc
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDFGDAAISIA 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~----~~~~~~fD~V~~~~ 187 (377)
....|+|.-||.|.... ...+..|+++|++|.-+..|+.+ .+.|+++|+.++ .+....+|+|....
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 44589999999887653 26778999999999999999987 478999998763 34344566766654
Q ss_pred chhhcCChHHHHHHHHHHHHccccC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKG 212 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~Lkpg 212 (377)
....-.- ...-+-.+...++|.
T Consensus 174 pwggp~y---~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 174 PWGGPSY---LRADVYDLETHLKPM 195 (263)
T ss_pred CCCCcch---hhhhhhhhhhhcchh
Confidence 3332111 333444455555554
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.15 Score=46.62 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCCEEEEECCccCcc---cccCCCceEEEEeCCHHHHHHHHH--c--------CCeEEEee--CCC---CCCCCCc-eeE
Q 017080 122 SGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVD--R--------GHEVLVAD--AVN---LPYRSDF-GDA 182 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~---~~~~~~~~v~gvD~s~~~~~~a~~--~--------~~~~~~~d--~~~---~~~~~~~-fD~ 182 (377)
...+||++|+|+|.. +....+++|+-.|+.......... . +..+.+.. -.+ ..+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 456899999999963 234678899999986654432222 1 11222222 111 1122233 999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
|++..++.+-.. ...++.-++..|..+|.+++...-.
T Consensus 166 ilasDvvy~~~~---~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEEES---FEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecCCc---chhHHHHHHHHHhcCCeEEEEEecc
Confidence 999999998888 7788888888898888777766543
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.12 Score=50.34 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCceeEEE
Q 017080 120 LPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAI 184 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~~~~~fD~V~ 184 (377)
..+|.||||+.+..|.= +.. .....|++.|.+..-+.....+ |..+...|...+| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 35789999999999862 222 4556899999999988877766 3344555665554 333 899998
Q ss_pred eccchhh------------cCC-------hHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 185 SIAVLHH------------LST-------ESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 185 ~~~~l~h------------~~~-------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
.-.-..- ... .....++|......+++||+|+-++-+...
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 5221111 010 000357888899999999999998765543
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.035 Score=43.87 Aligned_cols=40 Identities=10% Similarity=0.290 Sum_probs=30.9
Q ss_pred ceeEEEeccchhhcC--C-hHHHHHHHHHHHHccccCcEEEEE
Q 017080 179 FGDAAISIAVLHHLS--T-ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~--~-~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.||+|+|..|.-|+. . ++....+++.+++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999999876542 1 233789999999999999998887
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.11 Score=48.95 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=38.1
Q ss_pred CCEEEEECCccCcc---c-ccCCCceEEEEeCCHHHHHHHHHc---C------CeEEEeeCCC-----CCCCCCceeEEE
Q 017080 123 GSLVLDAGCGNGKY---L-GLNPDCFFVGCDISPSLIKICVDR---G------HEVLVADAVN-----LPYRSDFGDAAI 184 (377)
Q Consensus 123 ~~~vLDiGcG~G~~---~-~~~~~~~v~gvD~s~~~~~~a~~~---~------~~~~~~d~~~-----~~~~~~~fD~V~ 184 (377)
.-++||||+|..-. + ....+++++|+|+++..++.|+++ | |+++...-.. +..+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 46899999998652 1 223489999999999999999986 3 5554332211 112346899999
Q ss_pred eccchhhcC
Q 017080 185 SIAVLHHLS 193 (377)
Q Consensus 185 ~~~~l~h~~ 193 (377)
|+=-++.-.
T Consensus 183 CNPPFy~s~ 191 (299)
T PF05971_consen 183 CNPPFYSSQ 191 (299)
T ss_dssp E-----SS-
T ss_pred cCCccccCh
Confidence 987776543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.39 Score=45.30 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred hCCCCCCEEEEECCcc-Cccc----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----------CCCCCcee
Q 017080 118 NSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------PYRSDFGD 181 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----------~~~~~~fD 181 (377)
..++.|.+||=+|+|+ |.++ ....-.+|+.+|+++.-++.|++-+.+.+.-+.... .+.+..+|
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 4567899999999998 6543 334455999999999999999998766544333221 12234588
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+.+....+ ...++.....+|+||.+++..+..+
T Consensus 245 ~~~dCsG~---------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 245 VTFDCSGA---------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred eEEEccCc---------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 88776543 3566667888999999888877654
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.21 Score=46.49 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=71.1
Q ss_pred CCCCCEEEEECCccCccccc---CCCc-eEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC--CCCCCceeE
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPSLIKICVDR-----------GHEVLVADAVNL--PYRSDFGDA 182 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~-~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~--~~~~~~fD~ 182 (377)
++...+||=||.|.|.+++. ++.. ++.-+|+....++..++. .+....+|...+ ..+.++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 45668999999999998864 4333 788899999888887764 467777876553 245789999
Q ss_pred EEeccchhhcCChHH-HHHHHHHHHHccccCcEEEEEE
Q 017080 183 AISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 183 V~~~~~l~h~~~~~~-~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
|+.-..=--.+.... ...++..+.+.|||||++.+..
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 987432111111100 3577888999999999988874
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.12 Score=52.32 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=67.8
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-----------------------CC
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----------------------LP 174 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-----------------------~~ 174 (377)
++.+||=+|+|. |..+. ...++.|+.+|.++..++.++..+.+++..|..+ ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 468999999998 66542 2567789999999999999988877776555421 11
Q ss_pred CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
-.-..+|+|+....+.--+. |.-+.+++.+.+|||+.++-
T Consensus 243 e~~~~~DIVI~TalipG~~a---P~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPA---PKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHhCCCCEEEECcccCCCCC---CeeehHHHHhhCCCCCEEEE
Confidence 01246899988776655444 55688899999999988663
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.053 Score=45.81 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=38.3
Q ss_pred CCceeEEEeccchhhcC--------ChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 177 SDFGDAAISIAVLHHLS--------TESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~--------~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.++||.+.|..+++|+- |+....+.+.++.++|||||.+++..+...
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 57899999999999963 211146888999999999999999988764
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.24 Score=43.96 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=51.2
Q ss_pred CCCCCCEEEEECCccCccc-------cc-CCCceEEEEeCCHHHH--HHHHH----cCCeEEEeeCCCCC----CC----
Q 017080 119 SLPSGSLVLDAGCGNGKYL-------GL-NPDCFFVGCDISPSLI--KICVD----RGHEVLVADAVNLP----YR---- 176 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~-------~~-~~~~~v~gvD~s~~~~--~~a~~----~~~~~~~~d~~~~~----~~---- 176 (377)
.++| ..|+|+|.-.|.-+ .. .+.++|+|+|+..... ..... .+++++++|..+.. ..
T Consensus 30 ~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 30 ELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred HhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhc
Confidence 3444 59999999998732 22 4778999999953322 11222 36999999987642 11
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.....+|+. .+-|...+ ..+.|+....+++||+++++.+..
T Consensus 109 ~~~~vlVil-Ds~H~~~h---vl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 109 PPHPVLVIL-DSSHTHEH---VLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp --SSEEEEE-SS----SS---HHHHHHHHHHT--TT-EEEETSHH
T ss_pred cCCceEEEE-CCCccHHH---HHHHHHHhCccCCCCCEEEEEecc
Confidence 122233333 33333344 678888899999999999887643
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.31 Score=47.73 Aligned_cols=99 Identities=22% Similarity=0.316 Sum_probs=65.6
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHc-CCeEEEeeCCC-C-----CC-CCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVN-L-----PY-RSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~-~-----~~-~~~~fD~V~ 184 (377)
..+.++.+||.+|||. |..+. ...+. .++++|.++...+.+++. +..++...-.+ + .+ ....+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3567889999999987 66542 23454 699999999999999887 54433221111 1 11 223689888
Q ss_pred eccc-----------hhhc----CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAV-----------LHHL----STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~-----------l~h~----~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..-. +.|+ .+ ....+.++.+.|+|+|.+++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETD---RPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccC---chHHHHHHHHHhccCCEEEEEc
Confidence 7532 1111 23 3568899999999999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.081 Score=52.74 Aligned_cols=95 Identities=12% Similarity=0.241 Sum_probs=74.6
Q ss_pred CCEEEEECCccCcccc--------cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 123 GSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~--------~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
...|+=+|+|-|-+.+ .....++++++-+|.++-..... .++++..|+..++-|..+.|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 3478899999998642 14567999999999988666554 588899999999865688898876 5
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.|..+.|.|.-++.|.-+-+.|||+|+.+=.
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 6677777666689999999999999875543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.33 Score=46.68 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=58.6
Q ss_pred CCCCEEEEECCccCccc-----------c---------cCCCceEEEEeCCHHHHH-----------HHHHcCCeE---E
Q 017080 121 PSGSLVLDAGCGNGKYL-----------G---------LNPDCFFVGCDISPSLIK-----------ICVDRGHEV---L 166 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~-----------~---------~~~~~~v~gvD~s~~~~~-----------~a~~~~~~~---~ 166 (377)
+..-+|+|+||..|..+ . ..|..+|+--|+-.+--. .....+--| +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34469999999999842 0 023468888897543111 111112222 3
Q ss_pred EeeCCCCCCCCCceeEEEeccchhhcCCh------------------------------------HHHHHHHHHHHHccc
Q 017080 167 VADAVNLPYRSDFGDAAISIAVLHHLSTE------------------------------------SRRKKAIEELVRVVK 210 (377)
Q Consensus 167 ~~d~~~~~~~~~~fD~V~~~~~l~h~~~~------------------------------------~~~~~~l~~~~r~Lk 210 (377)
-+.+..--+|+++.|++++..++||+... .++..+|+.=++-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 34555544889999999999999998631 124556666677889
Q ss_pred cCcEEEEEEcCCCc
Q 017080 211 KGSLVLITVWAVEQ 224 (377)
Q Consensus 211 pgG~l~i~~~~~~~ 224 (377)
|||++++.......
T Consensus 175 ~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 175 PGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEE-ST
T ss_pred cCcEEEEEEeeccc
Confidence 99999999876554
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.71 Score=38.55 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=63.3
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc-c-CCC-ceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCc
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG-L-NPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDF 179 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~-~-~~~-~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~ 179 (377)
..+..++.. .+..+.+|+|+|.|+..- . .-+ ...+|++++|..+..++-+ ..+|..-|+-...+. .
T Consensus 62 ~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~--d 138 (199)
T KOG4058|consen 62 ENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR--D 138 (199)
T ss_pred HHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc--c
Confidence 334444433 344589999999999642 2 222 4789999999999887755 466777777665543 4
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|..|+.+.+-.-+++ +-.++..-+..|..++-.-+.
T Consensus 139 y~~vviFgaes~m~d------Le~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPD------LEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred cceEEEeehHHHHhh------hHHHHHhhCcCCCeEEEEecC
Confidence 555665555444444 233444455666666655443
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.31 Score=46.26 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=85.6
Q ss_pred HHHHHHhhCccccc--ccccchHHHHHHHhCCCCCCEEEEECCccCccc--ccCCCceEEEEeCCHHHHHHHHHc-----
Q 017080 91 VHRVYDAIAPHFSS--TRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL--GLNPDCFFVGCDISPSLIKICVDR----- 161 (377)
Q Consensus 91 ~~~~y~~~a~~y~~--~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~--~~~~~~~v~gvD~s~~~~~~a~~~----- 161 (377)
...-|+--...|-. .......-+.+-++...+|.-|+|-=-|||.++ ...-|+.|+|.||+-.++...+..
T Consensus 175 li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~ 254 (421)
T KOG2671|consen 175 LIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIK 254 (421)
T ss_pred HhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchh
Confidence 34445544444532 223334445555667899999999999999976 347788999999999888743322
Q ss_pred ------C-----CeEEEeeCCCCCCCC-CceeEEEecc------------------------chhhcCChHH------HH
Q 017080 162 ------G-----HEVLVADAVNLPYRS-DFGDAAISIA------------------------VLHHLSTESR------RK 199 (377)
Q Consensus 162 ------~-----~~~~~~d~~~~~~~~-~~fD~V~~~~------------------------~l~h~~~~~~------~~ 199 (377)
+ +.++.+|..+.++.. ..||.|+|-= ...|+|..+. ..
T Consensus 255 aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~ 334 (421)
T KOG2671|consen 255 ANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVY 334 (421)
T ss_pred HhHHHhCCcchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHh
Confidence 1 567888998876544 5799999921 1223333111 34
Q ss_pred HHHHHHHHccccCcEEEEEEc
Q 017080 200 KAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..|.-.+++|..||++++--+
T Consensus 335 dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 335 DLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hHHHhhHhhhhcCceEEEecC
Confidence 556667888899999888655
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.094 Score=48.50 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------------CCeE---EEeeCCCCCC-CCC-
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------------GHEV---LVADAVNLPY-RSD- 178 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------------~~~~---~~~d~~~~~~-~~~- 178 (377)
-.+.+|||+|||.|.-.. ......+...|.|...++...-. ...+ ...+..++-+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 467899999999987432 22335777777777665322111 0111 1110001111 113
Q ss_pred -ceeEEEeccchhhcCChHHHHHH-HHHHHHccccCcEEEEE
Q 017080 179 -FGDAAISIAVLHHLSTESRRKKA-IEELVRVVKKGSLVLIT 218 (377)
Q Consensus 179 -~fD~V~~~~~l~h~~~~~~~~~~-l~~~~r~LkpgG~l~i~ 218 (377)
.||+|.+..++..... ...+ +......++++|.++..
T Consensus 195 ~~ydlIlsSetiy~~~~---~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDS---LAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcch---hhhhHhhhhhhcCCccchhhhh
Confidence 7999999999988777 3444 56666777888887765
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.45 Score=45.70 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=60.7
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEe----eCCCCCCCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA----DAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~----d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.++.+||=+|+|. |.++. ...++ +|+++|.++..++.+++.+...... ++..+....+.+|+|+..-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~---- 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS---- 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC----
Confidence 4688999999865 54432 24566 7999999999999999887654321 1111111123588887642
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. ...+....+.|+|||.+++.-.
T Consensus 244 -G~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 -GH----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -CC----HHHHHHHHHHhhcCCEEEEEcc
Confidence 22 2467788899999999888753
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.76 Score=43.54 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------CCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~------~~~~~~fD~V~~~~~ 188 (377)
.+.++.+||..|+|. |..+. ...+.+|++++.++...+.+++.++..+..+-... ....+.+|+|+....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC
Confidence 467788999988763 55432 25677899999999999998777665444332211 123457898875421
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
....++++.+.|+++|.++....
T Consensus 242 ---------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ---------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ---------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13578889999999999887643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.82 Score=44.26 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=65.5
Q ss_pred CCCCEEEEECCcc-Ccccc----cCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCC------CCCCC-CceeEEEecc
Q 017080 121 PSGSLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVN------LPYRS-DFGDAAISIA 187 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~------~~~~~-~~fD~V~~~~ 187 (377)
.++.+|+=+|||+ |.++. .....+|+.+|+++.-++.|++. +.........+ ..... ..+|+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 3445999999999 87642 25556999999999999999984 44443333221 01112 3689888765
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
. . ...+..+.+.++|||.+.+.-...
T Consensus 247 G-----~----~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 G-----S----PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred C-----C----HHHHHHHHHHhcCCCEEEEEeccC
Confidence 4 2 358899999999999998886553
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.078 Score=41.71 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCCEEEEECCccCcccc--cCCCceEEEEeC
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDI 150 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~ 150 (377)
+....+|||||+|.+.- ...|..-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 35689999999999753 245666788885
|
; GO: 0008168 methyltransferase activity |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.31 Score=46.12 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-----C
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y 175 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-----~ 175 (377)
.++++.+. +.++..++|.=+|.|..+. ..+...|+|+|.++.+++.++++ ++.++.+++.++. .
T Consensus 10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 34455553 3567799999999998643 34458999999999999999875 3555666655432 1
Q ss_pred CCCceeEEEecc
Q 017080 176 RSDFGDAAISIA 187 (377)
Q Consensus 176 ~~~~fD~V~~~~ 187 (377)
..+++|.|+...
T Consensus 89 ~~~~vDgIl~DL 100 (305)
T TIGR00006 89 LVTKIDGILVDL 100 (305)
T ss_pred CCCcccEEEEec
Confidence 234566666643
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.26 Score=40.02 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCceeEEEec
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISI 186 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~-~~~fD~V~~~ 186 (377)
.+++.++....+..+|+|||-|.=.- +.. ..|..|+++|+.+. .++ .+++++..|+.+..+. -...|+|.+.
T Consensus 2 ~~~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-~g~~~v~DDif~P~l~iY~~a~lIYSi 77 (127)
T PF03686_consen 2 VDFAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-EGVNFVVDDIFNPNLEIYEGADLIYSI 77 (127)
T ss_dssp HHHHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred chHHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-cCcceeeecccCCCHHHhcCCcEEEEe
Confidence 34555555444556999999887442 221 45689999999998 344 5799999999984321 1356999886
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
..-. | +...+.++++.+ |.-++|.....+.
T Consensus 78 RPP~-----E-l~~~il~lA~~v--~adlii~pL~~e~ 107 (127)
T PF03686_consen 78 RPPP-----E-LQPPILELAKKV--GADLIIRPLGGES 107 (127)
T ss_dssp S--T-----T-SHHHHHHHHHHH--T-EEEEE-BTTB-
T ss_pred CCCh-----H-HhHHHHHHHHHh--CCCEEEECCCCCC
Confidence 4311 1 455666666654 5667777666543
|
; PDB: 2K4M_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.75 E-value=2.2 Score=43.37 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=73.2
Q ss_pred ccchHHHHHHHhC---CCCCCEEEEECCccCccccc-------CC-CceEEEEeCCHHHHHHHHHc----CCeE----EE
Q 017080 107 FAKWPKVATFLNS---LPSGSLVLDAGCGNGKYLGL-------NP-DCFFVGCDISPSLIKICVDR----GHEV----LV 167 (377)
Q Consensus 107 ~~~~~~~~~~l~~---~~~~~~vLDiGcG~G~~~~~-------~~-~~~v~gvD~s~~~~~~a~~~----~~~~----~~ 167 (377)
+...+.+..++.. ..+..+|+|-.||+|.++.. .. ...+.|.|+++.....|+.+ ++.. ..
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~ 247 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH 247 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence 3344444444432 24667999999999986521 11 36799999999999999987 4432 33
Q ss_pred eeCCCCC-C----CCCceeEEEeccchh---hcC-------------------ChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 168 ADAVNLP-Y----RSDFGDAAISIAVLH---HLS-------------------TESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 168 ~d~~~~~-~----~~~~fD~V~~~~~l~---h~~-------------------~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+|-..-| . ..+.||+|+++--+. |.. ....-.++++++...|+|||+..|..+
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 3333323 2 236799998854332 111 111026899999999999997777665
Q ss_pred C
Q 017080 221 A 221 (377)
Q Consensus 221 ~ 221 (377)
.
T Consensus 328 ~ 328 (489)
T COG0286 328 D 328 (489)
T ss_pred C
Confidence 4
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.4 Score=40.07 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=68.8
Q ss_pred HHhCCCCCCEEEEECCccCccc----cc----CCCceEEEEeCCHHHHHHHHHc------C--CeEEEeeCCC-CC-CCC
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYL----GL----NPDCFFVGCDISPSLIKICVDR------G--HEVLVADAVN-LP-YRS 177 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~----~~----~~~~~v~gvD~s~~~~~~a~~~------~--~~~~~~d~~~-~~-~~~ 177 (377)
-+..+..+...+|+|+|+-.=+ .. ..-.+++.+|+|...++...+. + +.-+.+|.+. +. .+.
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR 151 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence 3344555789999999997622 21 2335899999999988543332 3 3335566543 11 222
Q ss_pred -CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 178 -DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 178 -~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++==.++...++..+...+ ...+|.++...|+||-.+++.+
T Consensus 152 ~~~Rl~~flGStlGN~tp~e-~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGE-CAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CCeEEEEEecccccCCChHH-HHHHHHHHHhcCCCcceEEEec
Confidence 3323445556788887655 7899999999999999999975
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=91.72 E-value=3.2 Score=38.45 Aligned_cols=141 Identities=10% Similarity=-0.032 Sum_probs=83.4
Q ss_pred CEEEEECCccCcc-ccc--CCCceEEEEeCCHHHHHH---HHH------cCCeEEEeeCCC-C-------CCCCCceeEE
Q 017080 124 SLVLDAGCGNGKY-LGL--NPDCFFVGCDISPSLIKI---CVD------RGHEVLVADAVN-L-------PYRSDFGDAA 183 (377)
Q Consensus 124 ~~vLDiGcG~G~~-~~~--~~~~~v~gvD~s~~~~~~---a~~------~~~~~~~~d~~~-~-------~~~~~~fD~V 183 (377)
..|+.+|||-=.- .+. .++..++-+|.-..+-.. .++ .+..++..|+.. + .+..+.--++
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 4799999998442 222 235677777764433211 111 145677778752 1 1222334588
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCC--CCCcCCCCCCCcc
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPG--SPRVRSPSARTLE 261 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~ 261 (377)
++-+++.+++.++ ..++|+.+.+...||+.+++........ .... .....+.... .........++.+
T Consensus 163 i~EGvl~YL~~~~-v~~ll~~i~~~~~~gs~l~~d~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (260)
T TIGR00027 163 LWEGLLMYLTEEA-VDALLAFIAELSAPGSRLAFDYVRPLDG--EWRA-------GMRAPVYHAARGVDGSGLVFGIDRA 232 (260)
T ss_pred eecchhhcCCHHH-HHHHHHHHHHhCCCCcEEEEEeccccch--hHHH-------HHHHHHHHhhhcccccccccCCChh
Confidence 8889999998766 7899999999988999888865443111 1000 0001111100 1112234456789
Q ss_pred cHHhHhhcCCCcc
Q 017080 262 SIPETEDNGSEEQ 274 (377)
Q Consensus 262 ~l~~~l~~aGF~~ 274 (377)
++.++|...||..
T Consensus 233 ~~~~~l~~~Gw~~ 245 (260)
T TIGR00027 233 DVAEWLAERGWRA 245 (260)
T ss_pred hHHHHHHHCCCee
Confidence 9999999999955
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.56 Score=41.70 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCEEEEECCccCccccc----CCC--ceEEEEeCCHHHHHHHHHc----------------------------------
Q 017080 122 SGSLVLDAGCGNGKYLGL----NPD--CFFVGCDISPSLIKICVDR---------------------------------- 161 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~~~--~~v~gvD~s~~~~~~a~~~---------------------------------- 161 (377)
.+-++-|-.||.|.++.. ++. ..|+|.|+++.+++.|++|
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 346999999999997532 333 3899999999999999976
Q ss_pred ---------------CCeEEEeeCCCCC-----CCCCceeEEEeccchhhcCChH------HHHHHHHHHHHccccCcEE
Q 017080 162 ---------------GHEVLVADAVNLP-----YRSDFGDAAISIAVLHHLSTES------RRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 162 ---------------~~~~~~~d~~~~~-----~~~~~fD~V~~~~~l~h~~~~~------~~~~~l~~~~r~LkpgG~l 215 (377)
.....+.|+.+.. ......|+|+.---..++.+.+ -...+|..++.+|-.++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 0236677777621 1123359999865555544321 1468999999999555555
Q ss_pred EEEE
Q 017080 216 LITV 219 (377)
Q Consensus 216 ~i~~ 219 (377)
.+++
T Consensus 211 ~v~~ 214 (246)
T PF11599_consen 211 AVSD 214 (246)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5543
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.82 Score=45.22 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=64.2
Q ss_pred hHHHHHHHhCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEe
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
|..+.+.....-+|.+|+=+|+|. |.... ...|++|+.+|+++.-.+.|+..+..... ..+. -...|+|+.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~--~~e~---v~~aDVVI~ 263 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMT--MEEA---VKEGDIFVT 263 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEcc--HHHH---HcCCCEEEE
Confidence 344444444445789999999998 76432 25677999999999988888877664432 2111 134699887
Q ss_pred ccchhhcCChHHHHHHHHH-HHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEE-LVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~-~~r~LkpgG~l~i~~ 219 (377)
.- .. ..++.. ..+.+|+||+++..-
T Consensus 264 at-----G~----~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 TT-----GN----KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CC-----CC----HHHHHHHHHhcCCCCcEEEEeC
Confidence 42 22 234554 589999999987764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.4 Score=42.16 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=62.1
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
..+.++.+||=.|+|. |.++. ...++.|++++.++.-.+.+++.+...+. |..+. ..+.+|+++.....
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi-~~~~~--~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAG-GAYDT--PPEPLDAAILFAPA---- 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceec-ccccc--CcccceEEEECCCc----
Confidence 3567899999999864 43332 25677899999999999999988765443 21111 12457876543321
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+....+.|++||.+++.-.
T Consensus 234 -----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----HHHHHHHHHhhCCCcEEEEEec
Confidence 2467888899999999987653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.18 Score=45.20 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCEEEEECCccCccccc-----C---C-C-c---eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCcee
Q 017080 123 GSLVLDAGCGNGKYLGL-----N---P-D-C---FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGD 181 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~-----~---~-~-~---~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD 181 (377)
-.|++|+....|.|++. + + . . .+++||+.+.. .-.++.-+++|+.... |...+.|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----PI~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----PIEGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----ccCceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 46999999999998531 1 1 1 1 49999996642 2236777899998742 4456889
Q ss_pred EEEeccc-----hhhcCC---hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 182 AAISIAV-----LHHLST---ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 182 ~V~~~~~-----l~h~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+|+|-+. +|-+.. .+.+.++|.-...+|||||.++--.+-.
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 9999763 333322 1224567777889999999988776543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.1 Score=36.49 Aligned_cols=63 Identities=13% Similarity=-0.020 Sum_probs=42.4
Q ss_pred CCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHcCCeE-EEee----CCCCCCCCCceeEEEe
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDRGHEV-LVAD----AVNLPYRSDFGDAAIS 185 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~~~~~-~~~d----~~~~~~~~~~fD~V~~ 185 (377)
.+.+|+|||.+-|.-+-+ ..|+ .|+++++++...+..+++ +.+ .+.| ..+++-.-+.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een-~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV-CAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH-hhhheeeeceeecccccccCCCcceEEE
Confidence 578999999999986543 3444 899999999999998876 221 1112 1234433467786544
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.36 Score=47.20 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCeEEEeeCCCC--CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 GHEVLVADAVNL--PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 ~~~~~~~d~~~~--~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+++++.+++.+. ..+++++|.++....+.++++.+ ..+.++++.+.++|||++++-....
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-LNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-HHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 577888888773 25689999999999999999865 8999999999999999999976553
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.5 Score=43.43 Aligned_cols=102 Identities=24% Similarity=0.245 Sum_probs=66.8
Q ss_pred CCEEEEECCccCc--ccc--cCC--CceEEEEeCCHHHHHHHHHc--C----CeEEEee--CC--CCCCC-CCceeEEEe
Q 017080 123 GSLVLDAGCGNGK--YLG--LNP--DCFFVGCDISPSLIKICVDR--G----HEVLVAD--AV--NLPYR-SDFGDAAIS 185 (377)
Q Consensus 123 ~~~vLDiGcG~G~--~~~--~~~--~~~v~gvD~s~~~~~~a~~~--~----~~~~~~d--~~--~~~~~-~~~fD~V~~ 185 (377)
...++|+|.|.|. ++. ..+ .-.++.||.|..|....... + -..++.. +. .+|.. .+.||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 4578899988776 322 123 34899999999998777654 1 1111111 11 13433 355999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHc-cccCcEEEEEEcCCCc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRV-VKKGSLVLITVWAVEQ 224 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~-LkpgG~l~i~~~~~~~ 224 (377)
.+.++++.+...+..+.+++.+. .++||.+++.......
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 99999998866566666666654 5788888887655443
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.3 Score=40.50 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=50.4
Q ss_pred CCCCCC--EEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCC-CCCC
Q 017080 119 SLPSGS--LVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVNL-PYRS 177 (377)
Q Consensus 119 ~~~~~~--~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~~-~~~~ 177 (377)
.+++|. +|||+=+|+|..+- ...|+.|+++|-++......+.. +++++.+|..++ .-..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 456666 99999999999653 35688999999999876544332 245556666553 2123
Q ss_pred CceeEEEeccchhh
Q 017080 178 DFGDAAISIAVLHH 191 (377)
Q Consensus 178 ~~fD~V~~~~~l~h 191 (377)
.+||+|+.-=++.|
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 47999998666665
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=88.97 E-value=7.8 Score=37.91 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=69.7
Q ss_pred HHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCc-c-------ccc---CCCceEEEEeC----CHHHHHH
Q 017080 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK-Y-------LGL---NPDCFFVGCDI----SPSLIKI 157 (377)
Q Consensus 93 ~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~-~-------~~~---~~~~~v~gvD~----s~~~~~~ 157 (377)
+.|.+..|.+.-..+.....+.+.+..- +.-+|+|+|.|.|. + +.. .|..++|||+. +...++.
T Consensus 82 ~~~~~~~P~~~fa~~taNqaIleA~~g~-~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 82 QLFYELSPFLKFAHFTANQAILEAFEGE-RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHhhHHhhhhhchhHHHHHHhccC-cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 3344444544433344455555555533 44699999999997 2 121 35569999999 6665555
Q ss_pred HHHc--------CCeEEEe-----eCCCC-----CCCCCceeEEEeccchhhcCChH----HHHHHHHHHHHccccCcEE
Q 017080 158 CVDR--------GHEVLVA-----DAVNL-----PYRSDFGDAAISIAVLHHLSTES----RRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 158 a~~~--------~~~~~~~-----d~~~~-----~~~~~~fD~V~~~~~l~h~~~~~----~~~~~l~~~~r~LkpgG~l 215 (377)
+.++ |+.|.-. +.+++ ...++..=+|-|...+||+.+.. .+...+-...+.|+|.-.
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv- 239 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV- 239 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE-
Confidence 4443 6655322 22222 12334444555667789987321 123344455567899844
Q ss_pred EEEEc
Q 017080 216 LITVW 220 (377)
Q Consensus 216 ~i~~~ 220 (377)
++.+.
T Consensus 240 v~~E~ 244 (374)
T PF03514_consen 240 VLVEQ 244 (374)
T ss_pred EEEee
Confidence 44443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.9 Score=41.52 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=60.5
Q ss_pred CCCCCEEEEECCcc-Ccccc---cCCCceEEEEeC---CHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDI---SPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~ 188 (377)
..++.+||=+|+|. |.++. ...+++|++++. ++.-.+.+++.+..++ +..+.. ...+.+|+|+-...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC
Confidence 35788999999876 55432 255678999986 6888888888777653 222111 01245788777532
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. ...+.+..+.|++||.+++.-.
T Consensus 248 -----~----~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 -----V----PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred -----C----HHHHHHHHHHccCCcEEEEEec
Confidence 2 2467888999999999877643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.4 Score=43.48 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=41.7
Q ss_pred hCCCCCC--EEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHH-------c---------CCeEEEeeCCC-CCCC
Q 017080 118 NSLPSGS--LVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD-------R---------GHEVLVADAVN-LPYR 176 (377)
Q Consensus 118 ~~~~~~~--~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~-------~---------~~~~~~~d~~~-~~~~ 176 (377)
..++++. +|||.=+|-|.-+- ...|++|++++-||.+....+. . +++++.+|..+ +..+
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~ 148 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP 148 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc
Confidence 3455553 89999999998431 2357899999999976543331 1 47888999887 5566
Q ss_pred CCceeEEEeccchhh
Q 017080 177 SDFGDAAISIAVLHH 191 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h 191 (377)
+++||+|+.-=++.+
T Consensus 149 ~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 149 DNSFDVVYFDPMFPE 163 (234)
T ss_dssp SS--SEEEE--S---
T ss_pred CCCCCEEEECCCCCC
Confidence 889999999777766
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.96 Score=43.51 Aligned_cols=90 Identities=24% Similarity=0.227 Sum_probs=64.1
Q ss_pred CCEEEEECCccCc----ccccCCCceEEEEeCCHHHHHHHHHc---C----CeEEEeeCCCCCC-CCCceeEEEeccchh
Q 017080 123 GSLVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR---G----HEVLVADAVNLPY-RSDFGDAAISIAVLH 190 (377)
Q Consensus 123 ~~~vLDiGcG~G~----~~~~~~~~~v~gvD~s~~~~~~a~~~---~----~~~~~~d~~~~~~-~~~~fD~V~~~~~l~ 190 (377)
+.+|||.=+|+|. ++...+..+|+.-|+||.+++.++.+ | ...+..|+..+-. ....||+|=. .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 6799999999997 33334444999999999999999987 2 3334455544321 1367787643 1
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
=+-. |..++....+.++.||.+.++-
T Consensus 129 PFGS---PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGS---PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCC---CchHHHHHHHHhhcCCEEEEEe
Confidence 2233 6788999999999999999874
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.46 E-value=2.4 Score=40.84 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=64.9
Q ss_pred CCCCCCEEEEECCccCcc----ccc-CC---CceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---------
Q 017080 119 SLPSGSLVLDAGCGNGKY----LGL-NP---DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--------- 174 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~----~~~-~~---~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--------- 174 (377)
.+.||.+|||+.+..|.= ++. .. ...|++-|.++.-+...... ++.+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 568999999999999972 221 21 34899999998755443322 2223333333322
Q ss_pred CCCCceeEEEec------cchhhcCChHH--------------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 175 YRSDFGDAAISI------AVLHHLSTESR--------------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 175 ~~~~~fD~V~~~------~~l~h~~~~~~--------------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.....||-|++- +++.+-++-.+ ...+|.+-.++||+||.++-++-+..
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 123468998872 12222222110 24678889999999999999986543
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.79 Score=36.47 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=57.9
Q ss_pred HHHhCCCCCCEEEEECCccCcc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCceeEEEeccchh
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLH 190 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~ 190 (377)
..++......+|+|||-|-=.. +.. ..|+.++++|+.+. .++ .++++++.|+.+.... -...|+|.+.
T Consensus 6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-~g~~~v~DDitnP~~~iY~~A~lIYSi---- 77 (129)
T COG1255 6 EYIARENARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-EGLRFVVDDITNPNISIYEGADLIYSI---- 77 (129)
T ss_pred HHHHHHhcCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-ccceEEEccCCCccHHHhhCccceeec----
Confidence 3343333344999998765332 221 56799999999987 444 5799999999885421 1335788774
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
..+.+....+-++.+.+ |..++|.....+
T Consensus 78 --RpppEl~~~ildva~aV--ga~l~I~pL~Ge 106 (129)
T COG1255 78 --RPPPELQSAILDVAKAV--GAPLYIKPLTGE 106 (129)
T ss_pred --CCCHHHHHHHHHHHHhh--CCCEEEEecCCC
Confidence 33111444455555544 445666655543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.20 E-value=2.4 Score=40.65 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=58.7
Q ss_pred CCCCCEEEEECCcc-Cccc----cc-CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 120 LPSGSLVLDAGCGN-GKYL----GL-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+.++.+||=+|||. |.++ .. ..+.+|+++|.++.-++.++..+..... .++. ....+|+|+-.-. .-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~---~~~~-~~~g~d~viD~~G--~~- 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI---DDIP-EDLAVDHAFECVG--GR- 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh---hhhh-hccCCcEEEECCC--CC-
Confidence 46789999999987 6543 22 3356899999999888888764322211 1111 1124788875332 10
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. ....+.+..+.|++||.+++.-.
T Consensus 234 ~---~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 G---SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred c---cHHHHHHHHHhCcCCcEEEEEee
Confidence 0 13578889999999999887643
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.43 E-value=0.62 Score=43.73 Aligned_cols=57 Identities=21% Similarity=0.179 Sum_probs=37.2
Q ss_pred CeEEEeeCCCC--CCCCCceeEEEec--cch--h--hc----CCh---HHHHHHHHHHHHccccCcEEEEEE
Q 017080 163 HEVLVADAVNL--PYRSDFGDAAISI--AVL--H--HL----STE---SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 163 ~~~~~~d~~~~--~~~~~~fD~V~~~--~~l--~--h~----~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..++.+|+.+. .+++++||+|++. +-+ . .. ... +-....+.++.++|||||.+++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 45677777763 3667889999983 211 0 00 000 003578999999999999999863
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.8 Score=45.75 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=33.0
Q ss_pred EEEeeCCC-CCCCCCceeEEEeccchhhcCChHHH-HHHHHHHHHccccCcEEEEEE
Q 017080 165 VLVADAVN-LPYRSDFGDAAISIAVLHHLSTESRR-KKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 165 ~~~~d~~~-~~~~~~~fD~V~~~~~l~h~~~~~~~-~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+..+|+.+ ++.-...||+++.-..--. .+++.| ..++++++++++|||.+.-.+
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDGFAPA-KNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCCCCCc-cChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 45566654 2212356899987543221 111112 589999999999999877543
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=85.80 E-value=1.3 Score=43.46 Aligned_cols=91 Identities=25% Similarity=0.207 Sum_probs=62.7
Q ss_pred CCCEEEEECCccCc----ccccCC-CceEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC-CCCCceeEEEec
Q 017080 122 SGSLVLDAGCGNGK----YLGLNP-DCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP-YRSDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~----~~~~~~-~~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~~~-~~~~~fD~V~~~ 186 (377)
.+.+|||.=+|+|. ++.+.+ ...|+.-|+|+.+++..+.+ + +++...|+..+- .....||+|=.-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 45699999999997 333333 35899999999999999887 1 345566766532 257789998652
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-+-. +..+|..+.+.+|.||.|.++.
T Consensus 129 ----PfGS---p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ----PFGS---PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----SS-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CCCC---ccHhHHHHHHHhhcCCEEEEec
Confidence 2333 7789999999999999999984
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.71 E-value=0.62 Score=42.22 Aligned_cols=55 Identities=15% Similarity=0.337 Sum_probs=35.3
Q ss_pred eEEEeeCCCC--CCCCCceeEEEecc--ch--h-h----cC-C--hHHHHHHHHHHHHccccCcEEEEE
Q 017080 164 EVLVADAVNL--PYRSDFGDAAISIA--VL--H-H----LS-T--ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 164 ~~~~~d~~~~--~~~~~~fD~V~~~~--~l--~-h----~~-~--~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+++.+|..+. .++++++|+|+..= .+ . + +. + .+-....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566777653 46788888888851 11 0 0 00 0 011357899999999999988764
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=85.60 E-value=5.4 Score=36.30 Aligned_cols=91 Identities=15% Similarity=0.020 Sum_probs=51.7
Q ss_pred CCCEEEEECCccCccc--c-cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCC-CC-CCCCceeEEEecc--c
Q 017080 122 SGSLVLDAGCGNGKYL--G-LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-LP-YRSDFGDAAISIA--V 188 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~--~-~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~-~~-~~~~~fD~V~~~~--~ 188 (377)
.|++||=+|=.--.-+ . ..+..+|+.+|+++.+++..++. .++.+..|+.+ +| .-.++||++++-= +
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 5789999984332211 1 25677999999999998776543 46677788876 33 2248999999842 2
Q ss_pred hhhcCChHHHHHHHHHHHHccccCc-EEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGS-LVLIT 218 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG-~l~i~ 218 (377)
+ +-..-++.+....||..| ..++.
T Consensus 124 ~------~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 124 P------EGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp H------HHHHHHHHHHHHTB-STT-EEEEE
T ss_pred H------HHHHHHHHHHHHHhCCCCceEEEE
Confidence 2 226788999999998766 44444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.06 E-value=5 Score=36.23 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=60.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~~~ 187 (377)
.+.++.+||-.|+|. |..+. ...+.+|++++.++...+.++..+..... +..... ...+.+|+++...
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVI-DYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceec-cCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 346789999999986 44332 25568999999999888887665432221 221111 1245689988643
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. . ...+..+.+.|+++|.++....
T Consensus 210 ~-----~----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 210 G-----G----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred C-----C----HHHHHHHHHhcccCCEEEEEcc
Confidence 2 2 1456777888999999887643
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.99 E-value=10 Score=33.37 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=71.1
Q ss_pred HHhCCCCCCEEEEECCccCcccc--------cCCCceEEEEeCCHHHHHHHH--HcCCeEEEeeCCCCC-------CCCC
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICV--DRGHEVLVADAVNLP-------YRSD 178 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~--------~~~~~~v~gvD~s~~~~~~a~--~~~~~~~~~d~~~~~-------~~~~ 178 (377)
++-.+. +..|+|+|.-.|.-+- .....+|+++|++-....-+. ..++.|+.++-.++. ...+
T Consensus 64 llw~~~-P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 64 LLWELQ-PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred HHHhcC-CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 333444 4689999998887331 134479999999877643332 347899999876642 1223
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.--+.+|...-||+.. ..+.|+-+.++|.-|-++++.+-+.+
T Consensus 143 y~kIfvilDsdHs~~h---vLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 143 YPKIFVILDSDHSMEH---VLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred CCcEEEEecCCchHHH---HHHHHHHhhhHhhcCceEEEeccccc
Confidence 3345666667777766 67888888999999999998876554
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=84.78 E-value=4.7 Score=38.85 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=60.2
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||=.|+|. |.++. ...++ .|+++|.++...+.+++.+..... +..+.. .....+|+|+-
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV-NSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE-cCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 567889999999865 44432 24566 599999999999999877654332 221110 11235888875
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.- .. ...+....+.+++||.+++.-
T Consensus 252 ~~-----g~----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 252 AV-----GR----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CC-----CC----HHHHHHHHHHhccCCEEEEEC
Confidence 32 22 245677788999999988764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.9 Score=40.81 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=35.7
Q ss_pred chHHHHHHHhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc
Q 017080 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 109 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
...++...+. ..++...+|.=-|.|..+ ...+++.++|+|.++.+++.++++
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~ 63 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKER 63 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCC
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHH
Confidence 3456666665 456679999988998864 346779999999999999999876
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.52 E-value=1.3 Score=41.67 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=65.5
Q ss_pred CEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 124 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
.+|.=||.|. |..+. ...++.|+-+|+|..-++..... ++...-.+..++...-.+.|++|..-.+.--..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-- 246 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-- 246 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC--
Confidence 4778888887 55543 26788999999999887776654 244444444444333357899998766665555
Q ss_pred HHHHHHHHHHHccccCcEEEEE
Q 017080 197 RRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
|.-+.+++...+|||+.++=.
T Consensus 247 -PkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 247 -PKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred -ceehhHHHHHhcCCCcEEEEE
Confidence 788999999999999876544
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.22 E-value=3.8 Score=36.99 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=51.9
Q ss_pred chHHHHHHHhC----C-CCCCEEEEECCccCccc---c-cCCCceEEEEeCCHHHHHHHHHc---C------CeEEE-ee
Q 017080 109 KWPKVATFLNS----L-PSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR---G------HEVLV-AD 169 (377)
Q Consensus 109 ~~~~~~~~l~~----~-~~~~~vLDiGcG~G~~~---~-~~~~~~v~gvD~s~~~~~~a~~~---~------~~~~~-~d 169 (377)
....+.++|.. + .+..++||||.|.-=.- . ...+.+.+|.|+++..++.|+.. | ++... -|
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~ 139 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKD 139 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccC
Confidence 33445555542 2 24568999998864321 1 24577999999999999988865 1 33322 12
Q ss_pred CCC-CC---CCCCceeEEEeccchhh
Q 017080 170 AVN-LP---YRSDFGDAAISIAVLHH 191 (377)
Q Consensus 170 ~~~-~~---~~~~~fD~V~~~~~l~h 191 (377)
-.. ++ -..+.||+++|+=-+|-
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccccccceeeeEecCCCcch
Confidence 111 11 12578999999988773
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=84.05 E-value=4.3 Score=39.40 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=60.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeC-CCC-----CCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADA-VNL-----PYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~-----~~~~~~fD~V~~~~ 187 (377)
.+.++.+||=.|+|. |.++. ...++ .|+++|.++...+.+++.+........ .++ ....+.+|+|+-.-
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 467788999999865 44432 25577 699999999999999887654332111 111 01123588887532
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+....+.|+++|.+++.-
T Consensus 268 -----G~----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 268 -----GS----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -----CC----hHHHHHHHHHHhcCCEEEEEc
Confidence 12 246777888999999988764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=83.98 E-value=2 Score=34.64 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=53.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------C-CCCCceeEEEeccchhhcCChHHHHHHHHHHHHcccc
Q 017080 140 NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------P-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK 211 (377)
Q Consensus 140 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-------~-~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lkp 211 (377)
..+++|+++|.++.-.+.+++.+...+. |..+. . .+...+|+|+-.-. . ...++....+|+|
T Consensus 12 ~~G~~vi~~~~~~~k~~~~~~~Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----~~~~~~~~~~l~~ 81 (130)
T PF00107_consen 12 AMGAKVIATDRSEEKLELAKELGADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----GDTLQEAIKLLRP 81 (130)
T ss_dssp HTTSEEEEEESSHHHHHHHHHTTESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----HHHHHHHHHHEEE
T ss_pred HcCCEEEEEECCHHHHHHHHhhcccccc-cccccccccccccccccccceEEEEecC-----c----HHHHHHHHHHhcc
Confidence 3448999999999999999998754443 23222 1 23357999887532 2 4688999999999
Q ss_pred CcEEEEEEcCC
Q 017080 212 GSLVLITVWAV 222 (377)
Q Consensus 212 gG~l~i~~~~~ 222 (377)
+|.+++.-...
T Consensus 82 ~G~~v~vg~~~ 92 (130)
T PF00107_consen 82 GGRIVVVGVYG 92 (130)
T ss_dssp EEEEEEESSTS
T ss_pred CCEEEEEEccC
Confidence 99999986554
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=83.75 E-value=2.3 Score=42.66 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=62.2
Q ss_pred hHHHHHHHhCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEe
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
+..+.+.....-.|++|+=+|+|. |.... ...+++|+++|.++.....+...+..+. ++++. -...|+|++
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv--~leEa---l~~ADVVI~ 315 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL--TLEDV---VSEADIFVT 315 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec--cHHHH---HhhCCEEEE
Confidence 444444444445689999999998 66432 2457799999999876556655555432 22221 134699887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.-. + ...+..+....+||||+++..-.
T Consensus 316 tTG-----t---~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 316 TTG-----N---KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCC-----C---ccchHHHHHhcCCCCCEEEEcCC
Confidence 322 1 22234778889999999887743
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.68 E-value=3.3 Score=38.46 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~~~l 189 (377)
.++.+||=+|+|. |.++. ...++. |+++|.++.-.+.+++.+...... ..... .....+|+|+-..
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~vid~~-- 195 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDVALEFS-- 195 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCEEEECC--
Confidence 4788999999875 54432 245665 999999999999988876543321 11110 1123578876632
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...++.+.+.|+|+|.+++.-
T Consensus 196 ---G~----~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 196 ---GA----TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ---CC----hHHHHHHHHHhcCCCEEEEec
Confidence 12 356788899999999988765
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=83.65 E-value=1.4 Score=41.58 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=65.8
Q ss_pred CEEEEECCccCc-c------c----cc----C---------CCceEEEEeCCHHHH--HHHHH-----------------
Q 017080 124 SLVLDAGCGNGK-Y------L----GL----N---------PDCFFVGCDISPSLI--KICVD----------------- 160 (377)
Q Consensus 124 ~~vLDiGcG~G~-~------~----~~----~---------~~~~v~gvD~s~~~~--~~a~~----------------- 160 (377)
.+||-||.|.|. + . .. . +...++.||+.+..- .....
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999976 1 1 00 1 225899999987432 11110
Q ss_pred -c------CCeEEEeeCCCCCCCC-------CceeEEEeccchhhcC--ChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 161 -R------GHEVLVADAVNLPYRS-------DFGDAAISIAVLHHLS--TESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 161 -~------~~~~~~~d~~~~~~~~-------~~fD~V~~~~~l~h~~--~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. ++.|.+.|+..+..++ ...|+|...+++.-+- ...+-.++|..+...++||-.++|.+-.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 0 4788899998765322 2468888877775431 1122578999999999999999998754
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.48 E-value=2.2 Score=44.35 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=63.7
Q ss_pred CEEEEECCccCcccc--------cCCCceEEEEeCCHHHHHHHHH---c-----C--------CeEEEeeCCCCCCCC--
Q 017080 124 SLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVD---R-----G--------HEVLVADAVNLPYRS-- 177 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~--------~~~~~~v~gvD~s~~~~~~a~~---~-----~--------~~~~~~d~~~~~~~~-- 177 (377)
..|+=+|+|-|-+.. .....+|++|+-++........ + + |+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 368999999998642 1345699999999653222211 1 1 688999999875332
Q ss_pred ---------CceeEEEeccchhhcCChHHHHHHHHHHHHcccc----CcE
Q 017080 178 ---------DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK----GSL 214 (377)
Q Consensus 178 ---------~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lkp----gG~ 214 (377)
+++|+||+ ..|..+-|.|.-++.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36899887 5566676766567899999999987 776
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.25 E-value=1.2 Score=40.90 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=42.6
Q ss_pred CCEEEEECCccCcccc-------c-----CCCceEEEEeCCHHHHHHHHHc--C---------CeEE-EeeCCCCCCCCC
Q 017080 123 GSLVLDAGCGNGKYLG-------L-----NPDCFFVGCDISPSLIKICVDR--G---------HEVL-VADAVNLPYRSD 178 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~-------~-----~~~~~v~gvD~s~~~~~~a~~~--~---------~~~~-~~d~~~~~~~~~ 178 (377)
.-+|+|+|.|+|.++. . +...+++-||+||.+.+.-+++ + .++. ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~~l~~~p---- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLDDLEEVP---- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEESSGGCS-----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhhhhhccc----
Confidence 3699999999999742 1 2346999999999998877766 1 1111 12222222
Q ss_pred ceeEEEeccchhhcCC
Q 017080 179 FGDAAISIAVLHHLST 194 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~ 194 (377)
..-+|+++.++..+|-
T Consensus 95 ~~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 95 FPGFIIANELFDALPV 110 (252)
T ss_dssp CCEEEEEESSGGGS--
T ss_pred CCEEEEEeeehhcCce
Confidence 4468899999998875
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=82.90 E-value=6.4 Score=30.98 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 141 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.+..|+.+|.++..++.+++.++.++.+|..+.. ..-...|.|++.. ++++ ....+....+-+.|...++
T Consensus 20 ~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~-~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDE-ENLLIALLARELNPDIRII 93 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHH-HHHHHHHHHHHHTTTSEEE
T ss_pred CCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc-----CCHH-HHHHHHHHHHHHCCCCeEE
Confidence 4458999999999999999999999999998742 2235678777743 2433 4556666777778888877
Q ss_pred EEEc
Q 017080 217 ITVW 220 (377)
Q Consensus 217 i~~~ 220 (377)
....
T Consensus 94 ~~~~ 97 (116)
T PF02254_consen 94 ARVN 97 (116)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=82.22 E-value=4.3 Score=40.09 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
..|.+|+=+|+|. |.... ...+++|+++|.++.....+...+..+. +.++. -...|+|++.- ..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~--~leea---l~~aDVVItaT-----G~-- 260 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM--TMEEA---AKIGDIFITAT-----GN-- 260 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC--CHHHH---HhcCCEEEECC-----CC--
Confidence 5789999999998 66432 2567899999999876666655554332 22221 13459987742 12
Q ss_pred HHHHHHH-HHHHccccCcEEEEEE
Q 017080 197 RRKKAIE-ELVRVVKKGSLVLITV 219 (377)
Q Consensus 197 ~~~~~l~-~~~r~LkpgG~l~i~~ 219 (377)
..++. +....+|+|++++..-
T Consensus 261 --~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 261 --KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred --HHHHHHHHHhcCCCCcEEEEEC
Confidence 34454 4888999999887764
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=80.81 E-value=2.7 Score=39.28 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=48.1
Q ss_pred EEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCC--CCceeEEEeccchh
Q 017080 125 LVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVNLPYR--SDFGDAAISIAVLH 190 (377)
Q Consensus 125 ~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~--~~~fD~V~~~~~l~ 190 (377)
+|+|+-||.|.+.. ...+. .+.++|+++.+++..+.+ .-.++.+|+.++... ...+|+++..-...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCCh
Confidence 69999999998742 23345 577899999999988887 233577888876532 35799999865444
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.70 E-value=8.2 Score=36.43 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=61.0
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~ 186 (377)
..+.++.+||-+|+|. |..+. ...+.. ++.++.++...+.+++.++...... .+.. ...+.+|+++..
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDP-SREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecC-CCCCHHHHHHhcCCCCcEEEEC
Confidence 4567888999998653 44331 245665 8999999999888877666433222 2111 134568999864
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. . ...+.++.+.|+++|.++....
T Consensus 234 ~~-----~----~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 234 TG-----V----PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CC-----C----hHHHHHHHHHHhcCCEEEEEec
Confidence 21 1 2567788899999999877643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.45 E-value=2.5 Score=40.86 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=33.2
Q ss_pred HhCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHH
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~ 160 (377)
+....+-..|+|+|.|.|.+++ ...+..|.+||-|....+.|+.
T Consensus 148 i~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 148 ISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3333445689999999999765 4778899999999776665553
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=80.29 E-value=7.7 Score=36.86 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCC-----C-C-CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN-----L-P-YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~-----~-~-~~~~~fD~V~~~ 186 (377)
.+.++.+||=+|+|. |.++. ...+++ |++++.++...+.+++.+...+. |..+ + . .....+|+|+-.
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVI-NSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-cCCcchHHHHHHHhCCCCCCEEEEC
Confidence 456788999998864 44332 255676 99999999999988877654332 1111 1 0 112368988754
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. .. ...+....+.|+++|.+++.-.
T Consensus 239 ~-----g~----~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 S-----GN----TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred C-----CC----HHHHHHHHHHhhcCCEEEEEcC
Confidence 2 22 2456777889999999887643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=80.14 E-value=11 Score=35.56 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=59.9
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC-CCCCceeEEEeccchhhc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-YRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~~-~~~~~fD~V~~~~~l~h~ 192 (377)
.+.++.+||-+|+|. |..+. ...+.+|++++.++...+.+++.+......+... .. -..+.+|+++...
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~----- 233 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV----- 233 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-----
Confidence 567788999999873 55432 2567799999999999888866554333222111 10 0124588887642
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+..+.+.|+++|.++...
T Consensus 234 ~~----~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 VS----GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred Cc----HHHHHHHHHhcccCCEEEEEC
Confidence 11 246777889999999888764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=80.07 E-value=4.5 Score=38.16 Aligned_cols=85 Identities=18% Similarity=0.088 Sum_probs=54.7
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.++.+||=+|||. |.++. ...+++ |+++|.++..++.+.... ..|.... ..+.+|+|+-.-. .
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----~i~~~~~--~~~g~Dvvid~~G-----~- 210 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----VLDPEKD--PRRDYRAIYDASG-----D- 210 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----ccChhhc--cCCCCCEEEECCC-----C-
Confidence 3567899999876 66532 245664 777899988877776431 1121111 1346888876522 2
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEc
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+..+.+.|+|||.+++.-.
T Consensus 211 ---~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 ---PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ---HHHHHHHHHhhhcCcEEEEEee
Confidence 3467888899999999987643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 377 | ||||
| 3ege_A | 261 | Crystal Structure Of Putative Methyltransferase Fro | 1e-07 |
| >pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From Antibiotic Biosynthesis Pathway (Yp_324569.1) From Anabaena Variabilis Atcc 29413 At 2.40 A Resolution Length = 261 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 4e-39
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 11/178 (6%)
Query: 94 VYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDCFFVGCD 149
+Y++I +S TR V +N L P GS++ D G G G Y N F +
Sbjct: 4 IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE 63
Query: 150 ISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 208
S + + V E A NL D ISI +HH S + + +E+ R+
Sbjct: 64 PSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEK---SFQEMQRI 120
Query: 209 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA--RTLESIP 264
++ G++VL+ + + + + + P + ++ R +E+IP
Sbjct: 121 IRDGTIVLL-TFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIP 177
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 8e-21
Identities = 34/184 (18%), Positives = 72/184 (39%), Gaps = 21/184 (11%)
Query: 85 ELEKKYVHRVYDAIAP----HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN 140
++ +++ F RFA ++ LP G ++ G G G++
Sbjct: 7 HHHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGR-GVEIGVGTGRFAVPL 65
Query: 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
+G + S + +I RG VL A NLP + + D A+ + + + ++
Sbjct: 66 KIK--IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV---DDPER 120
Query: 201 AIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPR-VRSPSART 259
A++E R++KKG +++ + + + L ++Y + + R S
Sbjct: 121 ALKEAYRILKKGGYLIVGIVD----------RESFLGREYEKNKEKSVFYKNARFFSTEE 170
Query: 260 LESI 263
L +
Sbjct: 171 LMDL 174
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 1e-20
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 102 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKIC 158
+ R + + + N VLD G G + + G +IS +K
Sbjct: 3 KTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKA 62
Query: 159 VDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
+ E + D LP++ + S + H+ K+AI+E+ RV+K G
Sbjct: 63 ENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKND-VKEAIDEIKRVLKPG 121
Query: 213 SLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPR 251
L I + E + K +++ G
Sbjct: 122 GLACINFLTTKDERYNKGEKIGEGE--FLQLERGEKVIH 158
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 8e-20
Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 94 VYDAIAPHF------SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVG 147
+ ++A + + + LP G +L+ G G G +L P VG
Sbjct: 2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPYPQKVG 61
Query: 148 CDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
+ S +++ + R E + A LP+ + D + L + ++ + E
Sbjct: 62 VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV---EDVERVLLEA 118
Query: 206 VRVVKKGSLVLITVWA 221
RV++ G +++ V
Sbjct: 119 RRVLRPGGALVVGVLE 134
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 2e-18
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYL---GLNPDCFFV 146
R Y A ++ R + + FL LP+G+ +L+ GCG G + + G +
Sbjct: 15 RFYRGNATAYAE-RQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDV----D 69
Query: 147 GCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
D SP L R G V L + DA + A L H+ ++ +
Sbjct: 70 ATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAY-DAVWAHACLLHVP-RDELADVLKLI 127
Query: 206 VRVVKKGSLVLITVWAVEQE 225
R +K G L + + E E
Sbjct: 128 WRALKPGGLFYASYKSGEGE 147
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-17
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 76 SSSSIKSTPELEKKYVHRVYDAIAPH----FSSTRFAKWPKV--ATFLNSLPSGSLVLDA 129
S I K YD IA + + ++ + ++ + L + VLD
Sbjct: 2 GSDKIHHHHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDL 61
Query: 130 GCGNGKY-LGLNPDCFFV-GCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISI 186
G G GK+ L L F V D S ++++ ++G V+ A A +LP+ S +A +++
Sbjct: 62 GGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLAL 121
Query: 187 A-VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
VL ++ + KA E+ RV+ L++ TV
Sbjct: 122 GDVLSYVE---NKDKAFSEIRRVLVPDGLLIATV 152
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-17
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 21/167 (12%)
Query: 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCF 144
+YVH Y S + K+ P G+ VL+AGCG G NPD
Sbjct: 5 EYVHG-YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAE 63
Query: 145 FVGCDISPSLIKI----CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
DISP ++ G + L A+ +LP+ D VL HL
Sbjct: 64 ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHL---QS 120
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
++A++ L +V+K G + + + P +K +E W
Sbjct: 121 PEEALKSLKKVLKPGGTITVIEGDHGS------CYFHPEGKKAIEAW 161
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 2e-17
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 15/146 (10%)
Query: 88 KKYVHRVYDAIAPHFSSTRFAKWPK------VATFLNSLPSGSLVLDAGCGNGKY-LGLN 140
+ + +D+ A ++ W + F + + VLD GCG+G L+
Sbjct: 13 HESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS 72
Query: 141 PDCFFV-GCDISPSLIKICVDRGH----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
+ G DIS +I+ +RG + D +LP+ ++ +A ++I L
Sbjct: 73 RTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT--- 129
Query: 196 SRRKKAIEELVRVVKKGSLVLITVWA 221
+A+ E+ RV+K I +
Sbjct: 130 EEPLRALNEIKRVLKSDGYACIAILG 155
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 1e-16
Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 91 VHRVYDAIAPHFSSTR----------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL- 139
+ ++D A + S FA + + + + G+ VL+ G G G
Sbjct: 5 FNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGN-VLEFGVGTGNLTNKL 63
Query: 140 -NPDCFFVGCDISPSLIKICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
G + S + I ++ + D ++ + D +S HHL T+
Sbjct: 64 LLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSI-DTIVSTYAFHHL-TD 121
Query: 196 SRRKKAIEELVRVVKKGSLVLI 217
+ AI + +++ KG ++
Sbjct: 122 DEKNVAIAKYSQLLNKGGKIVF 143
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 2e-16
Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 18/169 (10%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNS-----LPSGSLVLDAGCGNGKYLGL--NPDCFFVG 147
Y + P ++ ++ L + VLD CG G + L + VG
Sbjct: 6 YYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVG 65
Query: 148 CDISPSLIKI----CVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
DIS +I+ R V +V DA L + D I I + H +
Sbjct: 66 VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF-EPLELNQV 124
Query: 202 IEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSP 250
+E+ RV+K ++ + + L + WI P
Sbjct: 125 FKEVRRVLKPSGKFIMYFTDLRELLPRLKESLV----VGQKYWISKVIP 169
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-16
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 11/134 (8%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGC 148
YD F + + + +LD G G G + P+ F
Sbjct: 15 GKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLV 74
Query: 149 DISPSLIKICVDRGH-----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203
D+S +++I +R + + AD + + D +S +HHL E +K+ +
Sbjct: 75 DMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSIHHLEDE-DKKELYK 132
Query: 204 ELVRVVKKGSLVLI 217
++K+ + +
Sbjct: 133 RSYSILKESGIFIN 146
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 5e-16
Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 18/149 (12%)
Query: 91 VHRVYDAIAPHFS---STRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKY------LGL 139
V + Y + T + + ++LD G G G++ LG
Sbjct: 5 VSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH 64
Query: 140 NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
G + + L+++ +L ++ L H+
Sbjct: 65 QI----EGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM-GPGE 119
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQED 226
A+ L V+ G +L++ ++ +
Sbjct: 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE 148
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 8e-16
Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 11/138 (7%)
Query: 93 RVYDAIAPHFSSTR----FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-LNPDCFFV- 146
Y A A + +T + P L + VL+ G G + L+ V
Sbjct: 13 SYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVT 72
Query: 147 GCDISPSLIKICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203
D S +I G E D + + DA L H+ + R + E
Sbjct: 73 ALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQW-DAVFFAHWLAHV-PDDRFEAFWE 130
Query: 204 ELVRVVKKGSLVLITVWA 221
+ V G +V
Sbjct: 131 SVRSAVAPGGVVEFVDVT 148
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 9e-16
Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 17/179 (9%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISP 152
YD + H +A+ ++ + L+ G G G+ ++ D
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADA 71
Query: 153 SLIKI------CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV 206
+++++ VDR +V+ ADA +P + I + + H + K + E +
Sbjct: 72 AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV---PDWPKVLAEAI 128
Query: 207 RVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265
RV+K G +L W + L +++ G P R A+ L+ + E
Sbjct: 129 RVLKPGGALLE-GWDQAEASPEWT-----LQERWRAFAAEEGFPVERGLHAKRLKEVEE 181
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 2e-15
Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 82 STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----- 136
+ P + Y R + A A+ P G+ +LDAGCG G+
Sbjct: 11 NNPAHSENYAQRWRNLAAAGNDIYGEARL-----IDAMAPRGAKILDAGCGQGRIGGYLS 65
Query: 137 -LGLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193
G + +G D+ P LI +V D D +S +
Sbjct: 66 KQGHDV----LGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121
Query: 194 TESRRKKAIEELVRVVKKGSLVLITVWA 221
E R+ A+ + R + +I A
Sbjct: 122 AEDGREPALANIHRALGADGRAVIGFGA 149
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 18/186 (9%)
Query: 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFF 145
K + D I+ + + + + +G+ +D G G G L D
Sbjct: 11 KKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIALAKQSDFSI 69
Query: 146 VGCDISPSLIKI----CVDRGH----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
D S + +I D +++ D N+P ++ D +S +
Sbjct: 70 RALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW---ED 126
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA 257
A E+ R++K G I +E L + + +W + +
Sbjct: 127 VATAFREIYRILKSGGKTYIGGGFGNKE---LRDSISAEMIRKNPDWKEFNRKNISQENV 183
Query: 258 RTLESI 263
+++
Sbjct: 184 ERFQNV 189
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 1e-13
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 24/167 (14%)
Query: 87 EKKYVHRVYDAIAPHF--SSTRF-----AKWPKVATFLNSLPSGSLVLDAGCGNGK---Y 136
E K +H + F + R K +F+++L SL+ D GCG G
Sbjct: 4 ENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMV 63
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVADAVNLPYRSDFGDAAISIAV 188
L + G D I I + +V +LP+R++ D S
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123
Query: 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT--VWAVEQEDKSLVTKW 233
++++ ++ + E + +KKG + ++ W ++ + W
Sbjct: 124 IYNIG----FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFW 166
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-13
Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 18/170 (10%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-- 134
S++ S + + ++ + + + A K +F+N L + + D GCG G
Sbjct: 2 SNNNTSIHDFDFSFICNYFKLLKRQGPGSPEA-TRKAVSFINELTDDAKIADIGCGTGGQ 60
Query: 135 -KYLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVADAVNLPYRSDFGDAAIS 185
+L G D+ P I+I + + + NLP++++ D S
Sbjct: 61 TLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWS 120
Query: 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT--VWAVEQEDKSLVTKW 233
++++ ++ + E + +KKG + ++ W + + W
Sbjct: 121 EGAIYNIG----FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFW 166
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-13
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKI----CVDRGHEV--LVA 168
+ ++D GCG G + + G D +L+ ++ L
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG 79
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
DA + + D AI A L H+ + + +++++ VKKG ++
Sbjct: 80 DATEIELNDKY-DIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICF 125
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-13
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFV-GCDIS 151
VYD + + +W VA L + G + D GCG G L D + V G D+S
Sbjct: 9 YVYDEL---MQDVPYPEW--VAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLS 63
Query: 152 PSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
+++I ++ E V D L I L++L TE+ K+ +
Sbjct: 64 EEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSA 123
Query: 206 VRVVKKGSLVLITVWAVEQEDK 227
R++ G +L V + + +
Sbjct: 124 ARLLTDGGKLLFDVHSPYKMET 145
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-13
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 106 RFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLI----KIC 158
A+WP + L + G ++D GCG G ++ + + +G D+S ++
Sbjct: 28 GAAEWPALRAMLPEVG-GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAG 86
Query: 159 VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
D G AD L D D A S LH++ + + + + G + +
Sbjct: 87 PDTGITYERADLDKLHLPQDSFDLAYSSLALHYV---EDVARLFRTVHQALSPGGHFVFS 143
Query: 219 VW 220
Sbjct: 144 TE 145
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 5e-13
Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 19/152 (12%)
Query: 82 STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL---- 137
+ LE+ + R+ +A R + + L G +V CG L
Sbjct: 83 ALAPLERVFYERLPAVLATR---ERHGHFRRAL--QRHLRPGCVVASVPCGWMSELLALD 137
Query: 138 -GLNPDCFFVGCDISPSLIKIC--------VDRGHEVLVADAVNLPYRSDFGDAAISIAV 188
P VG D P + + + DA L R + D S +
Sbjct: 138 YSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGY-DLLTSNGL 196
Query: 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ ++R + + +K G ++ +
Sbjct: 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFL 228
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 8e-13
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 14/124 (11%)
Query: 110 WPKVATFLNSLP--SGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDRGH 163
+ +L ++ +++D GCGNG Y L DI+ +K ++
Sbjct: 3 LERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKL--YCIDINVIALKEVKEKFD 60
Query: 164 EVL-VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222
V+ ++D +P S D + H + ++ I E+ R++K V+I W
Sbjct: 61 SVITLSDPKEIPDNS-V-DFILFANSFHDMD---DKQHVISEVKRILKDDGRVIIIDWRK 115
Query: 223 EQED 226
E
Sbjct: 116 ENTG 119
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 3e-12
Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 21/200 (10%)
Query: 60 GESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS 119
G IH E+ + + + + +Y S + + LN
Sbjct: 2 GSDKIHHHHHHENLYFQG--MTNLGTAKNFWDATLYQ----DKHSFVWQYGEDLLQLLNP 55
Query: 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPY 175
P G +LD GCG G+ +G D + ++I+ VADA N
Sbjct: 56 QP-GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV 114
Query: 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP 235
DA S A+LH + + AI + + +K G + + K ++
Sbjct: 115 DKPL-DAVFSNAMLHWV---KEPEAAIASIHQALKSGGRFVAEFGG-KGNIKYILEAL-- 167
Query: 236 LTQKYVEEWIGPGSPRVRSP 255
E +G +P+ +P
Sbjct: 168 ---YNALETLGIHNPQALNP 184
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 5e-12
Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 16/155 (10%)
Query: 76 SSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAG 130
SS++ + + +YD + + + A L +L P + +LD
Sbjct: 4 SSATAGPQADYSGEIAE-LYDLVHQG-KGKDYHRE---AADLAALVRRHSPKAASLLDVA 58
Query: 131 CGNGKY-LGLNPDCFFV-GCDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISI 186
CG G + L V G ++S ++ I R + D + F A +
Sbjct: 59 CGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRF-SAVTCM 117
Query: 187 A-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ HL+ ++ A+E V +V++ W
Sbjct: 118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 5e-12
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 12/133 (9%)
Query: 95 YDAIAPHFSSTR-FAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDI 150
Y + + +W ++ L VLD GCG G Y + +G D+
Sbjct: 17 YSQMPRSKEGLKAAGEWHELKKMLPDFN-QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDL 75
Query: 151 SPSLIKI----CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV 206
S ++ ++ D + +S LH++++ +++
Sbjct: 76 SERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS---FDDICKKVY 132
Query: 207 RVVKKGSLVLITV 219
+K + +V
Sbjct: 133 INLKSSGSFIFSV 145
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 7e-12
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 120 LPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGH-----EVLVADAV 171
L S VLD G G G Y+ G DI +++ + +R D +
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDIL 112
Query: 172 NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ + D S + LS E+ + K ++ + +K +LIT +
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLEN-KNKLFQKCYKWLKPTGTLLITDY 160
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-11
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISP 152
Y F +R ++ ++ VLD GCG G++L L +G DI+
Sbjct: 14 YFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINE 73
Query: 153 SLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK 210
+IK C + + V+ +DA+ + D + + HL E R + + +K
Sbjct: 74 DMIKFCEGKFN-VVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE-RLFELLSLCYSKMK 131
Query: 211 KGSLVLITV 219
S ++I
Sbjct: 132 YSSYIVIES 140
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 29/152 (19%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYL---GLN 140
++ Y Y+ H +V + + G LD GCGNG YL G +
Sbjct: 7 DENYFTDKYELTRTH---------SEVLEAVKVVKPGK-TLDLGCGNGRNSLYLAANGYD 56
Query: 141 PDCFFVGCDISPSLI----KICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLS 193
D + I +I V D NL + + D +S VL L
Sbjct: 57 ----VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY-DFILSTVVLMFLE 111
Query: 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225
+ I + R K G LI +
Sbjct: 112 AK-TIPGLIANMQRCTKPGGYNLIVAAMDTAD 142
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAGCGNGKY-LGLNPDCFFV 146
VYD R + A+ + L P S +LD CG G + +
Sbjct: 10 DVYDLFYLG----RGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDT 65
Query: 147 -GCDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRKKAI 202
G ++S ++ R + D + F A +S+ + +L T A+
Sbjct: 66 AGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKF-SAVVSMFSSVGYLKTTEELGAAV 124
Query: 203 EELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE 243
++ G +V++ W ++ W +
Sbjct: 125 ASFAEHLEPGGVVVVEPWWF---PETFADGWVSADVVRRDG 162
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 22/150 (14%)
Query: 120 LPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVA 168
+ SG VLD GCG GK L D G IS + R A
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228
DA++LP+ DA ++ LHH+ R +A+ E+ RV++ G V I +
Sbjct: 119 DAMDLPFEDASFDAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADFV------- 168
Query: 229 LVTKWTPLTQKYVEEWI-GPGSPRVRSPSA 257
L+ ++ V+ + G G +
Sbjct: 169 LLAPVEGAKKEAVDAFRAGGGVLSLGGIDE 198
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 4e-11
Identities = 60/373 (16%), Positives = 103/373 (27%), Gaps = 107/373 (28%)
Query: 84 PELEKK----YVHRVY---DAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGK 135
P + + R+Y A + +R + K+ L L P+ ++++D G+GK
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 136 ------------YLGLNPDCFF---VGCDISPSLI-----KIC--VDRGHEVLVADAVNL 173
F + SP + K+ +D + N+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELV-------RVVKK---GSLVLIT----- 218
R A + L + + LV + +L+T
Sbjct: 224 KLRIHSIQAELR-----RLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 219 ----VWAVEQEDKSLVTKWTPLTQKYVEE----WIG------P-----GSPRVRSPSART 259
+ A SL LT V+ ++ P +PR S A +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 260 LESIPETEDNGSEEQGKEPKQSVPDKLWESI--SLTSQSEDD--------SVISQDVKII 309
+ T DN K DKL I SL + SV I
Sbjct: 337 IRDGLATWDNW--------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 310 TNQQEYFVPWH-LPYHRAEVSGASACALAN-GLAKKDDKKGAV-VYNRY--YHVFCDGE- 363
T W + L L +K K+ + + + Y V + E
Sbjct: 389 TILLSLI--WFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 364 ------LERYALL 370
++ Y +
Sbjct: 444 ALHRSIVDHYNIP 456
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 3e-09
Identities = 72/462 (15%), Positives = 119/462 (25%), Gaps = 172/462 (37%)
Query: 6 VFDVLRATR-----CFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADG 60
DV + + F FW + NC E ++
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW------LNLKNC--------NSPETVLEMLQKLL------ 206
Query: 61 ESSIHSVSTGEDQRCS-SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS 119
+ + R SS+IK + + R S + N
Sbjct: 207 ----YQIDPNWTSRSDHSSNIKLRIHSIQAELRR-------LLKSKPYE---------NC 246
Query: 120 LPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICV---DRGHEVLVADAVNLPYR 176
L LVL N K + F + C KI + + V D ++
Sbjct: 247 L----LVLLNVQ-NAKAW----NAFNLSC-------KILLTTRFKQ----VTDFLSAATT 286
Query: 177 SDFGDAAISIAVLHHLST----ESRR------KKAIEELVRVVKKGS-LVLITVWAVEQE 225
+ I++ HH T E + ++L R V + L + ++
Sbjct: 287 TH-------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 226 DKSLVTKWTPLTQKYVEEWIG-------PGSPR------------VRSPSARTLESI--- 263
+ W + + I P R P+ L I
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFD 398
Query: 264 PETED---------NGS--EEQGKEPKQSVPDKLWESISLTSQSEDD-----SVISQDVK 307
D S E+Q KE S+P + L + E++ S++
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSIVDHYNI 455
Query: 308 IITNQQEYFVP--------WHLPYH-----RAE--------------------VSGASAC 334
T + +P H+ +H E +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 335 ALANGLAKKDDKKGAVVYNRYYHVFCD--GELERY--ALLSF 372
A + L K Y Y CD + ER A+L F
Sbjct: 516 ASGSILNTLQQLK---FYKPY---ICDNDPKYERLVNAILDF 551
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 4e-11
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 17/138 (12%)
Query: 80 IKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL 139
+ PE Y HR + + + ++A L P+ +V D GCG+ +
Sbjct: 29 FQEDPEAFLLY-HRGFQSQVKKWPLQP---VDRIARDLRQRPASLVVADFGCGDCRLASS 84
Query: 140 NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199
+ D++ V V D +P + D A+ L + +
Sbjct: 85 IRN-PVHCFDLAS--------LDPRVTVCDMAQVPLEDESVDVAVFCLSLMG----TNIR 131
Query: 200 KAIEELVRVVKKGSLVLI 217
+EE RV+K G L+ +
Sbjct: 132 DFLEEANRVLKPGGLLKV 149
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 6e-11
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 90 YVHRVYDAIAPHF-SSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNG----KYLGLNPD 142
+++ + +S AK +A + +L VLD G G +
Sbjct: 2 GSDKIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK 61
Query: 143 CFFVGCDISPSLIKI----CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
V D++ ++K+ GH E + DA +P+ + HH
Sbjct: 62 V--VAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF--- 116
Query: 196 SRRKKAIEELVRVVKKGSLVLITVWA 221
+ E RV+KKG +L+ +
Sbjct: 117 PNPASFVSEAYRVLKKGGQLLLVDNS 142
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 7e-11
Identities = 28/167 (16%), Positives = 42/167 (25%), Gaps = 21/167 (12%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGK---YLGLNPD 142
E +Y + Y A F + L L +L GCGN L L
Sbjct: 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGF 65
Query: 143 CFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
D S ++ D L + S D + L L R
Sbjct: 66 PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGER 125
Query: 198 ------------RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTK 232
+ + E+ RV+ G + A +
Sbjct: 126 DPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQ 172
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 8e-11
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 14/112 (12%)
Query: 120 LPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVA 168
L + LD G G G +L +I+P K + ++ V
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ +P + D S H + K +E RV+K ++ IT
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAITDP 188
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-10
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 20/151 (13%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAGCGNGKY-LGLNPDCFFV 146
+YD + + + KW + F+ LD CG G L P
Sbjct: 8 HIYDKL--IRADVDYKKW---SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNT 62
Query: 147 -GCDISPSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIA-VLHHLSTESRR 198
D+S ++ ++ + D NL F D +++
Sbjct: 63 WAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKF-DLITCCLDSTNYIIDSDDL 121
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
KK + + +K+G + + + + + + L
Sbjct: 122 KKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-10
Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGHEV--LVADAVNLP 174
+ VLD GCG G Y P+ G D+S IK R +V VA + LP
Sbjct: 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP 143
Query: 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
+ DA I I EEL RVVK G V+
Sbjct: 144 FSDTSMDAIIRIYAPCKA----------EELARVVKPGGWVITATPG 180
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 34/170 (20%), Positives = 52/170 (30%), Gaps = 23/170 (13%)
Query: 91 VHRVYDA-IAPHFSSTRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKYLGL-----NPD 142
+ +D + L G VLD G G G YL
Sbjct: 3 LAHKFDPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEK 62
Query: 143 CFFVGCDISPSLIKICVDRGH-------EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
D+ ++ ++ + EVL ++ +P + D H L
Sbjct: 63 GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHEL--- 119
Query: 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245
S K +EEL RV K + + I W K K P + Y E +
Sbjct: 120 SEPLKFLEELKRVAKPFAYLAIIDW-----KKEERDKGPPPEEVYSEWEV 164
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 20/162 (12%)
Query: 91 VHRVYDAIAPH---FSSTRFAKWPKVATFLNSL------PSGSLVLDAGCGNGKY-LGLN 140
++ +Y +A + R + F+ + VLD CG G L L
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60
Query: 141 PDCFFV-GCDISPSLIKI----CVDRGHEV--LVADAVNLPYRSDFGDAAISIA-VLHHL 192
+ V G D+ ++++ +R ++ L D + + ++++F DA + +
Sbjct: 61 ERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-DAVTMFFSTIMYF 119
Query: 193 STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234
E R K ++ +K G + + + W
Sbjct: 120 DEEDLR-KLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-10
Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 15/170 (8%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDI 150
Y F R + + + D GCG G G D
Sbjct: 11 YLK----FEDERTRPARDLLAQVPLERVLN-GYDLGCGPGNSTELLTDRYGVNVITGIDS 65
Query: 151 SPSLIKICVDRG--HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 208
+++ DR AD D + AV + + +L+
Sbjct: 66 DDDMLEKAADRLPNTNFGKADLATWKPAQKA-DLLYANAVFQWV---PDHLAVLSQLMDQ 121
Query: 209 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
++ G ++ + + QE + T + + + G G R P
Sbjct: 122 LESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPS 171
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 8e-10
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 12/120 (10%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-GCDISPSLIKI----CVDRGHEVL 166
+ F ++D CGNG L+ V G D+S S ++I
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYR 106
Query: 167 VADAVNLPYRSDF----GDAAI-SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
+ D + + GDA I HH+ E R + L ++ K + +
Sbjct: 107 LLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRE-LLGQSLRILLGKQGAMYLIELG 165
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 1e-09
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGH----- 163
V L S+ + V+D GCG G L L G D+S S+++ DR
Sbjct: 21 VVAVLKSVNAKK-VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLP 79
Query: 164 -------EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216
+ + V R DAA I V+ HL E+R + + L + ++++
Sbjct: 80 EMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIV 138
Query: 217 IT 218
T
Sbjct: 139 ST 140
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 29/145 (20%)
Query: 95 YDAIAPHF------SSTRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKYL------GLN 140
+ A + + + L ++ VLD GCG G L G+
Sbjct: 17 WHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIE 76
Query: 141 PDCFFVGCDISPSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLST 194
VG D +L+ G +P D+ D + L H
Sbjct: 77 A----VGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY-DLICANFALLHQDI 131
Query: 195 ESRRKKAIEELVRVVKKGSLVLITV 219
+ + + ++ G ++I
Sbjct: 132 I----ELLSAMRTLLVPGGALVIQT 152
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 32/153 (20%)
Query: 120 LPSGSLVLDAGCGNGKYLGLNPDCFF--------VGCDISPSLIKI----CVDRGH---E 164
+ VLD G G G +G D + ++++ ++G
Sbjct: 19 CRAEHRVLDIGAGAGH------TALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVR 72
Query: 165 VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK-GSLVLITVWAVE 223
A +LP+ D D HH S +KA+ E+ RV+K+ G +L+ +A E
Sbjct: 73 FQQGTAESLPFPDDSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDHYAPE 129
Query: 224 QEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256
++ ++ ++ P R S S
Sbjct: 130 DP---VLDEF----VNHLNRLRDPSHVRESSLS 155
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 2e-09
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 19/166 (11%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-GCDI 150
Y + T A + P VL+ G G+ + V ++
Sbjct: 57 DTYRDLIQDADGTSEA----REFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALEL 112
Query: 151 SPSLIKIC----------VDRGHEVLVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRK 199
S S++ V ++ D F + + ++ L RR
Sbjct: 113 STSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRF-GTVVISSGSINELDEADRR- 170
Query: 200 KAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245
+ ++ G L+++ E + + + L + ++
Sbjct: 171 GLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYV 216
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVAD--AVNLP 174
VLD GC +G G + P + ++ V++ D +++P
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKENGTRV--SGIEAFPEAAEQAKEKLDHVVLGDIETMDMP 88
Query: 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
Y + D I VL HL IE++ +K+ ++L ++
Sbjct: 89 YEEEQFDCVIFGDVLEHL---FDPWAVIEKVKPYIKQNGVILASI 130
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-08
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 11/139 (7%)
Query: 92 HRVYDAIAP-HFSSTRFAKWPKVATFLNSLPSGSL--VLDAGCGNGKYL-GLNPDCFFV- 146
R P F + SL SG++ L+ GC G + L P C +
Sbjct: 18 ERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLT 77
Query: 147 GCDISPSLIKI----CVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
D+ P I H D + F D + VL++L ++ + A
Sbjct: 78 VIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELF-DLIVVAEVLYYLEDMTQMRTA 136
Query: 202 IEELVRVVKKGSLVLITVW 220
I+ +V+++ G ++
Sbjct: 137 IDNMVKMLAPGGHLVFGSA 155
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 116 FLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDRGHEV------ 165
N L +LD GCG+G + G DI+ I++
Sbjct: 24 IHNYLQEDDEILDIGCGSGKISLELASKGYSV--TGIDINSEAIRLAETAARSPGLNQKT 81
Query: 166 ------LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
V +A +L + D A+ A L + R + I+E+ RV+K G+ + +
Sbjct: 82 GGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 33/193 (17%), Positives = 54/193 (27%), Gaps = 25/193 (12%)
Query: 47 VKGASDFCTLGADGESSIHSVSTGEDQRCSS------SSIKSTPELEKKYVHRVYDAIAP 100
+KG F L +G+ + T E + +LE
Sbjct: 40 LKGKLKFYELTENGDVIAEHIFTPESHIPFVEPQAWHRVEALSDDLECTLGFYCKKEDYF 99
Query: 101 HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY------LGLNPDCFFVGCDISPSL 154
A V + VLD GCG G+ LG + D + +
Sbjct: 100 SKKYNTTAIHGDVVDAAKIISPCK-VLDLGCGQGRNSLYLSLLGYD----VTSWDHNENS 154
Query: 155 I----KICVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 208
I + + + D + ++ D +S V L+ E R I+ +
Sbjct: 155 IAFLNETKEKENLNISTALYDINAANIQENY-DFIVSTVVFMFLNRE-RVPSIIKNMKEH 212
Query: 209 VKKGSLVLITVWA 221
G LI
Sbjct: 213 TNVGGYNLIVAAM 225
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-08
Identities = 26/135 (19%), Positives = 38/135 (28%), Gaps = 22/135 (16%)
Query: 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-G 147
Y H ++ F W L + VL+AGCG+G P
Sbjct: 21 YRHPWARVLSGPDPELTFDLW-----LSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAA 75
Query: 148 CDISPSLIKICVDR--GHEVLVADAV-NLPYRSD--FGDAAISIAVLHHLSTESRRKKAI 202
D SP L+K+ +V + LP F +S I
Sbjct: 76 YDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPF-GLIVSRRGPTS---------VI 125
Query: 203 EELVRVVKKGSLVLI 217
L + + L
Sbjct: 126 LRLPELAAPDAHFLY 140
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 18/152 (11%)
Query: 108 AKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGHE 164
A+ + L ++DAGCG G G +S + R E
Sbjct: 103 AQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARE 162
Query: 165 --------VLVADAVNLPYRSDFGDAAISI-AVLHHLSTESRRKKAIEELVRVVKKGSLV 215
V + ++ P+ A+ + + ++ E R +K G
Sbjct: 163 LRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMY-----VDLHDLFSEHSRFLKVGGRY 217
Query: 216 LITVWAVEQEDKSLVTKWTPLTQKYVEEWIGP 247
+ +KW + E I
Sbjct: 218 VTITGCWNPRYGQ-PSKWVSQINAHFECNIHS 248
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 21/144 (14%)
Query: 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE-----------VLV 167
+VLD G G+GK+ NP V D S ++ + L
Sbjct: 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLW 87
Query: 168 ADAVNLPYRSDFGDAAISI---AVLHHLSTESRRKKAIEELVRVVKK-GSLVLITVWAVE 223
A A LP S G+ + + ++L + S + + + V + S ++
Sbjct: 88 ATAERLPPLSGVGELHVLMPWGSLLRGVLGSSP--EMLRGMAAVCRPGASFLVALNLHAW 145
Query: 224 QEDKSLVTKWTPLTQKYVEEWIGP 247
+ V + T +EW+ P
Sbjct: 146 RPSVPEVGEHPEPTPDSADEWLAP 169
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 126 VLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG- 180
V+D GCG G L + + G D+S ++I +R + + + G
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 181 -----------DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
DAA I V+ HL SR L + +++ T
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTT 140
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 25/182 (13%)
Query: 84 PELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPD 142
+ RV+ S R A++ L VLD CG G + L +
Sbjct: 20 DQYADGEAARVWQLYIGDTRS-RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE 78
Query: 143 CFFV-GCDISPSLIKI----CVDRGHEVLV-------ADAVNLPYRSDFG---DAAISIA 187
F V D S ++K +R E A+ + L G DA I +
Sbjct: 79 GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138
Query: 188 -VLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVE 242
HL +S + A++ + +V+ G L++I D L T P +
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR---NYDYILSTGCAPPGKNIYY 195
Query: 243 EW 244
+
Sbjct: 196 KS 197
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 3e-07
Identities = 30/174 (17%), Positives = 47/174 (27%), Gaps = 30/174 (17%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSST-----------------RFAKWPKVATFLNS 119
SS + + + + I H++S + K
Sbjct: 2 DSSSPLKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLY 61
Query: 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVA 168
G VLD GCG G L + G DI+ I R
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121
Query: 169 DAVNLPYRSDFGDAAISI--AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
D+ IS + + ST A + R ++ G ++TV
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 35/180 (19%)
Query: 68 STGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVL 127
S+ + + + + PE +K + + D + +F SL G+ VL
Sbjct: 35 SSADLKTSACKLAAAVPESHRKILADIADEVL-----EKFYGCGSTLPADGSLE-GATVL 88
Query: 128 DAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------------------- 161
D GCG G+ + L +G D+ + +++
Sbjct: 89 DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148
Query: 162 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
G +A A D IS V + + + +E+ RV++ G + +
Sbjct: 149 GFIENLATAEPEGVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSDVY 205
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-07
Identities = 31/237 (13%), Positives = 62/237 (26%), Gaps = 36/237 (15%)
Query: 96 DAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-------KYLGLNPDCFFVGC 148
A A + A +A + G +L+ GCG G +G G
Sbjct: 18 TANARTIQRRQTAHRLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVG--SSGHVTGI 74
Query: 149 DISPSLIKICVDRGH--------------EVLVADAVN---LPYRSDFGDAAISIAVLHH 191
DI+ + G V ++ P D + L +
Sbjct: 75 DIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWY 134
Query: 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP-LTQKYVEEWIGPGSP 250
+ + V + W+++ + + Q +
Sbjct: 135 F---ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVA 191
Query: 251 RVRS-PSARTLESIPETEDNG--SEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
+R+ + TL I DN ++ D WE + + + + +
Sbjct: 192 NIRTLITPDTLAQI--AHDNTWTYTAGTIVEDPTLDDAHWEIATTNALLTELKLSTD 246
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 15/110 (13%)
Query: 120 LPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKI----CVDRGH----EVLVA 168
+ G+ +LD G G+G + G D+S + G +
Sbjct: 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 93
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
DA D A + A E L + +K G ++LI
Sbjct: 94 DAAGYVANEKC-DVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIG 139
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 20/126 (15%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKY------LGLNPDCFFVGCDISPSLIKICVDRGHE-- 164
+ + N +P G +L G G+ LG D S + E
Sbjct: 21 LVSVANQIPQGK-ILCLAEGEGRNACFLASLGYEV----TAVDQSSVGLAKAKQLAQEKG 75
Query: 165 ----VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ ++ + +D + +SI S R++ ++ + +K G + ++ +
Sbjct: 76 VKITTVQSNLADFDIVADAWEGIVSI---FCHLPSSLRQQLYPKVYQGLKPGGVFILEGF 132
Query: 221 AVEQED 226
A EQ
Sbjct: 133 APEQLQ 138
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-06
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 13/134 (9%)
Query: 103 SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKIC- 158
SS +F + + S LD G G G K L L DI+ +
Sbjct: 62 SSRKF--LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAK 119
Query: 159 ---VDRGHEV---LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
+ G V + D D V+ HL T+ + + ++
Sbjct: 120 TYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL-TDQHLAEFLRRCKGSLRPN 178
Query: 213 SLVLITVWAVEQED 226
+++I ++
Sbjct: 179 GIIVIKDNMAQEGV 192
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 11/123 (8%)
Query: 114 ATFLNSLPS--GSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKIC-----VDRGH 163
F+ SLP S LD G G G K L + +++
Sbjct: 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVG 142
Query: 164 EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223
+ ++A + D + +L+ K + + + +
Sbjct: 143 KFILASMETATLPPNTYDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCST 201
Query: 224 QED 226
+
Sbjct: 202 GDR 204
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-06
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 16/132 (12%)
Query: 96 DAIAPHFSST-RFAKWPKVATFL-NSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCD 149
D + H S+ R A T++ ++ S +LD GCG N + D
Sbjct: 21 DLLKIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYD 80
Query: 150 ISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203
I + I + + + Y+ + D + +L L ++ I
Sbjct: 81 IDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTY-DVVFLLKMLPVL---KQQDVNIL 136
Query: 204 ELVRVVKKGSLV 215
+ +++ + V
Sbjct: 137 DFLQLFHTQNFV 148
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 30/161 (18%)
Query: 111 PKVATFLNSL--PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGH 163
++ L++D GCG G L P +G D+S ++IK
Sbjct: 23 SDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKE 82
Query: 164 ---------EVLVADAVNLPYRSDFG------DAAISIAVLHHLSTESRRKKAIEELVRV 208
++ + + + D ++ H E K
Sbjct: 83 GSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE----KFQRSAYAN 138
Query: 209 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQK--YVEEWIGP 247
++K + I W ++ L + Y ++ +GP
Sbjct: 139 LRKDGTIAI--WGYADPIFPDYPEFDDLMIEVPYGKQGLGP 177
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 4e-06
Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 30/163 (18%)
Query: 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGH 163
+ ++ + +D G G+G+ + + + F++G D + +
Sbjct: 15 DELTEI--IGQFDR---VHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69
Query: 164 E-----------VLVADAVNLPYRSDFGDAAISI-----AVLHHLSTESRRKKAIEELVR 207
+ ++A A +LP+ +ISI +L ++ +R + +
Sbjct: 70 KKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNR--DILSNVAD 127
Query: 208 VVKK-GSLVLITVWAVEQEDKSLVTKWTPLTQK--YVEEWIGP 247
+ KK +T ++ E+ + + PL K ++ E
Sbjct: 128 LAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKA 170
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 19/111 (17%)
Query: 126 VLDAGCGNGKYLGL---NPDCF--FVGCDISPSLIKICVDRGH-------------EVLV 167
++D GCG+G L P +G DISP + H +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
+ R D + V+ H+ E + + E+++ + L++ T
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHME-EDQACEFGEKVLSLFHPKLLIVST 834
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-05
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 24/122 (19%)
Query: 120 LPSGSLVLDAGCGNG-------KYLGLNPDCFFVGCDISPSLIKICVDRGH--------E 164
+ G V+DA CGNG +G + G DI I +
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVG--ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVT 77
Query: 165 VLVADAVNLPYRSDFGDAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLI 217
++ N+ D A+ + + S + +A+ + + ++ G ++ +
Sbjct: 78 LIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137
Query: 218 TV 219
+
Sbjct: 138 VI 139
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-05
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 118 NSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGH-------EVLV 167
L S+V+DA GNG +L D+ + R E+++
Sbjct: 18 EVLDDESIVVDATMGNGNDTAFL-AGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL 76
Query: 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRK--------KAIEELVRVVKKGSLVLITV 219
NL + A I L +L + + +AIE+++ ++ G + I +
Sbjct: 77 DGHENLDHYVREPIRAA-IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135
Query: 220 W 220
+
Sbjct: 136 Y 136
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 39/298 (13%), Positives = 78/298 (26%), Gaps = 69/298 (23%)
Query: 78 SSIKSTPELEKKYVHRVYDAIAPHFSSTRFA------KWPKVATFLNSLPSGSLVLDAGC 131
SS++S KYV + H + + K P + + S +L G
Sbjct: 3 SSMRSLFSDHGKYVES-FRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGG 61
Query: 132 GNG--------KYLGLNPDCF--FVGCDISPSLI----------------KICVDRGHEV 165
G G K P + S I K +
Sbjct: 62 GAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS 121
Query: 166 LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225
+ D I +L+++ ++ ++ + +LI V +
Sbjct: 122 EYQSRMLEKKELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVVSGSS- 177
Query: 226 DKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA--RTLES---------------IPETED 268
W L +KY + + + + L++ I +
Sbjct: 178 ------GWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFI 231
Query: 269 NGSEE---------QGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFV 317
+G+E + + P L + Q + S + + N + V
Sbjct: 232 DGNENGDLLWDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIV 289
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 7e-05
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 106 RFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLI----KI 157
R+ + K L G + G G L +I P + K+
Sbjct: 106 RYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV 165
Query: 158 CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL 214
G V+ D + +F D + A +++ + R V +
Sbjct: 166 IEGLGVDGVNVITGDETVIDGL-EF-DVLMVAA------LAEPKRRVFRNIHRYVDTETR 217
Query: 215 VLI 217
++
Sbjct: 218 IIY 220
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 9e-05
Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 26/157 (16%)
Query: 113 VATFLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDRGH----- 163
+ VLD GCG G K+ + V DI+ +K C R
Sbjct: 25 LEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN-KLVCTDIADVSVKQCQQRYEDMKNR 83
Query: 164 ---------EVLVADAVNLPYRSDFG------DAAISIAVLHH-LSTESRRKKAIEELVR 207
E + AD+ F D V H+ + + +
Sbjct: 84 RDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACE 143
Query: 208 VVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
+ G + T + + L T +
Sbjct: 144 RLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 12/139 (8%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF- 145
+++ A +F + V F G+ +L+ G G + + F
Sbjct: 9 DQEIKDTAGHKYAYNFDFDVMHPF-MVRAFTPFFRPGN-LLELGSFKGDFTSRLQEHFND 66
Query: 146 -VGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
+ S I R G + + + + D + VL H+
Sbjct: 67 ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRY-DNIVLTHVLEHI---DDPVAL 122
Query: 202 IEELV-RVVKKGSLVLITV 219
++ + + +G + +
Sbjct: 123 LKRINDDWLAEGGRLFLVC 141
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 15/121 (12%)
Query: 118 NSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDR--------GHEVL 166
+SLP G L GCG G + +P+ F VG DIS S + + +
Sbjct: 63 SSLPLGR-ALVPGCGGGHDVVAM-ASPERFVVGLDISESALAKANETYGSSPKAEYFSFV 120
Query: 167 VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226
D F D + R + + ++K ++ ++ +
Sbjct: 121 KEDVFTWRPTELF-DLIFDYVFFCAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHV 178
Query: 227 K 227
Sbjct: 179 G 179
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Length = 253 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 2e-04
Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 84 PELEKKYVHRVYDAIAPHFSST-RFAKWPKVATFLNSLPSGSLVLDAGCG-NGKYLGLNP 141
L V + A++ H S+ R A+ + F+ S + VLD CG N L
Sbjct: 69 AALSAGDVKK---ALSLHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYERG 125
Query: 142 DCFFVGCDISPSLIKIC------VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
GCDI L + D + D + P ++ GD A+ +L L E
Sbjct: 126 IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP-PAEAGDLALIFKLLPLLERE 184
Query: 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
+ A+ L + V ++ K + + + +
Sbjct: 185 -QAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAE 232
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 2e-04
Identities = 22/167 (13%), Positives = 45/167 (26%), Gaps = 15/167 (8%)
Query: 91 VHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGK------YLGLNPDC 143
V V+ + + + + S V D GC G P+
Sbjct: 26 VAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNV 85
Query: 144 FFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
+G D S +++ C V + I L L E
Sbjct: 86 KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPE-D 144
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
R + ++ + +++++ ED + L ++
Sbjct: 145 RIALLTKIYEGLNPNGVLVLSEK-FRFEDTKINHLLIDLHHQFKRAN 190
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 3e-04
Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 32/154 (20%)
Query: 121 PSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDR--------------- 161
+ VL GNG KY V D I +R
Sbjct: 47 SNKRKVLAIDFGNGADLEKYFYGEIA-LLVATDPDADAIARGNERYNKLNSGIKTKYYKF 105
Query: 162 --GHEVLVADAVNLPYRSDFG----DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215
E + +D R F + +H+ + L + G V
Sbjct: 106 DYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKV 165
Query: 216 LIT------VWAVEQEDKSLVTKWTPLTQKYVEE 243
LIT + + + ++ K P ++ Y+
Sbjct: 166 LITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSV 199
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 25/133 (18%), Positives = 36/133 (27%), Gaps = 31/133 (23%)
Query: 92 HRVYDAIAPHFSSTRFAKWPKV------ATFLNSLPSGSLVLDAGCGNGKYL----GLNP 141
+ + P F + + D GCG G L L P
Sbjct: 13 EMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQV---EFADIGCGYGGLLVELSPLFP 69
Query: 142 DCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
D +G +I + DR + A A +IA L A
Sbjct: 70 DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ----------NIACLRS--------NA 111
Query: 202 IEELVRVVKKGSL 214
++ L KG L
Sbjct: 112 MKHLPNFFYKGQL 124
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 164
KW + F N P + ++ G G G ++ NPD ++G DI S++ +D+ E
Sbjct: 33 KWRDL--FGNDNP---IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE 87
Query: 165 -------VLVADAVNLPYRSDFGDAAIS 185
+L D +L F D I
Sbjct: 88 VGVPNIKLLWVDGSDLTDY--FEDGEID 113
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 8e-04
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 164
KW V F N P + ++ G G G+++ NPD ++G ++ S+I V + +
Sbjct: 30 KWNTV--FGNDNP---IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD 84
Query: 165 -------VLVADAVNLPYRSDFGDAAIS 185
+L DA L F +
Sbjct: 85 SEAQNVKLLNIDADTLTDV--FEPGEVK 110
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.86 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.84 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.84 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.84 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.83 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.83 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.83 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.83 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.83 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.82 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.81 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.81 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.8 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.8 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.8 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.79 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.79 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.79 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.78 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.78 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.78 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.78 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.78 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.78 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.77 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.77 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.77 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.77 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.76 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.76 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.76 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.76 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.75 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.75 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.75 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.75 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.75 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.74 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.74 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.73 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.73 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.73 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.72 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.72 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.72 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.72 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.72 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.72 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.72 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.71 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.71 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.71 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.71 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.7 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.69 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.68 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.67 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.67 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.67 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.67 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.66 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.66 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.66 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.66 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.66 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.65 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.65 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.63 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.63 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.62 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.62 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.61 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.61 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.6 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.6 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.6 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.6 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.58 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.58 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.58 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.58 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.57 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.57 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.57 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.56 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.56 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.56 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.55 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.55 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.54 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.54 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.53 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.53 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.52 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.52 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.52 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.51 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.5 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.48 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.48 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.48 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.48 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.48 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.47 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.47 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.46 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.46 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.46 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.46 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.45 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.45 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.45 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.44 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.44 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.44 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.44 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.43 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.43 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.43 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.42 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.41 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.41 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.41 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.41 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.4 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.4 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.4 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.39 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.39 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.38 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.38 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.38 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.38 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.38 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.38 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.38 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.38 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.37 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.37 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.37 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.36 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.36 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.35 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.35 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.34 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.34 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.34 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.33 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.33 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.33 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.32 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.32 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.32 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.32 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.32 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.31 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.31 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.31 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.31 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.3 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.3 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.3 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.29 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.29 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.29 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.29 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.28 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.28 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.28 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.27 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.27 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.26 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.26 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.26 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.26 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.26 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.25 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.25 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.25 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.25 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.25 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.25 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.24 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.24 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.24 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.23 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.23 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.23 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.22 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.21 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.21 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.21 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.2 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.2 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.19 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.18 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.18 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.17 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.15 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.15 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.14 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.12 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.12 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.11 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.11 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.11 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.1 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.1 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.09 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.08 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.07 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.06 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.06 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.05 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.05 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.04 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.04 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.04 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.03 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.03 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.03 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.02 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.02 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.01 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.01 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.0 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.99 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.98 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.98 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.97 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.97 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.96 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.96 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.92 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.91 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.84 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.83 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.81 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.78 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.73 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.69 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.68 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.66 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.66 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.64 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.64 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.61 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.6 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.6 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.58 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.57 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.51 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.49 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.45 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.4 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.38 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.37 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.36 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.31 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.28 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.28 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.27 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.24 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.24 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.22 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.22 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.21 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.19 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.18 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.06 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.04 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.01 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.98 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.98 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.98 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.91 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.89 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.83 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.77 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.74 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.71 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.56 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.53 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.28 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.25 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.2 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.11 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.02 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.98 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.48 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.66 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.58 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 95.57 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.33 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 94.87 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.57 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.48 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.01 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.81 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.76 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.51 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.42 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 93.12 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.04 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.98 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.96 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.88 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.81 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.56 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.36 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.34 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.94 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 91.68 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.31 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.03 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 91.0 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 90.96 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.95 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 90.74 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.73 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.71 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.69 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.66 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 90.64 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 90.47 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 90.29 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 90.27 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.15 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 90.03 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 89.98 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.97 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 89.86 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 89.77 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 89.62 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 89.61 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 89.32 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 89.08 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 88.9 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 88.76 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.67 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.46 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 88.43 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 88.31 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 88.28 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 88.2 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 87.74 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 87.6 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 86.88 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 86.85 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.44 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 86.16 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 86.12 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 85.12 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 84.84 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 84.69 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 83.59 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 83.47 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.42 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 83.37 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 83.37 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 82.67 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 82.54 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 82.47 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 82.22 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 82.18 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 82.14 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 81.84 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 81.76 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 81.75 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 80.87 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 80.71 |
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-23 Score=193.26 Aligned_cols=229 Identities=19% Similarity=0.191 Sum_probs=144.5
Q ss_pred HHHhhCcccccccccchH---HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-CCeEEE
Q 017080 94 VYDAIAPHFSSTRFAKWP---KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEVLV 167 (377)
Q Consensus 94 ~y~~~a~~y~~~~~~~~~---~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-~~~~~~ 167 (377)
.|+.++..|+..+..... .+...+ .+.++.+|||||||+|.++.. .++.+|+|+|+|+.|++.++++ ++++++
T Consensus 4 ~y~~~a~~y~~~~~~~~~~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~ 82 (261)
T 3ege_A 4 IYNSIGKQYSQTRVPDIRIVNAIINLL-NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFT 82 (261)
T ss_dssp ---------CCSBCCCHHHHHHHHHHH-CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEEC
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHh-CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEE
Confidence 577788888765543322 222222 346788999999999998643 5788999999999999988776 789999
Q ss_pred eeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCC
Q 017080 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGP 247 (377)
Q Consensus 168 ~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 247 (377)
+|++++++++++||+|++..+++|+++ +..++++++++|| ||++++.++........+.. .........+
T Consensus 83 ~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--- 152 (261)
T 3ege_A 83 GYAENLALPDKSVDGVISILAIHHFSH---LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLY---DYFPFLWEDA--- 152 (261)
T ss_dssp CCTTSCCSCTTCBSEEEEESCGGGCSS---HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGG---GTCHHHHHHH---
T ss_pred CchhhCCCCCCCEeEEEEcchHhhccC---HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHH---HHHHHHhhhh---
Confidence 999999998999999999999999998 8999999999999 99999998764322211111 1111111111
Q ss_pred CCCCcCCCCCCCcccHHhHhhcCCCcc-ccCCcccCCcchhhhhcccccCCCcchhccccccccCccceeEeeeeccccc
Q 017080 248 GSPRVRSPSARTLESIPETEDNGSEEQ-GKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRA 326 (377)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~aGF~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (377)
...+.+.+.+. +|+++||++ ......++.+.|..-. ....+..+... .........
T Consensus 153 ------~~~~~~~~~~~-~l~~aGF~~v~~~~~~~p~~~~~~~~-----------~~~~~~~~~~~-----~~~~~~~~~ 209 (261)
T 3ege_A 153 ------LRFLPLDEQIN-LLQENTKRRVEAIPFLLPHDLSDLFA-----------AAAWRRPELYL-----KAEVRAGIS 209 (261)
T ss_dssp ------HTSCCHHHHHH-HHHHHHCSEEEEEECCEETTCSBCCT-----------TTTTTCGGGGG-----SHHHHHTSH
T ss_pred ------hhhCCCHHHHH-HHHHcCCCceeEEEecCCCcCcchhh-----------HHhccCchhhc-----Ccchhcccc
Confidence 13345667788 999999977 4455556666554100 11111111100 000000011
Q ss_pred cccCcchhhhhccccccCCCCCceeEEeee
Q 017080 327 EVSGASACALANGLAKKDDKKGAVVYNRYY 356 (377)
Q Consensus 327 ~~~g~s~~~~~~~l~~~~~~~~~~~~~ry~ 356 (377)
.....+.++++..+++.++++.+..+|.|+
T Consensus 210 ~~~~~~~~e~~~~~~~~~~~l~~~~~h~~~ 239 (261)
T 3ege_A 210 SFALANQDLVEKGLELLTADLNNGEWIRKY 239 (261)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ceeecCHHHHHHHHHHHHHHHhcCCchhhh
Confidence 122246777888888877777777777765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-22 Score=184.39 Aligned_cols=227 Identities=14% Similarity=0.071 Sum_probs=151.9
Q ss_pred HhCCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
+..+.++.+|||||||+|.++. ..| +.+|+|+|+|+.+++.++++ +++++++|+.++++ +++||+|++
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~ 95 (284)
T 3gu3_A 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAIC 95 (284)
T ss_dssp TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEE
T ss_pred HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEE
Confidence 3456778999999999999753 345 58999999999999999886 57899999999887 569999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC-----Ccc-chhhhhccccchHHHHhhhhCCCCCCcCCCCCCC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV-----EQE-DKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSART 259 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~-----~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 259 (377)
..+++|+++ +..++++++++|||||++++.++.. ... +......... ...+...+... ..........
T Consensus 96 ~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ 169 (284)
T 3gu3_A 96 HAFLLHMTT---PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQ-LGVLQKLFESD--TQRNGKDGNI 169 (284)
T ss_dssp ESCGGGCSS---HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCC-HHHHHHHHHHH--HHHTCCCTTG
T ss_pred CChhhcCCC---HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccc-hHHHHHHHHHH--hhhhcccccH
Confidence 999999999 8899999999999999999998761 100 0000000000 00111101000 0011234556
Q ss_pred cccHHhHhhcCCCcc-cc----CCcccCCcchhhhhcccccCCCcchhccccccccCccceeE-eeeeccccccccCcch
Q 017080 260 LESIPETEDNGSEEQ-GK----EPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFV-PWHLPYHRAEVSGASA 333 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~ 333 (377)
.+++.++|+++||++ .. ....++.+.|+... ..+...+++.+-.....-+ .+. ......||+.
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~d~--------~~l~~~l~~~G~~~~~~~~~~~~---~~l~~~g~~~ 238 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVSDKVNFLDSNMHHNDK--------NDLYQSLKEEGIAGDPGDKQQFV---ERLIARGLTY 238 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEECCCCEEECTTCCSHHH--------HHHHHHHHHTTTTCCCCCHHHHH---HHHHTTTCCH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCCccccCCCCChHHH--------HHHHHHHHhccccCCcccHHHHH---HHHHHccccH
Confidence 678999999999988 33 56677777776621 0011133333322211000 111 1112348999
Q ss_pred hhhhccccccCCCCCceeEEeeeecccc
Q 017080 334 CALANGLAKKDDKKGAVVYNRYYHVFCD 361 (377)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~ry~~~~~~ 361 (377)
++++..+++.+++.++...|.||.++..
T Consensus 239 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (284)
T 3gu3_A 239 DNALAQYEAELRFFKALHLHSSLVYAPN 266 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhcCc
Confidence 9999999999999999999998887653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-21 Score=172.53 Aligned_cols=178 Identities=9% Similarity=0.076 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhCcccccc--cccchHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--
Q 017080 88 KKYVHRVYDAIAPHFSST--RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-- 161 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~--~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-- 161 (377)
+.+..++|+..+..|+.. ....+..+...+....++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~ 85 (250)
T 2p7i_A 6 RNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK 85 (250)
T ss_dssp -----------------CHHHHTHHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC
T ss_pred CCCCHHHHhhHHHHhcCccchhhHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhh
Confidence 334455666666665431 1123344556666556778999999999997642 3455899999999999999987
Q ss_pred -CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHH-HccccCcEEEEEEcCCCccchhhhhccccchHH
Q 017080 162 -GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV-RVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK 239 (377)
Q Consensus 162 -~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 239 (377)
+++++++|+.++ +++++||+|++..+++|+++ +..+|+++. ++|||||++++.+++.......... + ..
T Consensus 86 ~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-~----~~ 156 (250)
T 2p7i_A 86 DGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD---PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAV-K----MG 156 (250)
T ss_dssp SCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS---HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHH-H----TT
T ss_pred CCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC---HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHH-H----cC
Confidence 688999999887 46889999999999999999 889999999 9999999999998765432111100 0 00
Q ss_pred HHhhhhCCC--CCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 240 YVEEWIGPG--SPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 240 ~~~~w~~~~--~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+...+.... .....+...++.+++.++++++||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 157 IISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp SSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred ccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence 000000000 00122345788999999999999977
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-21 Score=170.14 Aligned_cols=184 Identities=15% Similarity=0.016 Sum_probs=130.0
Q ss_pred hHHHHHHHHHhhCccccccc----ccchHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHH
Q 017080 87 EKKYVHRVYDAIAPHFSSTR----FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~----~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~ 160 (377)
..+...++|+..+..|+... ......+...+..++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.+++
T Consensus 7 ~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~ 86 (218)
T 3ou2_A 7 LIESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR 86 (218)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHTTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh
Confidence 34556778888888887521 223456677777788888999999999997642 236799999999999999987
Q ss_pred c---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccch
Q 017080 161 R---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLT 237 (377)
Q Consensus 161 ~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (377)
. +++++.+|+.++ +++++||+|++..+++|+++++ ...+|+++.++|||||.+++.+++....... ..+....
T Consensus 87 ~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~ 162 (218)
T 3ou2_A 87 HGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDR-FEAFWESVRSAVAPGGVVEFVDVTDHERRLE--QQDDSEP 162 (218)
T ss_dssp GCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECCCC-------------
T ss_pred cCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHH-HHHHHHHHHHHcCCCeEEEEEeCCCCccccc--hhhhccc
Confidence 6 488999999988 7789999999999999999843 5899999999999999999998775321100 0000000
Q ss_pred HHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 238 QKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 238 ~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
......+............+++.+++.++++++||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 199 (218)
T 3ou2_A 163 EVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 (218)
T ss_dssp -CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred ccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence 0000111110000001244678899999999999965
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-21 Score=174.88 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=97.5
Q ss_pred HHHHHhhCcccccccccchHHHHHHHhC-CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-CCeEEE
Q 017080 92 HRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEVLV 167 (377)
Q Consensus 92 ~~~y~~~a~~y~~~~~~~~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-~~~~~~ 167 (377)
++.|+..+..|+..|...-..+.+.+.. .+.+.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++.+++
T Consensus 8 ~d~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~ 87 (257)
T 4hg2_A 8 KDHFTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAV 87 (257)
T ss_dssp ------------CCCCCCCHHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeeh
Confidence 5567888888887765555566665543 34567999999999998653 4567999999999999998776 799999
Q ss_pred eeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 168 ~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+|++++++++++||+|++..++||+ + +.+++++++|+|||||.|++..+...
T Consensus 88 ~~~e~~~~~~~sfD~v~~~~~~h~~-~---~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 88 APAEDTGLPPASVDVAIAAQAMHWF-D---LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CCTTCCCCCSSCEEEEEECSCCTTC-C---HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred hhhhhhcccCCcccEEEEeeehhHh-h---HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 9999999999999999999999887 4 67899999999999999999887644
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-21 Score=168.61 Aligned_cols=162 Identities=22% Similarity=0.230 Sum_probs=129.5
Q ss_pred HHHHHHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-CCeE
Q 017080 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEV 165 (377)
Q Consensus 89 ~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-~~~~ 165 (377)
+...++|+..+..|+..... .+.+..++..++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++.+
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 89 (211)
T 3e23_A 11 DDTLRFYRGNATAYAERQPR-SATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPV 89 (211)
T ss_dssp HHHHHHHHHSHHHHTTCCCC-CHHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhhccch-hHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCce
Confidence 44567788777777764433 556677777888899999999999997643 3367999999999999999998 8999
Q ss_pred EEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhh
Q 017080 166 LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245 (377)
Q Consensus 166 ~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 245 (377)
..+|+..++ ++++||+|++..+++|++.++ +..+|+++.++|||||.+++..+........
T Consensus 90 ~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----------------- 150 (211)
T 3e23_A 90 RTMLFHQLD-AIDAYDAVWAHACLLHVPRDE-LADVLKLIWRALKPGGLFYASYKSGEGEGRD----------------- 150 (211)
T ss_dssp EECCGGGCC-CCSCEEEEEECSCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECCSSCEEC-----------------
T ss_pred EEeeeccCC-CCCcEEEEEecCchhhcCHHH-HHHHHHHHHHhcCCCcEEEEEEcCCCccccc-----------------
Confidence 999999988 789999999999999998433 8899999999999999999997654322110
Q ss_pred CCCCCCcCCCCCCCcccHHhHhhcCC-Ccc
Q 017080 246 GPGSPRVRSPSARTLESIPETEDNGS-EEQ 274 (377)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~l~~aG-F~~ 274 (377)
........++.+++.++++++| |++
T Consensus 151 ----~~~~~~~~~~~~~~~~~l~~aG~f~~ 176 (211)
T 3e23_A 151 ----KLARYYNYPSEEWLRARYAEAGTWAS 176 (211)
T ss_dssp ----TTSCEECCCCHHHHHHHHHHHCCCSE
T ss_pred ----ccchhccCCCHHHHHHHHHhCCCcEE
Confidence 0111235678899999999999 966
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=169.46 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=116.4
Q ss_pred HHHHHHHhhCcccccccccch-----HHHHHHH-hCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc
Q 017080 90 YVHRVYDAIAPHFSSTRFAKW-----PKVATFL-NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~~~~~-----~~~~~~l-~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
...++|+..+..|+......| ..+...+ ..++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 94 (242)
T 3l8d_A 15 SAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKER 94 (242)
T ss_dssp -----------------CHHHHTSTTTTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTT
T ss_pred HHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence 445666666666654322211 1233333 3467889999999999997642 3377999999999999999987
Q ss_pred ----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccch
Q 017080 162 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLT 237 (377)
Q Consensus 162 ----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (377)
++.++++|+.++++++++||+|++..+++|+++ +..+++++.++|||||.+++.++........ .
T Consensus 95 ~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~--~------ 163 (242)
T 3l8d_A 95 GEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE---PLRALNEIKRVLKSDGYACIAILGPTAKPRE--N------ 163 (242)
T ss_dssp TCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC---HHHHHHHHHHHEEEEEEEEEEEECTTCGGGG--G------
T ss_pred cccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC---HHHHHHHHHHHhCCCeEEEEEEcCCcchhhh--h------
Confidence 688999999999988999999999999999998 8899999999999999999998764432111 0
Q ss_pred HHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCccccC
Q 017080 238 QKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKE 277 (377)
Q Consensus 238 ~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~~~~ 277 (377)
.+.. ++. ...+...++.+++.++++++||++.+.
T Consensus 164 -~~~~-~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 164 -SYPR-LYG----KDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp -GGGG-GGT----CCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred -hhhh-hcc----ccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 1111 111 122355678889999999999988433
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=172.27 Aligned_cols=151 Identities=14% Similarity=0.207 Sum_probs=107.0
Q ss_pred CCCCCEEEEECCccCccc----cc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 120 LPSGSLVLDAGCGNGKYL----GL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~----~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
++++.+|||||||+|.++ +. .++++|+|+|+|+.|++.|+++ +++++++|+.++|+ ++||+|++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~ 145 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL 145 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--ccccccee
Confidence 678999999999999864 22 4788999999999999999886 57899999999875 46999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHH-hhhhCCCCC------CcCCCCCC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYV-EEWIGPGSP------RVRSPSAR 258 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~------~~~~~~~~ 258 (377)
..+++|+++.+ +..+|++++++|||||.+++.+......... ...+...+..+. ..++..... .......+
T Consensus 146 ~~~l~~~~~~~-~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 146 NFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEKFSFEDAKV-GELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp ESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEBCCSSHHH-HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeeeecCchh-HhHHHHHHHHHcCCCcEEEEEeccCCCCHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999998755 6789999999999999999998654322111 000000000000 000000000 00113356
Q ss_pred CcccHHhHhhcCCCcc
Q 017080 259 TLESIPETEDNGSEEQ 274 (377)
Q Consensus 259 ~~~~l~~~l~~aGF~~ 274 (377)
+.+++.++|+++||+.
T Consensus 224 s~~~~~~~L~~AGF~~ 239 (261)
T 4gek_A 224 SVETHKARLHKAGFEH 239 (261)
T ss_dssp CHHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHHcCCCe
Confidence 7888999999999954
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-21 Score=169.10 Aligned_cols=163 Identities=12% Similarity=0.123 Sum_probs=124.7
Q ss_pred HHHHHHHhhCccccccc------ccchHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc
Q 017080 90 YVHRVYDAIAPHFSSTR------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~------~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+.++|+..+..|+... ...+..+...+... .+.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++
T Consensus 4 ~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~ 82 (203)
T 3h2b_A 4 DVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATG-VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT 82 (203)
T ss_dssp HHHHHHHCTTTCHHHHTCSSCCTTCTTHHHHHHHHHH-CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhhhhccccHHHHHHHHHHhcc-CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh
Confidence 46778888888886421 12234333333322 278999999999997642 3367999999999999999987
Q ss_pred --CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHH
Q 017080 162 --GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK 239 (377)
Q Consensus 162 --~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 239 (377)
++.++++|+.++++++++||+|++..+++|++.++ +..+|+++.++|||||.+++.++...... .
T Consensus 83 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-----~------- 149 (203)
T 3h2b_A 83 HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE-LPDALVALRMAVEDGGGLLMSFFSGPSLE-----P------- 149 (203)
T ss_dssp CTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT-HHHHHHHHHHTEEEEEEEEEEEECCSSCE-----E-------
T ss_pred CCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH-HHHHHHHHHHHcCCCcEEEEEEccCCchh-----h-------
Confidence 79999999999988899999999999999998333 89999999999999999999987654310 0
Q ss_pred HHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 240 YVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 240 ~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+ .........++.+++.++++++||++
T Consensus 150 ----~----~~~~~~~~~~~~~~~~~~l~~~Gf~~ 176 (203)
T 3h2b_A 150 ----M----YHPVATAYRWPLPELAQALETAGFQV 176 (203)
T ss_dssp ----E----CCSSSCEEECCHHHHHHHHHHTTEEE
T ss_pred ----h----hchhhhhccCCHHHHHHHHHHCCCcE
Confidence 0 01112234578899999999999977
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-20 Score=168.08 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=115.0
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCcee
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD 181 (377)
..+...+....++.+|||||||+|.++. ..|+.+++|+|+|+.+++.++++ ++.++++|+.+++++ ++||
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD 111 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYD 111 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCce
Confidence 3444444445678899999999999753 36789999999999999999987 688999999998876 8999
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhh---hhccc------cchHHHHhhhhCCCCCCc
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL---VTKWT------PLTQKYVEEWIGPGSPRV 252 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~~------~~~~~~~~~w~~~~~~~~ 252 (377)
+|++..+++|+++.+ ...++++++++|||||.+++.++......... ...|. .........+ ....
T Consensus 112 ~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 186 (234)
T 3dtn_A 112 MVVSALSIHHLEDED-KKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAG----YERS 186 (234)
T ss_dssp EEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTT----C---
T ss_pred EEEEeCccccCCHHH-HHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHH----HHhc
Confidence 999999999998743 45799999999999999999987654321110 00010 0001111111 1122
Q ss_pred CCCCCCCcccHHhHhhcCCCcc
Q 017080 253 RSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 253 ~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.....++.+++.++|+++||++
T Consensus 187 ~~~~~~~~~~~~~ll~~aGF~~ 208 (234)
T 3dtn_A 187 KLDKDIEMNQQLNWLKEAGFRD 208 (234)
T ss_dssp -CCCCCBHHHHHHHHHHTTCEE
T ss_pred ccccccCHHHHHHHHHHcCCCc
Confidence 4456778899999999999966
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=168.71 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=111.9
Q ss_pred HHHHHhhCccccccc----------ccchHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHH
Q 017080 92 HRVYDAIAPHFSSTR----------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICV 159 (377)
Q Consensus 92 ~~~y~~~a~~y~~~~----------~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~ 159 (377)
.++|+.++..|+... ...+..+...+.. .++.+|||||||+|.++.. ..+.+++|+|+|+.+++.++
T Consensus 6 ~~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 84 (220)
T 3hnr_A 6 NGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVN-KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAK 84 (220)
T ss_dssp ------------------CCTTTTTTTTHHHHHHHHHH-TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHhhc-cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence 345666666666421 1223344444432 3678999999999997642 33779999999999999999
Q ss_pred Hc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccc
Q 017080 160 DR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPL 236 (377)
Q Consensus 160 ~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (377)
++ +++++.+|+.+++++ ++||+|++..+++|+++.+ ...+|+++.++|||||.+++.++......... . .
T Consensus 85 ~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~----~ 157 (220)
T 3hnr_A 85 EKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDE-KNVAIAKYSQLLNKGGKIVFADTIFADQDAYD-K----T 157 (220)
T ss_dssp HHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHH-HHHHHHHHHHHSCTTCEEEEEEECBSSHHHHH-H----H
T ss_pred HhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCChHH-HHHHHHHHHHhcCCCCEEEEEeccccChHHHH-H----H
Confidence 87 789999999999887 9999999999999999833 34499999999999999999986644321110 0 0
Q ss_pred hHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 237 TQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 237 ~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
...+....+...........+++.+++.++++++||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 195 (220)
T 3hnr_A 158 VEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHV 195 (220)
T ss_dssp HHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEE
T ss_pred HHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEE
Confidence 00000000000000001123457889999999999965
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=171.30 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=113.9
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC--CCCCCceeEEEecc
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL--PYRSDFGDAAISIA 187 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~--~~~~~~fD~V~~~~ 187 (377)
.+..++..++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++.+|+.++ ++++++||+|++..
T Consensus 31 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~~~~fD~i~~~~ 109 (240)
T 3dli_A 31 RLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLPDKYLDGVMISH 109 (240)
T ss_dssp HHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred HHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-cceeeccHHHHhhhcCCCCeeEEEECC
Confidence 3444455567889999999999998642 2367899999999999999988 99999998875 78889999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+++++ ...+++++.++|||||++++.+++..... .....|. ...+...++.+++.+++
T Consensus 110 ~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------------~~~~~~~-----~~~~~~~~~~~~l~~~l 171 (240)
T 3dli_A 110 FVEHLDPER-LFELLSLCYSKMKYSSYIVIESPNPTSLY------------SLINFYI-----DPTHKKPVHPETLKFIL 171 (240)
T ss_dssp CGGGSCGGG-HHHHHHHHHHHBCTTCCEEEEEECTTSHH------------HHHHHTT-----STTCCSCCCHHHHHHHH
T ss_pred chhhCCcHH-HHHHHHHHHHHcCCCcEEEEEeCCcchhH------------HHHHHhc-----CccccccCCHHHHHHHH
Confidence 999999633 68999999999999999999987643211 1111121 12345667889999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 172 ~~aGf~~ 178 (240)
T 3dli_A 172 EYLGFRD 178 (240)
T ss_dssp HHHTCEE
T ss_pred HHCCCeE
Confidence 9999976
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-20 Score=171.42 Aligned_cols=157 Identities=14% Similarity=0.115 Sum_probs=113.0
Q ss_pred HHHHHhCC-CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC-CCCCce
Q 017080 113 VATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRSDFG 180 (377)
Q Consensus 113 ~~~~l~~~-~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~~f 180 (377)
+..++..+ .++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++++|+.+++ +.+++|
T Consensus 58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 137 (285)
T 4htf_A 58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV 137 (285)
T ss_dssp HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence 44444433 3467999999999997642 2378999999999999999875 4779999999987 778999
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 260 (377)
|+|++..+++|+++ +..+|+++.++|||||.+++.+++........ ......................+..+++.
T Consensus 138 D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (285)
T 4htf_A 138 DLILFHAVLEWVAD---PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHN--MVAGNFDYVQAGMPKKKKRTLSPDYPRDP 212 (285)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHH--HHTTCHHHHHTTCCCC----CCCSCCBCH
T ss_pred eEEEECchhhcccC---HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHH--HHhcCHHHHhhhccccccccCCCCCCCCH
Confidence 99999999999999 88999999999999999999987643211110 00000011111111111112233567888
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
+++.++++++||++
T Consensus 213 ~~l~~~l~~aGf~v 226 (285)
T 4htf_A 213 TQVYLWLEEAGWQI 226 (285)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHCCCce
Confidence 99999999999987
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=161.07 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=111.4
Q ss_pred HHhCCCCCCEEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.+..+.++.+|||||||+|.++...... +|+|+|+.+++.++++++.+..+|+.++++++++||+|++..+++|+++
T Consensus 41 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~- 117 (219)
T 1vlm_A 41 AVKCLLPEGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDD- 117 (219)
T ss_dssp HHHHHCCSSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC-
T ss_pred HHHHhCCCCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccC-
Confidence 3433344889999999999986532222 9999999999999998999999999999888899999999999999998
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCccc
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQG 275 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~~ 275 (377)
+..+|+++.++|+|||.+++.++......... .... ............++.+++.++|+++||++.
T Consensus 118 --~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 118 --PERALKEAYRILKKGGYLIVGIVDRESFLGRE-----------YEKN-KEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHH-----------HHHT-TTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred --HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHH-----------HHHH-hcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 88999999999999999999987653221111 1101 111122234567889999999999999773
Q ss_pred c
Q 017080 276 K 276 (377)
Q Consensus 276 ~ 276 (377)
+
T Consensus 184 ~ 184 (219)
T 1vlm_A 184 K 184 (219)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=158.47 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=108.0
Q ss_pred CCCCEEEEECCccCcccccCCCc-eEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 121 PSGSLVLDAGCGNGKYLGLNPDC-FFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~~~~~-~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
.++.+|||||||+|.++... +. +++|+|+|+.+++.++++ ++.++++|+.++++++++||+|++..+++|+++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--- 110 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED--- 110 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC---
T ss_pred CCCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC---
Confidence 47889999999999987655 66 999999999999999987 799999999999988999999999999999998
Q ss_pred HHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+..+++++.++|||||.+++.+++........ .... . ........+..+++.+++.++++ |
T Consensus 111 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-------~~~~---~-~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 111 VERVLLEARRVLRPGGALVVGVLEALSPWAAL-------YRRL---G-EKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECTTSHHHHH-------HHHH---H-HTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred HHHHHHHHHHHcCCCCEEEEEecCCcCcHHHH-------HHHH---h-hccCccccccccCCHHHHHHHhc--C
Confidence 88999999999999999999988754321111 0000 0 11122233466789999999998 7
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-20 Score=163.46 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=108.0
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+++ +|||||||+|.++.. .++.+|+|+|+|+.+++.++++ +++++++|+.++++++++||+|++..+
T Consensus 42 ~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 42 ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS 120 (219)
T ss_dssp CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch
Confidence 4445 999999999997532 3678999999999999999887 578999999999998999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhh
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETED 268 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~ 268 (377)
++|+++ +..+++++.++|||||.+++.+............. ........|... .......++.+++.++|+
T Consensus 121 l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~ 191 (219)
T 3dlc_A 121 VFFWED---VATAFREIYRILKSGGKTYIGGGFGNKELRDSISA---EMIRKNPDWKEF---NRKNISQENVERFQNVLD 191 (219)
T ss_dssp GGGCSC---HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHH---HHHHHCTTHHHH---HHHHSSHHHHHHHHHHHH
T ss_pred HhhccC---HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHH---HHHHhHHHHHhh---hhhccccCCHHHHHHHHH
Confidence 999988 88999999999999999999876544322111100 000001111110 001133457789999999
Q ss_pred cCCCcc
Q 017080 269 NGSEEQ 274 (377)
Q Consensus 269 ~aGF~~ 274 (377)
++||++
T Consensus 192 ~aGf~~ 197 (219)
T 3dlc_A 192 EIGISS 197 (219)
T ss_dssp HHTCSS
T ss_pred HcCCCe
Confidence 999955
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=165.72 Aligned_cols=139 Identities=17% Similarity=0.086 Sum_probs=109.7
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++++|+.++|+++++||+|++..
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 567889999999999997642 2257999999999999998875 47899999999999999999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+++ +..+|++++++|||||.+++.++........ .....+...+.. ....+.+++.+++
T Consensus 159 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~~~~~~~--------~~~~~~~~~~~~l 221 (297)
T 2o57_A 159 AFLHSPD---KLKVFQECARVLKPRGVMAITDPMKEDGIDK------SSIQPILDRIKL--------HDMGSLGLYRSLA 221 (297)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCG------GGGHHHHHHHTC--------SSCCCHHHHHHHH
T ss_pred hhhhcCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCch------HHHHHHHHHhcC--------CCCCCHHHHHHHH
Confidence 9999999 8999999999999999999998764322110 011122222211 2345778999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 222 ~~aGf~~ 228 (297)
T 2o57_A 222 KECGLVT 228 (297)
T ss_dssp HHTTEEE
T ss_pred HHCCCeE
Confidence 9999976
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=165.27 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=112.1
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCce
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~f 180 (377)
...+...+. +.++.+|||||||+|.++.. ....+|+|+|+|+.|++.++++ ++.+.++|++++|+++++|
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 344555543 45788999999999997532 2235999999999999998875 4789999999999999999
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 260 (377)
|+|++..+++|+++ +..+|++++++|||||++++.++..... .....+. .....+.. ......++.
T Consensus 105 D~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~~~~~~~~~~--~~~~~~~----~~~~~~~~-----~~~~~~~~~ 170 (260)
T 1vl5_A 105 HIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVDNSAPEN--DAFDVFY----NYVEKERD-----YSHHRAWKK 170 (260)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEBCSS--HHHHHHH----HHHHHHHC-----TTCCCCCBH
T ss_pred EEEEEhhhhHhcCC---HHHHHHHHHHHcCCCCEEEEEEcCCCCC--HHHHHHH----HHHHHhcC-----ccccCCCCH
Confidence 99999999999999 8899999999999999999987654322 1111111 11111111 122456788
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
+++.++|+++||.+
T Consensus 171 ~~~~~~l~~aGf~~ 184 (260)
T 1vl5_A 171 SDWLKMLEEAGFEL 184 (260)
T ss_dssp HHHHHHHHHHTCEE
T ss_pred HHHHHHHHHCCCeE
Confidence 89999999999987
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-19 Score=161.31 Aligned_cols=145 Identities=16% Similarity=0.168 Sum_probs=110.1
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+.++.+|||||||+|.++. ..|+.+|+|+|+|+.|++.++++ ++.+.++|+.+++ ++++||+|++..+++|++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 109 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVP 109 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGST
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCC
Confidence 3567899999999999753 25688999999999999999886 7999999999988 788999999999999999
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHh--hhhCCCCCC-cCCCCCCCcccHHhHhhcC
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVE--EWIGPGSPR-VRSPSARTLESIPETEDNG 270 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~w~~~~~~~-~~~~~~~~~~~l~~~l~~a 270 (377)
+ +..+|++++++|||||.+++.++......... ....... .|....... .....+++.+++.++|+++
T Consensus 110 ~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 180 (259)
T 2p35_A 110 D---HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHI------AMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPK 180 (259)
T ss_dssp T---HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHH------HHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGG
T ss_pred C---HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHH------HHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhc
Confidence 8 88999999999999999999987543211100 0111111 132211111 1245678889999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 181 Gf~v 184 (259)
T 2p35_A 181 SSRV 184 (259)
T ss_dssp EEEE
T ss_pred CCce
Confidence 9965
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-19 Score=163.18 Aligned_cols=142 Identities=25% Similarity=0.324 Sum_probs=110.8
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++..+|+.++++++++||+|++..
T Consensus 58 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 58 DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALE 137 (273)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEec
Confidence 356789999999999997532 2378999999999999998875 47899999999999899999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+++ +..+|+++.++|||||.+++.++......... .......+.. .......++.+++.+++
T Consensus 138 ~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~l 203 (273)
T 3bus_A 138 SLHHMPD---RGRALREMARVLRPGGTVAIADFVLLAPVEGA-------KKEAVDAFRA----GGGVLSLGGIDEYESDV 203 (273)
T ss_dssp CTTTSSC---HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHH-------HHHHHHHHHH----HHTCCCCCCHHHHHHHH
T ss_pred hhhhCCC---HHHHHHHHHHHcCCCeEEEEEEeeccCCCChh-------HHHHHHHHHh----hcCccCCCCHHHHHHHH
Confidence 9999999 88999999999999999999987643221111 0111111110 11234567889999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 204 ~~aGf~~ 210 (273)
T 3bus_A 204 RQAELVV 210 (273)
T ss_dssp HHTTCEE
T ss_pred HHcCCeE
Confidence 9999977
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-19 Score=156.64 Aligned_cols=136 Identities=24% Similarity=0.295 Sum_probs=111.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCc
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDF 179 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~ 179 (377)
.+...+ .+.++.+|||+|||+|.++.. .+..+|+|+|+|+.+++.++++ ++.+..+|+.++++++++
T Consensus 28 ~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 28 KVLKEF-GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHH-TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred HHHHHh-CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence 444444 456788999999999997532 4678999999999999999876 488999999999988999
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCC
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSART 259 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 259 (377)
||+|++..+++|+++ +..+++++.++|||||.+++.++....... .......++
T Consensus 107 fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------------------~~~~~~~~~ 160 (219)
T 3dh0_A 107 VDFIFMAFTFHELSE---PLKFLEELKRVAKPFAYLAIIDWKKEERDK-----------------------GPPPEEVYS 160 (219)
T ss_dssp EEEEEEESCGGGCSS---HHHHHHHHHHHEEEEEEEEEEEECSSCCSS-----------------------SCCGGGSCC
T ss_pred eeEEEeehhhhhcCC---HHHHHHHHHHHhCCCeEEEEEEeccccccc-----------------------CCchhcccC
Confidence 999999999999998 889999999999999999999876543210 111133567
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.+++.++++++||++
T Consensus 161 ~~~~~~~l~~~Gf~~ 175 (219)
T 3dh0_A 161 EWEVGLILEDAGIRV 175 (219)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHCCCEE
Confidence 889999999999976
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-19 Score=162.26 Aligned_cols=182 Identities=14% Similarity=0.237 Sum_probs=125.2
Q ss_pred hhhHHHHHHHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHH
Q 017080 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 85 ~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~ 160 (377)
.++...+.++|+....... ........+...+..++++.+|||||||+|.++.. .+ .+|+|+|+|+.+++.+++
T Consensus 10 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~ 87 (257)
T 3f4k_A 10 DFDFSFICNYFKLLKRQGP-GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNE 87 (257)
T ss_dssp GSCHHHHHHHHTTSSCSSS-CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHH
T ss_pred hhhHHHHHHHHcCccccCC-CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHH
Confidence 3344555566654432211 11111223334444567888999999999997532 34 499999999999999887
Q ss_pred c--------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhc
Q 017080 161 R--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTK 232 (377)
Q Consensus 161 ~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 232 (377)
+ +++++++|+.++++++++||+|++..+++|+ + +..+++++.++|||||++++.++.......
T Consensus 88 ~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----- 158 (257)
T 3f4k_A 88 NAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-G---FERGMNEWSKYLKKGGFIAVSEASWFTSER----- 158 (257)
T ss_dssp HHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-C---HHHHHHHHHTTEEEEEEEEEEEEEESSSCC-----
T ss_pred HHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhhc-C---HHHHHHHHHHHcCCCcEEEEEEeeccCCCC-----
Confidence 6 2889999999999889999999999999999 6 789999999999999999999854221110
Q ss_pred cccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCccccCCcccCCcchhh
Q 017080 233 WTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWE 288 (377)
Q Consensus 233 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~~~~~~~~~~~~~~~ 288 (377)
.......|.... ....+.+++.++++++||++.. ...++...|.+
T Consensus 159 ----~~~~~~~~~~~~------~~~~~~~~~~~~l~~aGf~~v~-~~~~~~~~w~~ 203 (257)
T 3f4k_A 159 ----PAEIEDFWMDAY------PEISVIPTCIDKMERAGYTPTA-HFILPENCWTE 203 (257)
T ss_dssp ----CHHHHHHHHHHC------TTCCBHHHHHHHHHHTTEEEEE-EEECCGGGTCC
T ss_pred ----hHHHHHHHHHhC------CCCCCHHHHHHHHHHCCCeEEE-EEECChhhHHH
Confidence 011112232211 1245788999999999998733 23445555543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-19 Score=161.36 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=113.8
Q ss_pred HHhCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
.+..++++.+|||||||+|.++. ..++.+|+|+|+|+.+++.++++ +++++++|+.++++++++||+|+
T Consensus 40 ~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 119 (267)
T 3kkz_A 40 FIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW 119 (267)
T ss_dssp TCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred hcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEE
Confidence 33345688999999999999753 24677999999999999999876 38899999999998899999999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHH
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIP 264 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 264 (377)
+..+++|+ + +..+++++.++|||||++++.++....... .......|... .....+.+++.
T Consensus 120 ~~~~~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---------~~~~~~~~~~~------~~~~~~~~~~~ 180 (267)
T 3kkz_A 120 SEGAIYNI-G---FERGLNEWRKYLKKGGYLAVSECSWFTDER---------PAEINDFWMDA------YPEIDTIPNQV 180 (267)
T ss_dssp ESSCGGGT-C---HHHHHHHHGGGEEEEEEEEEEEEEESSSCC---------CHHHHHHHHHH------CTTCEEHHHHH
T ss_pred EcCCceec-C---HHHHHHHHHHHcCCCCEEEEEEeeecCCCC---------hHHHHHHHHHh------CCCCCCHHHHH
Confidence 99999999 6 789999999999999999999865321110 01111222111 12356778999
Q ss_pred hHhhcCCCccccCCcccCCcch
Q 017080 265 ETEDNGSEEQGKEPKQSVPDKL 286 (377)
Q Consensus 265 ~~l~~aGF~~~~~~~~~~~~~~ 286 (377)
++++++||++... ..++.+.|
T Consensus 181 ~~l~~aGf~~v~~-~~~~~~~w 201 (267)
T 3kkz_A 181 AKIHKAGYLPVAT-FILPENCW 201 (267)
T ss_dssp HHHHHTTEEEEEE-EECCGGGT
T ss_pred HHHHHCCCEEEEE-EECCHhHH
Confidence 9999999987322 33444455
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=159.20 Aligned_cols=129 Identities=17% Similarity=0.214 Sum_probs=100.9
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------------------CCeEEEeeCCCCCCCC-
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------------------GHEVLVADAVNLPYRS- 177 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~~~~~~- 177 (377)
++++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.|+++ +++++++|+.++++.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 46788999999999997642 2477999999999999999875 4789999999998765
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCC
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA 257 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 257 (377)
++||+|++..+++|++.++ ..+++++++++|||||++++.+...... . .......
T Consensus 100 ~~fD~v~~~~~l~~l~~~~-~~~~l~~~~r~LkpgG~~~l~~~~~~~~--------------------~----~~~~~~~ 154 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADM-RERYVQHLEALMPQACSGLLITLEYDQA--------------------L----LEGPPFS 154 (203)
T ss_dssp HSEEEEEEESCGGGSCHHH-HHHHHHHHHHHSCSEEEEEEEEESSCSS--------------------S----SSSCCCC
T ss_pred CCEEEEEECcchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEEEecCcc--------------------c----cCCCCCC
Confidence 8999999999999998643 6789999999999999966655432210 0 0001112
Q ss_pred CCcccHHhHhhcCCCcc
Q 017080 258 RTLESIPETEDNGSEEQ 274 (377)
Q Consensus 258 ~~~~~l~~~l~~aGF~~ 274 (377)
.+.+++.+++++ ||++
T Consensus 155 ~~~~el~~~~~~-gf~i 170 (203)
T 1pjz_A 155 VPQTWLHRVMSG-NWEV 170 (203)
T ss_dssp CCHHHHHHTSCS-SEEE
T ss_pred CCHHHHHHHhcC-CcEE
Confidence 567889999998 9976
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-19 Score=163.67 Aligned_cols=147 Identities=18% Similarity=0.281 Sum_probs=108.4
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++.+.++|+.++++++++||+|++..+++
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 457788999999999997642 3467999999999999999876 58899999999998899999999999999
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
|+++ +..+++++.++|||||.+++. +..... .. ...+........... . .+.......++.+++.++|+++
T Consensus 116 ~~~~---~~~~l~~~~~~L~pgG~l~~~-~~~~~~-~~-~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 116 LVPD---WPKVLAEAIRVLKPGGALLEG-WDQAEA-SP-EWTLQERWRAFAAEE-G--FPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GCTT---HHHHHHHHHHHEEEEEEEEEE-EEEECC-CH-HHHHHHHHHHHHHHH-T--CCCCCCHHHHHHHHHHHHHHHT
T ss_pred hcCC---HHHHHHHHHHHCCCCcEEEEE-ecCCCc-cH-HHHHHHHHHHHHHHh-C--CCcccccccCCHHHHHHHHHHc
Confidence 9998 889999999999999999988 332210 00 000111111111111 1 0111123356678899999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 187 Gf~~ 190 (263)
T 2yqz_A 187 GLKP 190 (263)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 9965
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=159.22 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=117.9
Q ss_pred ChhhhHHHHHHHHHhhCcccccccccchHHHHHHHh---CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHH
Q 017080 83 TPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKI 157 (377)
Q Consensus 83 ~~~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~---~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~ 157 (377)
...++.+++.+.|......|..... .+.+..++. ...++.+|||+|||+|..+.. ..+.+|+|+|+|+.|++.
T Consensus 28 ~~~~~~~~Wd~~y~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~ 105 (252)
T 2gb4_A 28 NQVLTLEDWKEKWVTRHISFHQEQG--HQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIRE 105 (252)
T ss_dssp TCCCCHHHHHHHHHHTCCTTCCTTC--CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred cccCCHHHHHHHHhcCCCCcccCCC--CHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 3356678899999775444432221 122223322 235778999999999997642 347899999999999999
Q ss_pred HHHc------------------------CCeEEEeeCCCCCCCC-CceeEEEeccchhhcCChHHHHHHHHHHHHccccC
Q 017080 158 CVDR------------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212 (377)
Q Consensus 158 a~~~------------------------~~~~~~~d~~~~~~~~-~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lkpg 212 (377)
|+++ +++++++|+.++++.+ ++||+|++..+++|++.++ +..+++++.++||||
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~-~~~~l~~~~~~LkpG 184 (252)
T 2gb4_A 106 FFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGD-HDRYADIILSLLRKE 184 (252)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGG-HHHHHHHHHHTEEEE
T ss_pred HHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHH-HHHHHHHHHHHcCCC
Confidence 9653 3678999999988764 8999999999999998654 688999999999999
Q ss_pred cEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 213 SLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 213 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
|++++.++..... . .. .....++.+++.+++.. +|++
T Consensus 185 G~l~l~~~~~~~~------------------~----~~--g~~~~~~~~el~~~l~~-~f~v 221 (252)
T 2gb4_A 185 FQYLVAVLSYDPT------------------K----HA--GPPFYVPSAELKRLFGT-KCSM 221 (252)
T ss_dssp EEEEEEEEECCTT------------------S----CC--CSSCCCCHHHHHHHHTT-TEEE
T ss_pred eEEEEEEEecCCc------------------c----CC--CCCCCCCHHHHHHHhhC-CeEE
Confidence 9998765432210 0 00 01112577889999987 5966
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-19 Score=162.47 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=113.8
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+...+ .+.++.+|||||||+|.++.. .++.+|+|+|+|+.|++.++++ ++.+.++|+.++++ +++||+|++..
T Consensus 48 ~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~ 125 (279)
T 3ccf_A 48 DLLQLL-NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA 125 (279)
T ss_dssp HHHHHH-CCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES
T ss_pred HHHHHh-CCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc
Confidence 444444 356788999999999997642 3788999999999999999987 79999999999887 68999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+++ +..+|++++++|||||++++.++..... ..+...+ ...................+.+.+++.++|
T Consensus 126 ~l~~~~d---~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 126 MLHWVKE---PEAAIASIHQALKSGGRFVAEFGGKGNI-KYILEAL----YNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECTTTT-HHHHHHH----HHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred hhhhCcC---HHHHHHHHHHhcCCCcEEEEEecCCcch-HHHHHHH----HHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 9999999 8899999999999999999988764321 1111111 111111100001112223566889999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 198 ~~aGf~~ 204 (279)
T 3ccf_A 198 EKQGFDV 204 (279)
T ss_dssp HHHTEEE
T ss_pred HHcCCEE
Confidence 9999977
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-19 Score=159.91 Aligned_cols=142 Identities=17% Similarity=0.195 Sum_probs=109.7
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++.+.++|++++++++++||+|++..++
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 97 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA 97 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCch
Confidence 467889999999999997532 2345999999999999998875 4889999999999989999999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
+|+++ +..+|+++.++|||||++++.++..... .....+. ........ ..+...++.+++.++|++
T Consensus 98 ~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~ll~~ 163 (239)
T 1xxl_A 98 HHFSD---VRKAVREVARVLKQDGRFLLVDHYAPED--PVLDEFV----NHLNRLRD-----PSHVRESSLSEWQAMFSA 163 (239)
T ss_dssp GGCSC---HHHHHHHHHHHEEEEEEEEEEEECBCSS--HHHHHHH----HHHHHHHC-----TTCCCCCBHHHHHHHHHH
T ss_pred hhccC---HHHHHHHHHHHcCCCcEEEEEEcCCCCC--hhHHHHH----HHHHHhcc-----ccccCCCCHHHHHHHHHH
Confidence 99999 8899999999999999999987654322 1111110 00111111 122455788999999999
Q ss_pred CCCcc
Q 017080 270 GSEEQ 274 (377)
Q Consensus 270 aGF~~ 274 (377)
+||.+
T Consensus 164 aGf~~ 168 (239)
T 1xxl_A 164 NQLAY 168 (239)
T ss_dssp TTEEE
T ss_pred CCCcE
Confidence 99976
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-19 Score=162.18 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=89.5
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEecc-chhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIA-VLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~-~l~h~~~ 194 (377)
++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++ ++.++++|+.++++ +++||+|++.. +++|+++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence 45678999999999998643 3466999999999999999987 79999999999887 78999999998 9999987
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.+++..+|++++++|||||.+++.++..
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 154 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWF 154 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5558899999999999999999986543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=155.72 Aligned_cols=160 Identities=14% Similarity=0.196 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhhCcccccccccchHHHHHHHhCC-CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-
Q 017080 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR- 161 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~- 161 (377)
.+.+++.+.|......|... .....+..++... .++.+|||||||+|.++.. .++.+|+|+|+|+.+++.++++
T Consensus 31 ~~~~~w~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~ 108 (235)
T 3lcc_A 31 VEEGGWEKCWEEEITPWDQG--RATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETY 108 (235)
T ss_dssp HHHHHHHHHHHTTCCTTCCS--SCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCCcccC--CCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHh
Confidence 44567777776654444422 2223444444322 2345999999999997642 5778999999999999999886
Q ss_pred -------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc
Q 017080 162 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234 (377)
Q Consensus 162 -------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 234 (377)
+++++++|+.+++ ++++||+|++..+++|++..+ +..+++++.++|||||.+++..+......
T Consensus 109 ~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-------- 178 (235)
T 3lcc_A 109 GSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEM-RPAWAKSMYELLKPDGELITLMYPITDHV-------- 178 (235)
T ss_dssp TTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGG-HHHHHHHHHHHEEEEEEEEEEECCCSCCC--------
T ss_pred hccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHH-HHHHHHHHHHHCCCCcEEEEEEecccccC--------
Confidence 2789999999976 466999999999999998433 88999999999999999999876543110
Q ss_pred cchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 235 PLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 235 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
......++.+++.++++++||++
T Consensus 179 -----------------~~~~~~~~~~~~~~~l~~~Gf~~ 201 (235)
T 3lcc_A 179 -----------------GGPPYKVDVSTFEEVLVPIGFKA 201 (235)
T ss_dssp -----------------SCSSCCCCHHHHHHHHGGGTEEE
T ss_pred -----------------CCCCccCCHHHHHHHHHHcCCeE
Confidence 01112367789999999999977
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=157.35 Aligned_cols=138 Identities=20% Similarity=0.153 Sum_probs=108.1
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++.++|+.++++ +++||+|++..
T Consensus 33 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 33 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVG 111 (256)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECC
Confidence 467889999999999997532 2367999999999999999875 47899999999887 88999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+++ +..+|++++++|||||.+++.++...... ....+...|.. .......+.+++.+++
T Consensus 112 ~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~---------~~~~~~~~~~~-----~~~~~~~~~~~~~~~l 174 (256)
T 1nkv_A 112 ATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLP---------ATEEIAQACGV-----SSTSDFLTLPGLVGAF 174 (256)
T ss_dssp CGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEEETTCC---------SSHHHHHTTTC-----SCGGGSCCHHHHHHHH
T ss_pred ChHhcCC---HHHHHHHHHHHcCCCeEEEEecCcccCCC---------ChHHHHHHHhc-----ccccccCCHHHHHHHH
Confidence 9999998 88999999999999999999875432211 01122222321 1123467888999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||.+
T Consensus 175 ~~aGf~~ 181 (256)
T 1nkv_A 175 DDLGYDV 181 (256)
T ss_dssp HTTTBCC
T ss_pred HHCCCee
Confidence 9999976
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-19 Score=164.09 Aligned_cols=147 Identities=22% Similarity=0.233 Sum_probs=109.8
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.++++.+|||||||+|.++. ..|+.+|+|+|+|+.+++.++++ ++.++.+|+.++++++++||+|++..
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 113 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF 113 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence 45788999999999999753 36789999999999999999876 57899999999998899999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhh-hhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL-VTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
+++|+++ +..+++++.++|||||++++.++......... ..........+..... ......++..++.++
T Consensus 114 ~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~ 184 (276)
T 3mgg_A 114 VLEHLQS---PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQA------YMKGNSLVGRQIYPL 184 (276)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHH------HTTCCTTGGGGHHHH
T ss_pred hhhhcCC---HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHH------hcCCCcchHHHHHHH
Confidence 9999999 88999999999999999999886532110000 0000000011111000 011234566889999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
|+++||++
T Consensus 185 l~~aGf~~ 192 (276)
T 3mgg_A 185 LQESGFEK 192 (276)
T ss_dssp HHHTTCEE
T ss_pred HHHCCCCe
Confidence 99999987
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-19 Score=166.82 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=99.3
Q ss_pred CCCCEEEEECCccCccc--------ccCCCceE--EEEeCCHHHHHHHHHc--------CCeE--EEeeCCCCC------
Q 017080 121 PSGSLVLDAGCGNGKYL--------GLNPDCFF--VGCDISPSLIKICVDR--------GHEV--LVADAVNLP------ 174 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~--------~~~~~~~v--~gvD~s~~~~~~a~~~--------~~~~--~~~d~~~~~------ 174 (377)
.++.+|||||||+|.++ ...++..| +|+|+|+.|++.|+++ ++.+ ..+++++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45679999999999642 22466754 9999999999998875 2233 344444332
Q ss_pred CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCC
Q 017080 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRS 254 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 254 (377)
+++++||+|++..++||++| +.++|++++|+|||||++++........ |......+ |... ....+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~-------~~~~~~~~---~~~~--~~~~~ 195 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSSG-------WDKLWKKY---GSRF--PQDDL 195 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTSH-------HHHHHHHH---GGGS--CCCTT
T ss_pred cCCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEEEecCCcc-------HHHHHHHH---HHhc--cCCCc
Confidence 46789999999999999999 8999999999999999999987653211 11111111 1110 11123
Q ss_pred CCCCCcccHHhHhhcCCCcc
Q 017080 255 PSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 255 ~~~~~~~~l~~~l~~aGF~~ 274 (377)
..+++.+++.++|+++||++
T Consensus 196 ~~~~~~~~~~~~l~~aGf~~ 215 (292)
T 2aot_A 196 CQYITSDDLTQMLDNLGLKY 215 (292)
T ss_dssp CCCCCHHHHHHHHHHHTCCE
T ss_pred ccCCCHHHHHHHHHHCCCce
Confidence 45678899999999999976
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=169.06 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=108.7
Q ss_pred CCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc---------------CCeEEEeeCCCC------
Q 017080 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVNL------ 173 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~---------------~~~~~~~d~~~~------ 173 (377)
+.++.+|||||||+|.++. . .++.+|+|+|+|+.+++.++++ +++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4578899999999998653 2 3788999999999999999874 588999999987
Q ss_pred CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcC
Q 017080 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVR 253 (377)
Q Consensus 174 ~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 253 (377)
++++++||+|++..+++|+++ +..+|++++++|||||++++.++........... .....|.. .
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-------~~~~~~~~------~ 224 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQ-------QDPILYGE------C 224 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHH-------HCHHHHHT------T
T ss_pred CCCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHh-------hhHHHhhc------c
Confidence 888999999999999999999 8999999999999999999998654432111111 00111111 1
Q ss_pred CCCCCCcccHHhHhhcCCCcc
Q 017080 254 SPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 254 ~~~~~~~~~l~~~l~~aGF~~ 274 (377)
....++.+++.++|+++||.+
T Consensus 225 ~~~~~~~~~~~~ll~~aGF~~ 245 (383)
T 4fsd_A 225 LGGALYLEDFRRLVAEAGFRD 245 (383)
T ss_dssp CTTCCBHHHHHHHHHHTTCCC
T ss_pred cccCCCHHHHHHHHHHCCCce
Confidence 123566789999999999976
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=159.62 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=86.8
Q ss_pred CCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
++.+|||||||+|.++.. ..+. +|+|+|+|+.+++.++++ ++.++++|+.++++++++||+|++..+++|+++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 123 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS 123 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh
Confidence 678999999999997642 2233 999999999999999987 578999999999988999999999999999988
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+..+|++++++|||||.+++.++.
T Consensus 124 ---~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 124 ---FDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeCC
Confidence 899999999999999999998754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=154.34 Aligned_cols=155 Identities=20% Similarity=0.225 Sum_probs=111.0
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----C--------CeEEEeeCCCCCCCCCceeEEEe
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--------HEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~--------~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
++++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ + +.+..+|+..+++++++||+|++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 46788999999999997642 2377999999999999999985 2 47899999999988999999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHH--HhhhhCCCCC---CcCCCCCCCc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKY--VEEWIGPGSP---RVRSPSARTL 260 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~--~~~w~~~~~~---~~~~~~~~~~ 260 (377)
..+++|+++.+....+++++.++|||||.+++.++............+....... ...+...... .......++.
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE 187 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence 9999999995445599999999999999999998765432211111000000000 0000000000 0112346789
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
+++.++++++||++
T Consensus 188 ~~l~~ll~~aGf~~ 201 (235)
T 3sm3_A 188 KELVFLLTDCRFEI 201 (235)
T ss_dssp HHHHHHHHTTTEEE
T ss_pred HHHHHHHHHcCCEE
Confidence 99999999999976
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=157.34 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=118.0
Q ss_pred HHHHHHHHHhhCccccccc--ccch--------HHHHHHHhC----CCCCCEEEEECCccCccccc---CCCceEEEEeC
Q 017080 88 KKYVHRVYDAIAPHFSSTR--FAKW--------PKVATFLNS----LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDI 150 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~~--~~~~--------~~~~~~l~~----~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~ 150 (377)
.+...++|+..+..|+... +..+ ..+...+.. ..++.+|||||||+|.++.. ....+|+|+|+
T Consensus 31 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~ 110 (241)
T 2ex4_A 31 YSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDI 110 (241)
T ss_dssp HHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEES
T ss_pred HHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeC
Confidence 3456677888877665311 1111 122222221 23578999999999997642 22459999999
Q ss_pred CHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 151 SPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 151 s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
|+.+++.++++ ++.++.+|+.++++++++||+|++..+++|+++++ ...+|+++.++|||||.+++.++...
T Consensus 111 s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~ 189 (241)
T 2ex4_A 111 TEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQH-LAEFLRRCKGSLRPNGIIVIKDNMAQ 189 (241)
T ss_dssp CHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred CHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEEccCC
Confidence 99999999876 26789999999888888999999999999998843 56999999999999999999886543
Q ss_pred ccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 224 QEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
. . ..+ .. .......+.+++.++++++||++
T Consensus 190 ~--~---~~~------------~~----~~~~~~~~~~~~~~~l~~aGf~~ 219 (241)
T 2ex4_A 190 E--G---VIL------------DD----VDSSVCRDLDVVRRIICSAGLSL 219 (241)
T ss_dssp S--S---EEE------------ET----TTTEEEEBHHHHHHHHHHTTCCE
T ss_pred C--c---cee------------cc----cCCcccCCHHHHHHHHHHcCCeE
Confidence 2 0 000 00 00111236788999999999976
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=156.61 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=109.9
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++++|+.++++++++||+|++..+++|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 132 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILA 132 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHh
Confidence 46788999999999997642 1278999999999999999986 578999999999988999999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
++..+ +..+|+++.++|||||.+++.++..... ..+......+... .....++.+++.++++++|
T Consensus 133 ~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~-----~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~G 197 (266)
T 3ujc_A 133 LSLEN-KNKLFQKCYKWLKPTGTLLITDYCATEK-----ENWDDEFKEYVKQ---------RKYTLITVEEYADILTACN 197 (266)
T ss_dssp SCHHH-HHHHHHHHHHHEEEEEEEEEEEEEESCG-----GGCCHHHHHHHHH---------HTCCCCCHHHHHHHHHHTT
T ss_pred cChHH-HHHHHHHHHHHcCCCCEEEEEEeccCCc-----ccchHHHHHHHhc---------CCCCCCCHHHHHHHHHHcC
Confidence 95322 8999999999999999999998764431 1111111111111 1234678899999999999
Q ss_pred Ccc
Q 017080 272 EEQ 274 (377)
Q Consensus 272 F~~ 274 (377)
|++
T Consensus 198 f~~ 200 (266)
T 3ujc_A 198 FKN 200 (266)
T ss_dssp CEE
T ss_pred CeE
Confidence 976
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=154.91 Aligned_cols=108 Identities=21% Similarity=0.333 Sum_probs=91.5
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeE
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~ 182 (377)
+..+...+ ...++.+|||||||+|.++.. ..+. +|+|+|+|+.+++.++++ ++.+..+|+..+++++++||+
T Consensus 32 ~~~l~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 32 WPALRAML-PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHHHS-CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHHhc-cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 33444444 345778999999999997542 2245 999999999999999987 478999999998888899999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|++..+++|+++ +..+|++++++|||||.+++.++.
T Consensus 111 v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 111 AYSSLALHYVED---VARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEeccccccch---HHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999999999998 889999999999999999998764
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=159.97 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=112.2
Q ss_pred CCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
.+.++.+|||||||+|.++. ..++.+|+|+|+|+.+++.++++ +++++++|+.+++++ ++||+|++
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~ 193 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTS 193 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEE
Confidence 46788999999999999542 36788999999999999999986 278999999999887 99999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc-----cchHHHHhhhhCCCCCCcCCCCCCCc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT-----PLTQKYVEEWIGPGSPRVRSPSARTL 260 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~ 260 (377)
..+++|+++.+....+++++.++|||||++++.++........ ...|. +.........+. .....+...+++.
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 271 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSP-DSPWDMQAIDPHDLQLQQLVFT-RLIQPRWNALRTH 271 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCT-TCCCCGGGSCHHHHHHHHHHHH-HTTCCSCCCCCCH
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccc-cccceeeccccchhhhhhhHHH-HHHhhhhhccCCH
Confidence 9999999996545568999999999999999988664322111 11111 000000000000 0111223456789
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
+++.++|+++||++
T Consensus 272 ~~~~~~l~~aGF~~ 285 (305)
T 3ocj_A 272 AQTRAQLEEAGFTD 285 (305)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHCCCEE
Confidence 99999999999976
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=162.79 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=108.2
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++ +++++.+|+.++++++++||+|++..+
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 56789999999999997642 2268999999999999999875 488999999999988999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhh
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETED 268 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~ 268 (377)
++|+ + +..+|+++.++|||||++++.++........... ... .....+. ...++.+++.++++
T Consensus 195 l~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~----~~~-~~~~~~~--------~~~~s~~~~~~~l~ 257 (312)
T 3vc1_A 195 TMYV-D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSK----WVS-QINAHFE--------CNIHSRREYLRAMA 257 (312)
T ss_dssp GGGS-C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCH----HHH-HHHHHHT--------CCCCBHHHHHHHHH
T ss_pred hhhC-C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhH----HHH-HHHhhhc--------CCCCCHHHHHHHHH
Confidence 9999 6 7899999999999999999998765432111000 111 1111111 13667899999999
Q ss_pred cCCCcc
Q 017080 269 NGSEEQ 274 (377)
Q Consensus 269 ~aGF~~ 274 (377)
++||++
T Consensus 258 ~aGf~~ 263 (312)
T 3vc1_A 258 DNRLVP 263 (312)
T ss_dssp TTTEEE
T ss_pred HCCCEE
Confidence 999976
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=152.09 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=113.9
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc-c--cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeE
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL-G--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~-~--~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
++...+..+.++.+|||+|||+|.++ . ..++.+|+|+|+|+.+++.++++ ++++.++|+.++++++++||+
T Consensus 13 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 92 (209)
T 2p8j_A 13 RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSF 92 (209)
T ss_dssp HHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEE
T ss_pred HHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeE
Confidence 44455556677899999999999873 2 25678999999999999998875 588999999999988899999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCccc
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLES 262 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 262 (377)
|++..+++|++. +++..+++++.++|||||.+++.+++.......... ........ ... ........+++.++
T Consensus 93 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~~-~~~--~~~~~~~~~~~~~e 165 (209)
T 2p8j_A 93 VYSYGTIFHMRK-NDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGE---KIGEGEFL-QLE--RGEKVIHSYVSLEE 165 (209)
T ss_dssp EEECSCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSE---EEETTEEE-ECC---CCCEEEEEECHHH
T ss_pred EEEcChHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEecccchhccchh---hhccccce-ecc--CCCceeEEecCHHH
Confidence 999999999953 338999999999999999999998765432110000 00000000 000 11112235778889
Q ss_pred HHhHhhcCCCcc
Q 017080 263 IPETEDNGSEEQ 274 (377)
Q Consensus 263 l~~~l~~aGF~~ 274 (377)
+.+++.++||..
T Consensus 166 ~~~~~~~~g~~~ 177 (209)
T 2p8j_A 166 ADKYFKDMKVLF 177 (209)
T ss_dssp HHHTTTTSEEEE
T ss_pred HHHHHhhcCcee
Confidence 999999999955
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-18 Score=153.85 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=90.4
Q ss_pred HHHHHhCC-CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEE
Q 017080 113 VATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 113 ~~~~l~~~-~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
+...+... .++.+|||||||+|.++.. ..+.+++|+|+|+.+++.++++ ++.+.++|+.+++++ ++||+|
T Consensus 27 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v 105 (246)
T 1y8c_A 27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLI 105 (246)
T ss_dssp HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEE
T ss_pred HHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEE
Confidence 33444332 4678999999999997642 3367999999999999999876 689999999998876 899999
Q ss_pred Eecc-chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIA-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~-~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++.. +++|+++.+++..+|++++++|||||.+++..++
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9998 9999976555899999999999999999997765
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=154.90 Aligned_cols=175 Identities=17% Similarity=0.120 Sum_probs=119.3
Q ss_pred HHHHHHHHhhCccccccc----cc-----chHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHH
Q 017080 89 KYVHRVYDAIAPHFSSTR----FA-----KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKI 157 (377)
Q Consensus 89 ~~~~~~y~~~a~~y~~~~----~~-----~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~ 157 (377)
+.+.+.|+..+..|+... .. ....+...+.. .++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~ 89 (227)
T 3e8s_A 11 DALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILG-RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDA 89 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHH-TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhc-CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 455666776666665421 11 11234444433 3558999999999997642 347799999999999999
Q ss_pred HHHc-CCeEEEeeCCCC---CCCC-CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh-hhh
Q 017080 158 CVDR-GHEVLVADAVNL---PYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS-LVT 231 (377)
Q Consensus 158 a~~~-~~~~~~~d~~~~---~~~~-~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~ 231 (377)
++++ ++.+...|+.++ ++.. ++||+|++..+++ ..+ +..++++++++|||||++++.++........ ...
T Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 165 (227)
T 3e8s_A 90 ARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD---IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD 165 (227)
T ss_dssp HHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC---CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC
T ss_pred HHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hhh---HHHHHHHHHHHhCCCeEEEEEecCccccCcccccc
Confidence 9988 678888888776 5444 4599999999999 666 7899999999999999999998765432211 111
Q ss_pred ccccchHHHHhhhhCCCCC-CcCCCCCCCcccHHhHhhcCCCcc
Q 017080 232 KWTPLTQKYVEEWIGPGSP-RVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 232 ~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.|.. ..|...... ......+++.+++.++|+++||++
T Consensus 166 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 203 (227)
T 3e8s_A 166 GWRE------ESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRL 203 (227)
T ss_dssp EEEE------ECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEE
T ss_pred ccch------hhhhccccCcccceEEEecHHHHHHHHHHcCCeE
Confidence 1100 011111111 111234568899999999999977
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=149.02 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=101.8
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
.++.+|||||||+|.++. ..+..+|+|+|+|+.+++.++++ +++++++|+...+.++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 467899999999999764 24667999999999999999887 58899999988777778999999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHH
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIP 264 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 264 (377)
+..+++|+++++ ...+++++.++|||||.+++...... . ..+.. +.........+...++.+++.
T Consensus 108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~li~~~~~~~---~---~~~~~--------~~~~~~~~~~~~~~~~~~~l~ 172 (217)
T 3jwh_A 108 VIEVIEHLDLSR-LGAFERVLFEFAQPKIVIVTTPNIEY---N---VKFAN--------LPAGKLRHKDHRFEWTRSQFQ 172 (217)
T ss_dssp EESCGGGCCHHH-HHHHHHHHHTTTCCSEEEEEEEBHHH---H---HHTC-------------------CCSCBCHHHHH
T ss_pred eHHHHHcCCHHH-HHHHHHHHHHHcCCCEEEEEccCccc---c---hhhcc--------cccccccccccccccCHHHHH
Confidence 999999998633 58999999999999996665542110 0 00000 000001112234457888888
Q ss_pred ----hHhhcCCCcc
Q 017080 265 ----ETEDNGSEEQ 274 (377)
Q Consensus 265 ----~~l~~aGF~~ 274 (377)
++++++||.+
T Consensus 173 ~~~~~~~~~~Gf~v 186 (217)
T 3jwh_A 173 NWANKITERFAYNV 186 (217)
T ss_dssp HHHHHHHHHSSEEE
T ss_pred HHHHHHHHHcCceE
Confidence 8889999966
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=148.95 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=109.8
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CCCCCCceeEEEeccchhhcCChH
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~--~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
.++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++..++..+|+.+ .++++++||+|++..+++|+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~-- 108 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD-- 108 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC--
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCC--
Confidence 4778999999999997532 225899999999999999998877899999987 5677889999999999999999
Q ss_pred HHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCC--CCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 197 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGS--PRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+..+++++.++|||||.+++.+++...... . .......|..... ....+...++.+++.++++++||++
T Consensus 109 -~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 179 (230)
T 3cc8_A 109 -PWAVIEKVKPYIKQNGVILASIPNVSHISV-L-------APLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSI 179 (230)
T ss_dssp -HHHHHHHTGGGEEEEEEEEEEEECTTSHHH-H-------HHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEEeCCcchHHH-H-------HHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeE
Confidence 789999999999999999999876432110 0 0011111211100 1122346788999999999999977
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=153.31 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=99.7
Q ss_pred CCCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc-----------------------------------
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----------------------------------- 161 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~----------------------------------- 161 (377)
..++.+|||||||+|.+... .+++ +|+|+|+|+.|++.|+++
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 45678999999999987543 4454 799999999999988753
Q ss_pred -CCe-EEEeeCCCC-CC---CCCceeEEEeccchhhc-CChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc
Q 017080 162 -GHE-VLVADAVNL-PY---RSDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234 (377)
Q Consensus 162 -~~~-~~~~d~~~~-~~---~~~~fD~V~~~~~l~h~-~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 234 (377)
++. ++++|+... |+ ..++||+|++..++||+ ++.+++..++++++++|||||.+++..+..... +.
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------~~ 205 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------YM 205 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-------EE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-------ce
Confidence 122 889999873 43 35799999999999997 443447899999999999999999997543210 00
Q ss_pred cchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 235 PLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 235 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.. ........++.+++.++|+++||++
T Consensus 206 ----------~g---~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 206 ----------VG---KREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp ----------ET---TEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred ----------eC---CeEeeccccCHHHHHHHHHHCCCEE
Confidence 00 0000123567889999999999976
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=149.53 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=102.0
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
.++.+|||||||+|.++. ..+..+|+|+|+|+.+++.++++ +++++++|+...++++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 467899999999999763 24557999999999999999886 68999999988888789999999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHH
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIP 264 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 264 (377)
+..+++|+++++ ...+++++.++|||||.+++. ++.... ..+....... .....+...++.+++.
T Consensus 108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~i~~-~~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~~~l~ 172 (219)
T 3jwg_A 108 VIEVIEHLDENR-LQAFEKVLFEFTRPQTVIVST-PNKEYN-----FHYGNLFEGN--------LRHRDHRFEWTRKEFQ 172 (219)
T ss_dssp EESCGGGCCHHH-HHHHHHHHHTTTCCSEEEEEE-EBGGGG-----GCCCCT-------------GGGCCTTSBCHHHHH
T ss_pred EHHHHHhCCHHH-HHHHHHHHHHhhCCCEEEEEc-cchhhh-----hhhcccCccc--------ccccCceeeecHHHHH
Confidence 999999998633 579999999999999955544 332110 0010000000 0012234456778888
Q ss_pred ----hHhhcCCCcc
Q 017080 265 ----ETEDNGSEEQ 274 (377)
Q Consensus 265 ----~~l~~aGF~~ 274 (377)
++++++||.+
T Consensus 173 ~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 173 TWAVKVAEKYGYSV 186 (219)
T ss_dssp HHHHHHHHHHTEEE
T ss_pred HHHHHHHHHCCcEE
Confidence 7888999966
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-18 Score=154.50 Aligned_cols=164 Identities=9% Similarity=0.028 Sum_probs=116.9
Q ss_pred HHHHHHHhhCccccccc--c-----cchHHHHHHHhC--CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHH
Q 017080 90 YVHRVYDAIAPHFSSTR--F-----AKWPKVATFLNS--LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKI 157 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~--~-----~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~ 157 (377)
...++|+.....|+... + ........++.. ..++.+|||||||+|.++.. ....+|+|+|+|+.+++.
T Consensus 52 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~ 131 (254)
T 1xtp_A 52 KALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEE 131 (254)
T ss_dssp HHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHH
T ss_pred hhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHH
Confidence 45566777666554311 1 111112233333 34678999999999997642 124579999999999999
Q ss_pred HHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhc
Q 017080 158 CVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTK 232 (377)
Q Consensus 158 a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 232 (377)
++++ +++++++|+..+++++++||+|++..+++|+++.+ +..+|+++.++|||||.+++.++......
T Consensus 132 a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------ 204 (254)
T 1xtp_A 132 AKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDAD-FVKFFKHCQQALTPNGYIFFKENCSTGDR------ 204 (254)
T ss_dssp HHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEBC--CC------
T ss_pred HHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEecCCCccc------
Confidence 9986 47889999999888889999999999999997633 88999999999999999999986432110
Q ss_pred cccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 233 WTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 233 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+ +.. ........+.+++.++++++||++
T Consensus 205 ~----------~~~----~~~~~~~~~~~~~~~~l~~aGf~~ 232 (254)
T 1xtp_A 205 F----------LVD----KEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp E----------EEE----TTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred c----------eec----ccCCcccCCHHHHHHHHHHCCCEE
Confidence 0 000 001122457789999999999976
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-18 Score=156.85 Aligned_cols=134 Identities=19% Similarity=0.161 Sum_probs=98.4
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc---------------------C--------------
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---------------------G-------------- 162 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~---------------------~-------------- 162 (377)
.++.+|||||||+|.+... .++.+|+|+|+|+.|++.|+++ +
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 3678999999999995432 3467999999999999988762 1
Q ss_pred --CeEEEeeCCC-CCC-----CCCceeEEEeccchhhcCCh-HHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhcc
Q 017080 163 --HEVLVADAVN-LPY-----RSDFGDAAISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 233 (377)
Q Consensus 163 --~~~~~~d~~~-~~~-----~~~~fD~V~~~~~l~h~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 233 (377)
+.++.+|+.+ +|+ ++++||+|++..+++|+... .++..+|++++++|||||+|++.......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~--------- 220 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES--------- 220 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC---------
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc---------
Confidence 3456678887 553 35679999999999995442 23899999999999999999998532110
Q ss_pred ccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 234 TPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 234 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
|+.. .........++.+++.++|+++||++
T Consensus 221 ----------~~~~-~~~~~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 221 ----------WYLA-GEARLTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp ----------EEEE-TTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred ----------eEEc-CCeeeeeccCCHHHHHHHHHHcCCeE
Confidence 0000 00111234678899999999999976
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-18 Score=168.08 Aligned_cols=136 Identities=11% Similarity=0.105 Sum_probs=104.5
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEE-----eeCCCCCCCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLV-----ADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++++.... .++..+++++++||+|++..+++|+
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~ 184 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHI 184 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhc
Confidence 45788999999999998753 3467999999999999999998665544 3334456668999999999999999
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCC
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSE 272 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF 272 (377)
++ +..+|++++++|||||++++.++...... . . ..|... ...+..+++.+++.++++++||
T Consensus 185 ~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----~------~---~~~~~~---~~~~~~~~s~~~l~~ll~~aGf 245 (416)
T 4e2x_A 185 PY---VQSVLEGVDALLAPDGVFVFEDPYLGDIV----A------K---TSFDQI---FDEHFFLFSATSVQGMAQRCGF 245 (416)
T ss_dssp TT---HHHHHHHHHHHEEEEEEEEEEEECHHHHH----H------H---TCGGGC---STTCCEECCHHHHHHHHHHTTE
T ss_pred CC---HHHHHHHHHHHcCCCeEEEEEeCChHHhh----h------h---cchhhh---hhhhhhcCCHHHHHHHHHHcCC
Confidence 98 89999999999999999999876532110 0 0 001000 1123456888999999999999
Q ss_pred cc
Q 017080 273 EQ 274 (377)
Q Consensus 273 ~~ 274 (377)
++
T Consensus 246 ~~ 247 (416)
T 4e2x_A 246 EL 247 (416)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-18 Score=157.42 Aligned_cols=135 Identities=22% Similarity=0.176 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhCccccccccc----chHHH----HHHH--hCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHH
Q 017080 88 KKYVHRVYDAIAPHFSSTRFA----KWPKV----ATFL--NSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL 154 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~~~~----~~~~~----~~~l--~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~ 154 (377)
.+.+.++|+..+..|...+.. ..+.+ ...+ ..+.++.+|||||||+|.++.. .+..+|+|+|+|+.+
T Consensus 20 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~ 99 (298)
T 1ri5_A 20 KEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVS 99 (298)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHH
T ss_pred HHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHH
Confidence 446677788777666543322 11111 1111 2357889999999999987532 344599999999999
Q ss_pred HHHHHHc--------CCeEEEeeCCCCCC-CCCceeEEEeccchhhc-CChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 155 IKICVDR--------GHEVLVADAVNLPY-RSDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 155 ~~~a~~~--------~~~~~~~d~~~~~~-~~~~fD~V~~~~~l~h~-~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++.|+++ ++.++++|+.++++ ++++||+|++..++||+ .+.+++..+|+++.++|||||.+++.+++.
T Consensus 100 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 100 INDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp HHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 9999876 26889999999887 68899999999999884 333448899999999999999999998764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-18 Score=157.56 Aligned_cols=97 Identities=19% Similarity=0.244 Sum_probs=86.4
Q ss_pred CCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCC------Cce
Q 017080 121 PSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRS------DFG 180 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~------~~f 180 (377)
.++.+|||||||+|.++. . .++.+|+|+|+|+.+++.|+++ +++++++|++++++++ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578899999999999753 2 4788999999999999999874 6889999999988777 899
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|+|++..++||+ + +..+++++.++|||||.+++..+.
T Consensus 115 D~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-D---FEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-C---HHHHHHHHHHhcCCCcEEEEEecC
Confidence 999999999999 7 899999999999999999996543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-18 Score=152.51 Aligned_cols=126 Identities=23% Similarity=0.388 Sum_probs=95.3
Q ss_pred HHhhCccccccc-ccchHHHHHH-HhCCCCCCEEEEECCccCccccc-CCCceEEEEeCCHHHHHHHHHc------CCeE
Q 017080 95 YDAIAPHFSSTR-FAKWPKVATF-LNSLPSGSLVLDAGCGNGKYLGL-NPDCFFVGCDISPSLIKICVDR------GHEV 165 (377)
Q Consensus 95 y~~~a~~y~~~~-~~~~~~~~~~-l~~~~~~~~vLDiGcG~G~~~~~-~~~~~v~gvD~s~~~~~~a~~~------~~~~ 165 (377)
|+..+..|+... ...+...... +..++++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ ++++
T Consensus 4 y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~ 83 (243)
T 3d2l_A 4 YEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDF 83 (243)
T ss_dssp --CTTHHHHHHTTTCCHHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEE
Confidence 555555555411 1222333332 33456789999999999997642 1118999999999999999875 5899
Q ss_pred EEeeCCCCCCCCCceeEEEecc-chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 166 LVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 166 ~~~d~~~~~~~~~~fD~V~~~~-~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++|+.+++++ ++||+|++.. +++|+.+.+++..+++++.++|||||.+++..++
T Consensus 84 ~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 84 WVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp EECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99999988765 8899999987 9999977666889999999999999999997654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=152.77 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=105.5
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++.+..+|+.+++ ++||+|++..+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~ 138 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA 138 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCc
Confidence 46788999999999987532 2356999999999999999875 5788999998765 88999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccch--HHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLT--QKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
++|+++.+ +..+++++.++|||||.+++.++........ .....+.. ......|.... ........+.+++.++
T Consensus 139 l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~ 214 (287)
T 1kpg_A 139 FEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGLHPKEI-HERGLPMSFTFARFLKFIVTE--IFPGGRLPSIPMVQEC 214 (287)
T ss_dssp GGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEECCHHHH-TTTTCSCHHHHHHHHHHHHHH--TSTTCCCCCHHHHHHH
T ss_pred hhhcChHH-HHHHHHHHHHhcCCCCEEEEEEecCCCcccc-ccccccccccccchhhhHHhe--eCCCCCCCCHHHHHHH
Confidence 99995322 8899999999999999999998765432210 00000000 00011111100 0111245688999999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
++++||++
T Consensus 215 l~~aGf~~ 222 (287)
T 1kpg_A 215 ASANGFTV 222 (287)
T ss_dssp HHTTTCEE
T ss_pred HHhCCcEE
Confidence 99999977
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-18 Score=159.21 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=83.6
Q ss_pred CCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeEEEec-cc
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISI-AV 188 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~-~~ 188 (377)
++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++ +++++++|+.++++ +++||+|++. .+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS 160 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence 345999999999998642 3478999999999999999875 37899999999887 7899999976 55
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
++|++. ++...+|++++++|||||.+++.+++..
T Consensus 161 ~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 161 INELDE-ADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp HTTSCH-HHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred cccCCH-HHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 666653 3378999999999999999999987754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=145.92 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhCcccccccccc---hHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAK---WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~---~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
..+.+++.|....++........ ...++..+....++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++
T Consensus 13 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 92 (216)
T 3ofk_A 13 TYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQR 92 (216)
T ss_dssp HHHHHHHHHTSSSGGGTTTCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCcccccCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence 45667777765433222111111 222333334456678999999999997642 3346999999999999999987
Q ss_pred -----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 162 -----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 162 -----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++++++|+.+++ ++++||+|++..+++|+++.+....+++++.++|||||.+++.++.
T Consensus 93 ~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 93 TKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp TTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 4789999999987 6889999999999999998554578899999999999999998764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-18 Score=152.19 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=87.6
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEe-ccchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAIS-IAVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~-~~~l~h~~~ 194 (377)
++++.+|||||||+|.++.. ..+.+++|+|+|+.+++.++++ ++++..+|+.++++ +++||+|+| ..+++|+++
T Consensus 38 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 38 TPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred cCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 36778999999999997642 1223899999999999999987 68999999999877 789999996 459999987
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.+++..+|+++.++|||||.+++.++...
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 65588999999999999999999876543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=153.34 Aligned_cols=146 Identities=16% Similarity=0.242 Sum_probs=106.5
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++..+|+.++ +++||+|++..+
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~ 146 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGA 146 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESC
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcch
Confidence 56888999999999997632 2248999999999999999876 477999999876 789999999999
Q ss_pred hhhcCCh------HHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc-cch----HHHHhhhhCCCCCCcCCCCC
Q 017080 189 LHHLSTE------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT-PLT----QKYVEEWIGPGSPRVRSPSA 257 (377)
Q Consensus 189 l~h~~~~------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~----~~~~~~w~~~~~~~~~~~~~ 257 (377)
++|++++ +....+++++.++|||||.+++.++.............. ... ..+......+ ....
T Consensus 147 ~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~ 220 (302)
T 3hem_A 147 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP------GGRL 220 (302)
T ss_dssp GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT------TCCC
T ss_pred HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCC------CCCC
Confidence 9999763 335899999999999999999998775433211100000 000 0111111111 1235
Q ss_pred CCcccHHhHhhcCCCcc
Q 017080 258 RTLESIPETEDNGSEEQ 274 (377)
Q Consensus 258 ~~~~~l~~~l~~aGF~~ 274 (377)
.+.+++.++++++||++
T Consensus 221 ~s~~~~~~~l~~aGf~~ 237 (302)
T 3hem_A 221 PRISQVDYYSSNAGWKV 237 (302)
T ss_dssp CCHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHhCCcEE
Confidence 66889999999999976
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=141.74 Aligned_cols=124 Identities=17% Similarity=0.170 Sum_probs=100.8
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
+.++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ ++++..+| +++++++||+|++..+++|+++
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~- 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD- 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC-
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC-
Confidence 46778999999999997642 2224999999999999999987 78888888 6677899999999999999998
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+..+++++.++|||||.+++.++....... .......++.+++.++++ ||++
T Consensus 91 --~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 91 --KQHVISEVKRILKDDGRVIIIDWRKENTGI-----------------------GPPLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEECSSCCSS-----------------------SSCGGGCCCHHHHHHHTT--TEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCcccccc-----------------------CchHhhhcCHHHHHHHHh--CcEE
Confidence 889999999999999999999876542110 001123467889999999 9965
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-17 Score=149.68 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=101.0
Q ss_pred CCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc----C-------------------------------
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----G------------------------------- 162 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~----~------------------------------- 162 (377)
.++.+|||||||+|.++.. ..+. +|+|+|+|+.+++.++++ +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4678999999999997643 3344 999999999999999765 2
Q ss_pred -C-eEEEeeCCCCC-CCC---CceeEEEeccchhhcCCh-HHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhcccc
Q 017080 163 -H-EVLVADAVNLP-YRS---DFGDAAISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP 235 (377)
Q Consensus 163 -~-~~~~~d~~~~~-~~~---~~fD~V~~~~~l~h~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 235 (377)
+ .+.++|+.+.+ +++ ++||+|++..+++|+... .++..+|+++.++|||||++++.++.....
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~---------- 204 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY---------- 204 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE----------
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce----------
Confidence 5 88999998854 355 899999999999965432 238899999999999999999998543210
Q ss_pred chHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 236 LTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 236 ~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+.. .........++.+++.++|+++||++
T Consensus 205 ---------~~~-~~~~~~~~~~~~~~~~~~l~~aGf~~ 233 (265)
T 2i62_A 205 ---------YMI-GEQKFSSLPLGWETVRDAVEEAGYTI 233 (265)
T ss_dssp ---------EEE-TTEEEECCCCCHHHHHHHHHHTTCEE
T ss_pred ---------EEc-CCccccccccCHHHHHHHHHHCCCEE
Confidence 000 00011233567779999999999976
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=147.16 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=107.2
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHH------HHHHHHHc--------CCeEEEee---CCCCCCC
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPS------LIKICVDR--------GHEVLVAD---AVNLPYR 176 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~------~~~~a~~~--------~~~~~~~d---~~~~~~~ 176 (377)
.+.++.+|||||||+|.++. . .+..+|+|+|+|+. +++.++++ ++++..+| ...++++
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 119 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA 119 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence 35788999999999999753 2 36689999999997 88888765 47888888 4456677
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhc-cccchHHHHhhhhCCCCCCcCCC
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTK-WTPLTQKYVEEWIGPGSPRVRSP 255 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~ 255 (377)
+++||+|++..+++|+++ +..+++.+.++++|||.+++.++............ +........... .. .......
T Consensus 120 ~~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 194 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAI-AP-SDVANIR 194 (275)
T ss_dssp TCCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHH-SC-CTTCSCC
T ss_pred CCCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhc-cc-ccccccc
Confidence 899999999999999999 66777777777788999999988764332111110 000111111111 11 1122234
Q ss_pred CCCCcccHHhHhhcCCCcc
Q 017080 256 SARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 256 ~~~~~~~l~~~l~~aGF~~ 274 (377)
..++.+++.++++++||++
T Consensus 195 ~~~s~~~l~~~l~~aGf~~ 213 (275)
T 3bkx_A 195 TLITPDTLAQIAHDNTWTY 213 (275)
T ss_dssp CCCCHHHHHHHHHHHTCEE
T ss_pred ccCCHHHHHHHHHHCCCee
Confidence 5788999999999999988
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-17 Score=144.11 Aligned_cols=117 Identities=20% Similarity=0.235 Sum_probs=98.4
Q ss_pred HHHHHHhCCCCCCEEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+...+....++.+|||||||+|.++... ..+++|+|+|+. ++.+.++|+.++++++++||+|++..++||
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l-~~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 127 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSI-RNPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG 127 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHC-CSCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCCS
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHh-hccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhccc
Confidence 45666666677889999999999987544 379999999998 588999999999888899999999999975
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
.+ +..+++++.++|+|||.+++.++... ..+.+++.++++++|
T Consensus 128 -~~---~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------------~~~~~~~~~~l~~~G 170 (215)
T 2zfu_A 128 -TN---IRDFLEEANRVLKPGGLLKVAEVSSR---------------------------------FEDVRTFLRAVTKLG 170 (215)
T ss_dssp -SC---HHHHHHHHHHHEEEEEEEEEEECGGG---------------------------------CSCHHHHHHHHHHTT
T ss_pred -cC---HHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------------CCCHHHHHHHHHHCC
Confidence 66 88999999999999999999875421 115678999999999
Q ss_pred Ccc
Q 017080 272 EEQ 274 (377)
Q Consensus 272 F~~ 274 (377)
|++
T Consensus 171 f~~ 173 (215)
T 2zfu_A 171 FKI 173 (215)
T ss_dssp EEE
T ss_pred CEE
Confidence 966
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=139.82 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHhhCcccccccccchHHHHHHHh-CCCCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHc
Q 017080 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~ 161 (377)
..++++.+.|...........+.....+...+. .+.++.+|||+|||+|.++.. ..+ .+|+|+|+|+.+++.++++
T Consensus 5 ~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~ 84 (215)
T 2pxx_A 5 REVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQAC 84 (215)
T ss_dssp GCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Confidence 346778888766542211223334455555554 357788999999999997532 112 2899999999999999986
Q ss_pred -----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC------------hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 -----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST------------ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 -----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~------------~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++.+.++|+.++++++++||+|++..+++|+.. ..++..+++++.++|||||.+++.++..
T Consensus 85 ~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 85 YAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp TTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 589999999998888899999999999988761 2237899999999999999999998764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=149.96 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=101.7
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----------------------------------
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----------------------------------- 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~----------------------------------- 161 (377)
.++.+|||||||+|.++. ..++.+|+|+|+|+.+++.|+++
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 367899999999999753 36778999999999999999875
Q ss_pred ------------------------------CCeEEEeeCCCCC-----CCCCceeEEEeccchhhcC---ChHHHHHHHH
Q 017080 162 ------------------------------GHEVLVADAVNLP-----YRSDFGDAAISIAVLHHLS---TESRRKKAIE 203 (377)
Q Consensus 162 ------------------------------~~~~~~~d~~~~~-----~~~~~fD~V~~~~~l~h~~---~~~~~~~~l~ 203 (377)
++.|.++|+...+ +.+++||+|+|..+++|+. +.+.+.++++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 4778888887644 5678999999999998884 3333889999
Q ss_pred HHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc--CCCccc
Q 017080 204 ELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN--GSEEQG 275 (377)
Q Consensus 204 ~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~--aGF~~~ 275 (377)
+++++|||||+|++....... . .............+. ...+.++++.++|.+ +||+..
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~----y-~~~~~~~~~~~~~~~---------~~~~~p~~~~~~L~~~~~GF~~~ 264 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSS----Y-GKRKTLTETIYKNYY---------RIQLKPEQFSSYLTSPDVGFSSY 264 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHH----H-HTTTTSCHHHHHHHH---------HCCCCGGGHHHHHTSTTTCCCEE
T ss_pred HHHHHhCCCcEEEEecCCchh----h-hhhhcccHHHHhhhh---------cEEEcHHHHHHHHHhcCCCceEE
Confidence 999999999999987533211 0 000011111111111 112346889999999 999763
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-17 Score=145.85 Aligned_cols=154 Identities=18% Similarity=0.108 Sum_probs=106.8
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCC-----Ccee
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRS-----DFGD 181 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~-----~~fD 181 (377)
+..++..+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++++|+.+++... .+||
T Consensus 47 ~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp HHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred HHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCcc
Confidence 334445567888999999999997642 2233899999999999999886 6889999998865322 3499
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccch--hhhhccccchHHHHhhhhCCCCCCcCCCCCCC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK--SLVTKWTPLTQKYVEEWIGPGSPRVRSPSART 259 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 259 (377)
+|++..+++|++..+ +..+++++.++|||||.+++.++....... .+........ ......+.. ......++
T Consensus 127 ~v~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~ 200 (245)
T 3ggd_A 127 NIYMRTGFHHIPVEK-RELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLP-YELLLVMEH----GIRPGIFT 200 (245)
T ss_dssp EEEEESSSTTSCGGG-HHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCC-HHHHHHHTT----TCCCCCCC
T ss_pred EEEEcchhhcCCHHH-HHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCc-hhhhhcccc----CCCCCccC
Confidence 999999999998433 889999999999999999999886542110 0000000000 011111111 11123467
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.+++.+++ +||++
T Consensus 201 ~~~~~~~~--aGf~~ 213 (245)
T 3ggd_A 201 AEDIELYF--PDFEI 213 (245)
T ss_dssp HHHHHHHC--TTEEE
T ss_pred HHHHHHHh--CCCEE
Confidence 88999999 99987
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=136.70 Aligned_cols=121 Identities=23% Similarity=0.309 Sum_probs=101.8
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEec-cchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISI-AVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~-~~l~h~~~ 194 (377)
++++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ ++.+..+|+.++++++++||+|++. .+++|++.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh
Confidence 46788999999999997532 2367999999999999999987 6899999999988888999999998 78888865
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
++ ...+++++.++|+|||.+++...... .++.+++.++++++||.+
T Consensus 124 ~~-~~~~l~~~~~~l~~~G~l~~~~~~~~---------------------------------~~~~~~~~~~l~~~Gf~~ 169 (195)
T 3cgg_A 124 DG-REPALANIHRALGADGRAVIGFGAGR---------------------------------GWVFGDFLEVAERVGLEL 169 (195)
T ss_dssp HH-HHHHHHHHHHHEEEEEEEEEEEETTS---------------------------------SCCHHHHHHHHHHHTEEE
T ss_pred HH-HHHHHHHHHHHhCCCCEEEEEeCCCC---------------------------------CcCHHHHHHHHHHcCCEE
Confidence 33 78999999999999999999864321 145677889999999976
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=140.32 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=104.2
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
+..++..++++ +|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++.+.++|+.++++++++||+|+
T Consensus 21 l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (202)
T 2kw5_A 21 LVSVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIV 99 (202)
T ss_dssp HHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEE
T ss_pred HHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEE
Confidence 33444456677 999999999997642 3467999999999999999876 57889999999888889999999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHH
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIP 264 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 264 (377)
+. +.|++. +++..+++++.++|||||.+++.++....... .. .........++.+++.
T Consensus 100 ~~--~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~~l~ 157 (202)
T 2kw5_A 100 SI--FCHLPS-SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY------------------NT-GGPKDLDLLPKLETLQ 157 (202)
T ss_dssp EE--CCCCCH-HHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG------------------TS-CCSSSGGGCCCHHHHH
T ss_pred EE--hhcCCH-HHHHHHHHHHHHhcCCCcEEEEEEeccccccC------------------CC-CCCCcceeecCHHHHH
Confidence 95 345532 33889999999999999999999876542110 00 0111224568889999
Q ss_pred hHhhcCCCcc
Q 017080 265 ETEDNGSEEQ 274 (377)
Q Consensus 265 ~~l~~aGF~~ 274 (377)
++++ ||++
T Consensus 158 ~~l~--Gf~v 165 (202)
T 2kw5_A 158 SELP--SLNW 165 (202)
T ss_dssp HHCS--SSCE
T ss_pred HHhc--CceE
Confidence 9999 9977
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-16 Score=135.02 Aligned_cols=137 Identities=21% Similarity=0.171 Sum_probs=105.0
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCcee
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD 181 (377)
..+...+.. .++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ ++++..+|+.++++ +++||
T Consensus 22 ~~l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D 99 (199)
T 2xvm_A 22 SEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYD 99 (199)
T ss_dssp HHHHHHTTT-SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEE
T ss_pred HHHHHHhhc-cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCce
Confidence 345555543 4567999999999997532 2367999999999999998875 57899999999887 88999
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcc
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLE 261 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 261 (377)
+|++..+++|++.++ +..+++++.++|||||.+++.++..... + .........++.+
T Consensus 100 ~v~~~~~l~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~~------------------~----~~~~~~~~~~~~~ 156 (199)
T 2xvm_A 100 FILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVAAMDTAD------------------Y----PCTVGFPFAFKEG 156 (199)
T ss_dssp EEEEESCGGGSCGGG-HHHHHHHHHHTEEEEEEEEEEEEBCCSS------------------S----CCCSCCSCCBCTT
T ss_pred EEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEEeeccCC------------------c----CCCCCCCCccCHH
Confidence 999999999998433 8899999999999999988876543211 0 0011223456888
Q ss_pred cHHhHhhcCCCcc
Q 017080 262 SIPETEDNGSEEQ 274 (377)
Q Consensus 262 ~l~~~l~~aGF~~ 274 (377)
++.+++++ |++
T Consensus 157 ~l~~~~~~--f~~ 167 (199)
T 2xvm_A 157 ELRRYYEG--WER 167 (199)
T ss_dssp HHHHHTTT--SEE
T ss_pred HHHHHhcC--CeE
Confidence 99999986 855
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=147.48 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=88.4
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC---CCCCceeEE
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP---YRSDFGDAA 183 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~---~~~~~fD~V 183 (377)
..++.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++.+..+|+..++ +++++||+|
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence 35678999999999997642 3366999999999999999763 5778999998877 788999999
Q ss_pred Eec-cchhhcCC----hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 184 ISI-AVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 184 ~~~-~~l~h~~~----~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++. .+++|+++ .+++..++++++++|||||++++..++.
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 998 89999998 4448899999999999999999998653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-17 Score=143.88 Aligned_cols=104 Identities=25% Similarity=0.339 Sum_probs=86.1
Q ss_pred hCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
..++++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ +++++.+|+.++++++++||+|++..++
T Consensus 34 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 34 KYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 113 (227)
T ss_dssp HSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred HhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCch
Confidence 3456688999999999997532 2234999999999999998875 5899999999988888999999999995
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++....+ +..+++++.++|||||.+++.+++.
T Consensus 114 ~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 114 VHFEPLE-LNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp GGCCHHH-HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred HhCCHHH-HHHHHHHHHHHcCCCcEEEEEecCh
Confidence 5443322 7899999999999999999998753
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=148.36 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=105.7
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. ..+++|+|+|+|+.+++.++++ ++++..+|+.+++ ++||+|++..+
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~ 164 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEA 164 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeCh
Confidence 46788999999999997532 2267999999999999999876 3788999998774 78999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccc--hHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPL--TQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
++|+++++ +..+++++.++|||||.+++.++........ .....+. .......|.... ........+.+++.++
T Consensus 165 l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~ 240 (318)
T 2fk8_A 165 FEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSYHPYEM-AARGKKLSFETARFIKFIVTE--IFPGGRLPSTEMMVEH 240 (318)
T ss_dssp GGGTCGGG-HHHHHHHHHHHSCTTCEEEEEEEECCCHHHH-HTTCHHHHHHHHHHHHHHHHH--TSTTCCCCCHHHHHHH
T ss_pred HHhcCHHH-HHHHHHHHHHhcCCCcEEEEEEeccCCchhh-hhccccccccccchhhHHHHh--cCCCCcCCCHHHHHHH
Confidence 99996433 8999999999999999999998875432110 0000000 000011121100 0011244588999999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
++++||++
T Consensus 241 l~~aGf~~ 248 (318)
T 2fk8_A 241 GEKAGFTV 248 (318)
T ss_dssp HHHTTCBC
T ss_pred HHhCCCEE
Confidence 99999976
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-16 Score=142.06 Aligned_cols=169 Identities=21% Similarity=0.175 Sum_probs=114.5
Q ss_pred HHHHHhhCcccccccc---cchHHHHHHHhCCCCCCEEEEECCcc---Ccccc----cCCCceEEEEeCCHHHHHHHHHc
Q 017080 92 HRVYDAIAPHFSSTRF---AKWPKVATFLNSLPSGSLVLDAGCGN---GKYLG----LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 92 ~~~y~~~a~~y~~~~~---~~~~~~~~~l~~~~~~~~vLDiGcG~---G~~~~----~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+.|.+..+.|..... ....++...+.......+|||||||+ |.++. ..|+.+|+|+|+|+.|++.|+++
T Consensus 44 ~~~~~~~~p~~~~~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~ 123 (274)
T 2qe6_A 44 ADYACKHIPGLKESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRAL 123 (274)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHh
Confidence 3446666665543111 11123333343223447999999999 98643 36889999999999999999876
Q ss_pred -----CCeEEEeeCCCCC-----------CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 162 -----GHEVLVADAVNLP-----------YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 162 -----~~~~~~~d~~~~~-----------~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
+++++.+|+.+.+ ++.++||+|++..++||+++.+ +..+|++++++|||||+|++.++....
T Consensus 124 ~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~-~~~~l~~~~~~L~pGG~l~i~~~~~~~- 201 (274)
T 2qe6_A 124 LAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDV-VDRVVGAYRDALAPGSYLFMTSLVDTG- 201 (274)
T ss_dssp HTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTT-HHHHHHHHHHHSCTTCEEEEEEEBCSS-
T ss_pred cCCCCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHH-HHHHHHHHHHhCCCCcEEEEEEecCcc-
Confidence 5789999997631 2335899999999999999864 789999999999999999999876532
Q ss_pred chhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcccc
Q 017080 226 DKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGK 276 (377)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~~~ 276 (377)
... .. .....+... . .....++.+++.+++ +||++.+
T Consensus 202 ~~~-~~---~~~~~~~~~-~-------~~~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 202 LPA-QQ---KLARITREN-L-------GEGWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp CHH-HH---HHHHHHHHH-H-------SCCCCBCHHHHHHTT--TTCEECT
T ss_pred hHH-HH---HHHHHHHhc-C-------CCCccCCHHHHHHHh--CCCeEcc
Confidence 111 01 011111110 0 013457889999999 5996633
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6e-16 Score=149.12 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=106.4
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC--CCCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL--PYRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~--~~~~~~fD~V~~~ 186 (377)
.++.+|||||||+|.++. ..|+.+++++|+ +.+++.|+++ +++++.+|+.+. |++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 356799999999999763 378999999999 9999999875 488999999885 465 789999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
.++||+++++ ...+|++++++|||||+++|.++...................++ +.. .......++.++|.++
T Consensus 256 ~vlh~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~t~~e~~~l 328 (363)
T 3dp7_A 256 QFLDCFSEEE-VISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF--TAM----ANGNSKMFHSDDLIRC 328 (363)
T ss_dssp SCSTTSCHHH-HHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH--HHS----SCSSCCSCCHHHHHHH
T ss_pred chhhhCCHHH-HHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH--Hhh----hCCCCcccCHHHHHHH
Confidence 9999998854 67899999999999999999986654321110000000000000 001 1112345688999999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
|+++||++
T Consensus 329 l~~AGf~~ 336 (363)
T 3dp7_A 329 IENAGLEV 336 (363)
T ss_dssp HHTTTEEE
T ss_pred HHHcCCeE
Confidence 99999966
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-16 Score=141.77 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=86.5
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcC-CeEEEeeCCCCCCCCCceeEEEeccchhhc-CCh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISIAVLHHL-STE 195 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~-~~~ 195 (377)
++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++. ..+.++|+.++++++++||+|++..++.|+ ++
T Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred cCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 34778999999999997642 34679999999999999999873 248999999999889999999999877776 66
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+..+|+++.++|||||.+++.+++.
T Consensus 131 --~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 131 --KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred --HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 8899999999999999999998764
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.4e-16 Score=140.90 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=93.8
Q ss_pred HHHHhhCccccccccc----chHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcC-CeE
Q 017080 93 RVYDAIAPHFSSTRFA----KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG-HEV 165 (377)
Q Consensus 93 ~~y~~~a~~y~~~~~~----~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~-~~~ 165 (377)
+.|+..+..|...... .+.+.......+.++.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++. ..+
T Consensus 12 ~~wd~~a~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~ 91 (261)
T 3iv6_A 12 EAWELIGNQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC 91 (261)
T ss_dssp HHHHTTTTHHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC
T ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc
Confidence 5577777766543322 2322222223467889999999999997642 35779999999999999999872 124
Q ss_pred EEeeCCCCCC-----CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 166 LVADAVNLPY-----RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 166 ~~~d~~~~~~-----~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+..++.+++. .+++||+|++..+++|+..++ ...+++++.++| |||.++++...
T Consensus 92 v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~-~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 92 VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEE-ARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHH-HHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ceeeeeecccccccccCCCccEEEEhhhhHhCCHHH-HHHHHHHHHHhC-cCcEEEEEecc
Confidence 5566655443 257899999999999997654 788999999999 99999998754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-16 Score=147.04 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=81.3
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc----C---------CeEEEeeC------CCC--CCC
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR----G---------HEVLVADA------VNL--PYR 176 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~----~---------~~~~~~d~------~~~--~~~ 176 (377)
+++.+|||||||+|..+. ...+.+|+|+|+|+.|++.|+++ + ++|.+.|+ +++ +++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 457899999999997543 24457999999999999999876 2 34777877 322 356
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+++||+|+|..++||+-+.++...+|++++++|||||++++.+++.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 7899999999999986432236899999999999999999998753
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=138.91 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=89.9
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeE
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
..+...+... ++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++++|+.++++ +++||+
T Consensus 110 ~~~~~~~~~~-~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~ 187 (286)
T 3m70_A 110 GDVVDAAKII-SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDF 187 (286)
T ss_dssp HHHHHHHHHS-CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEE
T ss_pred HHHHHHhhcc-CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccE
Confidence 3444555444 678999999999997642 3367999999999999998876 57899999999876 889999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|++..+++|++++. ...+++++.++|||||.+++....
T Consensus 188 i~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 188 IVSTVVFMFLNRER-VPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp EEECSSGGGSCGGG-HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEccchhhCCHHH-HHHHHHHHHHhcCCCcEEEEEEec
Confidence 99999999997654 779999999999999998887654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=143.71 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=103.1
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.++.+|||||||+|.++. ..|+.+++++|+ +.+++.++++ ++++..+|+. .+++. +||+|++..+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 346799999999999753 478899999999 9999999864 4889999997 34545 8999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhh
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETED 268 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~ 268 (377)
+||+++++ ..++|++++++|||||+++|.++..... .. ..+ ......... .....+.++|.++++
T Consensus 245 lh~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~--~~~---~d~~~~~~~--------~~~~~t~~e~~~ll~ 309 (332)
T 3i53_A 245 LHDWDDLS-AVAILRRCAEAAGSGGVVLVIEAVAGDE-HA--GTG---MDLRMLTYF--------GGKERSLAELGELAA 309 (332)
T ss_dssp GGGSCHHH-HHHHHHHHHHHHTTTCEEEEEECCCC----C--CHH---HHHHHHHHH--------SCCCCCHHHHHHHHH
T ss_pred hccCCHHH-HHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc--cHH---HHHHHHhhC--------CCCCCCHHHHHHHHH
Confidence 99999854 6899999999999999999998765432 10 000 111110011 134567899999999
Q ss_pred cCCCcc
Q 017080 269 NGSEEQ 274 (377)
Q Consensus 269 ~aGF~~ 274 (377)
++||++
T Consensus 310 ~aGf~~ 315 (332)
T 3i53_A 310 QAGLAV 315 (332)
T ss_dssp HTTEEE
T ss_pred HCCCEE
Confidence 999966
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=143.59 Aligned_cols=143 Identities=13% Similarity=0.144 Sum_probs=106.9
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
+.++.+|||||||+|.++. ..|+.+++++|+ +.+++.++++ +++++.+|+.+.++++. |+|++..
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~ 264 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR 264 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence 4677899999999999753 378889999999 9999999865 38899999998776544 9999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
++||+++++ ..++|++++++|||||++++.++....... +....+. .+............+++.++|.+++
T Consensus 265 vlh~~~d~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-------~~~~~~~-~~~~~~~~g~~~~~~~t~~e~~~ll 335 (359)
T 1x19_A 265 ILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVIDDPEN-------PNFDYLS-HYILGAGMPFSVLGFKEQARYKEIL 335 (359)
T ss_dssp CGGGSCHHH-HHHHHHHHHTTCCTTCEEEEEEECCCCTTS-------CCHHHHH-HHGGGGGSSCCCCCCCCGGGHHHHH
T ss_pred hhccCCHHH-HHHHHHHHHHhcCCCCEEEEEecccCCCCC-------chHHHHH-HHHHhcCCCCcccCCCCHHHHHHHH
Confidence 999998754 789999999999999999998876543211 0111111 1111000011123458899999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 336 ~~aGf~~ 342 (359)
T 1x19_A 336 ESLGYKD 342 (359)
T ss_dssp HHHTCEE
T ss_pred HHCCCce
Confidence 9999966
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=146.08 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=104.6
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
+.+..+|||||||+|.++. .+|+.+++++|+ +.+++.+++. +++++.+|+.+ +++.+ |+|++..++||+++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d 274 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSD 274 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCH
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCH
Confidence 5567899999999999753 479999999999 8898887765 69999999988 76654 99999999999987
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
++ ..++|++++++|||||+++|.+........................... ......+.++|.++++++||++
T Consensus 275 ~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~------~~g~~rt~~e~~~ll~~AGF~~ 347 (364)
T 3p9c_A 275 QH-CATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHN------PGGRERYEREFQALARGAGFTG 347 (364)
T ss_dssp HH-HHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHC------SSCCCCBHHHHHHHHHHTTCCE
T ss_pred HH-HHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcc------cCCccCCHHHHHHHHHHCCCce
Confidence 54 7899999999999999999998765432111000000000000000000 0123457789999999999966
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=143.39 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=106.3
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.++.+|||||||+|.++. ..|+.+++++|+| .+++.++++ +++++.+|+.+.+++++ ||+|++..+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 567899999999999753 3688899999999 999998875 48899999988776554 999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhh
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETED 268 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~ 268 (377)
+||+++++ ...+|++++++|||||++++.++........ +........+... .......++.+++.++++
T Consensus 242 l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~t~~~~~~ll~ 311 (335)
T 2r3s_A 242 LHHFDVAT-CEQLLRKIKTALAVEGKVIVFDFIPNSDRIT------PPDAAAFSLVMLA---TTPNGDAYTFAEYESMFS 311 (335)
T ss_dssp GGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCCCTTSSC------SHHHHHHHHHHHH---HSSSCCCCCHHHHHHHHH
T ss_pred hccCCHHH-HHHHHHHHHHhCCCCcEEEEEeecCCCCcCC------chHHHHHHHHHHe---eCCCCCcCCHHHHHHHHH
Confidence 99997644 6899999999999999999998765432110 0011111111000 001235678899999999
Q ss_pred cCCCcc
Q 017080 269 NGSEEQ 274 (377)
Q Consensus 269 ~aGF~~ 274 (377)
++||++
T Consensus 312 ~aGf~~ 317 (335)
T 2r3s_A 312 NAGFSH 317 (335)
T ss_dssp HTTCSE
T ss_pred HCCCCe
Confidence 999966
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-16 Score=144.64 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=80.5
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC--CCCCCceeEEEe-cc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL--PYRSDFGDAAIS-IA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~--~~~~~~fD~V~~-~~ 187 (377)
..++.+|||||||+|.++.. ....+|+|+|+|+.|++.|+++ ++.++++|+.++ ++++++||+|++ ..
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 35778999999999997642 3344999999999999999886 377899999887 788999999999 55
Q ss_pred ch-hhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 188 VL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 188 ~l-~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+ .+......+..++++++++|||||++++.++.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 43 11222222668899999999999999987643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=146.65 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=104.1
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
+.++.+|||||||+|.++. .+|+.+++++|+ +.+++.+++. +++++.+|+.+ +++++ |+|++..++||+++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence 4567899999999999753 479999999999 9999888765 78999999987 66654 99999999999998
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhh-hhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL-VTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEE 273 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~ 273 (377)
++ ..++|++++++|||||+++|.++......... ..............+. ......+.++|.++++++||+
T Consensus 277 ~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~g~~rt~~e~~~ll~~AGF~ 348 (368)
T 3reo_A 277 EH-CLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN-------PGGKERTEKEFQALAMASGFR 348 (368)
T ss_dssp HH-HHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS-------SBCCCCCHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc-------CCCccCCHHHHHHHHHHCCCe
Confidence 54 67999999999999999999987654321110 0000000000000000 012345788999999999996
Q ss_pred c
Q 017080 274 Q 274 (377)
Q Consensus 274 ~ 274 (377)
+
T Consensus 349 ~ 349 (368)
T 3reo_A 349 G 349 (368)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=143.85 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=105.3
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
..++.+|||||||+|.++. ..|+.+++++|+ +.+++.++++ ++++..+|+. .+++. .||+|++..
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKH 276 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhh
Confidence 4567899999999999753 478999999999 9999999864 5899999998 45555 899999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
++||+++++ ..++|++++++|||||+++|.++......... ..+. ....... ......+.++|.+++
T Consensus 277 vlh~~~d~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~---d~~~~~~--------~~g~~~t~~e~~~ll 343 (369)
T 3gwz_A 277 VLHDWDDDD-VVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFV---DLLLLVL--------VGGAERSESEFAALL 343 (369)
T ss_dssp CGGGSCHHH-HHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHH---HHHHHHH--------HSCCCBCHHHHHHHH
T ss_pred hhccCCHHH-HHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHh---hHHHHhh--------cCCccCCHHHHHHHH
Confidence 999998844 45899999999999999999987654332111 1110 0000001 113456789999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 344 ~~aGf~~ 350 (369)
T 3gwz_A 344 EKSGLRV 350 (369)
T ss_dssp HTTTEEE
T ss_pred HHCCCeE
Confidence 9999966
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-15 Score=151.31 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=86.6
Q ss_pred CCCCEEEEECCccCcccc----cC-CCceEEEEeCCHHHHHHHHHc-------------CCeEEEeeCCCCCCCCCceeE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~-~~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
.++.+|||||||+|.++. .. +..+|+|+|+|+.|++.|+++ +++++++|+.++++++++||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 377899999999999763 23 447999999999999999871 478999999999998999999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
|++..+++|+++.. ...+++++.++|||| .+++.+++.
T Consensus 800 VV~~eVLeHL~dp~-l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 800 GTCLEVIEHMEEDQ-ACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEESCGGGSCHHH-HHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEEeCchhhCChHH-HHHHHHHHHHHcCCC-EEEEEecCc
Confidence 99999999999844 457999999999999 888888764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-15 Score=142.89 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=101.7
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
+.++.+|||||||+|.++. ..|+.+++++|+ +.+++.++++ +++++.+|+.+ +++. .||+|++..
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF 256 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence 4567899999999999753 378889999999 9999999875 58899999876 3444 499999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc--CCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW--AVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 265 (377)
++||+++.+ ...+|++++++|||||++++.++ ............ ........+. ....++.+++.+
T Consensus 257 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~ 324 (374)
T 1qzz_A 257 VLLNWSDED-ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFST---LLDLRMLTFM--------GGRVRTRDEVVD 324 (374)
T ss_dssp CGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCH-------HHHHH---HHHHHHHHHH--------SCCCCCHHHHHH
T ss_pred cccCCCHHH-HHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhh---hcchHHHHhC--------CCcCCCHHHHHH
Confidence 999998743 46999999999999999999987 432211111110 1111111111 134578899999
Q ss_pred HhhcCCCcc
Q 017080 266 TEDNGSEEQ 274 (377)
Q Consensus 266 ~l~~aGF~~ 274 (377)
+++++||++
T Consensus 325 ll~~aGf~~ 333 (374)
T 1qzz_A 325 LAGSAGLAL 333 (374)
T ss_dssp HHHTTTEEE
T ss_pred HHHHCCCce
Confidence 999999966
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=134.04 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=91.0
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeC-CCCCCC-CCceeEEEeccchhhcC
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADA-VNLPYR-SDFGDAAISIAVLHHLS 193 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~-~~~~~~-~~~fD~V~~~~~l~h~~ 193 (377)
++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++++|+ ..+|++ +++||+|++. .
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~ 119 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------R 119 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------S
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------C
Confidence 56789999999999997632 2367999999999999999987 799999999 568887 8999999997 3
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCc
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEE 273 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~ 273 (377)
+ +..+++++.++|||||.++.. ....+.+.+.++++++||.
T Consensus 120 ~---~~~~l~~~~~~LkpgG~l~~~------------------------------------~~~~~~~~~~~~l~~~Gf~ 160 (226)
T 3m33_A 120 G---PTSVILRLPELAAPDAHFLYV------------------------------------GPRLNVPEVPERLAAVGWD 160 (226)
T ss_dssp C---CSGGGGGHHHHEEEEEEEEEE------------------------------------ESSSCCTHHHHHHHHTTCE
T ss_pred C---HHHHHHHHHHHcCCCcEEEEe------------------------------------CCcCCHHHHHHHHHHCCCe
Confidence 4 678999999999999999811 0123456788999999997
Q ss_pred c
Q 017080 274 Q 274 (377)
Q Consensus 274 ~ 274 (377)
+
T Consensus 161 ~ 161 (226)
T 3m33_A 161 I 161 (226)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=142.53 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=104.4
Q ss_pred CCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC-CCCCceeEEEeccch
Q 017080 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRSDFGDAAISIAVL 189 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~~fD~V~~~~~l 189 (377)
+.+|||||||+|.++. ..|+.+++++|+ +.+++.++++ +++++.+|+.+.+ +..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 7899999999999753 478899999999 8898888764 4889999998865 235679999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
||+++++ ...+|++++++|||||++++.++........ +....+...+... .......++.++|.+++++
T Consensus 259 h~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~t~~e~~~ll~~ 328 (352)
T 3mcz_A 259 HYFDARE-AREVIGHAAGLVKPGGALLILTMTMNDDRVT------PALSADFSLHMMV---NTNHGELHPTPWIAGVVRD 328 (352)
T ss_dssp GGSCHHH-HHHHHHHHHHTEEEEEEEEEEEECCCTTSSS------SHHHHHHHHHHHH---HSTTCCCCCHHHHHHHHHH
T ss_pred ccCCHHH-HHHHHHHHHHHcCCCCEEEEEEeccCCCCCC------CchHHHhhHHHHh---hCCCCCcCCHHHHHHHHHH
Confidence 9998744 6899999999999999999998765432110 0011111111000 0011234678999999999
Q ss_pred CCCccc
Q 017080 270 GSEEQG 275 (377)
Q Consensus 270 aGF~~~ 275 (377)
+||++.
T Consensus 329 aGf~~~ 334 (352)
T 3mcz_A 329 AGLAVG 334 (352)
T ss_dssp TTCEEE
T ss_pred CCCcee
Confidence 999763
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=130.75 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=93.4
Q ss_pred CCCCCCEEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCC---CCCceeEEEeccchhhc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPY---RSDFGDAAISIAVLHHL 192 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~---~~~~fD~V~~~~~l~h~ 192 (377)
.+.+|.+|||||||+ +++|+|+.|++.|+++ ++++.++|+.++++ ++++||+|++..++||+
T Consensus 9 g~~~g~~vL~~~~g~------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~ 76 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGST 76 (176)
T ss_dssp TCCTTSEEEEEECTT------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCC
T ss_pred CCCCCCEEEEecCCc------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhc
Confidence 367899999999996 2399999999999987 58999999999887 78999999999999999
Q ss_pred -CChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 193 -STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 193 -~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
++ +..++++++|+|||||++++..+..... . . .....+.+++.++|+++|
T Consensus 77 ~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~--------------------~--~----~~~~~~~~~~~~~l~~aG 127 (176)
T 2ld4_A 77 TLH---SAEILAEIARILRPGGCLFLKEPVETAV--------------------D--N----NSKVKTASKLCSALTLSG 127 (176)
T ss_dssp CCC---CHHHHHHHHHHEEEEEEEEEEEEEESSS--------------------C--S----SSSSCCHHHHHHHHHHTT
T ss_pred ccC---HHHHHHHHHHHCCCCEEEEEEccccccc--------------------c--c----ccccCCHHHHHHHHHHCC
Confidence 77 7899999999999999999965421100 0 0 111235688999999999
Q ss_pred Ccc
Q 017080 272 EEQ 274 (377)
Q Consensus 272 F~~ 274 (377)
| +
T Consensus 128 f-i 129 (176)
T 2ld4_A 128 L-V 129 (176)
T ss_dssp C-E
T ss_pred C-c
Confidence 9 5
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-15 Score=137.83 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=86.1
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCCC----CC--
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLP----YR-- 176 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~~~----~~-- 176 (377)
++++.+|||||||+|.++.. .+..+++|+|+|+.|++.++++ ++.++++|+..++ ++
T Consensus 32 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 32 KKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp C--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred cCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 35778999999999997642 4677999999999999998875 3688999999875 53
Q ss_pred CCceeEEEeccchhhc-CChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 177 SDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~-~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+++||+|++..++||+ .+.+++..+|+++.++|||||.+++.+++.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 4599999999999998 665557899999999999999999998764
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.3e-15 Score=133.34 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=81.5
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEecc-chhh
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA-VLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~-~l~h 191 (377)
.++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ ++.++++|+.+++++ ++||+|++.. .++|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence 4678999999999997642 3477999999999999999875 588999999988764 6899999975 4555
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++ .+++..+++++.++|||||.+++..++
T Consensus 119 ~~-~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 119 FD-EEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CC-HHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 54 334889999999999999999987654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=134.58 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=83.4
Q ss_pred HHhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
.+..+.++.+|||||||+|.++ ...++++|+|+|+|+.|++.|+++ +++++++|+.+++ +++||+|+
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~ 193 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLM 193 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEE
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEE
Confidence 3567889999999999998653 336789999999999999999986 5789999998875 78999999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+... +++ +.++++++.++|||||++++...
T Consensus 194 ~~a~---~~d---~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 194 VAAL---AEP---KRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ECTT---CSC---HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ECCC---ccC---HHHHHHHHHHHcCCCcEEEEEcC
Confidence 8654 466 88999999999999999999864
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-15 Score=143.70 Aligned_cols=143 Identities=19% Similarity=0.177 Sum_probs=102.7
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
++++.+|||||||+|.++. ..|+.+++++|+ +.+++.+++. +++++.+|+.+ +++. ||+|++..++||+++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD 282 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH
Confidence 4567899999999999753 378889999999 9999888764 68999999987 6654 999999999999998
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.+ ...+|++++++|||||+++|.++........... + ........+... ......++.++|.++++++||++
T Consensus 283 ~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-~--~~~~~~d~~~~~----~~~~~~~t~~e~~~ll~~aGf~~ 354 (372)
T 1fp1_D 283 EK-CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEE-S--KLVSTLDNLMFI----TVGGRERTEKQYEKLSKLSGFSK 354 (372)
T ss_dssp HH-HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHH-H--HHHHHHHHHHHH----HHSCCCEEHHHHHHHHHHTTCSE
T ss_pred HH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCccchH-H--HHHHHhhHHHHh----ccCCccCCHHHHHHHHHHCCCce
Confidence 43 4599999999999999999997654322110000 0 000111111000 00123457889999999999966
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=136.43 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=78.7
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC--CCCCCceeEEEe----
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL--PYRSDFGDAAIS---- 185 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~--~~~~~~fD~V~~---- 185 (377)
.+|.+|||||||+|..+.. ....+|+|||+|+.+++.|+++ +++++.+|+..+ ++++++||.|+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence 5788999999999987542 3346899999999999999986 366788887653 477899999974
Q ss_pred -ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 -IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 -~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...++|+++ +..++++++|+|||||++.+..
T Consensus 139 ~~~~~~~~~~---~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 139 LSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECC
T ss_pred cccchhhhcc---hhhhhhhhhheeCCCCEEEEEe
Confidence 556677777 8899999999999999998754
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-15 Score=139.23 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=102.9
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
+.+ .+|||||||+|.++. ..|+.+++++|+ +.+++.++++ +++++.+|+.+ +++ ++||+|++..
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR 241 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch
Confidence 345 899999999999653 378889999999 9999988875 58899999987 554 6799999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
++||+++++ ...++++++++|||||++++.+.............+ .......+.. ....+.++|.+++
T Consensus 242 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~t~~e~~~ll 309 (334)
T 2ip2_A 242 IIGDLDEAA-SLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVL---WDVHLFMACA--------GRHRTTEEVVDLL 309 (334)
T ss_dssp CGGGCCHHH-HHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHH---HHHHHHHHHS--------CCCCBHHHHHHHH
T ss_pred hccCCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHH---hhhHhHhhCC--------CcCCCHHHHHHHH
Confidence 999998744 569999999999999999999876432211100000 0100101111 2335789999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 310 ~~aGf~~ 316 (334)
T 2ip2_A 310 GRGGFAV 316 (334)
T ss_dssp HHTTEEE
T ss_pred HHCCCce
Confidence 9999966
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=139.32 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=103.2
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
+.++.+|||||||+|.++. ..++.+++++|+ +.+++.++++ +++++.+|+.+ +++. .||+|++..
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF 257 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence 4567899999999999753 378889999999 9999988875 58899999876 3444 499999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC-CCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA-VEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
++||+++++ ...++++++++|||||++++.++. ....... .+..........+. ....++.++|.++
T Consensus 258 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~--------~~~~~t~~e~~~l 325 (360)
T 1tw3_A 258 VLLNWPDHD-AVRILTRCAEALEPGGRILIHERDDLHENSFN---EQFTELDLRMLVFL--------GGALRTREKWDGL 325 (360)
T ss_dssp CGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHH--------SCCCCBHHHHHHH
T ss_pred cccCCCHHH-HHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc---chhhhccHHHhhhc--------CCcCCCHHHHHHH
Confidence 999998743 468999999999999999999876 3321110 00000111110011 1345688999999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
++++||++
T Consensus 326 l~~aGf~~ 333 (360)
T 1tw3_A 326 AASAGLVV 333 (360)
T ss_dssp HHHTTEEE
T ss_pred HHHCCCeE
Confidence 99999966
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-15 Score=131.32 Aligned_cols=96 Identities=24% Similarity=0.291 Sum_probs=77.2
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHH----HHc-------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKIC----VDR-------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a----~~~-------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
+.++.+|||||||+|.++. ..|+.+|+|+|+|+.|++.+ +++ ++.++++|+.++++++++ |.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 4678899999999999753 37789999999999988753 221 578999999999987766 7666
Q ss_pred ec---cch--hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SI---AVL--HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~---~~l--~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ..+ +|+++ +..++++++++|||||.+++..
T Consensus 104 ~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGS---SPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EESCCHHHHHHHHTS---SSHHHHHHHHTEEEEEEEEEEE
T ss_pred EEccchhhhhhhhcc---HHHHHHHHHHHcCCCcEEEEEe
Confidence 32 333 37888 6899999999999999999964
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.5e-15 Score=139.89 Aligned_cols=139 Identities=18% Similarity=0.170 Sum_probs=98.7
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHH------cCCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVD------RGHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~------~~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
++++.+|||||||+|.++. ..|+.+++++|++ .++..++. .+++++.+|+. .+++ +||+|++..++
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vl 257 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRIL 257 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCG
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhc
Confidence 5677899999999999753 4788999999994 44442110 14889999996 3444 89999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
||+++++ ..++|++++++|||||+++|.++......... .......+... .......+.++|.+++++
T Consensus 258 h~~~d~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~-------~~~~~d~~~~~----~~~~~~~t~~e~~~ll~~ 325 (348)
T 3lst_A 258 HNWGDED-SVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH-------QSKEMDFMMLA----ARTGQERTAAELEPLFTA 325 (348)
T ss_dssp GGSCHHH-HHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC-------HHHHHHHHHHH----TTSCCCCBHHHHHHHHHH
T ss_pred cCCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc-------hhhhcChhhhh----cCCCcCCCHHHHHHHHHH
Confidence 9999843 47999999999999999999987654321110 01111111100 011345678999999999
Q ss_pred CCCcc
Q 017080 270 GSEEQ 274 (377)
Q Consensus 270 aGF~~ 274 (377)
+||++
T Consensus 326 aGf~~ 330 (348)
T 3lst_A 326 AGLRL 330 (348)
T ss_dssp TTEEE
T ss_pred CCCce
Confidence 99966
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=124.63 Aligned_cols=104 Identities=22% Similarity=0.259 Sum_probs=78.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCceeEEEecc-
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAISIA- 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~~fD~V~~~~- 187 (377)
.++++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++++++.|+..++ +.+++||+|++..
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 457889999999999997532 2378999999999999999876 4688888877753 4578899998873
Q ss_pred chhh-----cCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHH-----LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h-----~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.+++ ....+....+++++.++|||||.+++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 3332 1122336789999999999999999988753
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-14 Score=124.43 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=81.8
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+|||+|.++. ..+..+|+|+|+|+.+++.++++ +++++.+|+.+.....++||+|++..
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 116 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG 116 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence 45678899999999999753 36778999999999999999875 57889999976543447899999998
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++ + +..+++++.++|||||++++....
T Consensus 117 ~~~---~---~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 117 SGG---M---LEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CTT---C---HHHHHHHHHHHCCTTCEEEEEECB
T ss_pred CCc---C---HHHHHHHHHHhcCCCeEEEEEecc
Confidence 776 4 789999999999999999998654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=131.00 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=100.3
Q ss_pred CCCEEEEECCccCc---cc---c-cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC----CC--CCcee
Q 017080 122 SGSLVLDAGCGNGK---YL---G-LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP----YR--SDFGD 181 (377)
Q Consensus 122 ~~~~vLDiGcG~G~---~~---~-~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~----~~--~~~fD 181 (377)
...+|||||||++. .. . ..|+++|+++|.|+.|++.|+++ ++.|+++|+.+++ .+ .+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 34699999999733 22 2 37899999999999999999886 3789999998852 11 34566
Q ss_pred -----EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCC
Q 017080 182 -----AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256 (377)
Q Consensus 182 -----~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 256 (377)
.|+++.+|||+++.+++..+++++++.|+|||+|++++.......... ......+.... ....
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~--------~~~~~~~~~~g----~p~~ 225 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEV--------GRVAREYAARN----MPMR 225 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHH--------HHHHHHHHHTT----CCCC
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHH--------HHHHHHHHhcC----CCCc
Confidence 688999999999976568999999999999999999987654221110 11111121111 1246
Q ss_pred CCCcccHHhHhhcCCCcc
Q 017080 257 ARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 257 ~~~~~~l~~~l~~aGF~~ 274 (377)
+.+.+++.+++. ||+.
T Consensus 226 ~rs~~ei~~~f~--Glel 241 (277)
T 3giw_A 226 LRTHAEAEEFFE--GLEL 241 (277)
T ss_dssp CCCHHHHHHTTT--TSEE
T ss_pred cCCHHHHHHHhC--CCcc
Confidence 678899999995 9965
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-14 Score=139.03 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=102.4
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
+.++.+|||||||+|.++. .+|+.+++++|+ +.+++.+++. +++++.+|+.+ +++. ||+|++..++||+++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD 261 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCH
Confidence 3466899999999999753 378899999999 9999888764 68999999976 5543 999999999999988
Q ss_pred hHHHHHHHHHHHHcccc---CcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 195 ESRRKKAIEELVRVVKK---GSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 195 ~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
.+ ..++|++++++||| ||+++|.++........ ..+. ........+... .. ....+.++|.++++++|
T Consensus 262 ~~-~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~--~~~~-~~~~~~d~~~~~----~~-g~~~t~~e~~~ll~~aG 332 (352)
T 1fp2_A 262 KD-CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDE--NQVT-QIKLLMDVNMAC----LN-GKERNEEEWKKLFIEAG 332 (352)
T ss_dssp HH-HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSC--HHHH-HHHHHHHHHGGG----GT-CCCEEHHHHHHHHHHTT
T ss_pred HH-HHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCc--cchh-hhHhhccHHHHh----cc-CCCCCHHHHHHHHHHCC
Confidence 43 45999999999999 99999998764322110 0000 001111111110 00 23457889999999999
Q ss_pred Ccc
Q 017080 272 EEQ 274 (377)
Q Consensus 272 F~~ 274 (377)
|++
T Consensus 333 f~~ 335 (352)
T 1fp2_A 333 FQH 335 (352)
T ss_dssp CCE
T ss_pred CCe
Confidence 966
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=128.89 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCC---CCCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVN---LPYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~---~~~~~~~fD~V~~ 185 (377)
.++||.+|||+|||+|.++. . .|...|+|+|+|+.|++.++++ |+..+.+|+.. .+...+++|+|++
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence 36899999999999999753 2 6889999999999999988776 67788888865 3456789999986
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. +.|..+ ...++.++.+.|||||.++++...
T Consensus 154 d--~~~~~~---~~~~l~~~~r~LKpGG~lvI~ik~ 184 (233)
T 4df3_A 154 D--VAQPEQ---AAIVVRNARFFLRDGGYMLMAIKA 184 (233)
T ss_dssp C--CCCTTH---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred e--ccCChh---HHHHHHHHHHhccCCCEEEEEEec
Confidence 4 333333 789999999999999999998643
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=131.91 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=79.5
Q ss_pred CCCEEEEECCccCc----cc----ccCC----CceEEEEeCCHHHHHHHHHc----------------------------
Q 017080 122 SGSLVLDAGCGNGK----YL----GLNP----DCFFVGCDISPSLIKICVDR---------------------------- 161 (377)
Q Consensus 122 ~~~~vLDiGcG~G~----~~----~~~~----~~~v~gvD~s~~~~~~a~~~---------------------------- 161 (377)
++.+|||+|||||. ++ ...+ +.+|+|+|+|+.|++.|+++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999997 22 2212 57999999999999999874
Q ss_pred ----------CCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 162 ----------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 162 ----------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.+.|.+.|+.+.|++ .++||+|+|.++++|++++. ..++++++++.|+|||++++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~-~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-QEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-HHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHH-HHHHHHHHHHHhCCCcEEEEE
Confidence 267888898886665 57899999999999997643 689999999999999999884
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-14 Score=125.51 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=79.5
Q ss_pred CCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
+.++.+|||+|||+|.++. ..+..+|+|+|+|+.+++.|+++ ++++..+|+.+.+ +++||+|++..++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcH
Confidence 4678899999999999753 24556999999999999999886 3889999987743 6899999999888
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++ ..+++++.++|||||.+++.++.
T Consensus 136 ~~~------~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 136 EIL------LDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp HHH------HHHGGGSGGGEEEEEEEEEEEEE
T ss_pred HHH------HHHHHHHHHhcCCCCEEEEEecC
Confidence 763 57899999999999999997654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=121.84 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=78.4
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh---
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE--- 195 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~--- 195 (377)
.++.+|||+|||+|.++.. ..+ +|+|+|+|+.|++. ..+++++++|+.+ ++++++||+|+++..+++.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~--~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES--HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT--CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc--ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccccc
Confidence 4567999999999997642 333 99999999999998 5579999999988 6667899999999988876652
Q ss_pred ---HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 196 ---SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 196 ---~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+...+++++.+.| |||.+++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 01357889999999 99999998754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-14 Score=129.25 Aligned_cols=126 Identities=14% Similarity=0.217 Sum_probs=90.2
Q ss_pred HHHHHHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc---
Q 017080 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--- 161 (377)
Q Consensus 89 ~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--- 161 (377)
..+.+++.+....|... ...|. ..+. .++.+|||||||+|.++. ..|+..|+|+|+|+.+++.|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~-~~d~~---~~f~--~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~ 80 (218)
T 3dxy_A 7 HALENYWPVMGVEFSED-MLDFP---ALFG--REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE 80 (218)
T ss_dssp CHHHHHHHHHBCCCCSS-CCCHH---HHHS--SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhCCCCCCC-CCCHH---HHcC--CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH
Confidence 34555555555444322 12232 2232 256799999999999653 47889999999999999998875
Q ss_pred ----CCeEEEeeCCCC-C--CCCCceeEEEeccchhhcCChHH-----HHHHHHHHHHccccCcEEEEEEc
Q 017080 162 ----GHEVLVADAVNL-P--YRSDFGDAAISIAVLHHLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 162 ----~~~~~~~d~~~~-~--~~~~~fD~V~~~~~l~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+++++.+|+.++ + +++++||.|++.....+...... ...+++++.++|||||.+++.+.
T Consensus 81 ~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 81 EGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp TTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred hCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 578999998874 3 67899999999865443332110 02599999999999999999874
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-14 Score=128.51 Aligned_cols=96 Identities=17% Similarity=0.360 Sum_probs=72.5
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCC-HHHHHHH---HHc-------CCeEEEeeCCCCCCC-CCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDIS-PSLIKIC---VDR-------GHEVLVADAVNLPYR-SDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s-~~~~~~a---~~~-------~~~~~~~d~~~~~~~-~~~fD~V~ 184 (377)
.++.+|||||||+|.++. ..++..|+|+|+| +.|++.| +++ ++.+.++|++++|.. .+.+|.|+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 577899999999999753 3788899999999 7777776 443 578999999988632 25666666
Q ss_pred eccchhh-----cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHH-----LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h-----~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+.....+ ..+ ...+|++++|+|||||.+++..
T Consensus 103 ~~~~~~~~~~~~~~~---~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKP---NRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTT---CHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcc---hHHHHHHHHHhcCCCcEEEEEE
Confidence 6543222 122 3578999999999999999954
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-14 Score=134.32 Aligned_cols=135 Identities=11% Similarity=0.111 Sum_probs=98.2
Q ss_pred ChhhhHHHHHHHHHhhCccccccc---------ccc-----hHHHHHHHhCCCCCCEEEEECCccCcccc----cCCCce
Q 017080 83 TPELEKKYVHRVYDAIAPHFSSTR---------FAK-----WPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCF 144 (377)
Q Consensus 83 ~~~~~~~~~~~~y~~~a~~y~~~~---------~~~-----~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~ 144 (377)
....-.+.+...|++.....+.-+ +.. ...++..+ .+.++.+|||||||+|.++. ..+..+
T Consensus 121 ~~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l-~l~~gd~VLDLGCGtG~l~l~lA~~~g~~k 199 (438)
T 3uwp_A 121 STGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEI-KMTDDDLFVDLGSGVGQVVLQVAAATNCKH 199 (438)
T ss_dssp CHHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGGGTHHHHHHHHHHHH-CCCTTCEEEEESCTTSHHHHHHHHHCCCSE
T ss_pred CHHHHHHHHHHHHhhcCCCHHHhcCcccCCCcccCCCCHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCCCCE
Confidence 346777788889987766433311 111 12333332 46788999999999999652 234446
Q ss_pred EEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCCCCCC--CceeEEEeccchhhcCChHHHHHHHHHHH
Q 017080 145 FVGCDISPSLIKICVDR----------------GHEVLVADAVNLPYRS--DFGDAAISIAVLHHLSTESRRKKAIEELV 206 (377)
Q Consensus 145 v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~~~~~~--~~fD~V~~~~~l~h~~~~~~~~~~l~~~~ 206 (377)
|+|||+|+.+++.|+++ ++.|+++|+.++++.+ ..||+|+++.++. .++ ....|++++
T Consensus 200 VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pd---l~~aL~Ei~ 275 (438)
T 3uwp_A 200 HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-GPE---VDHQLKERF 275 (438)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-CHH---HHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEccccc-Cch---HHHHHHHHH
Confidence 99999999999888751 4789999999987654 5799999987763 333 788999999
Q ss_pred HccccCcEEEEEEcCC
Q 017080 207 RVVKKGSLVLITVWAV 222 (377)
Q Consensus 207 r~LkpgG~l~i~~~~~ 222 (377)
++|||||+|++.+...
T Consensus 276 RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 276 ANMKEGGRIVSSKPFA 291 (438)
T ss_dssp TTSCTTCEEEESSCSS
T ss_pred HcCCCCcEEEEeeccc
Confidence 9999999999886543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-14 Score=122.81 Aligned_cols=99 Identities=10% Similarity=0.035 Sum_probs=82.4
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEeccc
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~~~ 188 (377)
.++.+|||+|||+|.++. ..+..+|+|+|+|+.+++.++++ +++++++|+.+++ +++++||+|++...
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 467899999999999754 24455899999999999999886 4789999998753 44789999999988
Q ss_pred hhhc-CChHHHHHHHHHHHH--ccccCcEEEEEEcCC
Q 017080 189 LHHL-STESRRKKAIEELVR--VVKKGSLVLITVWAV 222 (377)
Q Consensus 189 l~h~-~~~~~~~~~l~~~~r--~LkpgG~l~i~~~~~ 222 (377)
+++. .+ ...+++++.+ +|||||.+++.....
T Consensus 123 ~~~~~~~---~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDSAD---VDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCHHH---HHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcchhh---HHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 7765 33 7899999999 999999999987543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=132.59 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=104.1
Q ss_pred CCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.+..+|||||||+|.++ +.+|+.+++..|+ |.+++.++++ +++++.+|+...|.+ .+|+|++..+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v 253 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARV 253 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESS
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeee
Confidence 345679999999999975 3489999999998 8899988875 589999999876543 4799999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHH--hhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYV--EEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
||+++|++ ..++|+++++.|+|||+++|.+......... +....+. .-+... .....+.++|+++
T Consensus 254 lh~~~d~~-~~~iL~~~~~al~pgg~lli~e~~~~~~~~~------~~~~~~~dl~ml~~~------~g~ert~~e~~~l 320 (353)
T 4a6d_A 254 LHDWADGK-CSHLLERIYHTCKPGGGILVIESLLDEDRRG------PLLTQLYSLNMLVQT------EGQERTPTHYHML 320 (353)
T ss_dssp GGGSCHHH-HHHHHHHHHHHCCTTCEEEEEECCCCTTSCC------CHHHHHHHHHHHHSS------SCCCCCHHHHHHH
T ss_pred cccCCHHH-HHHHHHHHHhhCCCCCEEEEEEeeeCCCCCC------CHHHHHHHHHHHHhC------CCcCCCHHHHHHH
Confidence 99999855 6789999999999999999998764422110 0011111 111110 1234578899999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
++++||++
T Consensus 321 l~~AGf~~ 328 (353)
T 4a6d_A 321 LSSAGFRD 328 (353)
T ss_dssp HHHHTCEE
T ss_pred HHHCCCce
Confidence 99999966
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=117.89 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=76.9
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CCCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~~~~~~fD~V~~ 185 (377)
.+.++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++ ++ ++.+|+.+ ++..+++||+|++
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~ 100 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFI 100 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEE
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEE
Confidence 45678899999999999753 35788999999999999999876 34 77777754 3332389999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..+++| ..+++++.++|||||.+++....
T Consensus 101 ~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 101 GGGLTA-------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CC-TTC-------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred CCcccH-------HHHHHHHHHhcCCCCEEEEEeec
Confidence 999987 26899999999999999998764
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=122.35 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHH----HHHHHc-CCeEEEeeCCCC----CCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLI----KICVDR-GHEVLVADAVNL----PYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~----~~a~~~-~~~~~~~d~~~~----~~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++. ..+..+|+|+|+|+.|+ +.++.+ ++.++++|+... ++. ++||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 4678899999999999753 24467999999999865 444443 677888888773 443 889999997
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. .++ ++...++++++++|||||.+++..
T Consensus 134 ~-~~~----~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 I-AQK----NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp C-CST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cCh----hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 221 224567999999999999999985
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=118.96 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=82.4
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------C--CeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~--~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ + +++..+|+.+ ++++++||+|++..+
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~ 128 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP 128 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCC
Confidence 45788999999999997532 2277999999999999999876 2 7889999887 345778999999988
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++|.. +....+++++.++|+|||.+++.++..
T Consensus 129 ~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 129 IRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp STTCH--HHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cccch--hHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 87632 227899999999999999999998764
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=125.27 Aligned_cols=92 Identities=17% Similarity=0.058 Sum_probs=78.1
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---~~~fD~V~~~ 186 (377)
.++.+|||||||+|.++. ..++.+|+|+|+|+.+++.++++ +++++++|+.++++. +++||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 467899999999998642 26788999999999999998875 578999999887653 6799999997
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. +.+ +..+++++.++|||||.+++..
T Consensus 149 ~----~~~---~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 149 A----VAR---LSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp C----CSC---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred c----cCC---HHHHHHHHHHhcCCCCEEEEEe
Confidence 6 355 7899999999999999998864
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=122.04 Aligned_cols=100 Identities=17% Similarity=0.297 Sum_probs=81.1
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEecc
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIA 187 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~~ 187 (377)
.++.+|||||||+|.++. ..|+.+++|+|+|+.+++.|+++ ++.++.+|+.+++ +++++||+|++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 457899999999999753 37889999999999999998875 5789999999876 7788999999987
Q ss_pred chhhcCChH-----HHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+..... ....+++++.++|||||.+++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 654332100 025899999999999999999763
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-14 Score=120.85 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=85.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCC
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSD 178 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~ 178 (377)
.+...+..+.++.+|||+|||+|.++. . .++.+++|+|+|+ +++. .++++..+|+.+.+ ++++
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---CcEEEEEcccccchhhhhhhccCCCC
Confidence 344444456788999999999999753 2 4678999999999 7654 45889999998876 6778
Q ss_pred ceeEEEeccchhhcCChHH--------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 179 FGDAAISIAVLHHLSTESR--------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~--------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+||+|++..++++..+... ...+++++.++|+|||.+++.++...
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 9999999999888776210 16899999999999999999887543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-14 Score=133.99 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=101.4
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.++.+|||||||+|.++. ..|+.+++++|+ +.+++.+++. +++++.+|+.+ +++ +||+|++..++||++++
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~ 267 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDE 267 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHH
Confidence 456899999999999753 378889999999 7888877653 68999999987 655 49999999999999884
Q ss_pred HHHHHHHHHHHHcccc---CcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCC
Q 017080 196 SRRKKAIEELVRVVKK---GSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSE 272 (377)
Q Consensus 196 ~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF 272 (377)
+ ..++|++++++||| ||+++|.++........ +.+. ............ .......+.++|.++++++||
T Consensus 268 ~-~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~--~~~~-~~~~~~d~~~~~----~~~g~~~t~~e~~~ll~~aGf 339 (358)
T 1zg3_A 268 Q-SLKILKNSKEAISHKGKDGKVIIIDISIDETSDD--RGLT-ELQLDYDLVMLT----MFLGKERTKQEWEKLIYDAGF 339 (358)
T ss_dssp H-HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSC--HHHH-HHHHHHHHHHHH----HHSCCCEEHHHHHHHHHHTTC
T ss_pred H-HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCcc--chhh-hHHHhhCHHHhc----cCCCCCCCHHHHHHHHHHcCC
Confidence 3 45999999999999 99999988664322110 0000 000000000000 001234688999999999999
Q ss_pred cc
Q 017080 273 EQ 274 (377)
Q Consensus 273 ~~ 274 (377)
++
T Consensus 340 ~~ 341 (358)
T 1zg3_A 340 SS 341 (358)
T ss_dssp CE
T ss_pred Ce
Confidence 66
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=131.49 Aligned_cols=98 Identities=20% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||||||+|.++.. ....+|+|+|+|+ +++.|+++ +++++.+|+.++++++++||+|++..
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 139 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence 356788999999999997532 3345999999997 88888764 47899999999988889999999987
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
+.+++.....+..++.++.++|||||.++.
T Consensus 140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred chhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 433333322378999999999999999873
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=123.37 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=79.6
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEecc
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIA 187 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~~ 187 (377)
.++.+|||||||+|.++. ..|+..|+|+|+|+.+++.|+++ ++.++.+|+.+++ +++++||.|++..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 356799999999999753 37889999999999999998875 5789999998865 6788999998865
Q ss_pred chhhcCChH-----HHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+..... ....+++++.++|||||.+++.+.
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 443322100 025799999999999999999863
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=125.94 Aligned_cols=92 Identities=35% Similarity=0.440 Sum_probs=79.7
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.++.+|||||||+|.++. ..++.+|+|+|+|+.+++.++++ ++.+..+|+.++++++++||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 577899999999999763 24678999999999999999987 5889999999999888999999986542
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
..++++.++|||||.+++.++..
T Consensus 159 -----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 -----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred -----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 35889999999999999998764
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=119.96 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=83.1
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC-CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~~fD~V~ 184 (377)
.+.++.+|||+|||+|.++.. .+..+|+|+|+|+.+++.|+++ +++++++|+.+++ +.+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 457789999999999986532 3667999999999999999876 4789999998875 5678999999
Q ss_pred eccch-h-----hcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 185 SIAVL-H-----HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 185 ~~~~l-~-----h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+...+ . +....+....+++++.++|||||++++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 88655 1 12222236789999999999999999988654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-14 Score=122.48 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=78.5
Q ss_pred CCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----CC--eEEEeeCCCCCCCCCceeEEEeccch
Q 017080 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GH--EVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~~--~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
+++..+|||+|||+|.++ ...|+++|+++|+|+.|++.++++ ++ ++...|.... .+.++||+|++..++
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKML 125 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCH
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHH
Confidence 567889999999999975 347889999999999999999987 33 4555666543 457889999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
||+++ .+..+.++++.|||||.++-..
T Consensus 126 HlL~~---~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVLKQ---QDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHH---TTCCHHHHHHTCEEEEEEEEEE
T ss_pred Hhhhh---hHHHHHHHHHHhCCCCEEEEeC
Confidence 99943 6788889999999998765543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-14 Score=134.17 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=79.6
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. .+..+|+|+|+|+ +++.|+++ .++++.+|++++++++++||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 35788999999999997532 4455999999995 88888875 278999999999988899999999776
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.+++.....+..+++++.++|||||+++..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 555522222889999999999999998744
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-14 Score=136.86 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=88.9
Q ss_pred HHhhCccccccccc---ch-HHHHHHHhCC-CCCCEEEEECCc------cCccc----c-cCCCceEEEEeCCHHHHHHH
Q 017080 95 YDAIAPHFSSTRFA---KW-PKVATFLNSL-PSGSLVLDAGCG------NGKYL----G-LNPDCFFVGCDISPSLIKIC 158 (377)
Q Consensus 95 y~~~a~~y~~~~~~---~~-~~~~~~l~~~-~~~~~vLDiGcG------~G~~~----~-~~~~~~v~gvD~s~~~~~~a 158 (377)
|++++..|....+. .+ .....++..+ .++.+||||||| +|..+ . ..|+++|+|+|+|+.|..
T Consensus 184 fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~-- 261 (419)
T 3sso_A 184 LSELSSRYFTPKFGFLHWFTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV-- 261 (419)
T ss_dssp HHHHHHHTTCTTBSSSCBCHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG--
T ss_pred HHHHHHHhCCCcccccchHHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh--
Confidence 56666677654433 12 2233334333 456899999999 55432 2 358899999999999842
Q ss_pred HHcCCeEEEeeCCCCCCC------CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 159 VDRGHEVLVADAVNLPYR------SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 159 ~~~~~~~~~~d~~~~~~~------~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
...+++|+++|+.++++. +++||+|++... |++.+ +..+|++++++|||||++++.++.
T Consensus 262 ~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~d---~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 262 DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINAH---VRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHHH---HHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cCCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccchh---HHHHHHHHHHhcCCCeEEEEEecc
Confidence 223799999999998876 689999999754 55554 789999999999999999998754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-13 Score=117.24 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=77.7
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.|+++ +++++.+|+.+......+||+|++...
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 131 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG 131 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence 456788999999999997532 2278999999999999999876 478899999884333467999998774
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+ + .. +++++.++|||||++++....
T Consensus 132 ~----~---~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 132 G----S---QA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp C----C---HH-HHHHHHHHSCTTCEEEEEECS
T ss_pred c----c---HH-HHHHHHHhcCCCcEEEEEecC
Confidence 4 3 56 999999999999999998764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-14 Score=136.12 Aligned_cols=100 Identities=18% Similarity=0.084 Sum_probs=81.3
Q ss_pred hCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
..+.++.+|||||||+|.++.. ....+|+|+|+| .|++.|+++ +++++.+|+++++++ ++||+|++.
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~ 136 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISE 136 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEEC
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEc
Confidence 3456789999999999997532 323399999999 999888875 278999999998876 899999997
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+.+++..+..+..+++++.++|||||.+++..
T Consensus 137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 137 WMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred ChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 766766543337889999999999999998754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=119.72 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=80.5
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++..+|+...+..+++||+|++..++
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAP 153 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccch
Confidence 456789999999999997532 2267999999999999999876 4789999998876667899999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+|+++ ++.++|||||++++....
T Consensus 154 ~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 154 PEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred hhhhH---------HHHHhcccCcEEEEEEcC
Confidence 99986 378999999999999876
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-13 Score=121.99 Aligned_cols=100 Identities=23% Similarity=0.327 Sum_probs=76.0
Q ss_pred CCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------------CCeEEEeeCCC-CC--CCCCce
Q 017080 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVN-LP--YRSDFG 180 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~-~~--~~~~~f 180 (377)
.++.+|||||||+|.++ ...|+..|+|+|+|+.|++.|+++ +++++++|+.. ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 45679999999999964 347889999999999999887631 57899999987 66 778999
Q ss_pred eEEEeccchhhcCChHH-----HHHHHHHHHHccccCcEEEEEEc
Q 017080 181 DAAISIAVLHHLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|.|++...-.|...... ...+++++.++|||||.|++.+.
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99987654333221000 04799999999999999999864
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.5e-13 Score=122.10 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec---
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI--- 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~--- 186 (377)
.++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++ +++++++|+.+. +++++||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCC
Confidence 467899999999999652 36788999999999999999876 478888998763 446789999998
Q ss_pred ----------cchhhcCCh---------HHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 ----------AVLHHLSTE---------SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ----------~~l~h~~~~---------~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+++|-+.. +....+++++.++|||||++++..
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 344444321 126789999999999999999863
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-13 Score=119.53 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=76.8
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCC----CCCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVN----LPYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~----~~~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++. ..+..+|+|+|+|+.+++.++++ ++.++.+|+.. +++. ++||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~-- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY-- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE--
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE--
Confidence 4578899999999999653 24567999999999999988765 57889999988 6665 7899998
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+++++.+....+++++.++|||||.+++.
T Consensus 149 ---~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 149 ---EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ---ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 45666332478899999999999999997
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=129.39 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=80.3
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. .+..+|+|+|+|+ +++.|+++ +++++.+|+.+++++ ++||+|++..+
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 125 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc
Confidence 45788999999999997532 4456999999996 88877764 478999999998765 68999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++|+..+. ....+.++.++|||||.+++...
T Consensus 126 ~~~~~~~~-~~~~l~~~~~~LkpgG~li~~~~ 156 (348)
T 2y1w_A 126 GYMLFNER-MLESYLHAKKYLKPSGNMFPTIG 156 (348)
T ss_dssp BTTBTTTS-HHHHHHHGGGGEEEEEEEESCEE
T ss_pred hhcCChHH-HHHHHHHHHhhcCCCeEEEEecC
Confidence 99887644 67888899999999999987643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=116.07 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=80.3
Q ss_pred hCCCCCCEEEEECCc-cCccccc---CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC-CCCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCG-NGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL-PYRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG-~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~-~~~~~~fD~V~~~ 186 (377)
..++++.+|||+||| +|.++.. ..+.+|+|+|+|+.+++.|+++ +++++++|+..+ ++++++||+|+++
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence 346788999999999 9997532 2278999999999999999876 488999997543 4557899999998
Q ss_pred cchhhcCCh----------------HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTE----------------SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~----------------~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
-.+++..+. +....+++++.++|||||++++..+.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 766554431 11378999999999999999997643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-14 Score=144.29 Aligned_cols=103 Identities=23% Similarity=0.299 Sum_probs=83.6
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC--CCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~--~~~~~~fD~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. ..|++|+|||+|+.+++.|+.+ +++|.+++++++ ++.+++||+|+|..+
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 35678999999999998642 5689999999999999998865 368899999887 456789999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+||+++.. ....+..+.+.|+++|..++..+...
T Consensus 144 ~ehv~~~~-~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 144 FHHIVHLH-GIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp HHHHHHHH-CHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred hhcCCCHH-HHHHHHHHHHHhccccceeeEEeccc
Confidence 99999843 23445678888999988888766543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=116.23 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=72.7
Q ss_pred CCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHH----HHHHHc-CCeEEEeeCCCCC---CCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI----KICVDR-GHEVLVADAVNLP---YRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~----~~a~~~-~~~~~~~d~~~~~---~~~~~fD~V~~~ 186 (377)
+.+|.+|||+|||+|.++. . .+...|+|+|+|+.|+ +.++++ ++.++++|+.... ...++||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5689999999999999753 2 5678999999999875 444443 7899999998643 124689999998
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
... ++ ....++..+.+.|||||.++++..
T Consensus 154 ~a~---~~--~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 154 IAQ---PD--QTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp CCC---TT--HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCC---hh--HHHHHHHHHHHhCCCCeEEEEEEc
Confidence 654 44 133445566679999999999854
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-13 Score=129.39 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=84.3
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchhh-
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHH- 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h- 191 (377)
.++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ .++++.+|+.+.+.++++||+|+++..+++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 3678999999999997642 3367999999999999999886 478999999998776789999999999988
Q ss_pred --cCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 192 --LSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 192 --~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
... +....+++++.++|||||.+++....
T Consensus 312 ~~~~~-~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 312 GAVIL-DVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CSSCC-HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccccH-HHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 222 22789999999999999999998644
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-13 Score=127.95 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=77.9
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. .+..+|+|+|+| .+++.|+++ +++++.+|+.++++++++||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 34678999999999997532 344599999999 588888765 378999999998888889999999866
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
.+++.....+..++.++.++|||||.++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 55543333278999999999999999874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-13 Score=116.11 Aligned_cols=107 Identities=16% Similarity=0.075 Sum_probs=81.7
Q ss_pred HHHHHHhCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CCCCCCc
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRSDF 179 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~~~~~~ 179 (377)
.+...+....++.+|||+|||+|.++. ..+..+|+|+|+|+.+++.++++ ++.++.+|+.+ ++..+++
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR 100 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCC
Confidence 444555445678899999999999753 24456999999999999999875 36788888877 3434567
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHH--HccccCcEEEEEEcCC
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAV 222 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~--r~LkpgG~l~i~~~~~ 222 (377)
||+|++...+++ .. ....++.+. ++|||||.+++.....
T Consensus 101 fD~i~~~~~~~~-~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 101 FDLVFLDPPYAK-ET---IVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp EEEEEECCSSHH-HH---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCEEEECCCCCc-ch---HHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 999999876542 22 567777777 9999999999987654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-13 Score=114.72 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=77.9
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCC-CceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRS-DFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~-~~fD~V~~~~ 187 (377)
.+.++.+|||+|||+|.++.. ....+|+|+|+|+.+++.++++ ++.+..+|+.+ ++++ ++||+|++..
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGG 108 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECC
Confidence 466788999999999997532 2238999999999999999874 46788888776 3333 6899999998
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++| +..+++++.++|+|||.+++..+.
T Consensus 109 ~~~~------~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 109 SGGE------LQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp CTTC------HHHHHHHHHHTEEEEEEEEEEECB
T ss_pred chHH------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 7753 578999999999999999998754
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=115.40 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=76.4
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
++.+|||+|||+|.++. ..++.+++|+|+|+.+++.++++ ++.+..+|+.+++ +.++||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~--- 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA--- 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec---
Confidence 47899999999999753 36788999999999999999875 4788999998865 467899999864
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+.+ +..+++++.++|+|||.+++..
T Consensus 141 -~~~---~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 141 -FAS---LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSS---HHHHHHHHTTSEEEEEEEEEEE
T ss_pred -cCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 344 7899999999999999999875
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-13 Score=115.23 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=79.9
Q ss_pred HHhCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC----CCCCce
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP----YRSDFG 180 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~----~~~~~f 180 (377)
.+....++.+|||+|||+|.++. ..+..+|+|+|+|+.+++.|+++ +++++.+|+.+.. ..+++|
T Consensus 38 ~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~f 117 (187)
T 2fhp_A 38 MIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQF 117 (187)
T ss_dssp HHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred HHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCC
Confidence 33334567899999999999753 24457999999999999999875 3788999987632 236789
Q ss_pred eEEEeccchhhcCChHHHHHHHHHH--HHccccCcEEEEEEcCC
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITVWAV 222 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~--~r~LkpgG~l~i~~~~~ 222 (377)
|+|++...++ ..+ ....++.+ .++|||||.+++.....
T Consensus 118 D~i~~~~~~~-~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 118 DLVLLDPPYA-KQE---IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EEEEECCCGG-GCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CEEEECCCCC-chh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 9999988754 444 56777777 89999999999987654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.9e-13 Score=122.55 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=79.9
Q ss_pred HHHHhCCC-CCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCc
Q 017080 114 ATFLNSLP-SGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDF 179 (377)
Q Consensus 114 ~~~l~~~~-~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~ 179 (377)
+..+..+. ++.+|||+|||+|.++. .....+|+|+|+++.+++.|+++ +++++.+|+.+++ +++++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence 33344566 78999999999999753 22333999999999999999886 3789999998865 55789
Q ss_pred eeEEEeccchhhc-----CCh------------HHHHHHHHHHHHccccCcEEEEEE
Q 017080 180 GDAAISIAVLHHL-----STE------------SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 180 fD~V~~~~~l~h~-----~~~------------~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
||+|+++-.+.+. .+. .....+++.+.++|||||++++..
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 9999997544322 110 125689999999999999999964
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-13 Score=118.58 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=76.2
Q ss_pred CCCCCCEEEEECCccCcccc----cCC--CceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------------------
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNP--DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------------------ 174 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------------------ 174 (377)
.+.++.+|||+|||+|.++. ..+ +.+|+|+|+|+.+ ...++.++++|+.+.+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----------CHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccccccchhh
Confidence 36788899999999999753 245 6899999999942 1236899999998876
Q ss_pred -------CCCCceeEEEeccchhhcC----ChHH----HHHHHHHHHHccccCcEEEEEEcC
Q 017080 175 -------YRSDFGDAAISIAVLHHLS----TESR----RKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 175 -------~~~~~fD~V~~~~~l~h~~----~~~~----~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++++||+|++..++++.. +... ...+++++.++|||||.+++..+.
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 5678999999988777642 2110 124899999999999999997764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-13 Score=123.49 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=70.1
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcCCeEE---EeeCCCCC---CCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVL---VADAVNLP---YRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~d~~~~~---~~~~~fD~V~~~~~l~h 191 (377)
.++.+|||||||||.++.. ....+|+|+|+|+.|++.+.+++-+.. ..|+..++ ++..+||+|++..++++
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 3678999999999998742 334599999999999998655432222 23444333 34456999999888775
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ ..+|.+++|+|||||.+++..
T Consensus 164 l------~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 164 L------NLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp G------GGTHHHHHHHSCTTCEEEEEE
T ss_pred H------HHHHHHHHHHcCcCCEEEEEE
Confidence 4 479999999999999999874
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-14 Score=123.46 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=64.7
Q ss_pred HHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCC-----Cc
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRS-----DF 179 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~-----~~ 179 (377)
..+....++.+|||+|||+|.++. ..++.+++|+|+|+.+++.++++ +++++++|+.+ ++++ ++
T Consensus 23 ~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~ 101 (215)
T 4dzr_A 23 RFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRP 101 (215)
T ss_dssp HHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCC
T ss_pred HHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCc
Confidence 333333678899999999999753 36788999999999999999877 46777788876 5555 89
Q ss_pred eeEEEeccch------hhcCChHH-----------------HHHHHHHHHHccccCcEEEEEE
Q 017080 180 GDAAISIAVL------HHLSTESR-----------------RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 180 fD~V~~~~~l------~h~~~~~~-----------------~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
||+|+++-.+ +|+..... ...+++++.++|||||++++..
T Consensus 102 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 102 WHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp BSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred ccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999996443 33332110 1788999999999999955544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=117.96 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=79.0
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++.+|+......+++||+|++..+++|
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHH
Confidence 456788999999999997542 1237999999999999999987 588999999873334688999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+.+ ++.++|||||.+++.....
T Consensus 147 ~~~---------~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 147 LLC---------KPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CCH---------HHHHTEEEEEEEEEEECSS
T ss_pred HHH---------HHHHHcCCCcEEEEEEcCC
Confidence 863 4889999999999997653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-13 Score=120.87 Aligned_cols=92 Identities=21% Similarity=0.139 Sum_probs=77.9
Q ss_pred CCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---~~~fD~V~~~ 186 (377)
.++.+|||||||+|..+ ...|+.+|+|+|+|+.+++.++++ +++++.+|+++++.. +++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 46789999999999863 236889999999999999999876 578999999887642 4799999997
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+ .+ +..+++.+.++|||||++++..
T Consensus 159 a~----~~---~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 159 AV----AP---LCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp SS----CC---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred Cc----CC---HHHHHHHHHHHcCCCeEEEEEe
Confidence 54 45 7899999999999999988865
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=5.5e-13 Score=119.16 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=80.3
Q ss_pred HHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CC-CC---
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LP-YR--- 176 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~-~~--- 176 (377)
..+....++.+|||||||+|..+. . .++.+|+++|+|+.+++.|+++ +++++++|+.+ ++ +.
T Consensus 51 ~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 51 DAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp HHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTS
T ss_pred HHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhc
Confidence 333334567899999999998642 2 3578999999999999999885 37899999855 33 22
Q ss_pred -CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 -SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 -~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++||+|++....++..+ ...++..+ ++|||||++++.+..
T Consensus 131 ~~~~fD~V~~d~~~~~~~~---~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRYLP---DTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCCCCSEEEECSCGGGHHH---HHHHHHHT-TCCCTTCEEEESCCC
T ss_pred CCCceEEEEEcCCcccchH---HHHHHHhc-cccCCCeEEEEeCCC
Confidence 278999999988887765 56788888 999999999887654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-13 Score=118.72 Aligned_cols=97 Identities=14% Similarity=0.071 Sum_probs=76.6
Q ss_pred CCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC--CCCCc-eeEEEec
Q 017080 122 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLP--YRSDF-GDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~--~~~~~-fD~V~~~ 186 (377)
++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ +++++.+|+.++. +++++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 578999999999997532 2335999999999999999875 3578888987643 23678 9999998
Q ss_pred cchhhcCChHHHHHHHHHH--HHccccCcEEEEEEcCC
Q 017080 187 AVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~--~r~LkpgG~l~i~~~~~ 222 (377)
..++ ..+ ...+++.+ .++|||||.+++.....
T Consensus 133 ~~~~-~~~---~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-FNL---AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-SCH---HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-Ccc---HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8754 333 67889999 67899999999987543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=124.45 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=79.2
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc----C------CeEEEeeCCCCCCCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G------HEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~----~------~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++.+|||+|||+|.++. ..|+.+|+|+|+|+.+++.++++ + +++..+|+.+ ++++++||+|+++
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 299 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence 345799999999999753 37889999999999999999876 2 6679999987 4667899999999
Q ss_pred cchhhc---CChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHL---STESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~---~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
-.+|+. .+.. ...+++++.++|||||.+++....
T Consensus 300 ppfh~~~~~~~~~-~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 300 PPFHQQHALTDNV-AWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp CCC-------CCH-HHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CCcccCcccCHHH-HHHHHHHHHHhCCCCcEEEEEEEC
Confidence 988863 3322 457899999999999999997643
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-13 Score=121.22 Aligned_cols=95 Identities=19% Similarity=0.145 Sum_probs=77.0
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
+.++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ + +++..+|+.+. +++++||+|+++...++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH
Confidence 46788999999999997532 2344999999999999999886 3 67888887662 45788999999866554
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
...+++++.++|||||+++++.+.
T Consensus 197 ------~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 197 ------HAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEeec
Confidence 468999999999999999998653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=110.04 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=79.0
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||+|||+|.++.. .++.+++|+|+|+.+++.++++ +++++.+|+.+ ++++++||+|++..+
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT- 109 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-
Confidence 456788999999999997532 3778999999999999999876 47889999887 666789999999988
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+ +..+++++.++ |||.+++..+.
T Consensus 110 ---~~---~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 110 ---KN---IEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp ---SC---HHHHHHHHHHT--TCCEEEEEESC
T ss_pred ---cc---HHHHHHHHhhC--CCCEEEEEecc
Confidence 44 78999999999 99999998754
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=113.54 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++.. .+..+|+|+|+|+.+++.++++ ++.+..+|+......+++||+|++.
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence 467788999999999997532 3558999999999999999875 4788888885533236789999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.+++|+++ ++.++|||||.+++.....
T Consensus 154 ~~~~~~~~---------~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 154 AAGPKIPE---------PLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp SBBSSCCH---------HHHHTEEEEEEEEEEESSS
T ss_pred CchHHHHH---------HHHHHcCCCcEEEEEECCC
Confidence 99998862 6889999999999997654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=115.87 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHH----HHHHH-cCCeEEEeeCCC---CCCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI----KICVD-RGHEVLVADAVN---LPYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~----~~a~~-~~~~~~~~d~~~---~~~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++. . .++.+|+|+|+|+.++ +.++. .++.++.+|+.+ +++.+++||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5678899999999999753 2 3668999999998754 44544 378899999987 34557899999995
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. ..+....++.++.++|||||.+++...
T Consensus 155 ~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 155 VA-----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CC-----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 54 222245678999999999999999654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-14 Score=129.45 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=81.9
Q ss_pred HHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
..+....++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++++|+.+++ ++++||+|+
T Consensus 71 ~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~ 149 (241)
T 3gdh_A 71 GRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVF 149 (241)
T ss_dssp HHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEE
T ss_pred HHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEE
Confidence 3333344788999999999997542 3458999999999999999875 4789999998876 578999999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+..+++|..+ ....+.+++++|+|||.+++.
T Consensus 150 ~~~~~~~~~~---~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 150 LSPPWGGPDY---ATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp ECCCCSSGGG---GGSSSBCTTTSCSSCHHHHHH
T ss_pred ECCCcCCcch---hhhHHHHHHhhcCCcceeHHH
Confidence 9999999887 556888999999999986554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=120.16 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=79.9
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
.+.++.+|||+|||+|.++. . .++.+|+|+|+|+.+++.++++ ++++..+|+.+ ++++++||+|++
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~ 185 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA 185 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE
Confidence 45778999999999998652 2 5788999999999999988875 36788899887 566789999998
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|+++ +..+++++.++|||||++++.++.
T Consensus 186 -----~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 186 -----DIPD---PWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp -----CCSC---GGGSHHHHHHTEEEEEEEEEEESS
T ss_pred -----cCcC---HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5677 679999999999999999998754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=119.75 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCCCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+|||+|.++.. ..+. +|+|+|+|+.+++.|+++ .++++++|+.+++. +++||+|++..
T Consensus 122 ~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~ 200 (278)
T 2frn_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY 200 (278)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred hCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECC
Confidence 356789999999999997532 1122 799999999999999876 26789999998765 78999999853
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
. .+ ...++.++.++|||||++++.+...
T Consensus 201 p----~~---~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 201 V----VR---THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp C----SS---GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c----hh---HHHHHHHHHHHCCCCeEEEEEEeec
Confidence 3 23 4578999999999999999987653
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=121.12 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++. ..+ ..+|+|+|+|+.+++.|+++ ++++..+|+.+.+..+++||+|++.
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 151 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT 151 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEc
Confidence 45688999999999999753 233 46899999999999999876 4788999998865557899999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+++|++ +++.++|||||++++....
T Consensus 152 ~~~~~~~---------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 152 VGVDEVP---------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp SBBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred CCHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence 9999986 3578899999999998644
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=116.45 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=81.3
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
.+.++.+|||+|||+|.++. . .|+.+|+++|+|+.+++.++++ ++.+..+|+.+.++++++||+|++
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~ 172 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL 172 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE
Confidence 46788999999999998653 2 5688999999999999998875 477899999988777889999998
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++++ +..+++++.++|||||.+++..+.
T Consensus 173 -----~~~~---~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 173 -----DLME---PWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp -----ESSC---GGGGHHHHHHHEEEEEEEEEEESC
T ss_pred -----CCcC---HHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4566 668999999999999999998754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=121.71 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=75.6
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCCC--CCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPY--RSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~~--~~~~fD~V 183 (377)
+++.+|||||||+|.++. ..+..+|+++|+|+.+++.|+++ +++++.+|+..++. ++++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 567899999999999754 24567999999999999999864 37889999877543 47899999
Q ss_pred EeccchhhcCChHHH--HHHHHHHHHccccCcEEEEEEc
Q 017080 184 ISIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~--~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++....++.+... . ..+++++.++|||||++++...
T Consensus 174 i~d~~~~~~~~~~-l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 174 IIDTTDPAGPASK-LFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCCCccccchh-hhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9977665544311 1 5899999999999999999754
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=114.48 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=83.1
Q ss_pred HHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCc
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDF 179 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~ 179 (377)
++......++++.+|||||||+|.++. ..+..+|+++|+++.+++.|+++ .+++..+|..+...+++.
T Consensus 11 RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~ 90 (230)
T 3lec_A 11 RLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADN 90 (230)
T ss_dssp HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred HHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccc
Confidence 444455567888999999999999742 35667999999999999999987 378999998886554457
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
||+|+..++...+ ...+|.+..+.|+++|+++++-
T Consensus 91 ~D~IviaGmGg~l-----I~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 91 IDTITICGMGGRL-----IADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CCEEEEEEECHHH-----HHHHHHHTGGGGTTCCEEEEEE
T ss_pred cCEEEEeCCchHH-----HHHHHHHHHHHhCcCCEEEEEC
Confidence 9999887766543 5688999999999999988885
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=124.34 Aligned_cols=99 Identities=23% Similarity=0.267 Sum_probs=80.1
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.++.+|||+|||+|.++. ..+..+|+|+|+|+.+++.++++ .++++.+|+...+ +++||+|+++.++|
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCcc
Confidence 356799999999999753 36778999999999999999876 3567888887643 77999999999988
Q ss_pred hcC--ChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 191 HLS--TESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 191 h~~--~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.. +.+....+++++.++|||||.+++....
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 521 1122789999999999999999998654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=116.22 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=78.4
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~~~~~fD~V~ 184 (377)
.+.++.+|||||||+|..+. ..++.+|+|+|+|+.+++.|+++ +++++.+|+.+. + ..+++||+|+
T Consensus 68 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 147 (232)
T 3ntv_A 68 RMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF 147 (232)
T ss_dssp HHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred hhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence 34567899999999999653 34788999999999999999875 478999999774 3 3368999999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+... ..+ ...+++++.++|||||++++.+..
T Consensus 148 ~~~~---~~~---~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 148 IDAA---KAQ---SKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp EETT---SSS---HHHHHHHHGGGEEEEEEEEEECTT
T ss_pred EcCc---HHH---HHHHHHHHHHhcCCCeEEEEeeCC
Confidence 7643 334 678999999999999999886543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.3e-13 Score=112.72 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=75.7
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC-C-CC--CCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL-P-YR--SDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~-~-~~--~~~fD~V~~~~ 187 (377)
++++.+|||+|||+|.++.. ..+..|+|+|+|+.+++.++++ +++++.+|+.+. + .+ .++||+|++..
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 33678999999999997532 2344599999999999999876 588899998763 2 11 34899999998
Q ss_pred chhhcCChHHHHHHHHHHH--HccccCcEEEEEEcCC
Q 017080 188 VLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~--r~LkpgG~l~i~~~~~ 222 (377)
+++ .+ ...+++.+. ++|||||.+++.....
T Consensus 119 ~~~--~~---~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA--MD---LAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT--SC---TTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc--hh---HHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 766 44 446666666 9999999999987654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-12 Score=112.41 Aligned_cols=94 Identities=21% Similarity=0.221 Sum_probs=77.3
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCcee
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD 181 (377)
.+.++.+|||||||+|.++. . .+..+|+|+|+|+.+++.++++ ++.+..+|+...+..+++||
T Consensus 74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence 35678999999999999653 2 3557999999999999988754 47889999887665678899
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+|++..+++++. +++.++|||||.+++....
T Consensus 154 ~i~~~~~~~~~~---------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 154 AIHVGAAAPVVP---------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEECSBBSSCC---------HHHHHTEEEEEEEEEEESC
T ss_pred EEEECCchHHHH---------HHHHHhcCCCcEEEEEEec
Confidence 999999887664 4678999999999998754
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=116.10 Aligned_cols=95 Identities=17% Similarity=0.318 Sum_probs=80.3
Q ss_pred hCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------C-CeEEEeeCCCCCCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~-~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
..+.++.+|||+|||+|.++. . .|+.+|+|+|+|+.+++.|+++ + +++..+|+.+. +++++||+|+
T Consensus 89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~ 167 (255)
T 3mb5_A 89 AGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVI 167 (255)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEE
T ss_pred hCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEE
Confidence 356788999999999999753 3 6788999999999999999876 3 78899999864 6678899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+ +.++ +..+++++.++|||||.+++..+.
T Consensus 168 ~-----~~~~---~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 168 L-----DLPQ---PERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp E-----CSSC---GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred E-----CCCC---HHHHHHHHHHHcCCCCEEEEEECC
Confidence 8 4566 678999999999999999998754
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=117.39 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=79.4
Q ss_pred HHHHHhCCCCCCEEEEECCccCccc----ccCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CCCC--
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYR-- 176 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~~~-- 176 (377)
++..+..+.++.+|||||||+|..+ ...+ +.+|+++|+|+.+++.|+++ +++++++|+.+ ++..
T Consensus 54 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~ 133 (248)
T 3tfw_A 54 FLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE 133 (248)
T ss_dssp HHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS
T ss_pred HHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC
Confidence 3344434457789999999999964 3344 78999999999999999876 47899999876 3322
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++||+|++... ..+ ...+++++.++|||||++++.+..
T Consensus 134 ~~~fD~V~~d~~---~~~---~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 134 CPAFDLIFIDAD---KPN---NPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CCCCSEEEECSC---GGG---HHHHHHHHHHTCCTTCEEEEECCS
T ss_pred CCCeEEEEECCc---hHH---HHHHHHHHHHhcCCCeEEEEeCCC
Confidence 358999998653 223 678999999999999999887644
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=114.25 Aligned_cols=96 Identities=10% Similarity=0.052 Sum_probs=76.5
Q ss_pred CCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~-~~~~~~~fD~V~~~~~l~ 190 (377)
++.+|||+|||+|.++.. ..+ .+|+|+|+|+.+++.|+++ +++++++|+.+ ++..+++||+|++...++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 568999999999997532 233 4999999999999999876 46889999877 455577999999987743
Q ss_pred hcCChHHHHHHHHHHHH--ccccCcEEEEEEcC
Q 017080 191 HLSTESRRKKAIEELVR--VVKKGSLVLITVWA 221 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r--~LkpgG~l~i~~~~ 221 (377)
... ...+++.+.+ +|+|||.+++....
T Consensus 134 -~~~---~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 -RGL---LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp -TTT---HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred -CCc---HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 444 6788888866 59999999988654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=113.31 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=79.9
Q ss_pred HHHHh-CCCCCCEEEEECCccCcccc----c-C----CCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCC
Q 017080 114 ATFLN-SLPSGSLVLDAGCGNGKYLG----L-N----PDCFFVGCDISPSLIKICVDR------------GHEVLVADAV 171 (377)
Q Consensus 114 ~~~l~-~~~~~~~vLDiGcG~G~~~~----~-~----~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~ 171 (377)
...+. .+.++.+|||||||+|.++. . . +..+|+|+|+|+.+++.|+++ ++.+..+|+.
T Consensus 71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 150 (227)
T 2pbf_A 71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY 150 (227)
T ss_dssp HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence 34443 46788999999999999653 1 2 567999999999999998875 3788999988
Q ss_pred CCC----CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 172 NLP----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 172 ~~~----~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
... ...++||+|++..+++|+. +++.++|||||++++..+.
T Consensus 151 ~~~~~~~~~~~~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 151 QVNEEEKKELGLFDAIHVGASASELP---------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp GCCHHHHHHHCCEEEEEECSBBSSCC---------HHHHHHEEEEEEEEEEEEE
T ss_pred hcccccCccCCCcCEEEECCchHHHH---------HHHHHhcCCCcEEEEEEcc
Confidence 755 5568899999999988764 5678999999999998764
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-12 Score=117.20 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=81.3
Q ss_pred CCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+.++.+|||+|||+|.++. ..++.+|+++|+|+.+++.|+++ ++.+..+|+.+.++++++||+|
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v 175 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA 175 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEE
Confidence 46788999999999999753 24678999999999999888764 3678899998887778899999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++ ++++ +..+++++.++|+|||.+++.++..
T Consensus 176 ~~-----~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 176 VL-----DMLA---PWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp EE-----ESSC---GGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EE-----CCcC---HHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 98 4556 6689999999999999999988653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.7e-12 Score=114.75 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=78.6
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--C---------CeEEEeeCCCC-------CCC
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--G---------HEVLVADAVNL-------PYR 176 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--~---------~~~~~~d~~~~-------~~~ 176 (377)
...++.+|||+|||+|.++ ...++.+|+|+|+++.+++.|+++ . +.++.+|+.++ +++
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 112 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP 112 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence 4557789999999999964 236788999999999999999876 2 67899999886 256
Q ss_pred CCceeEEEeccchhhc----------------CChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 177 SDFGDAAISIAVLHHL----------------STESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~----------------~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+++||+|+++-.+... .... ...+++.+.++|||||.+++...
T Consensus 113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGL-FEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp TTCEEEEEECCCC---------------------CC-HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 7899999997332211 1111 67899999999999999998754
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-12 Score=113.50 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=76.4
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-------C----Cc
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-------S----DF 179 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~-------~----~~ 179 (377)
+......+.++.+|||+|||+|.++.. ..+.+|+|+|+++... ..++.++++|+.+.+.. . ++
T Consensus 16 i~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~----~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 91 (191)
T 3dou_A 16 LLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE----IAGVRFIRCDIFKETIFDDIDRALREEGIEK 91 (191)
T ss_dssp HHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC----CTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred HHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc----CCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence 333333467889999999999997642 2378999999998531 23699999999886421 1 48
Q ss_pred eeEEEeccchh--------hcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 180 GDAAISIAVLH--------HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 180 fD~V~~~~~l~--------h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
||+|++..... |....+....+++.+.++|||||.+++..+...
T Consensus 92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~ 143 (191)
T 3dou_A 92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD 143 (191)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence 99999965321 211111246789999999999999999887543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-12 Score=114.99 Aligned_cols=95 Identities=21% Similarity=0.353 Sum_probs=75.4
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc---------------CCeEEEeeCCC-CC--CCC
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVN-LP--YRS 177 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~---------------~~~~~~~d~~~-~~--~~~ 177 (377)
++++.+|||||||+|.++. ..++..|+|+|+|+.+++.++++ ++.++.+|+.+ ++ +++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 4567899999999999753 36778999999999999887642 57899999987 55 668
Q ss_pred CceeEEEeccchhhcCChHH----------HHHHHHHHHHccccCcEEEEEE
Q 017080 178 DFGDAAISIAVLHHLSTESR----------RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~----------~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++|.|+.. +++..- ...+++++.++|||||.+++.+
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 899999854 333100 0489999999999999999965
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-12 Score=114.15 Aligned_cols=104 Identities=9% Similarity=0.098 Sum_probs=82.6
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCC
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD 178 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~ 178 (377)
+++......++++.+|||||||+|.++. ..+...|+++|+++.+++.|+++ .+.+..+|..+...++.
T Consensus 10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~ 89 (244)
T 3gnl_A 10 KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKD 89 (244)
T ss_dssp HHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred HHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccc
Confidence 3444555567888999999999999742 35667999999999999999987 26889999887554444
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+||+|++.++...+ ...+|.+..+.|+++|+++++-
T Consensus 90 ~~D~IviagmGg~l-----I~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 90 AIDTIVIAGMGGTL-----IRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CCCEEEEEEECHHH-----HHHHHHHTGGGGTTCCEEEEEE
T ss_pred cccEEEEeCCchHH-----HHHHHHHHHHHhCCCCEEEEEc
Confidence 69999887665533 5688999999999999999885
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-12 Score=115.12 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=79.2
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCC--CCceeEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYR--SDFGDAA 183 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~--~~~fD~V 183 (377)
...++.+|||||||+|.++. ..++.+|+++|+|+.+++.|+++ ++.+..+|+... +.. +++||+|
T Consensus 51 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 130 (233)
T 2gpy_A 51 KMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL 130 (233)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred hccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence 34567899999999999653 36688999999999999999876 378888888774 332 5789999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++....+ + ...+++++.++|||||.+++.++.
T Consensus 131 ~~~~~~~---~---~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 131 FIDAAKG---Q---YRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp EEEGGGS---C---HHHHHHHHGGGEEEEEEEEEETTT
T ss_pred EECCCHH---H---HHHHHHHHHHHcCCCeEEEEEcCC
Confidence 9977653 4 789999999999999999997543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-12 Score=113.73 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=77.3
Q ss_pred CCCEEEEECCccCcccc----c--CCCceEEEEeCCHHHHHHHHHc---C------------------------------
Q 017080 122 SGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR---G------------------------------ 162 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~--~~~~~v~gvD~s~~~~~~a~~~---~------------------------------ 162 (377)
++.+|||+|||+|.++. . .++.+|+|+|+|+.+++.|+++ .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 56799999999999652 2 3567999999999999999854 2
Q ss_pred ---Ce-------------EEEeeCCCCCC-----CCCceeEEEeccchhhcCC------hHHHHHHHHHHHHccccCcEE
Q 017080 163 ---HE-------------VLVADAVNLPY-----RSDFGDAAISIAVLHHLST------ESRRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 163 ---~~-------------~~~~d~~~~~~-----~~~~fD~V~~~~~l~h~~~------~~~~~~~l~~~~r~LkpgG~l 215 (377)
++ +.++|+.+... ..++||+|+++..+.+..+ .+....+++++.++|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 45 99999887421 3458999999877766544 233679999999999999999
Q ss_pred EEEE
Q 017080 216 LITV 219 (377)
Q Consensus 216 ~i~~ 219 (377)
++..
T Consensus 211 ~~~~ 214 (250)
T 1o9g_A 211 AVTD 214 (250)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9853
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-12 Score=116.21 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHcCCeEEEe---eCCCCC---CCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHEVLVA---DAVNLP---YRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~---d~~~~~---~~~~~fD~V~~~~~l~h 191 (377)
.++.+|||||||||.++.. ..+ .+|+|+|+|+.|++.++++.-+.... ++.... ++...||.+.+..++.+
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 4577999999999997642 224 49999999999999988763332221 121111 11222455555444444
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ ..+|++++|+|||||.+++..
T Consensus 116 l------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 116 L------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp G------GGTHHHHHHHSCTTCEEEEEE
T ss_pred H------HHHHHHHHHhccCCCEEEEEE
Confidence 3 479999999999999999964
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8e-12 Score=111.65 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=79.3
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CCCCCC
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRSD 178 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~~~~~ 178 (377)
++......++++.+|||||||+|.++ ...|..+|+++|+++.+++.|+++ ++++..+|..+ ++. .+
T Consensus 5 RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~ 83 (225)
T 3kr9_A 5 RLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TD 83 (225)
T ss_dssp HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GG
T ss_pred HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-Cc
Confidence 34444456678899999999999964 235677999999999999999987 36789999854 332 23
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+||+|+..++-..+ ...+|.+..+.|+|+|+++++-
T Consensus 84 ~~D~IviaG~Gg~~-----i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 84 QVSVITIAGMGGRL-----IARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp CCCEEEEEEECHHH-----HHHHHHHTGGGCTTCCEEEEEE
T ss_pred CCCEEEEcCCChHH-----HHHHHHHHHHHhCCCCEEEEEC
Confidence 69999887654432 5689999999999999988864
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-12 Score=111.95 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=74.9
Q ss_pred CCCCCEEEEECCccCccc----ccCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCceeEEEe
Q 017080 120 LPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAIS 185 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~----~~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~~~~fD~V~~ 185 (377)
..++.+|||||||+|..+ ...+ +.+|+++|+|+.+++.|+++ +++++.+|+.+. +..++ ||+|++
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~ 132 (210)
T 3c3p_A 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFM 132 (210)
T ss_dssp HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEE
Confidence 346679999999999864 2344 78999999999999999865 378899998763 44456 999998
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
... ..+ ...+++++.++|||||.+++.+.
T Consensus 133 ~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 133 DCD---VFN---GADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ETT---TSC---HHHHHHHHGGGEEEEEEEEEESS
T ss_pred cCC---hhh---hHHHHHHHHHhcCCCeEEEEECc
Confidence 742 334 78999999999999999988653
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-12 Score=117.24 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=80.5
Q ss_pred HHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+..+.++.+|||+|||+|..+. . .+..+|+|+|+|+.+++.++++ ++.++++|+..++..+++||+|
T Consensus 112 ~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~I 191 (315)
T 1ixk_A 112 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI 191 (315)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEE
Confidence 33456788999999999999642 2 3457999999999999998876 4688889998876556789999
Q ss_pred Eec------cchhhcCCh------H-------HHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 184 ISI------AVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 184 ~~~------~~l~h~~~~------~-------~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++. +++++.++. + ....+|+++.++|||||++++++...
T Consensus 192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 984 334433321 0 02589999999999999999987654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=116.63 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCCEEEEECCccCcccc----c----CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCC---CCCC-CceeEEEecc
Q 017080 122 SGSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNL---PYRS-DFGDAAISIA 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~----~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~---~~~~-~~fD~V~~~~ 187 (377)
++.+|||||||+|..+. . .++++|+|+|+|+.+++.|+.. +++++++|+.+. +..+ .+||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 45799999999999642 2 4688999999999998877643 689999999884 5433 4799999876
Q ss_pred chhhcCChHHHHHHHHHHHH-ccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVR-VVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r-~LkpgG~l~i~~~ 220 (377)
. |. + ...++.++.+ +|||||++++.+.
T Consensus 161 ~--~~-~---~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A--HA-N---TFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S--CS-S---HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c--hH-h---HHHHHHHHHHhhCCCCCEEEEEeC
Confidence 5 42 4 7889999997 9999999999764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-12 Score=119.94 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc---------CCeEE--EeeCCCCCCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------GHEVL--VADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---------~~~~~--~~d~~~~~~~~~~fD~V~~ 185 (377)
.+.++.+|||||||+|.++.. .. .+|+|+|+|+ |+..++++ ++.++ ++|+.+++ +++||+|+|
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~s 146 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMC 146 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEE
Confidence 467889999999999998642 22 7999999999 53222211 46788 88998876 789999999
Q ss_pred ccchhhcCChH--HH--HHHHHHHHHccccCc--EEEEEEcC
Q 017080 186 IAVLHHLSTES--RR--KKAIEELVRVVKKGS--LVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~--~~--~~~l~~~~r~LkpgG--~l~i~~~~ 221 (377)
..+ ++..+.. .. ..+|+++.++||||| .+++.++.
T Consensus 147 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 147 DVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 877 5544411 01 148999999999999 99998776
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.9e-12 Score=124.41 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=79.8
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.++.+|||||||+|.++. ..+..+|+|+|+|+ +++.|+++ +++++.+|+.+++++ ++||+|++..++
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 234 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence 467899999999999753 25567999999998 88888764 478999999987664 589999999898
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|+.++. ....+.++.++|||||.+++..
T Consensus 235 ~~~~~e~-~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 235 YMLFNER-MLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHTCHH-HHHHHHHGGGGEEEEEEEESCE
T ss_pred HhcCcHH-HHHHHHHHHHhcCCCCEEEEEe
Confidence 9987754 5678889999999999998643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=109.04 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=73.7
Q ss_pred CCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC---CCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP---YRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~---~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++. . .++.+|+|+|+|+.+++.++++ ++.++.+|+.+.. ...++||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4578899999999999753 2 3567999999999988877654 6889999998732 124689999986
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.. .++ ....+++++.++|||||.+++.
T Consensus 151 ~~---~~~--~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 151 VA---QPT--QAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CC---STT--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CC---CHh--HHHHHHHHHHHhcCCCCEEEEE
Confidence 54 222 1445699999999999999998
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-12 Score=110.99 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=74.5
Q ss_pred HHHhCCCCCCEEEEECCccCcccc----cCCC---------ceEEEEeCCHHHHHHHHHcCCeEE-EeeCCCCC------
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG----LNPD---------CFFVGCDISPSLIKICVDRGHEVL-VADAVNLP------ 174 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~----~~~~---------~~v~gvD~s~~~~~~a~~~~~~~~-~~d~~~~~------ 174 (377)
.....+.++.+|||+|||+|.++. ..+. .+|+|+|+|+.+. ..+++++ .+|+...+
T Consensus 15 ~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 15 ERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp HHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----CTTCEEECSCCTTSHHHHHHHH
T ss_pred HhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc----CCCCeEEEeccCCCHHHHHHHH
Confidence 334456788999999999999753 2332 7999999998431 1257888 88887643
Q ss_pred --CCCCceeEEEeccchhh----cCChHH----HHHHHHHHHHccccCcEEEEEEcCC
Q 017080 175 --YRSDFGDAAISIAVLHH----LSTESR----RKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 175 --~~~~~fD~V~~~~~l~h----~~~~~~----~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+++++||+|++..++++ ..+... ...+++++.++|||||.+++.++..
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 34568999999664443 232110 1488999999999999999988754
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-12 Score=113.67 Aligned_cols=92 Identities=7% Similarity=0.014 Sum_probs=73.1
Q ss_pred CCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC-C-CCCCceeEEEec
Q 017080 123 GSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P-YRSDFGDAAISI 186 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~-~-~~~~~fD~V~~~ 186 (377)
+.+|||||||+|..+ .. .++.+|+++|+|+.+++.|+++ +++++.+|+.+. + +++++||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 349999999999854 22 3578999999999999999875 367888888763 2 447899999987
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
... .+ ...+++++.++|||||++++.+.
T Consensus 137 ~~~---~~---~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 137 VSP---MD---LKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp CCT---TT---HHHHHHHHHHHEEEEEEEEETTT
T ss_pred CcH---HH---HHHHHHHHHHHcCCCcEEEEeCC
Confidence 543 23 67899999999999999998543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-12 Score=121.33 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=73.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc---------CCeEE--EeeCCCCCCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------GHEVL--VADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---------~~~~~--~~d~~~~~~~~~~fD~V~~ 185 (377)
.+.++.+|||+|||+|.++.. .. .+|+|+|+|+ |+..++++ ++.++ ++|+.+++ +++||+|+|
T Consensus 79 ~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 79 GVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp SCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 356789999999999998642 22 7999999999 54333221 46788 88998876 789999999
Q ss_pred ccchhhcCChH--HH--HHHHHHHHHccccCc--EEEEEEcC
Q 017080 186 IAVLHHLSTES--RR--KKAIEELVRVVKKGS--LVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~--~~--~~~l~~~~r~LkpgG--~l~i~~~~ 221 (377)
..+ ++..+.. .. ..+|+++.++||||| .+++.++.
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 877 5443311 01 147999999999999 99998776
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-13 Score=120.53 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=68.8
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC---CCC---CCceeEE
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL---PYR---SDFGDAA 183 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~---~~~---~~~fD~V 183 (377)
++.+|||+|||+|.++. ..++.+|+|+|+|+.|++.|+++ +++++.+|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 56799999999998642 24678999999999999999876 278999998762 344 2689999
Q ss_pred EeccchhhcCC------------hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLST------------ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~------------~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++-.+++... .+....++.+++++|||||.+.+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 99865554330 0002356789999999999987653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=113.09 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=74.8
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeC-CHHHHHHHHHc-----------------CCeEEEeeCCCCC--C--
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDI-SPSLIKICVDR-----------------GHEVLVADAVNLP--Y-- 175 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~-s~~~~~~a~~~-----------------~~~~~~~d~~~~~--~-- 175 (377)
.++.+|||||||+|.++. .....+|+|+|+ |+.+++.++++ ++.+...|..+.. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 467899999999999653 233349999999 89999988765 2445544444321 1
Q ss_pred --CCCceeEEEeccchhhcCChHHHHHHHHHHHHccc---c--CcEEEEEE
Q 017080 176 --RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK---K--GSLVLITV 219 (377)
Q Consensus 176 --~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lk---p--gG~l~i~~ 219 (377)
++++||+|++..+++|.++ ...+++.+.++|+ | ||.+++..
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~---~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA---HDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG---HHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred hccCCCCCEEEEeCcccChHH---HHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 3678999999999999887 8899999999999 9 99987754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-12 Score=112.25 Aligned_cols=103 Identities=14% Similarity=0.018 Sum_probs=78.6
Q ss_pred HHHHHhCCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CC-
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YR- 176 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~~- 176 (377)
++..+....++.+|||||||+|..+. ..+ +.+|+++|+++.+++.|+++ +++++++|+.+. + ++
T Consensus 49 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 128 (223)
T 3duw_A 49 FLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIEN 128 (223)
T ss_dssp HHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence 33444344577899999999999653 344 78999999999999998875 378899998653 1 11
Q ss_pred --CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 --SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 --~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++||+|++..... . ...+++++.++|||||++++.+..
T Consensus 129 ~~~~~fD~v~~d~~~~---~---~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 129 EKYEPFDFIFIDADKQ---N---NPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp TTCCCCSEEEECSCGG---G---HHHHHHHHHHTCCTTCEEEEESCS
T ss_pred cCCCCcCEEEEcCCcH---H---HHHHHHHHHHhcCCCcEEEEeCCC
Confidence 26799999876532 2 578999999999999988887544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.1e-12 Score=111.59 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=78.5
Q ss_pred HHHHHh-CCCCCCEEEEECCccCccccc----CC------CceEEEEeCCHHHHHHHHHc------------CCeEEEee
Q 017080 113 VATFLN-SLPSGSLVLDAGCGNGKYLGL----NP------DCFFVGCDISPSLIKICVDR------------GHEVLVAD 169 (377)
Q Consensus 113 ~~~~l~-~~~~~~~vLDiGcG~G~~~~~----~~------~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d 169 (377)
+...+. .+.++.+|||||||+|.++.. .. ..+|+++|+++.+++.++++ ++.+..+|
T Consensus 74 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 153 (227)
T 1r18_A 74 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD 153 (227)
T ss_dssp HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred HHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC
Confidence 344443 467889999999999997532 22 35999999999999988764 47889999
Q ss_pred CCCCCCCC-CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 170 AVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 170 ~~~~~~~~-~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.. ++++ ++||+|++..+++|+. +++.+.|||||++++....
T Consensus 154 ~~~-~~~~~~~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 154 GRK-GYPPNAPYNAIHVGAAAPDTP---------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GGG-CCGGGCSEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEESC
T ss_pred ccc-CCCcCCCccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEec
Confidence 887 4444 7899999999998875 4688999999999998754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=113.57 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=82.0
Q ss_pred HHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
.+..+.++.+|||+|||+|.++. ..+..+|+|+|+|+.+++.|+++ ++.++.+|+.+++. .++||+|+
T Consensus 113 ~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi 191 (272)
T 3a27_A 113 MAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVI 191 (272)
T ss_dssp HHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEE
T ss_pred HHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEE
Confidence 34557788999999999999753 24567999999999999999875 46899999988743 67899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+.... + ...++.++.+.|||||+++++++..
T Consensus 192 ~d~p~----~---~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 192 MGYVH----K---THKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ECCCS----S---GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCcc----c---HHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 97654 3 5689999999999999999988754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=119.48 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=74.3
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHH-------HHc---------CCeEEEeeCCCC--CC-
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKIC-------VDR---------GHEVLVADAVNL--PY- 175 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a-------~~~---------~~~~~~~d~~~~--~~- 175 (377)
.+.++.+|||||||+|.++. ..+..+|+|+|+|+.+++.| +++ +++++.+|.... ++
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence 45688999999999999753 23556899999999998888 543 356677654422 22
Q ss_pred -CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 176 -RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 176 -~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..++||+|++..++ +.++ +..+|+++.++|||||.+++.+.
T Consensus 319 ~~~~~FDvIvvn~~l-~~~d---~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL-FDED---LNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp HHGGGCSEEEECCTT-CCHH---HHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccCCCCEEEEeCcc-cccc---HHHHHHHHHHhCCCCeEEEEeec
Confidence 25789999998766 3333 78899999999999999998753
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-12 Score=121.04 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=76.2
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCCC----CCCceeEEE
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLPY----RSDFGDAAI 184 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~~~~----~~~~fD~V~ 184 (377)
..++.+|||+|||+|.++.. ..+++|+++|+|+.+++.|+++ + ++++++|+.++.. ..++||+|+
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred cCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 34678999999999997532 3456999999999999999876 2 6788899877431 156899999
Q ss_pred eccc----------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAV----------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~----------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.-. +++..+ ...+++++.++|||||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~---~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDH---LPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHH---HHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHH---HHHHHHHHHHhcCcCcEEEEEECC
Confidence 9422 223333 779999999999999998887644
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=116.72 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=74.9
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc------------------CCeEEEeeCCCC--
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR------------------GHEVLVADAVNL-- 173 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~------------------~~~~~~~d~~~~-- 173 (377)
.+.++.+|||+|||+|.++. . .+..+|+|+|+++.+++.|+++ ++++..+|+.+.
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 46788999999999999753 2 4668999999999999998874 478899999886
Q ss_pred CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 174 ~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++++++||+|++. +++ +..+++++.++|||||.+++..+..
T Consensus 182 ~~~~~~fD~V~~~-----~~~---~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 182 DIKSLTFDAVALD-----MLN---PHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp ------EEEEEEC-----SSS---TTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ccCCCCeeEEEEC-----CCC---HHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 4667789999984 344 4568999999999999999887653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-12 Score=112.83 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=78.5
Q ss_pred HHHHHhCCCCCCEEEEECCccCccc----ccCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CCC
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRS 177 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~~~ 177 (377)
++..+....++.+|||||||+|..+ ...+ +.+|+++|+|+.+++.++++ +++++++|+.+. + +..
T Consensus 55 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (225)
T 3tr6_A 55 LLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIH 134 (225)
T ss_dssp HHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhh
Confidence 3334444456789999999999964 2344 78999999999999999876 378899998653 2 111
Q ss_pred ----CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 178 ----DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 178 ----~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++||+|++... ..+ ...+++++.++|||||++++.+..
T Consensus 135 ~~~~~~fD~v~~~~~---~~~---~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 135 AGQAWQYDLIYIDAD---KAN---TDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp TTCTTCEEEEEECSC---GGG---HHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccCCCCccEEEECCC---HHH---HHHHHHHHHHhcCCCcEEEEeCCC
Confidence 78999997653 222 678999999999999999997654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=111.15 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=75.5
Q ss_pred CCCCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCC-ceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSD-FGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~-~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++.. .+ .+|+|+|+|+.+++.++++ ++.+..+|+ ..+++++ +||+|++.
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~ 165 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVT 165 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEEC
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEEC
Confidence 466788999999999997532 33 7999999999999999875 477888887 3344444 59999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.+++++++ ++.+.|||||++++.....
T Consensus 166 ~~~~~~~~---------~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 166 AGAPKIPE---------PLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp SBBSSCCH---------HHHHTEEEEEEEEEEECSS
T ss_pred CcHHHHHH---------HHHHhcCCCcEEEEEEecC
Confidence 99988763 5789999999999998654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=116.75 Aligned_cols=104 Identities=16% Similarity=0.064 Sum_probs=83.0
Q ss_pred hCCCCCCEEEEECCccCccccc----C-CCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~----~-~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
....++.+|||+|||+|.++.. . +...++|+|+|+.+++.|+++ ++++.++|+.+++.+.++||+|++
T Consensus 199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~ 278 (354)
T 3tma_A 199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA 278 (354)
T ss_dssp TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence 3456788999999999997532 3 778999999999999999987 489999999998877788999999
Q ss_pred ccchhhcCC-h----HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLST-E----SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~-~----~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+-....... . +....+++++.++|||||.+++.++.
T Consensus 279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 654432111 0 11368999999999999999998764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-11 Score=112.49 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=78.9
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
.+.++.+|||+|||+|.++. . .++.+|+++|+|+.+++.|+++ ++.+..+|+.+. +++++||+|++
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~ 187 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL 187 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE
Confidence 46788999999999998642 2 5678999999999999999876 367888898876 56788999998
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.++ +..+++++.++|+|||.+++.++.
T Consensus 188 -----~~~~---~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 188 -----DVPD---PWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp -----CCSC---GGGTHHHHHHHEEEEEEEEEEESS
T ss_pred -----CCcC---HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3566 668999999999999999998754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=109.05 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=77.7
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++.+|||+|||+|.++.. ..+.+|+++|+|+.+++.|+++ ++++..+|+.+..+++++||+|++
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~--- 164 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV--- 164 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE---
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEE---
Confidence 456889999999999986532 1177999999999999999875 467888888875435778999998
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.++ +..+++++.++|||||.+++..+.
T Consensus 165 --~~~~---~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 165 --DVRE---PWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp --CSSC---GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred --CCcC---HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3455 668999999999999999998865
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-11 Score=104.09 Aligned_cols=92 Identities=22% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
..++.+|||+|||+|.++.. .+..+|+|+|+|+.+++.++++ +++++++|+.+++ ++||+|++...++|+.+
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 44678999999999997532 3334799999999999999988 6999999999874 78999999999999875
Q ss_pred hHHHHHHHHHHHHccccCcEEEEE
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.. ...+++++.+++ |+ +++.
T Consensus 126 ~~-~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 126 HS-DRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp ---CHHHHHHHHHHE--EE-EEEE
T ss_pred ch-hHHHHHHHHHhc--Cc-EEEE
Confidence 32 357899999998 44 4444
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-12 Score=117.61 Aligned_cols=103 Identities=17% Similarity=0.066 Sum_probs=78.3
Q ss_pred HHHHHhCCCCCCEEEEECCccCccc----ccC-CCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCC--
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYL----GLN-PDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYR-- 176 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~----~~~-~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~-- 176 (377)
++..+....++.+|||||||+|..+ ... ++.+|+++|+|+.+++.|+++ +++++++|+.+. +..
T Consensus 51 ~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~ 130 (242)
T 3r3h_A 51 FMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLN 130 (242)
T ss_dssp HHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhh
Confidence 3333434456789999999999864 223 478999999999998777765 478999998763 211
Q ss_pred ---CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 ---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 ---~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++||+|++... ..+ ...+++++.++|||||++++.+..
T Consensus 131 ~~~~~~fD~V~~d~~---~~~---~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 131 EGGEHQFDFIFIDAD---KTN---YLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp HHCSSCEEEEEEESC---GGG---HHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccCCCCEeEEEEcCC---hHH---hHHHHHHHHHhcCCCeEEEEECCc
Confidence 478999998764 222 678999999999999999997654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=112.55 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=78.4
Q ss_pred HHHHHhCCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C--
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-- 175 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~-- 175 (377)
++..+....++.+|||||||+|..+. ..+ +.+|+++|+|+.+++.|+++ +++++.+|+.+. + +
T Consensus 70 ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~ 149 (247)
T 1sui_A 70 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIK 149 (247)
T ss_dssp HHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHh
Confidence 33333344567899999999998642 234 78999999999999999875 367899998763 3 2
Q ss_pred ---CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 176 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 176 ---~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++++||+|++... ..+ ...+++++.++|||||++++.+.
T Consensus 150 ~~~~~~~fD~V~~d~~---~~~---~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 150 DEKNHGSYDFIFVDAD---KDN---YLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp SGGGTTCBSEEEECSC---STT---HHHHHHHHHHHBCTTCCEEEECT
T ss_pred ccCCCCCEEEEEEcCc---hHH---HHHHHHHHHHhCCCCeEEEEecC
Confidence 2578999998754 233 67899999999999999988753
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=118.53 Aligned_cols=96 Identities=21% Similarity=0.172 Sum_probs=73.6
Q ss_pred CCCCEEEEECCccCcccc--cCCC-ceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~-~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
-+|++|||||||+|.++- ...| .+|+|||.|+ +++.|++. .+.++.+|++++.++ ++||+|++-.+-
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 368899999999999753 2334 4899999996 67777654 478999999998775 689999995544
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
..+..+.....++....++|||||.++-.
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCc
Confidence 44443322788999999999999987653
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-11 Score=111.38 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=79.6
Q ss_pred HHhCCCCCCEEEEECCccCcccc----cCCC-ceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC----CCCc
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY----RSDF 179 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~----~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~~~ 179 (377)
.+....++.+|||+|||+|..+. ..++ .+|+|+|+|+.+++.++++ ++.++.+|+..++. ..++
T Consensus 77 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~ 156 (274)
T 3ajd_A 77 IVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIF 156 (274)
T ss_dssp HHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCC
T ss_pred HHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcccc
Confidence 33456788999999999999652 2355 7999999999999998876 47788889877653 2678
Q ss_pred eeEEEec------cchhh------------cCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 180 GDAAISI------AVLHH------------LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 180 fD~V~~~------~~l~h------------~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
||+|++. +++.+ ... ...+|+++.++|||||.+++++.+.
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLR---QKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEEEECCC------------HHHHTGGGTC---HHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHH---HHHHHHHHHHhCCCCCEEEEEECCC
Confidence 9999986 22221 123 5789999999999999999987654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-11 Score=112.97 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=76.5
Q ss_pred CEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC--CCCCCceeEEEeccchh
Q 017080 124 SLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAVLH 190 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~--~~~~~~fD~V~~~~~l~ 190 (377)
.+|||||||+|.++.. .|+.+|++||+++.+++.|+++ +++++++|+..+ .+++++||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999997642 6888999999999999999986 478899998764 24578999999964333
Q ss_pred hcCChH-HHHHHHHHHHHccccCcEEEEEEcC
Q 017080 191 HLSTES-RRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 191 h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.-.... ....++++++++|||||++++....
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 211110 0158999999999999999988753
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=114.82 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=83.1
Q ss_pred HhCCCCCCEEEEECCccCcccc----cCCC-ceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeE
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDA 182 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~----~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~ 182 (377)
+....++.+|||+|||+|..+. ..++ ..|+++|+|+.+++.++++ ++.+.++|+..++ +++++||+
T Consensus 254 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 254 VLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEE
T ss_pred hcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCE
Confidence 3456788999999999998642 2444 7999999999999988876 4678889998876 55578999
Q ss_pred EEe------ccchhhcCChH------H-------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 183 AIS------IAVLHHLSTES------R-------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 183 V~~------~~~l~h~~~~~------~-------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
|++ .+++++.++.. + ...+|+++.++|||||.+++++.+..
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 996 44555555421 0 15789999999999999999987654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=108.14 Aligned_cols=101 Identities=21% Similarity=0.177 Sum_probs=77.0
Q ss_pred HHHhCCCCCCEEEEECCccCccc----ccCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC----CCCCC
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVN----LPYRS 177 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~----~~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~----~~~~~ 177 (377)
..+....++.+|||||||+|..+ ...+ +.+|+++|+|+.+++.|+++ ++++..+|+.+ ++..+
T Consensus 65 ~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~ 144 (232)
T 3cbg_A 65 GLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGK 144 (232)
T ss_dssp HHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSS
T ss_pred HHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC
Confidence 33333446789999999999864 2233 67999999999999999875 37788888754 22223
Q ss_pred --CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 178 --DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 178 --~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++||+|++.... .+ ...+++++.++|||||++++.+..
T Consensus 145 ~~~~fD~V~~d~~~---~~---~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 145 PLPEFDLIFIDADK---RN---YPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp SCCCEEEEEECSCG---GG---HHHHHHHHHHTEEEEEEEEEECTT
T ss_pred CCCCcCEEEECCCH---HH---HHHHHHHHHHHcCCCeEEEEeCCC
Confidence 789999987652 23 678999999999999999997644
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-11 Score=108.21 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=76.1
Q ss_pred CCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C----------
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---------- 174 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~---------- 174 (377)
.+.++.+|||||||+|.++. ..+ +.+|+++|+|+.+++.|+++ ++.+..+|+.+. +
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 34567899999999999653 234 78999999999999999876 278888887652 2
Q ss_pred ----CCC--CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 175 ----YRS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 175 ----~~~--~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++ ++||+|++..... + ...+++++.++|||||++++.+..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~~---~---~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADKE---N---YPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCGG---G---HHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccccccCCCCCcCEEEEeCCHH---H---HHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 7899999986533 2 568899999999999999997643
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-11 Score=106.87 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=77.6
Q ss_pred HHHHhCCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CCC-
Q 017080 114 ATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRS- 177 (377)
Q Consensus 114 ~~~l~~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~~~- 177 (377)
+..+..+.++.+|||||||+|.++. ..+ +.+|+++|+|+.+++.|+++ +++++.+|+.+. + +.+
T Consensus 61 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~ 140 (229)
T 2avd_A 61 LANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA 140 (229)
T ss_dssp HHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc
Confidence 3333445577899999999998642 234 78999999999999999875 478888888653 1 211
Q ss_pred ---CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 178 ---DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 178 ---~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++||+|++... ..+ ...+++++.++|+|||.+++.+..
T Consensus 141 ~~~~~~D~v~~d~~---~~~---~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 141 GEAGTFDVAVVDAD---KEN---CSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp TCTTCEEEEEECSC---STT---HHHHHHHHHHHEEEEEEEEEECCS
T ss_pred CCCCCccEEEECCC---HHH---HHHHHHHHHHHcCCCeEEEEECCC
Confidence 78999999654 223 678999999999999999987543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=105.23 Aligned_cols=98 Identities=21% Similarity=0.358 Sum_probs=78.9
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+++..+|||||||+|-++. ..|...|+++|+++.+++.++.+ + .++.+.|...-+ +.++||+|++.-+
T Consensus 129 ~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkt 207 (281)
T 3lcv_B 129 HLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKT 207 (281)
T ss_dssp GSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTC
T ss_pred ccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHH
Confidence 45667899999999999863 35888999999999999999887 3 456777776644 5778999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++|+.+.. ....+ ++.+.|+|+|.++-..
T Consensus 208 i~~Le~q~-kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 208 LPCLETQQ-RGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHHHHS-TTHHH-HHHHHSSCSEEEEEEE
T ss_pred HHHhhhhh-hHHHH-HHHHHhCCCCEEEecc
Confidence 99998754 33555 9999999998766553
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=108.06 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=71.7
Q ss_pred CCCCCCEEEEECC------ccCc-cc-ccCC-CceEEEEeCCHHHHHHHHHcCCeE-EEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGC------GNGK-YL-GLNP-DCFFVGCDISPSLIKICVDRGHEV-LVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGc------G~G~-~~-~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.++++.+|||+|| |+|. .+ ...+ +.+|+|+|+|+. + .++++ +++|+.+++++ ++||+|++...
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v-----~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~ 132 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V-----SDADSTLIGDCATVHTA-NKWDLIISDMY 132 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B-----CSSSEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C-----CCCEEEEECccccCCcc-CcccEEEEcCC
Confidence 4678899999999 4464 22 2233 689999999998 2 36999 99999987753 78999999754
Q ss_pred hh--------hcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LH--------HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~--------h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+ +....+....+++++.++|||||.+++.++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 22 1111122568999999999999999998754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=110.67 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC--CCCCCceeE
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL--PYRSDFGDA 182 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~--~~~~~~fD~ 182 (377)
.+++.+|||||||+|.++. ..+..+|+++|+|+.+++.|+++ +++++++|+.++ ..++++||+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3566899999999999653 24567999999999999998864 477899998763 234678999
Q ss_pred EEeccchhhcCChH-HHHHHHHHHHHccccCcEEEEEE
Q 017080 183 AISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 183 V~~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
|++.....+-.... ....+++++.++|||||++++..
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99965421111100 02689999999999999999873
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=103.83 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCCCCEEEEECCccCcccc-cCCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGNGKYLG-LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~-~~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
..++.+|||||||+|.++- ..+...|+|+|+++.+++.++++ + ..+.++|....+. .++||+|++.-++||+
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~-~~~~DvvLllk~lh~L 181 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP-AEAGDLALIFKLLPLL 181 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC-CCBCSEEEEESCHHHH
T ss_pred CCCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC-CCCcchHHHHHHHHHh
Confidence 3567899999999999864 24888999999999999999887 3 4578889887665 4589999999999999
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.+.+ ....+ ++.+.|+++|.++-.
T Consensus 182 E~q~-~~~~~-~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 182 EREQ-AGSAM-ALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHS-TTHHH-HHHHHCBCSEEEEEE
T ss_pred hhhc-hhhHH-HHHHHhcCCCEEEEc
Confidence 7754 33444 888899998664443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-11 Score=114.59 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=72.0
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeC----CHHHHHHHHH-----cCCeEEEe-eCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDI----SPSLIKICVD-----RGHEVLVA-DAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~----s~~~~~~a~~-----~~~~~~~~-d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++.. .. .+|+|+|+ ++.+++.... .++.++++ |+..++ .++||+|+|.
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd 155 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCD 155 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEEC
Confidence 356789999999999998642 22 58999999 5644322211 24778888 887765 5789999997
Q ss_pred cchh---hcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 187 AVLH---HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 187 ~~l~---h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.+++ +..+......+|.++.++|||||.+++..+...
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~ 195 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 195 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 7653 333321112589999999999999999776543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=111.93 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=82.7
Q ss_pred hCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--~~~~~fD~V~~ 185 (377)
....++.+|||+|||+|..+. ..++..|+|+|+|+.+++.++++ ++.++.+|+..++ +++++||+|++
T Consensus 242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 321 (429)
T 1sqg_A 242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 321 (429)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEE
Confidence 356788999999999999642 35568999999999999988876 4788899998875 55688999996
Q ss_pred ------ccchhhcCChH------H-------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 186 ------IAVLHHLSTES------R-------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 186 ------~~~l~h~~~~~------~-------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.+++++.++.. + ...+|+++.++|||||.+++++.+..
T Consensus 322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 34555555411 0 14889999999999999999986543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-11 Score=107.21 Aligned_cols=102 Identities=20% Similarity=0.135 Sum_probs=77.6
Q ss_pred HHHHHhCCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C--
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-- 175 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~-- 175 (377)
+...+....++.+|||||||+|..+. ..+ +.+|+++|+|+.+++.|+++ +++++.+|+.+. + +
T Consensus 61 ~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~ 140 (237)
T 3c3y_A 61 LMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQ 140 (237)
T ss_dssp HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence 33443344567899999999998642 234 78999999999999999875 367888888653 2 2
Q ss_pred ---CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 176 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 176 ---~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++++||+|++.... .+ ...+++++.++|||||++++.+.
T Consensus 141 ~~~~~~~fD~I~~d~~~---~~---~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 141 GQESEGSYDFGFVDADK---PN---YIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp STTCTTCEEEEEECSCG---GG---HHHHHHHHHHHEEEEEEEEEECT
T ss_pred ccCCCCCcCEEEECCch---HH---HHHHHHHHHHhcCCCeEEEEecC
Confidence 25789999986432 22 67899999999999999988653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.9e-11 Score=110.65 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=76.3
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCC-CCCCCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVN-LPYRSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~-~~~~~~~fD~V 183 (377)
+++.+|||||||+|.++. ..+..+|+++|+++.+++.|+++ +++++.+|+.. ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 456899999999999753 24567999999999999998764 36788898876 33446889999
Q ss_pred Eeccchhh---cCChHH-HHHHHHHHHHccccCcEEEEEEc
Q 017080 184 ISIAVLHH---LSTESR-RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 184 ~~~~~l~h---~~~~~~-~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++....++ -+.... ...+++++.++|||||++++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99765543 111000 26899999999999999999753
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.9e-11 Score=108.70 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=76.0
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
+++.+|||||||+|.++. ..+..+|+++|+++.+++.|+++ +++++.+|+.+. +..+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 456899999999999754 24567999999999999999875 357888888763 22367899999
Q ss_pred eccchhhcCChHHH--HHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~--~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+....++.+... . ..+++++.++|||||.+++...
T Consensus 157 ~d~~~~~~~~~~-l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSSDPIGPAET-LFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECCCTTTGGGG-GSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchh-hhHHHHHHHHHHhcCCCcEEEEECC
Confidence 965433222211 2 6899999999999999998754
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=107.90 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=74.3
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCC-CCCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~-~~~~~~~fD~V~ 184 (377)
+++.+|||||||+|.++. ..+..+|+++|+++.+++.|+++ +++++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 456899999999999753 24567999999999999998864 36788888866 334468899999
Q ss_pred eccchhhcCChH-HHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+....+..+... ....+++++.++|||||++++....
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 965433222100 0257899999999999999997643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=110.20 Aligned_cols=109 Identities=9% Similarity=0.077 Sum_probs=76.9
Q ss_pred HHHhCC-CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCC-CCCCceeEEE
Q 017080 115 TFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLP-YRSDFGDAAI 184 (377)
Q Consensus 115 ~~l~~~-~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~-~~~~~fD~V~ 184 (377)
.++..+ .+|.+|||+|||+|.++.. ..++.|+++|+|+.+++.++++ + .++.++|+.++. ...+.||+|+
T Consensus 206 ~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 206 RLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp HHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEE
T ss_pred HHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEE
Confidence 344443 4589999999999997632 3466799999999999999887 3 357788887642 2234499999
Q ss_pred eccchhhcCC------hHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 185 SIAVLHHLST------ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 185 ~~~~l~h~~~------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+.-....-.. ......+++.+.++|||||.+++.+....
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 8643211000 01156899999999999999997765543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.8e-10 Score=108.17 Aligned_cols=94 Identities=13% Similarity=-0.015 Sum_probs=75.9
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCC-CCCceeEEEecc
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPY-RSDFGDAAISIA 187 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~-~~~-~~~~fD~V~~~~ 187 (377)
.++.+|||+| |+|.++. ..+..+|+|+|+|+.+++.|+++ +++++.+|+.+ +|. .+++||+|++..
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 3578999999 9999753 25567999999999999999886 47899999988 663 457899999987
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEE-EEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLV-LITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l-~i~~ 219 (377)
.+++. . ...+++++.++|||||.+ ++..
T Consensus 250 p~~~~-~---~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 250 PETLE-A---IRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CSSHH-H---HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCchH-H---HHHHHHHHHHHcccCCeEEEEEE
Confidence 66543 2 478999999999999954 4444
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=106.57 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=75.3
Q ss_pred CCCCEEEEECCccCccccc---C-CCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCC-CCCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~-~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~-~~~~~~~fD~V~ 184 (377)
+.+.+|||||||+|.++.. . +..+|+++|+++.+++.|+++ +++++.+|+.. ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4568999999999997542 3 457999999999999999874 36788999876 333467899999
Q ss_pred eccchhhcCChH-HHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+....++.+... ....+++++.++|||||++++...
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 965433221100 015799999999999999998753
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-10 Score=110.04 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=75.0
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
+++.+|||||||+|.++. ..+..+|+++|+|+.+++.|+++ +++++.+|+.+. +..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 456899999999999753 23568999999999999999875 367888887653 33367899999
Q ss_pred eccchhhcCChHHH--HHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~h~~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+...- ++...... ..+++++.++|||||++++...+
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 86532 11110001 68999999999999999997543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=104.66 Aligned_cols=94 Identities=20% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCce---eEEEec
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFG---DAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~f---D~V~~~ 186 (377)
++.+|||+|||+|.++ .. ++.+|+|+|+|+.+++.|+++ +++++++|+.+. + .++| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~-~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F-KEKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G-GGGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c-ccccCCCCEEEEc
Confidence 5679999999999964 34 788999999999999999886 278999999873 2 2578 999997
Q ss_pred ------------cchhhcCCh-----HHHHHHHHHHH-HccccCcEEEEEE
Q 017080 187 ------------AVLHHLSTE-----SRRKKAIEELV-RVVKKGSLVLITV 219 (377)
Q Consensus 187 ------------~~l~h~~~~-----~~~~~~l~~~~-r~LkpgG~l~i~~ 219 (377)
.+. |-+.. .+...+++++. +.|+|||++++..
T Consensus 200 PPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 222 22210 00237899999 9999999999864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-10 Score=106.50 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=72.8
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCC-CCCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~-~~~~~~~fD~V~ 184 (377)
+.+.+|||||||+|.++. ..+..+|+++|+|+.+++.|+++ +++++.+|+.. ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 456899999999999753 23567999999999999998864 36788888766 344467899999
Q ss_pred eccchhhcCChHH--HHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~--~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+...-+++..... ...+++++.++|||||++++...
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 8543221211000 26899999999999999999753
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-10 Score=111.89 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=78.2
Q ss_pred CCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCceeEEEec--
Q 017080 122 SGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISI-- 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~~~~fD~V~~~-- 186 (377)
++.+|||+|||+|..+. . .+...|+++|+|+.+++.++++ ++.+.++|+..++. .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 88999999999998642 2 3457999999999999998876 46788889887653 46789999982
Q ss_pred ----cchhhcCCh-------------HHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 187 ----AVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 187 ----~~l~h~~~~-------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+++.+.++. .....+|+++.++|||||+|++++.+..
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 344433321 0124789999999999999999886543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=108.30 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=71.3
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCC-CCCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~-~~~~~~~fD~V~ 184 (377)
+++.+|||||||+|.++. ..+..+|+++|+|+.+++.|+++ +++++.+|+.. ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 456799999999999653 24568999999999999999875 25678888765 233467899999
Q ss_pred eccchhhcCChHHH--HHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+... .++...... ..+++++.++|+|||++++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654 333221111 689999999999999999875
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.8e-11 Score=109.89 Aligned_cols=94 Identities=24% Similarity=0.309 Sum_probs=67.9
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++.+|+.+++++ +||+|+++..
T Consensus 25 ~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlp 102 (285)
T 1zq9_A 25 ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLP 102 (285)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECC
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecC
Confidence 356788999999999998643 2356999999999999998875 468899999887654 7999999644
Q ss_pred hhhcCChHHHHHHH--------------HHH--HHccccCcEEE
Q 017080 189 LHHLSTESRRKKAI--------------EEL--VRVVKKGSLVL 216 (377)
Q Consensus 189 l~h~~~~~~~~~~l--------------~~~--~r~LkpgG~l~ 216 (377)
.+...+ . ...++ +|+ +++|+|||.++
T Consensus 103 y~~~~~-~-~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 103 YQISSP-F-VFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp GGGHHH-H-HHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cccchH-H-HHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 332221 0 11222 233 36899999863
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-10 Score=104.85 Aligned_cols=88 Identities=8% Similarity=-0.104 Sum_probs=71.5
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+.+.+|||||||+|.++. ..+ .+|+++|+++.+++.|+++ +++++.+|+..+. ++||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 456799999999998653 235 8999999999999988754 3677888887754 789999986
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..+ +..+++++.++|||||++++...
T Consensus 147 -----~~d---p~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 147 -----QEP---DIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp -----SCC---CHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -----CCC---hHHHHHHHHHhcCCCcEEEEEcC
Confidence 345 45699999999999999998743
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=94.38 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=72.5
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
..++.+|||+|||+|.++.. ....+|+|+|+|+.+++.++++ +++++.+|+.+++ ++||+|++.-.++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 34678999999999997532 3334899999999999999987 4788999998864 4899999998887
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+..... ...+++++.+++ || +++..
T Consensus 124 ~~~~~~-~~~~l~~~~~~l--~~-~~~~~ 148 (207)
T 1wy7_A 124 SQRKHA-DRPFLLKAFEIS--DV-VYSIH 148 (207)
T ss_dssp SSSTTT-THHHHHHHHHHC--SE-EEEEE
T ss_pred cccCCc-hHHHHHHHHHhc--Cc-EEEEE
Confidence 765322 467899999998 54 44443
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-10 Score=111.79 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=79.7
Q ss_pred HhCCCCCCEEEEECCccCcccc----cC-CCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCC-CCCCceeEEE
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLP-YRSDFGDAAI 184 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~----~~-~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~-~~~~~fD~V~ 184 (377)
+....++.+|||+|||+|..+. .. ....|+++|+|+.+++.++++ + +.+..+|+..++ ..+++||+|+
T Consensus 96 ~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 96 LLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEE
T ss_pred hcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEE
Confidence 3456788999999999998542 23 447999999999999999886 3 667778877765 3468899999
Q ss_pred e------ccchhhcCCh-------------HHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 185 S------IAVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 185 ~------~~~l~h~~~~-------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+ .+++.+-++. .....+|+++.++|||||+|++++-+..
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 5 2334333331 0026899999999999999999876544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=111.76 Aligned_cols=106 Identities=15% Similarity=0.110 Sum_probs=80.6
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC----CCCc
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY----RSDF 179 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~~~ 179 (377)
....+..+ ++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ +++++++|+.++.. .+++
T Consensus 201 ~~~~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~ 279 (382)
T 1wxx_A 201 NRLYMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGER 279 (382)
T ss_dssp HHHHGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred HHHHHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCC
Confidence 34455566 788999999999997532 1256999999999999999886 37899999877431 2578
Q ss_pred eeEEEeccc---------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 180 GDAAISIAV---------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 180 fD~V~~~~~---------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
||+|++.-. ..+..+ ...++.++.++|+|||.+++++...
T Consensus 280 fD~Ii~dpP~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 280 FDLVVLDPPAFAKGKKDVERAYRA---YKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHH---HHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred eeEEEECCCCCCCChhHHHHHHHH---HHHHHHHHHHhcCCCCEEEEEECCC
Confidence 999998432 122222 6789999999999999999987653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-10 Score=106.35 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=72.6
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCC-CCCCCc
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNL-PYRSDF 179 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~-----------------~~~~~~~d~~~~-~~~~~~ 179 (377)
+++.+|||||||+|.++. ..+..+|+++|+++.+++.|+++ +++++.+|+.+. +. +++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 456899999999998653 23567999999999999998864 256778887552 22 678
Q ss_pred eeEEEeccchhhcCChHH-HHHHHHHHHHccccCcEEEEEEc
Q 017080 180 GDAAISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~-~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
||+|++....+.-+.... ...+++++.++|+|||++++...
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 999998655322111100 16789999999999999998753
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-10 Score=110.42 Aligned_cols=98 Identities=17% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCC----CCCceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY----RSDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~----~~~~fD~V~~~ 186 (377)
++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ +++++.+|+.++.. ..++||+|++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 788999999999997532 3334999999999999999876 46789999876421 25789999994
Q ss_pred cc---------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AV---------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~---------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
-. .++..+ ...++.++.++|+|||.+++++.+.
T Consensus 297 pP~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRA---YFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCSCSSGGGHHHHHHH---HHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCHHHHHHHHHH---HHHHHHHHHHhcCCCcEEEEEECCC
Confidence 32 222233 6789999999999999999887654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-10 Score=117.26 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=81.0
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCC-CCCCC
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVN-LPYRS 177 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~-~~~~~ 177 (377)
+....++..+.+|.+|||+|||+|.++-. ..++ +|+++|+|+.+++.++++ +++++++|+.+ ++...
T Consensus 528 r~~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~ 607 (703)
T 3v97_A 528 RIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREAN 607 (703)
T ss_dssp HHHHHHHHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcC
Confidence 33334444445789999999999997532 2344 699999999999999986 26789999887 34446
Q ss_pred CceeEEEecc-----------chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 178 DFGDAAISIA-----------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 178 ~~fD~V~~~~-----------~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++||+|++.- ++.+..+ ...++.++.++|+|||.+++++-
T Consensus 608 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~---~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 608 EQFDLIFIDPPTFSNSKRMEDAFDVQRD---HLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CCEEEEEECCCSBC-------CCBHHHH---HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCccEEEECCccccCCccchhHHHHHHH---HHHHHHHHHHhcCCCcEEEEEEC
Confidence 7899999854 2333333 77899999999999999998764
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=110.35 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=75.2
Q ss_pred CCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC-C-C--CCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P-Y--RSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~-~-~--~~~~fD~V~ 184 (377)
.++.+|||+|||+|.++.. ..++ +|+|+|+|+.+++.|+++ +++++++|+.+. + . ..++||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 6788999999999997532 2244 899999999999999876 357899998763 2 1 245899999
Q ss_pred eccch-----hhcCCh-HHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 185 SIAVL-----HHLSTE-SRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 185 ~~~~l-----~h~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+.-.. .++.+. .....+++++.++|+|||.++++....
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 84322 233331 115568888999999999999987543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-10 Score=101.44 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=76.3
Q ss_pred hCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
..+.+|.+|||+|||+|.++- ....++|+++|+||.+++.++++ .+.++.+|+.+++ +.+.||.|++.
T Consensus 121 ~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~ 199 (278)
T 3k6r_A 121 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMG 199 (278)
T ss_dssp HHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred HhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEEC
Confidence 346789999999999999863 24446999999999999999887 3678899998875 36789999976
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.. +. ...+|..+.++|||||++.+....
T Consensus 200 ~p----~~---~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 200 YV----VR---THEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp CC----SS---GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred CC----Cc---HHHHHHHHHHHcCCCCEEEEEeee
Confidence 32 22 346788888999999998877654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=105.25 Aligned_cols=98 Identities=21% Similarity=0.109 Sum_probs=74.5
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
..++.+|||+|||+|.++. ..+..+|+|+|+|+.|++.|+++ ++++.++|+.++++++++||+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 5678899999999999753 24445999999999999999986 47899999999988889999999975
Q ss_pred chhhcC----Ch-HHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLS----TE-SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~----~~-~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.++.-. .. +....+++++.++| ||.+++..
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 543211 11 11367889999988 55555554
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=103.84 Aligned_cols=101 Identities=22% Similarity=0.221 Sum_probs=79.9
Q ss_pred CCCCCEEEEECCccCccccc----CC-----CceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 120 LPSGSLVLDAGCGNGKYLGL----NP-----DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~----~~-----~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
..++.+|||+|||+|.++.. .+ ...++|+|+++.+++.|+.+ ++.+..+|.... .+.++||+|+
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii 206 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVI 206 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEE
Confidence 34567999999999997531 22 27899999999999999886 478889998763 3467899999
Q ss_pred eccchhhcCChHHH---------------HHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLHHLSTESRR---------------KKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~h~~~~~~~---------------~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++-.+++++..+.. ..+++++.+.|||||++++..+.
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 99888777653311 26899999999999999998754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.96 E-value=6e-10 Score=108.34 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=75.9
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCCC----CCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLPY----RSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~~~~----~~~~fD~V~ 184 (377)
.++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ + ++++.+|+.++.. ..++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 5788999999999997532 2245999999999999998875 3 4688899876421 146899999
Q ss_pred eccc---------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 185 SIAV---------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 185 ~~~~---------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+.-. ..+... ...++.++.+.|+|||++++++...
T Consensus 299 ~dpP~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRG---YKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTH---HHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHH---HHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9632 222233 7789999999999999999987543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.2e-10 Score=108.38 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCceeE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDA 182 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~~fD~ 182 (377)
.+....++.+|||+|||+|..+ .. .....|+++|+|+.+++.++++ ++.+..+|+..++ ..+++||+
T Consensus 99 ~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~ 178 (456)
T 3m4x_A 99 TAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDR 178 (456)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEE
T ss_pred HHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCE
Confidence 3345678899999999999853 22 3457999999999999998876 4667778887754 34688999
Q ss_pred EEecc------chhhcCCh-------------HHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 183 AISIA------VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 183 V~~~~------~l~h~~~~-------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
|++.. ++.+-++. .....+|.++.++|||||.|+.++-+..
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 99843 22221110 0023789999999999999999876654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-09 Score=101.75 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=76.1
Q ss_pred hCCCCCCEEEEECCccCcccc-cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~-~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..+.++.+|||+|||+|.++. .....+|+|+|+|+.+++.++++ +++++.+|+.++. ++||+|++.-.
T Consensus 191 ~~~~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 191 KKVSLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp HHCCTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred HhcCCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 345678999999999999742 23456999999999999999886 3788999998865 88999998532
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
-. ...++..+.++|+|||.+++..+..
T Consensus 268 ~~-------~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 KF-------AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp TT-------GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred Hh-------HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 11 2378999999999999999987654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.2e-09 Score=96.82 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++.+|+..+++ ++||+|+++...
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~D~Vv~n~py 116 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKFDVCTANIPY 116 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--CCCSEEEEECCG
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--ccCCEEEEcCCc
Confidence 456788999999999998643 3467999999999999998875 47889999988765 489999997554
Q ss_pred h
Q 017080 190 H 190 (377)
Q Consensus 190 ~ 190 (377)
+
T Consensus 117 ~ 117 (299)
T 2h1r_A 117 K 117 (299)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-11 Score=110.39 Aligned_cols=98 Identities=9% Similarity=0.135 Sum_probs=72.4
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC-CceeEEEecc---
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS-DFGDAAISIA--- 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~-~~fD~V~~~~--- 187 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++.+|+.++++++ ++| .|+++-
T Consensus 26 ~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~ 104 (245)
T 1yub_A 26 NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYH 104 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSS
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCcc
Confidence 356788999999999998643 2347999999999999888765 4788999999988764 688 566642
Q ss_pred --------chhhcCChHHHHHHH----HHHHHccccCcEEEEEEc
Q 017080 188 --------VLHHLSTESRRKKAI----EELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 --------~l~h~~~~~~~~~~l----~~~~r~LkpgG~l~i~~~ 220 (377)
++.|... ...++ +.+.|+|+|||.+.+...
T Consensus 105 ~~~~~~~~~~~~~~~---~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 105 LSTQIIKKVVFESRA---SDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SCHHHHHHHHHHCCC---EEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred ccHHHHHHHHhCCCC---CeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 2333333 33455 778999999998777543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-09 Score=98.77 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC-CceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS-DFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~-~~fD~V~~~ 186 (377)
+.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++.+|+.++++++ ..| .|+++
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEE
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEe
Confidence 45678999999999997643 2347999999999999999886 5789999999988764 455 34443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=99.61 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
+.++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.|+++ + ++|+.+|+.++.. .+||+|++.-.-..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAG 365 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTC
T ss_pred cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccc
Confidence 46788999999999997532 2356999999999999999876 3 6899999988642 28999999543221
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ ...+++.+. .|+|||.++++.
T Consensus 366 ~-----~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 L-----HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp S-----CHHHHHHHH-HHCCSEEEEEES
T ss_pred h-----HHHHHHHHH-hcCCCcEEEEEC
Confidence 1 124555554 599999999875
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-08 Score=99.68 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=74.5
Q ss_pred CCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhh----
Q 017080 121 PSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH---- 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h---- 191 (377)
.++.+|||+|||+|.++.. .+..+++|+|+++.+++.| .+++++++|+..++ +.++||+|+++-....
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccc
Confidence 3467999999999997632 2678999999999999877 45889999998864 3578999999522211
Q ss_pred ------cCChH----------------HHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 192 ------LSTES----------------RRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 192 ------~~~~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+.++. ....+++.+.++|+|||.+.+..+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 22211 02267999999999999999988653
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-08 Score=94.51 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=92.8
Q ss_pred CCEEEEECCccCcccc------------c-------CCCceEEEEeCCHHHHHHHHHc-------------------CCe
Q 017080 123 GSLVLDAGCGNGKYLG------------L-------NPDCFFVGCDISPSLIKICVDR-------------------GHE 164 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~------------~-------~~~~~v~gvD~s~~~~~~a~~~-------------------~~~ 164 (377)
+.+|+|+|||+|..+. . .|..+|...|+..+.....-+. +-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5799999999998421 1 2678999999877654222111 112
Q ss_pred EEEeeCC---CCCCCCCceeEEEeccchhhcCChH-----------------------------------HHHHHHHHHH
Q 017080 165 VLVADAV---NLPYRSDFGDAAISIAVLHHLSTES-----------------------------------RRKKAIEELV 206 (377)
Q Consensus 165 ~~~~d~~---~~~~~~~~fD~V~~~~~l~h~~~~~-----------------------------------~~~~~l~~~~ 206 (377)
|..+... .-.+|+++||+|+++.+|||+.+.. ++..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 3358899999999999999997321 3666899999
Q ss_pred HccccCcEEEEEEcCCCccc----hhhhhcc-ccchHHHHhhhhCCC-------CCCcCCCCCCCcccHHhHhh-cCCCc
Q 017080 207 RVVKKGSLVLITVWAVEQED----KSLVTKW-TPLTQKYVEEWIGPG-------SPRVRSPSARTLESIPETED-NGSEE 273 (377)
Q Consensus 207 r~LkpgG~l~i~~~~~~~~~----~~~~~~~-~~~~~~~~~~w~~~~-------~~~~~~~~~~~~~~l~~~l~-~aGF~ 273 (377)
+.|+|||.+++......... ......| ..+... +....... .....+..+.+.+++++.++ +.||.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~a-l~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDA-WDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHH-HHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHH-HHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 99999999999987654321 0000111 111111 11111100 00122344577899999998 59997
Q ss_pred c
Q 017080 274 Q 274 (377)
Q Consensus 274 ~ 274 (377)
+
T Consensus 292 I 292 (374)
T 3b5i_A 292 I 292 (374)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-08 Score=95.59 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=69.2
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC----CCCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN----LPYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~----~~~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ ++.|+.+|+.+ +++++++||+|++.
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 45678999999999997632 3367999999999999999876 47899999987 33556789999985
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-.-.- ...+++.+.+ ++|++.++++.
T Consensus 364 PPr~g------~~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 364 PARAG------AAGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CCTTC------CHHHHHHHHH-HCCSEEEEEES
T ss_pred CCCcc------HHHHHHHHHh-cCCCeEEEEEC
Confidence 32211 1234554443 78999888874
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-08 Score=92.93 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+++.+++.++++ +++++.+|+..+++++.+||.|+++...+
T Consensus 47 ~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 47 NLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQ 125 (295)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred CCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEeCccc
Confidence 456788999999999998643 2367999999999999998875 68999999999888888899999875543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-08 Score=98.14 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=77.3
Q ss_pred CCCCCEEEEECCccCccccc---C--------------CCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---N--------------PDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNL 173 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~--------------~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~ 173 (377)
..++.+|||.|||+|.++.. . +...++|+|+++.+++.|+.+ +..+.++|....
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 45677999999999997521 1 346899999999999999875 346889998876
Q ss_pred CCCCCceeEEEeccchhhcCChH--------------HHHHHHHHHHHccccCcEEEEEEcC
Q 017080 174 PYRSDFGDAAISIAVLHHLSTES--------------RRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 174 ~~~~~~fD~V~~~~~l~h~~~~~--------------~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+. .++||+|+++-.+.+..... ....+++++.++|||||++.+..+.
T Consensus 249 ~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 249 EP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 54 34899999987665533210 0247899999999999999988754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=88.05 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=73.3
Q ss_pred HhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCC---Ccee
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRS---DFGD 181 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~---~~fD 181 (377)
+..+.+|.+|||+|||+|..+. . .+...|+++|+++.+++.++++ ++.++.+|+..++... ++||
T Consensus 97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 176 (309)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCC
Confidence 3456788999999999998542 2 4567999999999999998876 4688899988765322 5799
Q ss_pred EEEec------cchhhcCCh-----------H----HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 182 AAISI------AVLHHLSTE-----------S----RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 182 ~V~~~------~~l~h~~~~-----------~----~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.|++. +++..-++. . ...++|..+.++|+ ||+++.++-+..
T Consensus 177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 99972 233221110 0 01356788888887 999888875543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.8e-08 Score=92.23 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=77.3
Q ss_pred CCCCCCEEEEECCccCccccc--------CCC----------------------------------ceEEEEeCCHHHHH
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--------NPD----------------------------------CFFVGCDISPSLIK 156 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--------~~~----------------------------------~~v~gvD~s~~~~~ 156 (377)
...++.+|||++||+|.++.. .|+ ..|+|+|+++.+++
T Consensus 192 ~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~ 271 (385)
T 3ldu_A 192 PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID 271 (385)
T ss_dssp CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence 446778999999999986421 222 57999999999999
Q ss_pred HHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchh-hcCChHHHHHHHHHHHHcccc--CcEEEEEEcC
Q 017080 157 ICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWA 221 (377)
Q Consensus 157 ~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~-h~~~~~~~~~~l~~~~r~Lkp--gG~l~i~~~~ 221 (377)
.|+.+ .+++.++|+.+++. .++||+|+++-... .+.+.+....+.+++.++||+ ||.+++.+..
T Consensus 272 ~Ar~Na~~~gl~~~i~~~~~D~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 272 IARENAEIAGVDEYIEFNVGDATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp HHHHHHHHHTCGGGEEEEECCGGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred HHHHHHHHcCCCCceEEEECChhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 99987 36899999999865 45899999975543 233223367788888888876 8888888754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=90.52 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=79.0
Q ss_pred hCCCCCCEEEEECCccCcccc--------cCCC----------------------------------ceEEEEeCCHHHH
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG--------LNPD----------------------------------CFFVGCDISPSLI 155 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~--------~~~~----------------------------------~~v~gvD~s~~~~ 155 (377)
....++..|||.+||+|.++. ..|| ..|+|+|+|+.|+
T Consensus 190 ~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al 269 (384)
T 3ldg_A 190 SNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMV 269 (384)
T ss_dssp TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred hCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHH
Confidence 345678899999999999641 1222 4699999999999
Q ss_pred HHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchh-hcCChHHHHHHHHHHHHcccc--CcEEEEEEcC
Q 017080 156 KICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWA 221 (377)
Q Consensus 156 ~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~-h~~~~~~~~~~l~~~~r~Lkp--gG~l~i~~~~ 221 (377)
+.|+++ .+++.++|+.+++.+ ++||+|+++-..+ -+.+.+....+++++.+.||+ ||.+++.+..
T Consensus 270 ~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 270 EIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp HHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred HHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 999987 268999999998754 5899999984432 244444477888888888876 9999888764
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.8e-08 Score=92.45 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=76.4
Q ss_pred hCCCCCCEEEEECCccCcccc--------cCCC----------------------------------ceEEEEeCCHHHH
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG--------LNPD----------------------------------CFFVGCDISPSLI 155 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~--------~~~~----------------------------------~~v~gvD~s~~~~ 155 (377)
....++..|||.+||+|.++. ..|| ..|+|+|+|+.|+
T Consensus 197 ~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al 276 (393)
T 3k0b_A 197 TSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLI 276 (393)
T ss_dssp SCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred hCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHH
Confidence 345678899999999999741 1222 4699999999999
Q ss_pred HHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchh-hcCChHHHHHHHHHHHHcccc--CcEEEEEEcC
Q 017080 156 KICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWA 221 (377)
Q Consensus 156 ~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~-h~~~~~~~~~~l~~~~r~Lkp--gG~l~i~~~~ 221 (377)
+.|+.+ .+++.++|+.+++.+ ++||+|+++-... .+.+.+....+.+++.+.||+ ||.+++.+..
T Consensus 277 ~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 277 EIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp HHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred HHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999987 378999999998754 5899999984332 122222356677777777776 9998888754
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-08 Score=91.14 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=70.5
Q ss_pred CCCCCCEEEEECCccCccccc---C-CCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~-~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||+|||+|.|+.. . +...++|+|++-.+....... ++..+..+++...+++++||+|+|..+.
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~ap 150 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGE 150 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCcc
Confidence 467888999999999999763 2 334788888874431111110 3445566665556778899999998755
Q ss_pred h---hcCChHHHHHHHHHHHHccccC-cEEEEEEcCC
Q 017080 190 H---HLSTESRRKKAIEELVRVVKKG-SLVLITVWAV 222 (377)
Q Consensus 190 ~---h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~~ 222 (377)
+ +..|..+-..+|+.+.++|+|| |.+++-.+.+
T Consensus 151 nsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 151 SSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 4 1122211224578889999999 9999988874
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=86.13 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=54.9
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC----CceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS----DFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~----~~fD~V~~~~ 187 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+++.|++.++++ +++++++|+.++++++ ++|| |+++-
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 26 HPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp CCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred CCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEecC
Confidence 456788999999999998643 3457999999999999999876 5889999999987643 5688 55543
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.9e-07 Score=83.91 Aligned_cols=153 Identities=12% Similarity=0.017 Sum_probs=98.2
Q ss_pred CCCCEEEEECCccCcccc--------------------cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC
Q 017080 121 PSGSLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN 172 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--------------------~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~ 172 (377)
+...+|+|+||++|..+- ..|..+|+..|+..+.....-+. +..|+.+....
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 334689999999998431 13567999999988877666544 22455554444
Q ss_pred ---CCCCCCceeEEEeccchhhcCCh------------------------------HHHHHHHHHHHHccccCcEEEEEE
Q 017080 173 ---LPYRSDFGDAAISIAVLHHLSTE------------------------------SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 173 ---~~~~~~~fD~V~~~~~l~h~~~~------------------------------~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-.+|++++|+|+++.+|||+.+. .++..+|+..++.|+|||++++..
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 46889999999999999998651 134566999999999999999998
Q ss_pred cCCCccchhhhhccccchHHHHhhhh---CC-C------CCCcCCCCCCCcccHHhHhhcCCC-cc
Q 017080 220 WAVEQEDKSLVTKWTPLTQKYVEEWI---GP-G------SPRVRSPSARTLESIPETEDNGSE-EQ 274 (377)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~w~---~~-~------~~~~~~~~~~~~~~l~~~l~~aGF-~~ 274 (377)
......... ......+.......|. .. . .....+..+.+.+++++.+++.|. .+
T Consensus 210 ~gr~~~~~~-~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i 274 (359)
T 1m6e_X 210 LGRRSEDRA-STECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLI 274 (359)
T ss_dssp EECSSSSSS-STTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCC
T ss_pred ecCCCCCcc-ccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceE
Confidence 765433110 0000001111111121 10 0 012234557788999999999855 55
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=86.39 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=58.3
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCC-ceeEEEeccchhh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSD-FGDAAISIAVLHH 191 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~-~fD~V~~~~~l~h 191 (377)
.+.++ +|||||||+|.++.. ..+.+|+|+|+++.|++.++++ +++++.+|+..+++++. .+|.|+++-.. +
T Consensus 44 ~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy-~ 121 (271)
T 3fut_A 44 RPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLPY-H 121 (271)
T ss_dssp CCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEECS-S
T ss_pred CCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecCcc-c
Confidence 45677 999999999998643 3457999999999999999886 58899999999887643 68888876543 3
Q ss_pred cCC
Q 017080 192 LST 194 (377)
Q Consensus 192 ~~~ 194 (377)
+..
T Consensus 122 iss 124 (271)
T 3fut_A 122 IAT 124 (271)
T ss_dssp CCH
T ss_pred ccH
Confidence 443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-07 Score=87.17 Aligned_cols=150 Identities=19% Similarity=0.088 Sum_probs=93.2
Q ss_pred CCEEEEECCccCccc------------cc---------CCCceEEEEeCC-----------HHHHHHHHHc-----CCeE
Q 017080 123 GSLVLDAGCGNGKYL------------GL---------NPDCFFVGCDIS-----------PSLIKICVDR-----GHEV 165 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~------------~~---------~~~~~v~gvD~s-----------~~~~~~a~~~-----~~~~ 165 (377)
..+|+|+||++|..+ .. .|..+|+..|+. +.+.+..++. +..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 579999999999742 11 256799999998 5555544332 2356
Q ss_pred EEeeCCC---CCCCCCceeEEEeccchhhcCChH------------------------------------HHHHHHHHHH
Q 017080 166 LVADAVN---LPYRSDFGDAAISIAVLHHLSTES------------------------------------RRKKAIEELV 206 (377)
Q Consensus 166 ~~~d~~~---~~~~~~~fD~V~~~~~l~h~~~~~------------------------------------~~~~~l~~~~ 206 (377)
+.+.... -.||++++|+|+++.+|||+.+.. ++..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544 358899999999999999987631 1122367779
Q ss_pred HccccCcEEEEEEcCCCcc--c-h---hhhhccccchHH-HHhhhhCCCCCCcCCCCCCCcccHHhHhhcC-CCcc
Q 017080 207 RVVKKGSLVLITVWAVEQE--D-K---SLVTKWTPLTQK-YVEEWIGPGSPRVRSPSARTLESIPETEDNG-SEEQ 274 (377)
Q Consensus 207 r~LkpgG~l~i~~~~~~~~--~-~---~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a-GF~~ 274 (377)
+.|+|||++++........ . . .+...|...... ....- .......+..+.+.+++++.++++ ||.+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~e--k~dsf~~P~y~ps~~E~~~~le~~g~F~i 286 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEE--KLDSFNVPIYAPSTEEVKRIVEEEGSFEI 286 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHH--HHHTCCCSBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchh--hhcccCCcccCCCHHHHHHHHHHcCCceE
Confidence 9999999999998775443 1 0 111112111000 00000 000122234567889999999997 5766
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-07 Score=81.64 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=59.0
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
.+.++.+|||||||+|.++.. .+..+|+|+|+++.+++.++++ +++++.+|+..+++++..-+.++..+.-.++
T Consensus 28 ~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 28 NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKVVGNLPYNV 107 (249)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEEEEECCTTT
T ss_pred CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEEEEECchhc
Confidence 345788999999999997642 3347999999999999999876 5789999999988664221333333333344
Q ss_pred CChHHHHHHHHHHHHc
Q 017080 193 STESRRKKAIEELVRV 208 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~ 208 (377)
.. .++.++.+.
T Consensus 108 ~~-----~il~~ll~~ 118 (249)
T 3ftd_A 108 AS-----LIIENTVYN 118 (249)
T ss_dssp HH-----HHHHHHHHT
T ss_pred cH-----HHHHHHHhc
Confidence 32 445555443
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-07 Score=85.33 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=55.8
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCH-------HHHHHHHHc-------C-CeEEEeeCCCC-C-CCC--
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISP-------SLIKICVDR-------G-HEVLVADAVNL-P-YRS-- 177 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~-------~~~~~a~~~-------~-~~~~~~d~~~~-~-~~~-- 177 (377)
.+.++.+|||+|||+|.++.. ..+++|+|+|+|+ .+++.|+++ + ++++.+|+.++ + +++
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence 345678999999999997532 2467999999999 999888764 3 88999999874 3 444
Q ss_pred CceeEEEeccchhh
Q 017080 178 DFGDAAISIAVLHH 191 (377)
Q Consensus 178 ~~fD~V~~~~~l~h 191 (377)
++||+|++.-++.|
T Consensus 160 ~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 160 GKPDIVYLDPMYPE 173 (258)
T ss_dssp CCCSEEEECCCC--
T ss_pred CCccEEEECCCCCC
Confidence 78999999766555
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-07 Score=90.47 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=65.6
Q ss_pred CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCC--------------
Q 017080 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRS-------------- 177 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~-------------- 177 (377)
+.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ +++|+.+|+.++. +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 57899999999997532 2345999999999999999876 4688999987642 222
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+||+|++.-. ...+..++.+.|+|+|.+++...+
T Consensus 294 ~~fD~Vv~dPP---------r~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 294 YQCETIFVDPP---------RSGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp CCEEEEEECCC---------TTCCCHHHHHHHTTSSEEEEEESC
T ss_pred CCCCEEEECcC---------ccccHHHHHHHHhCCCEEEEEECC
Confidence 37999987421 112455677777888888877654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-07 Score=89.79 Aligned_cols=91 Identities=18% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc---C-------------------CeEEEeeCCCCC-
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---G-------------------HEVLVADAVNLP- 174 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~---~-------------------~~~~~~d~~~~~- 174 (377)
++.+|||+|||+|.++- ..+..+|+++|+++.+++.++++ + ++++.+|+..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 57899999999999642 24567899999999999998875 2 567778876642
Q ss_pred CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...++||+|++.- . .. ...++..+.+.|||||.++++.
T Consensus 127 ~~~~~fD~I~lDP-~---~~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GS---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CC---HHHHHHHHHHhcCCCCEEEEEe
Confidence 1145799999642 1 12 3578999999999999888875
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.3e-06 Score=78.99 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=75.6
Q ss_pred CCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC-CCCCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~-~~~~~~fD~V 183 (377)
+...+||=||.|.|..++. .+..+|+.||+++..++.+++. +++++.+|+..+ .-..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4567999999999997653 3456999999999999999864 478899999874 3456789999
Q ss_pred Eeccc-----hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIAV-----LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~~-----l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.-.. -.++-. ..+++.+++.|+|||+++.....
T Consensus 162 i~D~~dp~~~~~~L~t----~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFT----SAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EESCCCCCCTTCCSSC----CHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcC----HHHHHHHHHHhCCCCEEEEecCC
Confidence 97532 122333 47999999999999999987543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-07 Score=87.63 Aligned_cols=92 Identities=18% Similarity=-0.003 Sum_probs=70.9
Q ss_pred CCCCEEEEECCccCcccc----cCCC-ceEEEEeCCHHHHHHHHHc-------C--CeEEEeeCCCCC--CCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLP--YRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~-~~v~gvD~s~~~~~~a~~~-------~--~~~~~~d~~~~~--~~~~~fD~V~ 184 (377)
.++.+|||++||+|.++- ..++ .+|+++|+++.+++.++++ + +.++.+|+..+. ...++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 467899999999998642 2345 5899999999999999987 2 677888876531 1246799999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+.- ... +..++..+.+.|+|||+++++.
T Consensus 131 lDP----~g~---~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP----FGT---PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC----SSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC----CcC---HHHHHHHHHHHhCCCCEEEEEe
Confidence 864 112 3468999999999999888876
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=82.73 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
+.+|++|||+||++|.|+.. ..++.|++||+.+-........++.++++|+..+..+.++||+|+|-.+..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~------- 281 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK------- 281 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC-------
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC-------
Confidence 57899999999999999753 567899999987643333333379999999998877778999999977653
Q ss_pred HHHHHHHHHHccccC---cEEEEEEc
Q 017080 198 RKKAIEELVRVVKKG---SLVLITVW 220 (377)
Q Consensus 198 ~~~~l~~~~r~Lkpg---G~l~i~~~ 220 (377)
+...+..+.+.|..| +.++..-.
T Consensus 282 p~~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 282 PAKVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred hHHhHHHHHHHHhccccceEEEEEEe
Confidence 455555555555544 55444433
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-07 Score=91.50 Aligned_cols=102 Identities=9% Similarity=0.149 Sum_probs=75.7
Q ss_pred CCCCCEEEEECCccCccccc--------C--------------CCceEEEEeCCHHHHHHHHHc----C--------CeE
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--------N--------------PDCFFVGCDISPSLIKICVDR----G--------HEV 165 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--------~--------------~~~~v~gvD~s~~~~~~a~~~----~--------~~~ 165 (377)
..++.+|||.|||+|.++.. . ....++|+|+++.+++.|+.+ + ..+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 45678999999999997521 1 124799999999999999876 2 567
Q ss_pred EEeeCCCCC-CCCCceeEEEeccchhhcCC-----------hHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 166 LVADAVNLP-YRSDFGDAAISIAVLHHLST-----------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 166 ~~~d~~~~~-~~~~~fD~V~~~~~l~h~~~-----------~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..+|....+ ...++||+|+++-.+..... ......++.++.+.|||||++.+..+.
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 888876643 34578999999755443221 111247999999999999999998764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.24 E-value=8.3e-07 Score=81.87 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=48.0
Q ss_pred CCCCCCEEEEECCccCccccc-----CC-CceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCC
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NP-DCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRS 177 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~-~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~ 177 (377)
.+.++.+|||||||+|.++.. .. +.+|+|+|+|+.|++.++++ +++++++|+..+++++
T Consensus 39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 456788999999999998642 11 24599999999999999875 6899999999987643
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.7e-07 Score=82.57 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=59.1
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CC-
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YR- 176 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--~~- 176 (377)
...+...+. +.++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ ++.++++|+.+++ +.
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 344445543 4678899999999999753 35678999999999999999876 4789999998764 22
Q ss_pred --CCceeEEEecc
Q 017080 177 --SDFGDAAISIA 187 (377)
Q Consensus 177 --~~~fD~V~~~~ 187 (377)
.++||.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 15899998754
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.22 E-value=8e-07 Score=90.44 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=68.6
Q ss_pred CCEEEEECCccCcccc----c----C---------CCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC--
Q 017080 123 GSLVLDAGCGNGKYLG----L----N---------PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR-- 176 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~----~---------~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~-- 176 (377)
+..|||||||+|.+.. . . ...+|++||-|+.+....+.. .|+++.+|++++.++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 4689999999999731 1 1 234999999999766444332 489999999998664
Q ss_pred ---CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 177 ---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 177 ---~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.++.|+||+-.+-..+ +.|.....|..+.+.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl-~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFG-DNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTB-GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEecccccc-chhccHHHHHHHHHhCCCCcEEE
Confidence 5789999997653333 33335678888899999999754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.4e-06 Score=87.53 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=72.1
Q ss_pred CCCCCCEEEEECCccCcccc--------cCC--------------------------------------CceEEEEeCCH
Q 017080 119 SLPSGSLVLDAGCGNGKYLG--------LNP--------------------------------------DCFFVGCDISP 152 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~--------~~~--------------------------------------~~~v~gvD~s~ 152 (377)
...++..|||.+||+|.++. ..| ...++|+|+++
T Consensus 187 ~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~ 266 (703)
T 3v97_A 187 GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA 266 (703)
T ss_dssp TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH
T ss_pred CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH
Confidence 44577899999999999741 112 25799999999
Q ss_pred HHHHHHHHc----C----CeEEEeeCCCCC--CCCCceeEEEeccchhh-cCChHHHHHHHHHHH---HccccCcEEEEE
Q 017080 153 SLIKICVDR----G----HEVLVADAVNLP--YRSDFGDAAISIAVLHH-LSTESRRKKAIEELV---RVVKKGSLVLIT 218 (377)
Q Consensus 153 ~~~~~a~~~----~----~~~~~~d~~~~~--~~~~~fD~V~~~~~l~h-~~~~~~~~~~l~~~~---r~LkpgG~l~i~ 218 (377)
.+++.|+.+ + ++|.++|+.++. ..+++||+|+++=-... +.+......+.+.+. +.+.|||.+++.
T Consensus 267 ~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 267 RVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 999999987 2 689999998874 33448999999843321 222222444555444 445589999998
Q ss_pred EcC
Q 017080 219 VWA 221 (377)
Q Consensus 219 ~~~ 221 (377)
+..
T Consensus 347 t~~ 349 (703)
T 3v97_A 347 SAS 349 (703)
T ss_dssp ESC
T ss_pred eCC
Confidence 754
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.21 E-value=5e-07 Score=82.11 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=53.3
Q ss_pred CCCCCCEEEEECCccCcccccCCCce--EEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC-----CceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGLNPDCF--FVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS-----DFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~~~~~~--v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~-----~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++....+.+ |+|+|+++.|++.++++ +++++.+|+..+++++ +..|.|+++
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsN 97 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGN 97 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred CCCCcCEEEEECCCCcHHHHhhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEEC
Confidence 35678899999999999865322346 99999999999999886 5789999999887543 234566665
Q ss_pred cc
Q 017080 187 AV 188 (377)
Q Consensus 187 ~~ 188 (377)
-.
T Consensus 98 lP 99 (252)
T 1qyr_A 98 LP 99 (252)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.1e-07 Score=83.41 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=68.6
Q ss_pred CCCCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHH-----cCCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD-----RGHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~-----~~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||+|||+|.|++. .+...|+|+|++..+...+.. .++..+..++....++.+++|+|+|-.+.
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmAp 166 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGE 166 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCcc
Confidence 467888999999999999753 344589999998664322221 02233333333233557899999998765
Q ss_pred hhcCC----hHHHHHHHHHHHHccccC--cEEEEEEcCC
Q 017080 190 HHLST----ESRRKKAIEELVRVVKKG--SLVLITVWAV 222 (377)
Q Consensus 190 ~h~~~----~~~~~~~l~~~~r~Lkpg--G~l~i~~~~~ 222 (377)
. ... ..+...+|.-+.++|+|| |.+++-.+..
T Consensus 167 n-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 167 S-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred C-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 5 222 111224577778999999 9999998873
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=87.94 Aligned_cols=91 Identities=11% Similarity=0.193 Sum_probs=66.4
Q ss_pred CCEEEEECCccCcccc------c--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 123 GSLVLDAGCGNGKYLG------L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~------~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+..|||||||+|.+.. . ....+|++||-|+.+. .+++. .|+++.+|++++.+| +++|+||+-
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 4589999999998731 1 2334899999998543 34432 489999999998765 679999996
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.+=..+-.+. ...+|....|.|||||.++
T Consensus 436 wMG~fLl~E~-mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNEL-SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred cCcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence 5544443333 4578888899999999753
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.2e-06 Score=83.61 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=69.9
Q ss_pred CEEEEECCccCccccc----C---------------CCceEEEEeCCHHHHHHHHHc----CC--eE--EEeeCCCCC-C
Q 017080 124 SLVLDAGCGNGKYLGL----N---------------PDCFFVGCDISPSLIKICVDR----GH--EV--LVADAVNLP-Y 175 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~----~---------------~~~~v~gvD~s~~~~~~a~~~----~~--~~--~~~d~~~~~-~ 175 (377)
.+|||.+||+|.++.. . ....++|+|+++.++..|+.+ ++ .+ .++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 3999999999987521 0 146899999999999999876 32 23 666765543 4
Q ss_pred CCCceeEEEeccchhh-------------------------cCCh-HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 176 RSDFGDAAISIAVLHH-------------------------LSTE-SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h-------------------------~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++.+||+|+++=.+.. ++.. ..-..+++.+.+.|||||++.+..+.
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 5678999999643321 1110 00136899999999999999998765
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.7e-05 Score=76.51 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=74.7
Q ss_pred CCCCEEEEECCccCccccc-------CCCceEEEEeCCHHHHHHHHHc----CC-----eEEEeeCCCC--C-CCCCcee
Q 017080 121 PSGSLVLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR----GH-----EVLVADAVNL--P-YRSDFGD 181 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~-------~~~~~v~gvD~s~~~~~~a~~~----~~-----~~~~~d~~~~--~-~~~~~fD 181 (377)
.++.+|||.+||+|.++.. .....++|+|+++.+...|+.+ ++ .+..+|.... | .....||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 3677999999999997632 2356999999999999999875 33 5788888765 4 4567899
Q ss_pred EEEeccchhh-------------------cCCh-HHHHHHHHHHHHccc-cCcEEEEEEcCC
Q 017080 182 AAISIAVLHH-------------------LSTE-SRRKKAIEELVRVVK-KGSLVLITVWAV 222 (377)
Q Consensus 182 ~V~~~~~l~h-------------------~~~~-~~~~~~l~~~~r~Lk-pgG~l~i~~~~~ 222 (377)
+|+++=.+.. ++.. ..-..+++.+.+.|+ |||++.+..+..
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence 9998622210 1100 001358999999999 999999887653
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.6e-06 Score=68.28 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCCCCEEEEECCccCc-cccc---CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCC-CceeEEEeccchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGK-YLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRS-DFGDAAISIAVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~-~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~-~~fD~V~~~~~l~h~~~ 194 (377)
..++.+|||||||.|. .+.. ..+.+|+++|+++..++ +++.|+.+..... +.||+|.+...=
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~--------~v~dDiF~P~~~~Y~~~DLIYsirPP----- 99 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG--------IVRDDITSPRMEIYRGAALIYSIRPP----- 99 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT--------EECCCSSSCCHHHHTTEEEEEEESCC-----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc--------eEEccCCCCcccccCCcCEEEEcCCC-----
Confidence 3456799999999994 5432 47889999999998755 8899998843211 489999886531
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
.| +...+.++++.+ |.-++|.....+.
T Consensus 100 ~E-l~~~i~~lA~~v--~adliI~pL~~E~ 126 (153)
T 2k4m_A 100 AE-IHSSLMRVADAV--GARLIIKPLTGED 126 (153)
T ss_dssp TT-THHHHHHHHHHH--TCEEEEECBTTBC
T ss_pred HH-HHHHHHHHHHHc--CCCEEEEcCCCCc
Confidence 12 556666666654 5677777665543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.2e-05 Score=67.47 Aligned_cols=91 Identities=10% Similarity=0.089 Sum_probs=65.4
Q ss_pred CCCCEEEEECCccCc-ccccCCCceEEEEeCCHHHHHHHHHc----C------CeEEEeeCCCC---------------C
Q 017080 121 PSGSLVLDAGCGNGK-YLGLNPDCFFVGCDISPSLIKICVDR----G------HEVLVADAVNL---------------P 174 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~-~~~~~~~~~v~gvD~s~~~~~~a~~~----~------~~~~~~d~~~~---------------~ 174 (377)
.+..+|||+|||... ++...++.+|+.+|.++...+.|+++ + ++++.+|+... +
T Consensus 29 ~~a~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 29 EEAEVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp HHCSEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred hCCCEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 356799999997433 22233478999999999999998864 3 56788886542 1
Q ss_pred --------C-CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 --------Y-RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 --------~-~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ..++||+|+.-+-. ....+..+.+.|+|||+|++-+
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~k--------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGRF--------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSSS--------HHHHHHHHHHHCSSCEEEEETT
T ss_pred HHhhhhhccccCCCCCEEEEeCCC--------chhHHHHHHHhcCCCeEEEEeC
Confidence 1 13789999997631 3466677789999999986643
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-06 Score=82.96 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=53.0
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------C---CeEEEeeCCCC-CC-CCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------G---HEVLVADAVNL-PY-RSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~---~~~~~~d~~~~-~~-~~~~fD~V~~~ 186 (377)
+.+|.+|||+|||+|..+.. ..+.+|+|+|+|+.+++.|+.+ + ++++++|+.+. +. ++++||+|++.
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 34589999999999997432 3467999999999999999876 2 67899999874 32 24689999993
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=4.4e-06 Score=76.36 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=69.2
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHH-----cCCeEEEeeCCCCCCCCCcee
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD-----RGHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~-----~~~~~~~~d~~~~~~~~~~fD 181 (377)
.++.+. ..+.++.+|||+||++|.|+.. .+-..|+|+|++..+...... .++.....++....+..+.+|
T Consensus 71 ~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D 149 (300)
T 3eld_A 71 RWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD 149 (300)
T ss_dssp HHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence 344444 5567899999999999998753 233478999997543211100 012222222222334567899
Q ss_pred EEEeccchhhcCC----hHHHHHHHHHHHHccccC-cEEEEEEcCC
Q 017080 182 AAISIAVLHHLST----ESRRKKAIEELVRVVKKG-SLVLITVWAV 222 (377)
Q Consensus 182 ~V~~~~~l~h~~~----~~~~~~~l~~~~r~Lkpg-G~l~i~~~~~ 222 (377)
+|+|..+-. ... ..+-..+|.-+.++|+|| |.+++-.+..
T Consensus 150 lVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~ 194 (300)
T 3eld_A 150 TLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAP 194 (300)
T ss_dssp EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESST
T ss_pred EEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 999976554 222 111234577778999999 9999998873
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.4e-06 Score=77.80 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=61.9
Q ss_pred CCCCEEEEECCccCccc----cc-------CCC-----ceEEEEeCCH---HHHH-----------HHHHc---------
Q 017080 121 PSGSLVLDAGCGNGKYL----GL-------NPD-----CFFVGCDISP---SLIK-----------ICVDR--------- 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~----~~-------~~~-----~~v~gvD~s~---~~~~-----------~a~~~--------- 161 (377)
.++.+|||||+|+|..+ .. .|. .+++++|..| .++. .+++.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 34579999999999943 11 453 5899999876 4433 22221
Q ss_pred ------------CCeEEEeeCCC-CCC-CC---CceeEEEeccc-hhhcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 162 ------------GHEVLVADAVN-LPY-RS---DFGDAAISIAV-LHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 162 ------------~~~~~~~d~~~-~~~-~~---~~fD~V~~~~~-l~h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
+++++.+|+.+ ++. ++ ..||+|+.-.. -...++-- -..+++.++++|||||+++.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw-~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMW-TQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGC-CHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhc-CHHHHHHHHHHcCCCcEEEE
Confidence 24567888766 442 22 27999998531 11111100 15799999999999999774
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.89 E-value=4.2e-06 Score=76.16 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=59.6
Q ss_pred CCCCC--CEEEEECCccCccccc--CCCceEEEEeCCHHH-------HHHHHH---------cCCeEEEeeCCC-CCCCC
Q 017080 119 SLPSG--SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSL-------IKICVD---------RGHEVLVADAVN-LPYRS 177 (377)
Q Consensus 119 ~~~~~--~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~-------~~~a~~---------~~~~~~~~d~~~-~~~~~ 177 (377)
.+.++ .+|||+|||+|..+-. ..+++|+++|+++.+ ++.++. .+++++.+|+.+ ++...
T Consensus 83 ~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~ 162 (258)
T 2oyr_A 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (258)
T ss_dssp TCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred cccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence 35566 8999999999996421 236789999999976 333321 237889999877 33223
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCc
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS 213 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG 213 (377)
++||+|++.-++.+-.. .+++++..++|++.+
T Consensus 163 ~~fDvV~lDP~y~~~~~----saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 163 PRPQVVYLDPMFPHKQK----SALVKKEMRVFQSLV 194 (258)
T ss_dssp SCCSEEEECCCCCCCCC---------HHHHHHHHHS
T ss_pred ccCCEEEEcCCCCCccc----chHHHHHHHHHHHhh
Confidence 47999999877765322 256666667776654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-05 Score=79.11 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=69.6
Q ss_pred CCCCEEEEECCccCcccc----cCC---CceEEEEeCCHHHHHHH--HHc--------C---CeEEEeeCCCC-CCCCCc
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNP---DCFFVGCDISPSLIKIC--VDR--------G---HEVLVADAVNL-PYRSDF 179 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~---~~~v~gvD~s~~~~~~a--~~~--------~---~~~~~~d~~~~-~~~~~~ 179 (377)
+++.+|||.|||+|.++. ..+ ...++|+|+++.+++.| +.+ + ..+...|+... +...+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 457899999999999752 222 35899999999999998 432 1 23444455443 234578
Q ss_pred eeEEEeccchhh-cCChH-------------------------HHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 180 GDAAISIAVLHH-LSTES-------------------------RRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 180 fD~V~~~~~l~h-~~~~~-------------------------~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
||+|+++=-... ..... -...+++.+.+.|+|||++.+..+..
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 999999644311 11100 02457889999999999999988653
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=5.7e-06 Score=74.02 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCCCCCEEEEECCccCccccc---CCCc-eEEEEeCCHH--HHHHHHH-cCCeEE---Ee-eCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPS--LIKICVD-RGHEVL---VA-DAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~-~v~gvD~s~~--~~~~a~~-~~~~~~---~~-d~~~~~~~~~~fD~V~~~~ 187 (377)
-++|+.+|||+||+.|.|+.. ..+. .|.|.++... +...... .++.|+ ++ |+.+++ ..++|+|+|-.
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDM 147 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCDI 147 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEECC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeCC
Confidence 578999999999999998754 2112 3344443332 1111000 234333 36 887743 56899999966
Q ss_pred chh---hcCChHHHHHHHHHHHHccccCc-EEEEEEcCC
Q 017080 188 VLH---HLSTESRRKKAIEELVRVVKKGS-LVLITVWAV 222 (377)
Q Consensus 188 ~l~---h~~~~~~~~~~l~~~~r~LkpgG-~l~i~~~~~ 222 (377)
.=. ...|..+-..+|.-+.++|+||| .+++-.+..
T Consensus 148 APnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 148 GESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 332 11111111236767779999999 999988773
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=4.1e-05 Score=72.85 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=77.3
Q ss_pred HHHHHhCCCCCCEEEEECCccCc----ccccCCCceEEEEeCCHHHHHHHHHc-------------CCeEEEeeCCCCC-
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVNLP- 174 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~----~~~~~~~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~- 174 (377)
+...+....+|.+|||+.+|.|. ++.......|+++|+|+.-++..+++ ++.+...|...++
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~ 218 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 218 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence 34445567889999999999997 23345556899999999988776654 2455666766653
Q ss_pred CCCCceeEEEeccc--------hhhcCC------hH-------HHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 175 YRSDFGDAAISIAV--------LHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 175 ~~~~~fD~V~~~~~--------l~h~~~------~~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
...+.||.|++-.- +..-++ .+ ...++|....+.|||||+|+-++-+....
T Consensus 219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL 290 (359)
T ss_dssp HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence 34678999997321 111010 01 12478889999999999999988665433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=3.3e-05 Score=73.56 Aligned_cols=99 Identities=19% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc---------------CCeEEEeeCCCCC----CCCC
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVNLP----YRSD 178 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~---------------~~~~~~~d~~~~~----~~~~ 178 (377)
.++.+||=||.|.|..++. ++..+|+.|||++..++.+++. +++++.+|+..+- -..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3568999999999997653 5667999999999999999975 2456677765421 1246
Q ss_pred ceeEEEeccchh-------hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 179 FGDAAISIAVLH-------HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 179 ~fD~V~~~~~l~-------h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+||+|+.-..-. ......--..+++.+++.|+|||+++...
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 899999853211 11111112578899999999999988763
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=3.2e-05 Score=90.49 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=61.6
Q ss_pred CCCCEEEEECCccCccccc-------CC--CceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCC-CCCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLGL-------NP--DCFFVGCDISPSLIKICVDR----GHEVLVADAVNL-PYRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~-------~~--~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~-~~~~~~fD~V~~~ 186 (377)
.+..+|||||.|+|..+.. .+ ..+++..|+|+...+.++++ .+.....|..+. ++...+||+|++.
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 3567999999999986432 11 24789999998877666554 122211233332 3345679999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
.++|..++ ....|++++++|||||.+++.+..... +. .....|+... ........+.++|.++
T Consensus 1319 ~vl~~t~~---~~~~l~~~~~lL~p~G~l~~~e~~~~~--------~~----g~~~~~~~~~--~r~~~~~~~~~~w~~~ 1381 (2512)
T 2vz8_A 1319 CALATLGD---PAVAVGNMAATLKEGGFLLLHTLLAGH--------PL----GEMVGFLTSP--EQGGRHLLSQDQWESL 1381 (2512)
T ss_dssp CC-----------------------CCEEEEEEC----------------------------------------CTTTTS
T ss_pred cccccccc---HHHHHHHHHHhcCCCcEEEEEeccccc--------cc----cccccccccc--cccCCcccCHHHHHHH
Confidence 99988887 789999999999999999887643210 00 0011121110 0011234667788889
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
|..+||..
T Consensus 1382 l~~~gf~~ 1389 (2512)
T 2vz8_A 1382 FAGASLHL 1389 (2512)
T ss_dssp STTTTEEE
T ss_pred HHhCCCce
Confidence 99999966
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.53 E-value=8.5e-05 Score=67.62 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=70.3
Q ss_pred CCCCCCEEEEECCccCccccc---CCCc-eEEEEeCCHHHHH------HHHHcCCeEEEe-eCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPSLIK------ICVDRGHEVLVA-DAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~-~v~gvD~s~~~~~------~a~~~~~~~~~~-d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+||++|.|+.+ ..++ .|+|+|+...-.+ .-.-+.+.+... |+..++ ..++|+|+|-.
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~--~~~~D~ivcDi 168 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRP--SECCDTLLCDI 168 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSC--CCCCSEEEECC
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCC--CCCCCEEEEEC
Confidence 467888999999999998752 4444 7999999776111 111123667766 776665 36699999976
Q ss_pred chhhcCChH----HHHHHHHHHHHccccC-cEEEEEEcCCC
Q 017080 188 VLHHLSTES----RRKKAIEELVRVVKKG-SLVLITVWAVE 223 (377)
Q Consensus 188 ~l~h~~~~~----~~~~~l~~~~r~Lkpg-G~l~i~~~~~~ 223 (377)
. +.-++.. +-..+|.-+.++|++| |-++|-++.+.
T Consensus 169 g-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 169 G-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred c-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 6 5555522 1234677778899999 89998887764
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00023 Score=65.31 Aligned_cols=95 Identities=14% Similarity=-0.006 Sum_probs=67.0
Q ss_pred CCCCEEEEECCccCcccc----c-----CCCceEEEEeCCHH--------------------------HHHHHHHc----
Q 017080 121 PSGSLVLDAGCGNGKYLG----L-----NPDCFFVGCDISPS--------------------------LIKICVDR---- 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~-----~~~~~v~gvD~s~~--------------------------~~~~a~~~---- 161 (377)
..+.+|||+|+.+|..+. . .++.+|+++|.... .++.++++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 345699999999998431 1 15789999996421 23344433
Q ss_pred -----CCeEEEeeCCC-CC-CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 162 -----GHEVLVADAVN-LP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 162 -----~~~~~~~d~~~-~~-~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+++++.+|+.+ ++ +++++||+|+.-.-.+ .. ....|..+...|+|||++++-++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~---~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ES---TWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HH---HHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--cc---HHHHHHHHHhhcCCCEEEEEcCC
Confidence 47789999876 44 4467899999876421 11 45789999999999999888665
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00021 Score=63.08 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=69.1
Q ss_pred CCCCCCEEEEECCccCccccc---CCCc-eEEEEeCCHHHHHH---HHH---cCCeEEEe-eCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPSLIKI---CVD---RGHEVLVA-DAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~-~v~gvD~s~~~~~~---a~~---~~~~~~~~-d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+||++|.|+.+ ..++ .|+|+|+...-.+. .+. +.++|..+ |+..++ ..++|+|+|-.
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDI 152 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDI 152 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEEec
Confidence 467889999999999998752 3343 89999997653211 000 24788888 876654 36799999965
Q ss_pred chhhcCCh----HHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 188 VLHHLSTE----SRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 188 ~l~h~~~~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
.= .-++. ++-..+|.-+.++|++ |-+++-++.+..
T Consensus 153 ge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 153 GE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred CC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 43 22221 1123467777899998 788888876654
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0018 Score=64.89 Aligned_cols=134 Identities=18% Similarity=0.265 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhCcccc-----cccccchHHHHHHHh---CCCCCCEEEEECCccCccccc--------C---------CC
Q 017080 88 KKYVHRVYDAIAPHFS-----STRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------N---------PD 142 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~-----~~~~~~~~~~~~~l~---~~~~~~~vLDiGcG~G~~~~~--------~---------~~ 142 (377)
.+....+|...-..|. ...+...+.+..++. ...++.+|+|-+||+|.|+.. . ..
T Consensus 175 ~d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~ 254 (530)
T 3ufb_A 175 MHTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQE 254 (530)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhh
Confidence 3445555654444332 123444455544443 345678999999999997521 1 13
Q ss_pred ceEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCC----CCCceeEEEeccchhh-------------cCChHHH
Q 017080 143 CFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPY----RSDFGDAAISIAVLHH-------------LSTESRR 198 (377)
Q Consensus 143 ~~v~gvD~s~~~~~~a~~~----~---~~~~~~d~~~~~~----~~~~fD~V~~~~~l~h-------------~~~~~~~ 198 (377)
..++|+|+++.+...|+-+ + ..+..+|....+. ....||+|+++=.+.- .+..+.-
T Consensus 255 ~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~ 334 (530)
T 3ufb_A 255 SSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETA 334 (530)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHH
T ss_pred hhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhH
Confidence 4799999999999999875 2 4566777665442 2357999999654421 1111112
Q ss_pred HHHHHHHHHccc-------cCcEEEEEEcC
Q 017080 199 KKAIEELVRVVK-------KGSLVLITVWA 221 (377)
Q Consensus 199 ~~~l~~~~r~Lk-------pgG~l~i~~~~ 221 (377)
..+++.+.+.|| |||++.+..+.
T Consensus 335 ~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 335 MLFLQLIMRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp HHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred HHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence 467888888887 79999998764
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00075 Score=61.54 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=54.5
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHH---cCCeEEEeeCCCCC-----CCCCc
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD---RGHEVLVADAVNLP-----YRSDF 179 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~---~~~~~~~~d~~~~~-----~~~~~ 179 (377)
..++...+. +.++..+||.+||.|..+.. ..+.+|+|+|.++.+++.+++ .++.++.+++.+++ ...++
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~ 89 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER 89 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCC
Confidence 445555554 56788999999999997642 127799999999999999886 24667777776653 12246
Q ss_pred eeEEEec
Q 017080 180 GDAAISI 186 (377)
Q Consensus 180 fD~V~~~ 186 (377)
+|.|++.
T Consensus 90 vDgIL~D 96 (285)
T 1wg8_A 90 VDGILAD 96 (285)
T ss_dssp EEEEEEE
T ss_pred cCEEEeC
Confidence 7777763
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00061 Score=62.01 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=71.5
Q ss_pred HHHHHHHh----CCCCCCEEEEECC------ccCccc-c-cCCC-ceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCC
Q 017080 111 PKVATFLN----SLPSGSLVLDAGC------GNGKYL-G-LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRS 177 (377)
Q Consensus 111 ~~~~~~l~----~~~~~~~vLDiGc------G~G~~~-~-~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~ 177 (377)
.++.+++. .++.+++|||+|+ -+|.+. + ..|. +.|+++|+.+-.. .. -.++++|...... .
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s----da-~~~IqGD~~~~~~-~ 167 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS----DA-DSTLIGDCATVHT-A 167 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC----SS-SEEEESCGGGEEE-S
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc----CC-CeEEEcccccccc-C
Confidence 34555654 3578999999996 555542 2 3665 6999999977431 11 2458899765432 5
Q ss_pred CceeEEEeccc---hhhcC-----ChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 178 DFGDAAISIAV---LHHLS-----TESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 178 ~~fD~V~~~~~---l~h~~-----~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
++||+|++-.. -.+.. ...-.+.++.-+.++|+|||.|++-.+-...
T Consensus 168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 78999999542 22211 1112566777788899999999999876543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0048 Score=58.04 Aligned_cols=145 Identities=11% Similarity=0.089 Sum_probs=90.7
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc----------------------------CCeEEEe
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----------------------------GHEVLVA 168 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~----------------------------~~~~~~~ 168 (377)
.+...|+.+|||.....- ..++..++-||. |..++.-++. +..++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 355799999999987542 246788999998 6655443321 3567778
Q ss_pred eCCCCC--------C-CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHH
Q 017080 169 DAVNLP--------Y-RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK 239 (377)
Q Consensus 169 d~~~~~--------~-~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 239 (377)
|+.+.. . ..+...++++-+++.+++.++ ..++|+.+.+.. |+|.+++.+............. ....
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~-~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~---~m~~ 249 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNE-SQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGA---IMQS 249 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHH-HHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHH---HHHH
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHH-HHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHH---HHHH
Confidence 887631 1 234568999999999998765 788999998877 7788776654433110000000 0011
Q ss_pred HHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCc
Q 017080 240 YVEEWIGPGSPRVRSPSARTLESIPETEDNGSEE 273 (377)
Q Consensus 240 ~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~ 273 (377)
.+..+.. .+......+.++++..+.|.++||.
T Consensus 250 ~l~~~rg--~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRN--LEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHC--CCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccC--CcccccccCCCHHHHHHHHHHCCCC
Confidence 1122111 1222223567888999999999994
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.003 Score=58.32 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=35.6
Q ss_pred CCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.++..|||++||+|..+. ...+.+++|+|+++.+++.|+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKER 276 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 578899999999999753 35677999999999999999887
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.012 Score=54.24 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=56.2
Q ss_pred CCEEEEECCccCccc--------ccCCCc--eEEEEeCCH------------HHHHHHHHc---------CCeEEEeeCC
Q 017080 123 GSLVLDAGCGNGKYL--------GLNPDC--FFVGCDISP------------SLIKICVDR---------GHEVLVADAV 171 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~--------~~~~~~--~v~gvD~s~------------~~~~~a~~~---------~~~~~~~d~~ 171 (377)
.-+|||+|-|||... +..|.. +++.+|..+ ...+..... .+.+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 358999999999842 114554 567776421 111111111 2356677876
Q ss_pred C-CC-CCCCceeEEEeccchhhcCChHHH-HHHHHHHHHccccCcEEE
Q 017080 172 N-LP-YRSDFGDAAISIAVLHHLSTESRR-KKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 172 ~-~~-~~~~~fD~V~~~~~l~h~~~~~~~-~~~l~~~~r~LkpgG~l~ 216 (377)
. ++ +.+..||+|+.-.. .--.+++.| ..+++.++++++|||.+.
T Consensus 177 ~~l~~l~~~~~Da~flDgF-sP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAF-SPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp HHGGGCCSCCEEEEEECCS-CTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred HHHhhhcccceeEEEeCCC-CcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 5 33 44558999998652 212221111 589999999999999765
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.026 Score=54.14 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=67.4
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC---------CCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPY---------RSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~---------~~~~fD~V 183 (377)
..+.+|.+||-+|+|. |.++. ...++ +|+++|.|+..++.+++.+..+ .|..+..+ ....+|+|
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~--i~~~~~~~~~~~~~~~~~g~g~Dvv 258 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFET--IDLRNSAPLRDQIDQILGKPEVDCG 258 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEE--EETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE--EcCCCcchHHHHHHHHhCCCCCCEE
Confidence 4678899999999976 66542 23466 8999999999999998877753 34332211 12369999
Q ss_pred Eeccchh---------hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLH---------HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~---------h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+-.-.-. |++ +...++++.+.|+|||++++.-
T Consensus 259 id~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 259 VDAVGFEAHGLGDEANTET----PNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EECSCTTCBCSGGGTTSBC----TTHHHHHHHHHEEEEEEEECCS
T ss_pred EECCCCccccccccccccc----cHHHHHHHHHHHhcCCEEEEec
Confidence 8765432 121 2357889999999999987653
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.21 Score=46.25 Aligned_cols=142 Identities=9% Similarity=0.023 Sum_probs=88.1
Q ss_pred CEEEEECCccCccc-cc-CC-CceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCC---------CCCCcee
Q 017080 124 SLVLDAGCGNGKYL-GL-NP-DCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP---------YRSDFGD 181 (377)
Q Consensus 124 ~~vLDiGcG~G~~~-~~-~~-~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~---------~~~~~fD 181 (377)
..|+++|||-=... +. .+ +..++-+| -|..++..++. +..++.+|+.+ . +..+.-=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 57999999975533 22 23 47999999 48777665543 34577788876 2 1123345
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCC-----CCcCCCC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGS-----PRVRSPS 256 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~~~~~~~ 256 (377)
++++-++++|+++++ ...+++.+...+.||+.+++........... .. ........+.... +......
T Consensus 182 ~~i~Egvl~Yl~~~~-~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~--~~----~~~~~~~~~~~~g~~~~~~l~~~~~ 254 (310)
T 2uyo_A 182 AWLAEGLLMYLPATA-QDGLFTEIGGLSAVGSRIAVETSPLHGDEWR--EQ----MQLRFRRVSDALGFEQAVDVQELIY 254 (310)
T ss_dssp EEEECSCGGGSCHHH-HHHHHHHHHHTCCTTCEEEEECCCTTCSHHH--HH----HHHHHHHHHC-----------CCTT
T ss_pred EEEEechHhhCCHHH-HHHHHHHHHHhCCCCeEEEEEecCCCCcchh--HH----HHHHHHHHHHHcCCcCCCCcccccc
Confidence 788889999999865 8899999999999999988876543221000 00 1111101122111 1112223
Q ss_pred CCC-cccHHhHhhcCCCcc
Q 017080 257 ART-LESIPETEDNGSEEQ 274 (377)
Q Consensus 257 ~~~-~~~l~~~l~~aGF~~ 274 (377)
..+ .+++.++|.+.||+.
T Consensus 255 ~~~~~~~~~~~f~~~G~~~ 273 (310)
T 2uyo_A 255 HDENRAVVADWLNRHGWRA 273 (310)
T ss_dssp CCTTCCCHHHHHTTTTEEE
T ss_pred CCCChHHHHHHHHHCcCcc
Confidence 346 789999999999944
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.039 Score=52.85 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=68.4
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---------CCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~---------~~~~~fD~V 183 (377)
..+.+|.+||-+|+|. |.++. ...++ .|+++|.++..++.+++.+...+ |..+.. .....+|+|
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~~~t~g~g~Dvv 258 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLGEPEVDCA 258 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHHHHhCCCCCCEE
Confidence 4678899999999876 66542 24566 79999999999999998887633 332211 112369999
Q ss_pred Eeccchh---------hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLH---------HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~---------h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+-.-.-. |.++ +...+++..+.|++||.+++.-
T Consensus 259 id~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 259 VDAVGFEARGHGHEGAKHEA---PATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EECCCTTCBCSSTTGGGSBC---TTHHHHHHHHHEEEEEEEEECS
T ss_pred EECCCCcccccccccccccc---hHHHHHHHHHHHhcCCEEEEec
Confidence 8765421 2333 4568899999999999987653
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.02 Score=53.35 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=39.9
Q ss_pred cchHHHHHHHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHH
Q 017080 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICV 159 (377)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~ 159 (377)
....+++..+. +.+|..++|..||.|..+ .. .+..+|+|+|.++.+++.++
T Consensus 44 VLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 44 VLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp TTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred ccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 34456666664 567889999999999854 22 57789999999999999884
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.079 Score=45.17 Aligned_cols=90 Identities=17% Similarity=0.068 Sum_probs=61.5
Q ss_pred CCCCCCEEEEECC--ccCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc--G~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||.+|+ |.|..+. ...+++|+++|.++...+.+++.+.... .|..+.. ...+.+|+++.
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~ 113 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLN 113 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-eeCCcHHHHHHHHHHhCCCCCeEEEE
Confidence 4678899999995 3455432 1456799999999998888876655433 3443321 11246999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ..++.+.+.|+|||++++..
T Consensus 114 ~~g-----~-----~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 114 SLA-----G-----EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp CCC-----T-----HHHHHHHHTEEEEEEEEECS
T ss_pred CCc-----h-----HHHHHHHHHhccCCEEEEEc
Confidence 542 2 35788899999999987753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.056 Score=51.17 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=64.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~~ 186 (377)
.+.++.+||-+|+|. |.++. ...++ .|+++|.++..++.+++.+..... |..+.. ...+.+|+|+..
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~~~gg~D~vid~ 265 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI-NSKTQDPVAAIKEITDGGVNFALES 265 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEe-cCCccCHHHHHHHhcCCCCcEEEEC
Confidence 567899999999876 66542 23466 799999999999999887765433 222211 112379998865
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. . ...++.+.+.|+|||.+++.-
T Consensus 266 ~g-----~----~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 266 TG-----S----PEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp SC-----C----HHHHHHHHHTEEEEEEEEECC
T ss_pred CC-----C----HHHHHHHHHHHhcCCEEEEeC
Confidence 32 2 356888999999999988764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.045 Score=51.38 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=65.0
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.+.+|.+||-+|+|. |.++. ...+++|+++|.++...+.+++.+......+...+ ...+|+|+-... .
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~---~~~~D~vid~~g-----~ 244 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQC---KEELDFIISTIP-----T 244 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGC---CSCEEEEEECCC-----S
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHH---hcCCCEEEECCC-----c
Confidence 578899999999875 65432 24678999999999999999988766554332222 227999986432 2
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+....+.|+|||.+++.-.
T Consensus 245 ----~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 245 ----HYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ----CCCHHHHHTTEEEEEEEEECCC
T ss_pred ----HHHHHHHHHHHhcCCEEEEECC
Confidence 1257778899999999888643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.054 Score=48.76 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=35.5
Q ss_pred CCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.++..|||..||+|..+. ...+.+++|+|+++..++.++++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r 253 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV 253 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 678899999999999753 35678999999999999999876
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.16 Score=48.12 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=65.7
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----------CCCCceeE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP----------YRSDFGDA 182 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----------~~~~~fD~ 182 (377)
..+.+|.+||=+|+|. |.++. ...++ .|+++|.++...+.+++.+..... |..+.. ...+.+|+
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~i~~~~~~~~gg~Dv 256 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV-DPSAGDVVEAIAGPVGLVPGGVDV 256 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE-CTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE-CCCCcCHHHHHHhhhhccCCCCCE
Confidence 4578899999999875 55432 25666 999999999999999988765433 221110 22347999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
|+-.. .. ...++.+.+.|+|||.+++.-
T Consensus 257 vid~~-----G~----~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 257 VIECA-----GV----AETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp EEECS-----CC----HHHHHHHHHHEEEEEEEEECS
T ss_pred EEECC-----CC----HHHHHHHHHHhccCCEEEEEe
Confidence 98753 22 357888999999999988764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.24 Score=46.32 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=64.1
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC---CCC------CC---CCcee
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV---NLP------YR---SDFGD 181 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~---~~~------~~---~~~fD 181 (377)
..+.+|.+||-+|+|. |.++. ...+++|+++|.++...+.+++.+..... |.. ++. .. .+.+|
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~-~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTL-VVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE-ECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEE-cCcccccHHHHHHHHhccccCCCCC
Confidence 3577899999999875 55432 24677899999999999999887765332 332 110 11 24689
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|+.... . ...++...+.|+|||.+++.-
T Consensus 243 ~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 243 VTIDCSG-----N----EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp EEEECSC-----C----HHHHHHHHHHSCTTCEEEECS
T ss_pred EEEECCC-----C----HHHHHHHHHHHhcCCEEEEEe
Confidence 9886532 2 246788889999999988754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.13 Score=47.95 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=64.9
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC------CCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY------RSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~------~~~~fD~V~~~~~ 188 (377)
.+.+|.+||-+|+|. |.++. ...+++|+++|.++...+.+++.+..... |..+..+ ..+.+|+|+....
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~~~g~~d~vid~~g 241 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAV-NARDTDPAAWLQKEIGGAHGVLVTAV 241 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEE-eCCCcCHHHHHHHhCCCCCEEEEeCC
Confidence 567899999999875 65432 24678999999999999999988765443 3322111 1136888876532
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ...++.+.+.|+|||.+++.-
T Consensus 242 -----~----~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 242 -----S----PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp -----C----HHHHHHHHHHEEEEEEEEECS
T ss_pred -----C----HHHHHHHHHHhccCCEEEEeC
Confidence 2 357888999999999988764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.085 Score=49.77 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=42.3
Q ss_pred CCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCC
Q 017080 122 SGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL 173 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~ 173 (377)
++..|||||.|.|.++.. ....+|+++++++.++...++. +++++.+|+..+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 358999999999998754 2345899999999998887763 688999999654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.11 Score=48.87 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=64.0
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCC-----CC-----CCCCCceeE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-----NL-----PYRSDFGDA 182 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~-----~~-----~~~~~~fD~ 182 (377)
..+.+|.+||-+|+|. |.++. ...++ +|+++|.++...+.+++.+..... |.. ++ ....+.+|+
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVL-QISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE-ECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-cCcccccchHHHHHHHHhCCCCCE
Confidence 3578899999999875 65532 24567 899999999999999987765332 322 10 000146899
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
|+-.. .. ...+....+.|+|||.+++.-
T Consensus 246 vid~~-----g~----~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 246 TIECT-----GA----EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp EEECS-----CC----HHHHHHHHHHSCTTCEEEECS
T ss_pred EEECC-----CC----hHHHHHHHHHhcCCCEEEEEe
Confidence 88643 22 346788899999999988754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.21 Score=46.84 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=65.5
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~ 184 (377)
..+.+|.+||=+|+|. |.++. ...++ +|+++|.++..++.+++.+..... |..+.. .....+|+|+
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~v~~~t~g~g~D~v~ 240 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDII-NYKNGDIVEQILKATDGKGVDKVV 240 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEE-CGGGSCHHHHHHHHTTTCCEEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEE-cCCCcCHHHHHHHHcCCCCCCEEE
Confidence 4578899999999876 55432 35677 899999999999999988765433 222111 1234699998
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
-... . ...+..+.+.|+|||.+++.-.
T Consensus 241 d~~g-----~----~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 241 IAGG-----D----VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp ECSS-----C----TTHHHHHHHHEEEEEEEEECCC
T ss_pred ECCC-----C----hHHHHHHHHHHhcCCEEEEecc
Confidence 6432 2 2467888999999999887643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.27 Score=39.42 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=63.0
Q ss_pred CEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCCh
Q 017080 124 SLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.+|+=+|+|. |..+. . ..+..|+++|.++..++.+++.++.++.+|..+.. ..-..+|+|++. ++++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~~~~ 82 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILT-----IPNG 82 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC-----CSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEE-----CCCh
Confidence 5799999987 65432 1 46789999999999999998888999999987632 123467888764 3443
Q ss_pred HHHHHHHHHHHHccccCcEEEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ -...+-...+.+.|+..++...
T Consensus 83 ~-~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 83 Y-EAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp H-HHHHHHHHHHHHCSSSEEEEEE
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEE
Confidence 2 2233445667778888766544
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.28 Score=45.63 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC------CCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR------SDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~------~~~fD~V~~~~~ 188 (377)
.+.++.+||-+|+|. |..+. ...+++|+++|.++..++.+++.+.... .|..+..+. .+.+|+|+....
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~-~d~~~~~~~~~~~~~~~~~d~vid~~g 239 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLV-VNPLKEDAAKFMKEKVGGVHAAVVTAV 239 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEE-ECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEE-ecCCCccHHHHHHHHhCCCCEEEECCC
Confidence 577899999999964 54432 2457899999999999999988766543 243321110 046899887532
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ...++.+.+.|++||.+++.-
T Consensus 240 -----~----~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 240 -----S----KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp -----C----HHHHHHHHHHEEEEEEEEECC
T ss_pred -----C----HHHHHHHHHHhhcCCEEEEec
Confidence 2 256788889999999987754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.059 Score=49.78 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=59.6
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.+.+|.+||=+|+|. |.++. ...+++|++++ |+...+.+++.+......|.+.+ .+.+|+|+-.-. .
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~g-----~ 209 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFAIFDAVN-----S 209 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEEEECC--------
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccEEEECCC-----c
Confidence 467899999999964 65432 24577999999 99999999888766554332222 567999886432 1
Q ss_pred hHHHHHHHHHHHHccccCcEEEEE
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
..+....+.|+|||.++..
T Consensus 210 -----~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 -----QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp ---------TTGGGEEEEEEEEEE
T ss_pred -----hhHHHHHHHhcCCCEEEEE
Confidence 1235678999999998877
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.17 Score=47.21 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=65.6
Q ss_pred CCCCCCEEEEECCcc-Ccccc----cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~~ 187 (377)
.+.++.+||-+|+|. |.++. ...+.+|+++|.++...+.+++.+.......-.++. .....+|+|+-.-
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~ 247 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV 247 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECC
Confidence 567899999999876 55432 234779999999999999999887655432211110 0123689988743
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. ...++.+.+.|+|||.+++.-.
T Consensus 248 -----G~----~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 248 -----GA----QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp -----CC----HHHHHHHHHHEEEEEEEEECSC
T ss_pred -----CC----HHHHHHHHHHHhcCCEEEEECC
Confidence 23 3578889999999999887643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.19 Score=46.54 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC-------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~~-------~~~~~fD~V~~ 185 (377)
.+.++.+||-.|++ .|..+. ...+++|+++|.++..++.+++.+.... .|..+ .. ...+.+|+++.
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~ 220 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASPDGYDCYFD 220 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEE-EecCCHHHHHHHHHHHhCCCCeEEEE
Confidence 46788999999983 455432 2467899999999999888866655433 34433 11 11257999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...- ..++...+.|+|||.+++.-
T Consensus 221 ~~g~----------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 221 NVGG----------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp SSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred CCCh----------HHHHHHHHHHhcCCEEEEEe
Confidence 6431 24778889999999987753
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.13 Score=48.47 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=64.2
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~~ 186 (377)
.+.+|.+||-+|+|. |.++. ...+++|+++|.++..++.+++.+...... -.... .....+|+|+..
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~v~~~~~g~g~D~vid~ 264 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGIN-RLEEDWVERVYALTGDRGADHILEI 264 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEc-CCcccHHHHHHHHhCCCCceEEEEC
Confidence 567899999999876 55432 256789999999999999998887654432 21111 113379999875
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. . ..+....+.|+|||.+++.-.
T Consensus 265 ~g-----~-----~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 265 AG-----G-----AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp TT-----S-----SCHHHHHHHEEEEEEEEEECC
T ss_pred CC-----h-----HHHHHHHHHhhcCCEEEEEec
Confidence 43 1 246677889999999888754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.35 Score=45.53 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=62.1
Q ss_pred CCCEEEEEC-Ccc-Ccccc---c-CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAG-CGN-GKYLG---L-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiG-cG~-G~~~~---~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----~~~~~~fD~V~~~~~l~ 190 (377)
+|.+||=+| +|. |.++. . ..+++|+++|.++..++.+++.+.......-.++ ....+.+|+|+....
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g-- 248 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH-- 248 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCC--
Confidence 788999998 554 66542 2 3678999999999999999888765443221111 122457999887432
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
-...+..+.+.|+|||.+++.
T Consensus 249 -------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 -------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp -------HHHHHHHHHHHSCTTCEEEEC
T ss_pred -------chhhHHHHHHHhcCCCEEEEE
Confidence 235788899999999998876
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.94 E-value=0.14 Score=48.47 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC----CCCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL----PYRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~----~~~~~~fD~V~~~~~l~ 190 (377)
.+.+|.+||-+|+|. |.++. ...+++|+++|.|+..++.+++.+..... |..+. .. .+.+|+|+....-
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~-~~g~Dvvid~~g~- 267 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMAAH-LKSFDFILNTVAA- 267 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHHTT-TTCEEEEEECCSS-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEe-ccccHHHHHHh-hcCCCEEEECCCC-
Confidence 577899999999975 55432 24678899999999999999887655432 22210 11 1579999865321
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...++...+.|+|+|.+++.-
T Consensus 268 --------~~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 268 --------PHNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp --------CCCHHHHHTTEEEEEEEEECC
T ss_pred --------HHHHHHHHHHhccCCEEEEec
Confidence 124667789999999987753
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=2.7 Score=39.07 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=89.6
Q ss_pred HHHhCCCCCCEEEEECCccCccc-cc----CCCceEEEEeCCHHHHHHHH-----------------------------H
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYL-GL----NPDCFFVGCDISPSLIKICV-----------------------------D 160 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~-~~----~~~~~v~gvD~s~~~~~~a~-----------------------------~ 160 (377)
.++..-++...|+-+|||.=... +. .++..++=||.-..+-...+ .
T Consensus 83 ~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s 162 (334)
T 3iei_A 83 AFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDS 162 (334)
T ss_dssp HHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEEC
T ss_pred HHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCC
Confidence 34443334679999999985432 21 24678999998443322111 0
Q ss_pred cCCeEEEeeCCCC----------CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhh
Q 017080 161 RGHEVLVADAVNL----------PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLV 230 (377)
Q Consensus 161 ~~~~~~~~d~~~~----------~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~ 230 (377)
.+..++.+|+.+. .+..+.-=++++-+++.+++.++ ..++|+.+.+... +|.+++.+...... .
T Consensus 163 ~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~-~~~ll~~ia~~f~-~~~~i~yE~i~p~d--~-- 236 (334)
T 3iei_A 163 KRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQ-SANLLKWAANSFE-RAMFINYEQVNMGD--R-- 236 (334)
T ss_dssp SSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHH-HHHHHHHHHHHCS-SEEEEEEEECCTTS--H--
T ss_pred CceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHH-HHHHHHHHHHhCC-CceEEEEeccCCCC--H--
Confidence 1345677888662 13334456888889999998755 7889998888774 56666666543221 1
Q ss_pred hccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 231 TKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 231 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
....+.........+......+.++++..+.+.++||..
T Consensus 237 -----fg~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~ 275 (334)
T 3iei_A 237 -----FGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWET 275 (334)
T ss_dssp -----HHHHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSE
T ss_pred -----HHHHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCc
Confidence 112222222222223233345678888999999999965
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.49 Score=39.55 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=61.3
Q ss_pred CCEEEEECCcc-Ccccc-c--CC-CceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----C-CCCceeEEEeccchhhc
Q 017080 123 GSLVLDAGCGN-GKYLG-L--NP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----Y-RSDFGDAAISIAVLHHL 192 (377)
Q Consensus 123 ~~~vLDiGcG~-G~~~~-~--~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~-~~~~fD~V~~~~~l~h~ 192 (377)
+.+|+=+|+|. |..+. . .. +.+|+++|.++..++.+++.++.++.+|..+.. . .-..+|+|+...
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~----- 113 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM----- 113 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC-----
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC-----
Confidence 56899999987 65432 1 34 789999999999998888888888888876521 1 234679888742
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++.+ ....+-.+.+.+.|++.++...
T Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 114 PHHQ-GNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp SSHH-HHHHHHHHHHHTTCCSEEEEEE
T ss_pred CChH-HHHHHHHHHHHHCCCCEEEEEE
Confidence 3322 2333444566667777777654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.03 E-value=0.2 Score=46.88 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=63.3
Q ss_pred CCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CCC-------CCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPY-------RSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~~~-------~~~~fD~V~~ 185 (377)
.+.++.+||-+|++ .|..+. ...+++|+++|.++...+.+++.+.... .|..+ ..+ ..+.+|+|+.
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~ 244 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVF-IDFTKEKDIVGAVLKATDGGAHGVIN 244 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEE-EETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceE-EecCccHhHHHHHHHHhCCCCCEEEE
Confidence 46789999999983 455432 2457899999999988888887765533 25432 110 1126899887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ...++.+.+.|++||++++..
T Consensus 245 ~~g-----~----~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 245 VSV-----S----EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp CSS-----C----HHHHHHHTTSEEEEEEEEECC
T ss_pred CCC-----c----HHHHHHHHHHHhcCCEEEEEe
Confidence 643 2 357888999999999987754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.00 E-value=0.34 Score=45.77 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=63.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC----CC-----CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----LP-----YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~~-----~~~~~fD~V~ 184 (377)
.+.+|.+||-+|+|. |.++. ...++ +|+++|.++..++.+++.+..... |..+ +. ...+.+|+|+
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~~~~g~D~vi 267 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFV-NPNDHSEPISQVLSKMTNGGVDFSL 267 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEE-CGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEE-eccccchhHHHHHHHHhCCCCCEEE
Confidence 567899999999865 55432 24567 899999999999999887765432 3221 10 1123689988
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
.... . ...++.+.+.|+|| |.+++.-
T Consensus 268 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 268 ECVG-----N----VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp ECSC-----C----HHHHHHHHHTBCTTTCEEEECS
T ss_pred ECCC-----C----HHHHHHHHHHhhcCCcEEEEEc
Confidence 6432 2 35678899999999 9987754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=90.96 E-value=0.27 Score=46.40 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=63.5
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC----C-----CCCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----L-----PYRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~-----~~~~~~fD~V~ 184 (377)
.+.+|.+||-+|+|. |.++. ...++ +|+++|.++...+.+++.+..... |..+ + ....+.+|+|+
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~i~~~t~gg~Dvvi 266 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL-NPKDYDKPIYEVICEKTNGGVDYAV 266 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE-ecccccchHHHHHHHHhCCCCCEEE
Confidence 567899999999875 55432 24566 899999999999999887765432 2221 1 01124789988
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
-.- .. ...++...+.|+|+ |.+++.-
T Consensus 267 d~~-----g~----~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 267 ECA-----GR----IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp ECS-----CC----HHHHHHHHHTBCTTTCEEEECC
T ss_pred ECC-----CC----HHHHHHHHHHHhcCCCEEEEEc
Confidence 643 22 35678899999999 9987754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.27 Score=45.96 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=63.6
Q ss_pred hCCCCCCEEEEECCccC--cccc---cCC-CceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCC-CceeEE
Q 017080 118 NSLPSGSLVLDAGCGNG--KYLG---LNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRS-DFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G--~~~~---~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~-~~fD~V 183 (377)
..+.++.+||-+|+|.| ..+. ... +++|+++|.++...+.+++.+..... |..+.. ... +.+|+|
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~d~v 244 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVI-NASMQDPLAEIRRITESKGVDAV 244 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEEEE
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEe-cCCCccHHHHHHHHhcCCCceEE
Confidence 45778999999999854 4321 134 78999999999999888776654332 333211 112 579998
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+.... . ...++.+.+.|+|+|.+++.-
T Consensus 245 i~~~g-----~----~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 245 IDLNN-----S----EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp EESCC-----C----HHHHTTGGGGEEEEEEEEECC
T ss_pred EECCC-----C----HHHHHHHHHHHhcCCEEEEEC
Confidence 87543 2 246778889999999987754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.44 Score=44.45 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCCEEEEEC-Ccc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCceeEEEeccchhh
Q 017080 122 SGSLVLDAG-CGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiG-cG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----~~~~~~fD~V~~~~~l~h 191 (377)
+|.+||=+| +|. |.++. ...+++|+++|.++..++.+++.+.......-.++ ....+.+|+|+....
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g--- 226 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN--- 226 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC---
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCC---
Confidence 789999994 544 55432 25678999999999999999887665443221111 012346999887422
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
-...+..+.+.|+|+|.++..
T Consensus 227 ------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 227 ------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEES
T ss_pred ------chHHHHHHHHHhccCCEEEEE
Confidence 245678889999999998654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.58 Score=43.84 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=63.1
Q ss_pred CCCC------CEEEEECCcc-Cccc----c-cCCCce-EEEEeCCHH---HHHHHHHcCCeEEEeeCCCCCCC-----CC
Q 017080 120 LPSG------SLVLDAGCGN-GKYL----G-LNPDCF-FVGCDISPS---LIKICVDRGHEVLVADAVNLPYR-----SD 178 (377)
Q Consensus 120 ~~~~------~~vLDiGcG~-G~~~----~-~~~~~~-v~gvD~s~~---~~~~a~~~~~~~~~~d~~~~~~~-----~~ 178 (377)
+.+| .+||-+|+|. |.++ . ...+++ |+++|.++. ..+.+++.+.... |..+..+. .+
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~~~~~~~i~~~~g 241 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV--DSRQTPVEDVPDVYE 241 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETTTSCGGGHHHHSC
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCCccCHHHHHHhCC
Confidence 4577 8999999865 5554 1 345676 999999998 8899988877655 54432211 23
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+|+|+-.. .. ...++.+.+.|+|||.+++.-
T Consensus 242 g~Dvvid~~-----g~----~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 242 QMDFIYEAT-----GF----PKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CEEEEEECS-----CC----HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECC-----CC----hHHHHHHHHHHhcCCEEEEEe
Confidence 689987643 22 246788899999999988764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.71 E-value=0.36 Score=45.56 Aligned_cols=91 Identities=13% Similarity=0.164 Sum_probs=63.2
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC----CC-----CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----LP-----YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~~-----~~~~~fD~V~ 184 (377)
.+.+|.+||-+|+|. |.++. ...++ +|+++|.++...+.+++.+..... |..+ +. ...+.+|+|+
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~~~~g~D~vi 266 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV-NPQDYKKPIQEVLTEMSNGGVDFSF 266 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEe-cccccchhHHHHHHHHhCCCCcEEE
Confidence 567899999999875 55432 24567 899999999999999887765432 2221 10 1124689988
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
... .. ...++...+.|++| |.+++.-
T Consensus 267 d~~-----g~----~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 267 EVI-----GR----LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp ECS-----CC----HHHHHHHHHHBCTTTCEEEECS
T ss_pred ECC-----CC----HHHHHHHHHHhhcCCcEEEEec
Confidence 653 22 35678889999999 9987753
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.29 Score=45.66 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=62.0
Q ss_pred CCCCCCEEEEECC--ccCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc--G~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||-+|+ |.|..+. ...+++|+++|.++..++.+++.+.... .|..+.. .....+|+|+.
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADET-VNYTHPDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEE-EcCCcccHHHHHHHHhCCCCceEEEE
Confidence 4678899999998 3455432 2457899999999999998887665433 3443321 11247999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ..++.+.+.|+++|.+++..
T Consensus 242 ~~g-~---------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 242 HTG-A---------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp SSC-S---------SSHHHHHHHEEEEEEEEESS
T ss_pred CCC-H---------HHHHHHHHhhccCCEEEEEe
Confidence 654 1 24667788999999887653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.15 Score=47.57 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC---C--CCC-CCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---L--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN---L--PYR-SDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~---~--~~~-~~~fD~V~~~ 186 (377)
.+ +|.+||-+|+|. |.++. . +|+++|+++|.|+...+.+++.+..... |..+ + ... ...+|+|+..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~g~g~D~vid~ 245 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVS-EMKDAESLINKLTDGLGASIAIDL 245 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEE-CHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEe-ccccchHHHHHhhcCCCccEEEEC
Confidence 56 899999999964 55431 1 3488999999999999999887654432 1111 0 011 2369999875
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. . ...++.+.+.|+|||.+++.-
T Consensus 246 ~g-----~----~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 246 VG-----T----EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp SC-----C----HHHHHHHHHHEEEEEEEEECC
T ss_pred CC-----C----hHHHHHHHHHhhcCCEEEEeC
Confidence 32 2 246788899999999987754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=90.64 E-value=0.32 Score=45.69 Aligned_cols=93 Identities=15% Similarity=0.064 Sum_probs=62.1
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-C----CCCCceeEEEeccc
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-P----YRSDFGDAAISIAV 188 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-~----~~~~~fD~V~~~~~ 188 (377)
..+.+|.+||-+|+|. |.++. ...+++|+++|.|+..++.+++.+..... |..+. . .. +.+|+|+....
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~~~~-~~~D~vid~~g 252 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYI-ATLEEGDWGEKYF-DTFDLIVVCAS 252 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEE-EGGGTSCHHHHSC-SCEEEEEECCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEE-cCcCchHHHHHhh-cCCCEEEECCC
Confidence 3577899999999865 55432 24577899999999999998887655432 22211 1 11 47999987643
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-. . ...++.+.+.|+|||.+++.-
T Consensus 253 ~~--~-----~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 253 SL--T-----DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp CS--T-----TCCTTTGGGGEEEEEEEEECC
T ss_pred CC--c-----HHHHHHHHHHhcCCCEEEEec
Confidence 20 0 123455778999999987653
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.39 Score=45.35 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=63.7
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC----CC-----CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----LP-----YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~~-----~~~~~fD~V~ 184 (377)
.+.+|.+||-+|+|. |.++. ...++ +|+++|.++...+.+++.+..... |..+ +. ...+.+|+|+
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~v~~~~~~g~Dvvi 270 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL-NPRELDKPVQDVITELTAGGVDYSL 270 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEE-ccccccchHHHHHHHHhCCCccEEE
Confidence 567899999999875 55432 24567 899999999999999887765433 2221 10 1123689988
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 220 (377)
-.- .. ...++.+.+.|++| |.+++.-.
T Consensus 271 d~~-----G~----~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 271 DCA-----GT----AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp ESS-----CC----HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECC-----CC----HHHHHHHHHHhhcCCCEEEEECC
Confidence 643 22 35688899999999 99887543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.26 Score=46.71 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=64.6
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCC--CCC-------CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV--NLP-------YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~--~~~-------~~~~~fD~V~ 184 (377)
.+.+|.+||=+|+|. |.++. ...++ +|+++|.++..++.+++.+..... |.. +.. ...+.+|+|+
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~i~~~~~gg~D~vi 268 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFV-NPKDHDKPIQEVIVDLTDGGVDYSF 268 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEE-ccccCchhHHHHHHHhcCCCCCEEE
Confidence 567899999999875 55432 24566 899999999999999988765433 222 111 1234799988
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 220 (377)
-.. .. ...+....+.|+|| |.+++.-.
T Consensus 269 d~~-----g~----~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 269 ECI-----GN----VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ECS-----CC----HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECC-----CC----HHHHHHHHHHhhccCCEEEEEcc
Confidence 753 22 35788899999997 99887643
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.27 E-value=0.94 Score=43.20 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=60.9
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.+|.+||=+|+|. |.++. ...++ +|+++|.++.-++.+++.+..... |..+.. .....+|+|+-
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~i~~~t~g~g~D~vid 288 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVI-DPTKENFVEAVLDYTNGLGAKLFLE 288 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE-CTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE-cCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 467899999999865 55432 24577 999999999999999988765443 222211 11236999886
Q ss_pred ccchhhcCChHHHHHHHHHHH----HccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELV----RVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~----r~LkpgG~l~i~~~ 220 (377)
.- .. ....+..+. +.+++||.+++.-.
T Consensus 289 ~~-----g~---~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 289 AT-----GV---PQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp CS-----SC---HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CC-----CC---cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 43 22 222344444 44599999888643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.45 Score=44.07 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.+|.+||-+|++ .|..+. ...+++|+++|.++..++.+++.+..... |..+.. .....+|+|+.
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~-~~~~~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLI-NASKEDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEE-eCCCchHHHHHHHHhCCCCceEEEE
Confidence 56789999999943 355432 25678999999999999999887655432 322211 11346999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...- ..++.+.+.|+|||.+++.-
T Consensus 224 ~~g~----------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 224 SVGK----------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp CCGG----------GGHHHHHHHEEEEEEEEECC
T ss_pred CCCh----------HHHHHHHHHhccCCEEEEEc
Confidence 6432 24667788999999988764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=0.35 Score=45.61 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=63.1
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC----C-----CCCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----L-----PYRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~-----~~~~~~fD~V~ 184 (377)
.+.+|.+||-+|+|. |.++. ...++ +|+++|.|+...+.+++.+..... |..+ + ....+.+|+|+
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~v~~~~~~g~D~vi 265 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI-NPQDFSKPIQEVLIEMTDGGVDYSF 265 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe-ccccccccHHHHHHHHhCCCCCEEE
Confidence 567899999999875 55432 24566 899999999999999887765432 2221 1 01124689988
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
.... . ...++.+.+.|+|+ |.+++.-
T Consensus 266 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 266 ECIG-----N----VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp ECSC-----C----HHHHHHHHHTBCTTTCEEEECS
T ss_pred ECCC-----c----HHHHHHHHHhhccCCcEEEEEe
Confidence 6532 2 35678899999999 9987754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.37 Score=45.36 Aligned_cols=85 Identities=9% Similarity=-0.000 Sum_probs=59.6
Q ss_pred CCEEEEECCcc-Ccccc---cCCCceEEEEeCCH---HHHHHHHHcCCeEEEeeCCCCCCC------CCceeEEEeccch
Q 017080 123 GSLVLDAGCGN-GKYLG---LNPDCFFVGCDISP---SLIKICVDRGHEVLVADAVNLPYR------SDFGDAAISIAVL 189 (377)
Q Consensus 123 ~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~---~~~~~a~~~~~~~~~~d~~~~~~~------~~~fD~V~~~~~l 189 (377)
|.+||-+|+|. |.++. ...+++|+++|.++ ...+.+++.+...+ | .+ .+. .+.+|+|+.....
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v--~-~~-~~~~~~~~~~~~~d~vid~~g~ 256 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY--N-SS-NGYDKLKDSVGKFDVIIDATGA 256 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE--E-CT-TCSHHHHHHHCCEEEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee--c-hH-HHHHHHHHhCCCCCEEEECCCC
Confidence 89999999854 44432 24567999999998 77888887777655 4 43 221 1469999875432
Q ss_pred hhcCChHHHHHHH-HHHHHccccCcEEEEEEc
Q 017080 190 HHLSTESRRKKAI-EELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~~~~~~~~l-~~~~r~LkpgG~l~i~~~ 220 (377)
...+ +.+.+.|+|+|.+++...
T Consensus 257 ---------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 257 ---------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp ---------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred ---------hHHHHHHHHHHHhcCCEEEEEec
Confidence 1245 888999999999877643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.97 E-value=0.49 Score=44.32 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||-.|++ .|..+. ...+++|+++|.++..++.+++.+.... .|..+.. .....+|+|+.
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~ 245 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIE 245 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEE-EeCCCchHHHHHHHHcCCCCcEEEEE
Confidence 56789999999973 355432 2467899999999999988887765533 2433321 11236999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...- ..+....+.|+|||.+++.-
T Consensus 246 ~~G~----------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 246 MLAN----------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp SCHH----------HHHHHHHHHEEEEEEEEECC
T ss_pred CCCh----------HHHHHHHHhccCCCEEEEEe
Confidence 6431 24677889999999987764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=0.43 Score=44.22 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=63.0
Q ss_pred hCCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHH-HHcCCeEEEeeCCCCC-------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKIC-VDRGHEVLVADAVNLP-------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a-~~~~~~~~~~d~~~~~-------~~~~~fD~V~ 184 (377)
..+.+|.+||-+|++ .|..+. ...+++|+++|.++...+.+ ++.+..... |..+.. ...+.+|+|+
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi 223 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAI-DYKNEDLAAGLKRECPKGIDVFF 223 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEE-ETTTSCHHHHHHHHCTTCEEEEE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEE-ECCCHHHHHHHHHhcCCCceEEE
Confidence 357789999999983 355432 25678999999999999988 665654332 333211 1134699988
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....- ..+..+.+.|+|||.+++.-
T Consensus 224 ~~~g~----------~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 224 DNVGG----------EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp ESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred ECCCc----------chHHHHHHHHhhCCEEEEEe
Confidence 75431 36788889999999988764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=89.77 E-value=0.12 Score=47.49 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=39.4
Q ss_pred CeEEEeeCCC-CC-CCCCceeEEEeccchhhcCC-------------h----HHHHHHHHHHHHccccCcEEEEEEc
Q 017080 163 HEVLVADAVN-LP-YRSDFGDAAISIAVLHHLST-------------E----SRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 163 ~~~~~~d~~~-~~-~~~~~fD~V~~~~~l~h~~~-------------~----~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++++++|+.+ +. +++++||+|++.=-.....+ . .....+++++.++|||||.+++...
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 5678888876 32 56789999999633221100 0 0135678899999999999988764
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.36 Score=44.93 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=61.7
Q ss_pred CCCCCCEEEEECCcc--Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGN--GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~--G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.+|.+||-+|+|. |..+. ...+++|+++|.++..++.+++.+..... |..+.. .....+|+|+.
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~-~~~~~~~~~~~~~~~~~~g~Dvvid 219 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVI-DTSTAPLYETVMELTNGIGADAAID 219 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEE-eCCcccHHHHHHHHhCCCCCcEEEE
Confidence 567899999999985 44432 24578999999999999999887665433 332211 12347999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...-. .+.+..+.|+|||.+++.-.
T Consensus 220 ~~g~~----------~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 220 SIGGP----------DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp SSCHH----------HHHHHHHTEEEEEEEEECCC
T ss_pred CCCCh----------hHHHHHHHhcCCCEEEEEee
Confidence 54321 22334589999999887643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=0.45 Score=44.19 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=61.9
Q ss_pred CCCCCCEEEEECC--ccCcccc---cCCCceEEEEeCCHHHHHHHH-HcCCeEEEeeCCCC-CC-------CCCceeEEE
Q 017080 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICV-DRGHEVLVADAVNL-PY-------RSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGc--G~G~~~~---~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~d~~~~-~~-------~~~~fD~V~ 184 (377)
.+.+|.+||-+|+ |.|..+. ...+++|+++|.++..++.++ +.+.... .|..+. .+ ..+.+|+|+
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~vi 230 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDA-FNYKEESDLTAALKRCFPNGIDIYF 230 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEE-EETTSCSCSHHHHHHHCTTCEEEEE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceE-EecCCHHHHHHHHHHHhCCCCcEEE
Confidence 4678999999997 3465432 246789999999999999887 4555433 244321 11 124699998
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.... - ..++...+.|+|||.+++.-
T Consensus 231 ~~~g---------~-~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 231 ENVG---------G-KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp ESSC---------H-HHHHHHHTTEEEEEEEEECC
T ss_pred ECCC---------H-HHHHHHHHHHhcCCEEEEEc
Confidence 7542 1 36788889999999988753
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=0.37 Score=44.53 Aligned_cols=91 Identities=13% Similarity=0.006 Sum_probs=62.9
Q ss_pred CCCCCCEEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.+|.+||-+|+ | .|..+. ...+++|+++|.++..++.+++.+..... |..+.. .....+|+|+.
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~~~~~~~~~g~Dvvid 215 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETI-DYSHEDVAKRVLELTDGKKCPVVYD 215 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE-eCCCccHHHHHHHHhCCCCceEEEE
Confidence 4678999999993 3 365432 24577999999999999999887654332 332211 12347999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...- ..+....+.|+|||.+++.-.
T Consensus 216 ~~g~----------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 216 GVGQ----------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp SSCG----------GGHHHHHTTEEEEEEEEECCC
T ss_pred CCCh----------HHHHHHHHHhcCCCEEEEEec
Confidence 5432 246678899999999888643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=1.5 Score=40.63 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=62.9
Q ss_pred hCCCCCCEEEEECCccCc-cc----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGNGK-YL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~-~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~ 184 (377)
..+.+|.+||=+|+|.+. ++ ....+.+|+++|.++.-++.+++.+..... |..+.. .....+|.++
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i-~~~~~~~~~~v~~~t~g~g~d~~~ 237 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTI-NSGDVNPVDEIKKITGGLGVQSAI 237 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEE-EC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEE-eCCCCCHHHHhhhhcCCCCceEEE
Confidence 356789999999998743 22 235678999999999999999888655433 222211 1123466665
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.... . ...+....+.|+++|.+++.-
T Consensus 238 ~~~~-----~----~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 238 VCAV-----A----RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp ECCS-----C----HHHHHHHHHTEEEEEEEEECC
T ss_pred Eecc-----C----cchhheeheeecCCceEEEEe
Confidence 5322 2 467888899999999988764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.90 E-value=0.39 Score=45.49 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=62.3
Q ss_pred CCCCCEEEEECCcc-Ccccc---cCCC-ceEEEEeCCHHHHHHHHHcCCeEEEeeCC---C--C-----C-CCCCceeEE
Q 017080 120 LPSGSLVLDAGCGN-GKYLG---LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAV---N--L-----P-YRSDFGDAA 183 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~---~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~---~--~-----~-~~~~~fD~V 183 (377)
+.+|.+||-+|+|. |.++. ...+ .+|+++|.|+..++.+++.+..... |.. + + . .....+|+|
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~v~~~~~g~g~Dvv 271 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTL-NRRETSVEERRKAIMDITHGRGADFI 271 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEE-eccccCcchHHHHHHHHhCCCCCcEE
Confidence 67899999999765 55432 2457 5999999999999999987765432 222 1 0 0 112369999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+-... . ...++...+.|+|||.+++.-
T Consensus 272 id~~g-----~----~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 272 LEATG-----D----SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp EECSS-----C----TTHHHHHHHHEEEEEEEEECC
T ss_pred EECCC-----C----HHHHHHHHHHHhcCCEEEEEe
Confidence 86532 1 246778889999999987764
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=88.76 E-value=0.68 Score=43.13 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+ +|.+||-+|+|. |.++. ...++ +|+++|.++..++.+++.+..... |..+.. .....+|+|+.
T Consensus 165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI-NPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEE-CTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-CCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 46 889999999964 55432 24577 999999999999999887665332 332211 11236999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ...++.+.+.|+++|.++..-
T Consensus 243 ~~g-----~----~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 243 FSG-----A----PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp CSC-----C----HHHHHHHHHHEEEEEEEEECC
T ss_pred CCC-----C----HHHHHHHHHHHhcCCEEEEEc
Confidence 532 2 356788899999999987754
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.67 E-value=1.5 Score=34.69 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCEEEEECCcc-Cccc-cc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCC
Q 017080 123 GSLVLDAGCGN-GKYL-GL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 123 ~~~vLDiGcG~-G~~~-~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~ 194 (377)
..+|+=+|+|. |..+ .. ..+.+|+++|.++..++.+++.+..++.+|..+.. ..-..+|+|+... ++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~-----~~ 80 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITG-----SD 80 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECC-----SC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEec-----CC
Confidence 45799999976 5432 21 45789999999999999888888899999987632 1234678887643 23
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+ ....+....+.+. ...++...
T Consensus 81 ~~-~n~~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 81 DE-FNLKILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp HH-HHHHHHHHHHHHC-CCCEEEEE
T ss_pred HH-HHHHHHHHHHHhC-CceEEEEE
Confidence 22 3344445555555 45554443
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=1 Score=42.27 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=62.7
Q ss_pred hCCCCCCEEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~ 185 (377)
..+.+|.+||-+|+ | .|..+. ...+++|+++|.++..++.+++.+..... |..+.. ...+.+|+|+.
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~~~~~~~~g~D~vid 237 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPI-NYKTEPVGTVLKQEYPEGVDVVYE 237 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEE-ecCChhHHHHHHHhcCCCCCEEEE
Confidence 35778999999993 3 365432 24578999999999999998887655432 322211 11246899987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ..++.+.+.|+++|.+++.-
T Consensus 238 ~~g-----~-----~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 238 SVG-----G-----AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp CSC-----T-----HHHHHHHHHEEEEEEEEECC
T ss_pred CCC-----H-----HHHHHHHHHHhcCCEEEEEe
Confidence 543 2 36778889999999987754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=0.8 Score=44.05 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCC
Q 017080 123 GSLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 123 ~~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~ 194 (377)
+.+|+=+|+|. |..+. . ..+..|+++|.++..++.+++.++.++.+|+.+.. ..-...|+|++. +++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~-----~~~ 78 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINA-----IDD 78 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEEC-----CSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEEC-----CCC
Confidence 45799999987 55432 1 46789999999999999999889999999998742 223567887774 334
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++ ....+....+.+.|...++....
T Consensus 79 ~~-~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 79 PQ-TNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp HH-HHHHHHHHHHHHCTTCEEEEEES
T ss_pred hH-HHHHHHHHHHHhCCCCeEEEEEC
Confidence 33 45666777788889877777543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=88.31 E-value=0.91 Score=42.48 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=63.0
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCC-----CCC------CCCCcee
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAV-----NLP------YRSDFGD 181 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~-----~~~------~~~~~fD 181 (377)
..+.+|.+||=+|+|. |.++. ...+++ |+++|.|+.-.+.+++..-..+..... ++. .....+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~D 254 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPA 254 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCC
Confidence 3578899999999865 55432 256775 999999999999988762122211111 110 1234689
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+|+-.. .. ...+..+.+.|+|||.+++.-.
T Consensus 255 vvid~~-----g~----~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 255 VALECT-----GV----ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EEEECS-----CC----HHHHHHHHHHSCTTCEEEECCC
T ss_pred EEEECC-----CC----hHHHHHHHHHhcCCCEEEEEcc
Confidence 988753 22 3578889999999999887643
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=88.28 E-value=0.7 Score=43.85 Aligned_cols=69 Identities=14% Similarity=-0.025 Sum_probs=51.6
Q ss_pred CEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCC--------CCCceeEEEeccchh
Q 017080 124 SLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--GHEVLVADAVNLPY--------RSDFGDAAISIAVLH 190 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~--------~~~~fD~V~~~~~l~ 190 (377)
.++||+-||.|.+.. ...|. .+.++|+++.+++..+.+ +..++.+|+.++.. ....+|+|+..--..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ 82 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ 82 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence 589999999999753 13345 466999999999988877 56788899987631 346799999865544
Q ss_pred hc
Q 017080 191 HL 192 (377)
Q Consensus 191 h~ 192 (377)
.+
T Consensus 83 ~f 84 (376)
T 3g7u_A 83 GF 84 (376)
T ss_dssp TT
T ss_pred Cc
Confidence 43
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.20 E-value=0.73 Score=42.43 Aligned_cols=90 Identities=8% Similarity=-0.019 Sum_probs=61.6
Q ss_pred CCCCCCEEEEECC--ccCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc--G~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||-.|+ |.|..+. ...+++|+++|.++...+.+++.+.... .|..+.. .....+|+++.
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~D~vi~ 215 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQV-INYREEDLVERLKEITGGKKVRVVYD 215 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-EECCCccHHHHHHHHhCCCCceEEEE
Confidence 5678999999994 3355432 2456799999999998888887665433 2433211 11246999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ..++.+.+.|++||.+++.-
T Consensus 216 ~~g-----~-----~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 216 SVG-----R-----DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp CSC-----G-----GGHHHHHHTEEEEEEEEECC
T ss_pred CCc-----h-----HHHHHHHHHhcCCCEEEEEe
Confidence 654 1 34677889999999987754
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=87.74 E-value=0.26 Score=44.82 Aligned_cols=107 Identities=10% Similarity=-0.020 Sum_probs=73.0
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCC-CC---CCCCcee
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVN-LP---YRSDFGD 181 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~-~~---~~~~~fD 181 (377)
+...+..+. +..+||+=+|+|.+... .++.+++.+|.++...+..+++ +++++..|... +. -+..+||
T Consensus 83 yf~~l~~~n-~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fd 161 (283)
T 2oo3_A 83 YISVIKQIN-LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRG 161 (283)
T ss_dssp HHHHHHHHS-SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCE
T ss_pred HHHHHHHhc-CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCcc
Confidence 334443333 45799999999997632 4557999999999999988887 46777777644 21 2345799
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHH--ccccCcEEEEEEcCCC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVR--VVKKGSLVLITVWAVE 223 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r--~LkpgG~l~i~~~~~~ 223 (377)
+|++-=..+.-.+ ..++++.+.+ .+.|+|++++-.+...
T Consensus 162 LVfiDPPYe~k~~---~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 162 LIFIDPSYERKEE---YKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp EEEECCCCCSTTH---HHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred EEEECCCCCCCcH---HHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 9999654442222 5667766665 4568999888766543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=87.60 E-value=0.87 Score=42.35 Aligned_cols=89 Identities=16% Similarity=0.075 Sum_probs=61.4
Q ss_pred CCCCCCEEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~~ 187 (377)
.+.+|.+||-+|+ | .|.++. ...+++|+++ .++..++.+++.+...+ .+-.++. .....+|+|+...
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i-~~~~~~~~~~~~~~~~~g~D~vid~~ 224 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPI-DASREPEDYAAEHTAGQGFDLVYDTL 224 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEE-ETTSCHHHHHHHHHTTSCEEEEEESS
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEe-ccCCCHHHHHHHHhcCCCceEEEECC
Confidence 4678999999994 3 365432 2567899999 89999999988877762 2211111 1124699988753
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. . ..+....+.|+|+|.+++..
T Consensus 225 g-----~-----~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 225 G-----G-----PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp C-----T-----HHHHHHHHHEEEEEEEEESC
T ss_pred C-----c-----HHHHHHHHHHhcCCeEEEEc
Confidence 2 2 36778888999999988753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=86.88 E-value=0.54 Score=43.80 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=61.7
Q ss_pred CCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~~ 187 (377)
.+.+|.+||-+|++ .|..+. ...+++|++++.++...+.+++.+.......-.++. .....+|+|+...
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~ 235 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPI 235 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECC
Confidence 46789999999973 355432 256789999999999999988876554332112211 1123699998754
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.- ..+..+.+.|++||.+++.-
T Consensus 236 g~----------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 236 GG----------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp C------------CHHHHHHTEEEEEEEEEC-
T ss_pred ch----------hHHHHHHHhhcCCCEEEEEE
Confidence 32 24677889999999988764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=86.85 E-value=1.2 Score=43.33 Aligned_cols=90 Identities=24% Similarity=0.295 Sum_probs=63.2
Q ss_pred CCCCCCEEEEECC-cc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC------------------
Q 017080 119 SLPSGSLVLDAGC-GN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY------------------ 175 (377)
Q Consensus 119 ~~~~~~~vLDiGc-G~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~------------------ 175 (377)
.+.+|.+||=+|+ |. |.++. ...++++++++.++.-++.+++.+..... |..+..+
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi-~~~~~d~~~~~~~~~~~~~~~~~~~ 303 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAII-DRNAEGYRFWKDENTQDPKEWKRFG 303 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEE-ETTTTTCCSEEETTEECHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEE-ecCcCcccccccccccchHHHHHHH
Confidence 5678999999997 43 55432 25688999999999999999887765433 2222111
Q ss_pred -------CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 176 -------RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 176 -------~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....+|+|+-... - ..+....+.|+|||.+++.-
T Consensus 304 ~~i~~~t~g~g~Dvvid~~G---------~-~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 304 KRIRELTGGEDIDIVFEHPG---------R-ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHTSCCEEEEEECSC---------H-HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHhCCCCCcEEEEcCC---------c-hhHHHHHHHhhCCcEEEEEe
Confidence 1247999887432 1 46778889999999988754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=1 Score=42.14 Aligned_cols=90 Identities=10% Similarity=-0.061 Sum_probs=61.1
Q ss_pred CCCCCCEEEEECC--ccCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc--G~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||-.|+ |.|..+. ...+++|+++|.++..++.+++.+.... .|..+.. .....+|+++.
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~ 237 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAG-FNYKKEDFSEATLKFTKGAGVNLILD 237 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEE-EecCChHHHHHHHHHhcCCCceEEEE
Confidence 4678899999995 3455432 2467899999999999988877665433 2433211 11246999887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...- ..+....+.|++||.+++.-
T Consensus 238 ~~G~----------~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 238 CIGG----------SYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp SSCG----------GGHHHHHHHEEEEEEEEECC
T ss_pred CCCc----------hHHHHHHHhccCCCEEEEEe
Confidence 6532 13566788999999987764
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=86.16 E-value=1.3 Score=40.89 Aligned_cols=90 Identities=9% Similarity=0.034 Sum_probs=61.3
Q ss_pred CCCCCCEEEEECC--ccCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc--G~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||-.|+ |.|..+. ...+++|+++|.++..++.+++.+.... .|..+.. .....+|+|+.
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~i~~~~~~~~~d~vi~ 220 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHT-INYSTQDFAEVVREITGGKGVDVVYD 220 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE-EECCCHHHHHHHHHHhCCCCCeEEEE
Confidence 4678899999996 3455432 2457899999999988888877665433 2443321 11246999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...- ..++.+.+.|+|||.+++.-
T Consensus 221 ~~g~----------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 221 SIGK----------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp CSCT----------TTHHHHHHTEEEEEEEEECC
T ss_pred CCcH----------HHHHHHHHhhccCCEEEEEe
Confidence 6432 24677889999999987764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.12 E-value=3.4 Score=32.12 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=55.9
Q ss_pred CCEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCC----CCCCceeEEEeccchhhcC
Q 017080 123 GSLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLP----YRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 123 ~~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~ 193 (377)
+++|+=+|+|. |..+. . ..+.+|+.+|.++..++...+. ++.++.+|..+.. ..-..+|+|+..- +
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~-----~ 78 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT-----G 78 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----S
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee-----C
Confidence 46899999876 54322 1 3567999999999888776654 6777777765421 1124679888763 3
Q ss_pred ChHHHHHHHHHHHHccccCcEEEE
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
+.+ ....+.++.+.++++ .+++
T Consensus 79 ~~~-~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 79 KEE-VNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CHH-HHHHHHHHHHHTTCC-CEEE
T ss_pred Cch-HHHHHHHHHHHcCCC-EEEE
Confidence 322 344556666777775 4444
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.12 E-value=1.3 Score=41.36 Aligned_cols=91 Identities=14% Similarity=0.064 Sum_probs=62.2
Q ss_pred CCCCCCEEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC-------CCCceeEEEec
Q 017080 119 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY-------RSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~-------~~~~fD~V~~~ 186 (377)
.+.++.+||-+|+ | .|..+. ...+++|+++|.++..++.+++.+..... |..+..+ ..+.+|+|+..
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~-~~~~~~~~~~~~~~~~~g~Dvvid~ 242 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGI-NYRSEDFAAVIKAETGQGVDIILDM 242 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHHSSCEEEEEES
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEE-eCCchHHHHHHHHHhCCCceEEEEC
Confidence 4678999999954 3 355432 25678999999999999999887655432 3322111 13469999876
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..- ..+....+.|+|||.+++...
T Consensus 243 ~g~----------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 243 IGA----------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp CCG----------GGHHHHHHTEEEEEEEEECCC
T ss_pred CCH----------HHHHHHHHHhccCCEEEEEEe
Confidence 432 246677889999999887643
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=84.84 E-value=0.99 Score=41.42 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=58.5
Q ss_pred EEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC----CCCCCceeEEEeccchhhcCCh
Q 017080 125 LVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL----PYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 125 ~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~----~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
+||=+|+ | .|.++. ...+++|++++.|+...+.+++.+..... |..+. ....+.+|+|+-.- ..
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~d~v~d~~-----g~- 221 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRIL-SRDEFAESRPLEKQLWAGAIDTV-----GD- 221 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEE-EGGGSSCCCSSCCCCEEEEEESS-----CH-
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEE-ecCCHHHHHhhcCCCccEEEECC-----Cc-
Confidence 4999997 3 366542 25678999999999999999887655433 22221 12345799877642 22
Q ss_pred HHHHHHHHHHHHccccCcEEEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..+....+.|+|+|.+++.-
T Consensus 222 ----~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 222 ----KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp ----HHHHHHHHTEEEEEEEEECC
T ss_pred ----HHHHHHHHHHhcCCEEEEEe
Confidence 37888999999999988764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=84.69 E-value=1.2 Score=36.17 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=57.0
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHH-HcCCeEEEeeCCCCC----CCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICV-DRGHEVLVADAVNLP----YRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h 191 (377)
.++.+|+=+|+|. |..+. ...+.+|+++|.++..++.++ ..+..++.+|..+.. ..-..+|+|+..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~---- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT---- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS----
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe----
Confidence 4678999999987 65432 145679999999998777665 456667777764421 1124578888753
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
++.. ....+..+.+.+.|...++..
T Consensus 93 -~~~~-~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 93 -NDDS-TNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp -SCHH-HHHHHHHHHHHTSCCSEEEEE
T ss_pred -CCcH-HHHHHHHHHHHHCCCCeEEEE
Confidence 3322 344455555555555555444
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=83.59 E-value=1.1 Score=43.04 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=33.7
Q ss_pred CCCCCEEEEECCccCcccc-----cCC-CceEEEEeCCHHHHHHHHHc
Q 017080 120 LPSGSLVLDAGCGNGKYLG-----LNP-DCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~-----~~~-~~~v~gvD~s~~~~~~a~~~ 161 (377)
++++..|+|||++.|.++. ..+ ..+|+++|++|...+..+++
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n 271 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV 271 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 4788999999999999642 233 37999999999988777654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=1.8 Score=42.65 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=58.4
Q ss_pred CCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 120 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
..+|.+|+=+|+|. |..+. ...+++|+++|+++...+.+.+.+..+ .+..+. -...|+|+..-.-.++-+
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~--~~l~e~---l~~aDvVi~atgt~~~i~- 344 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV--VTVEEA---IGDADIVVTATGNKDIIM- 344 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE--CCHHHH---GGGCSEEEECSSSSCSBC-
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE--ecHHHH---HhCCCEEEECCCCHHHHH-
Confidence 56789999999987 65432 245679999999999888888777653 232221 135799988643222221
Q ss_pred HHHHHHHHHHHHccccCcEEEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+..+.+||||+++..-
T Consensus 345 -------~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 345 -------LEHIKAMKDHAILGNIG 361 (494)
T ss_dssp -------HHHHHHSCTTCEEEECS
T ss_pred -------HHHHHhcCCCcEEEEeC
Confidence 24667789999876653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=1.2 Score=45.69 Aligned_cols=95 Identities=13% Similarity=0.217 Sum_probs=57.8
Q ss_pred CCCEEEEECCccCccc----cc-------CCC-----ceEEEEeC---CHHHHHHHHHc---------------------
Q 017080 122 SGSLVLDAGCGNGKYL----GL-------NPD-----CFFVGCDI---SPSLIKICVDR--------------------- 161 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~-------~~~-----~~v~gvD~---s~~~~~~a~~~--------------------- 161 (377)
+.-+|+|+|.|+|... .. .|. .+++.++. +...+..+-+.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 4469999999999842 11 122 47999998 55555543211
Q ss_pred -----------CCeEEEeeCCC-CC-CC---CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 162 -----------GHEVLVADAVN-LP-YR---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 162 -----------~~~~~~~d~~~-~~-~~---~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.+++..+|+.+ ++ +. .+.+|.++.-..-.....+.=-..++..+.++++|||.+.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 13455666654 22 21 4689999886532221110001588999999999999754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=83.37 E-value=0.55 Score=42.81 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=59.3
Q ss_pred CCCCCEEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CCCCC--CceeEEEeccchhh
Q 017080 120 LPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPYRS--DFGDAAISIAVLHH 191 (377)
Q Consensus 120 ~~~~~~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~~~~~--~~fD~V~~~~~l~h 191 (377)
+.+|.+||-+|+ | .|..+. ...+++|+++|.++...+.+++.+..... |..+ ..+.+ +.+|+|+. ..-
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~-~~~~~~~~~~~~~~~d~vid-~g~-- 198 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVLE-VRG-- 198 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEEE-CSC--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEE-ECCcchhHHHHhcCceEEEE-CCH--
Confidence 678999999998 3 365432 24677999999999988888877655432 3221 11000 56899987 321
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..++...+.|+|+|.++..-
T Consensus 199 --------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 199 --------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp --------TTHHHHHTTEEEEEEEEEC-
T ss_pred --------HHHHHHHHhhccCCEEEEEe
Confidence 24677889999999987653
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.37 E-value=2.2 Score=39.05 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=59.0
Q ss_pred hCCCCCCEEEEEC-Ccc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-C--CCCceeEEEeccch
Q 017080 118 NSLPSGSLVLDAG-CGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-Y--RSDFGDAAISIAVL 189 (377)
Q Consensus 118 ~~~~~~~~vLDiG-cG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~--~~~~fD~V~~~~~l 189 (377)
..+.+|.+||=+| +|. |.++. ...+++|++++ ++...+.+++.+..... |..+.. + .-..+|+|+-.-.
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~g~D~v~d~~g- 224 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAEQCI-NYHEEDFLLAISTPVDAVIDLVG- 224 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCSEEE-ETTTSCHHHHCCSCEEEEEESSC-
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCCEEE-eCCCcchhhhhccCCCEEEECCC-
Confidence 4678899999997 554 66542 25678999998 55558888887765432 332211 1 1146899887432
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
. ..+....+.|+|||.++..
T Consensus 225 ----~-----~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 225 ----G-----DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp ----H-----HHHHHHGGGEEEEEEEEEC
T ss_pred ----c-----HHHHHHHHhccCCCEEEEe
Confidence 1 2237889999999998875
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.67 E-value=0.68 Score=42.69 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCCCCC-EEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------CCCCCceeEEEec
Q 017080 119 SLPSGS-LVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~-~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~------~~~~~~fD~V~~~ 186 (377)
.+.++. +||-+|+ | .|.++. ...+++|++++.++..++.+++.+..... |..+. ....+.+|+|+-.
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~~~~~~d~vid~ 223 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVL-AREDVMAERIRPLDKQRWAAAVDP 223 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEE-ECC---------CCSCCEEEEEEC
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEE-ecCCcHHHHHHHhcCCcccEEEEC
Confidence 456775 8999997 3 365432 24578999999999888888877654332 22111 1223468998765
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. . ..+....+.|++||.+++.-
T Consensus 224 ~g-----~-----~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 224 VG-----G-----RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp ST-----T-----TTHHHHHHTEEEEEEEEECS
T ss_pred Cc-----H-----HHHHHHHHhhccCCEEEEEe
Confidence 32 1 24667788999999987753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=0.48 Score=44.10 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=59.4
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC-------CCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPY-------RSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~-------~~~~fD~V~~~ 186 (377)
.+ +|.+||-+|+|. |.++. ...++ +|+++|.++..++.+++. .... .|..+..+ ..+.+|+|+..
T Consensus 162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v-~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (343)
T 2dq4_A 162 GV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRL-VNPLEEDLLEVVRRVTGSGVEVLLEF 238 (343)
T ss_dssp CC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEE-ECTTTSCHHHHHHHHHSSCEEEEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhc-cCcCccCHHHHHHHhcCCCCCEEEEC
Confidence 56 889999999854 55432 24577 899999999888777654 3222 23322111 12468998865
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. . ...++...+.|+|+|.+++.-
T Consensus 239 ~g-----~----~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 239 SG-----N----EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp SC-----C----HHHHHHHHHHEEEEEEEEECC
T ss_pred CC-----C----HHHHHHHHHHHhcCCEEEEEe
Confidence 32 2 356788899999999987754
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=82.47 E-value=1.3 Score=39.65 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=63.5
Q ss_pred CCEEEEECCccCccc----c-------cCCCceEEEEe-----CCH----------------------HHHHHH---HH-
Q 017080 123 GSLVLDAGCGNGKYL----G-------LNPDCFFVGCD-----ISP----------------------SLIKIC---VD- 160 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~----~-------~~~~~~v~gvD-----~s~----------------------~~~~~a---~~- 160 (377)
+..|+|+|+-.|..+ . ..+..+|+|+| +.+ ..++.. .+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 458999999999832 1 13567999999 432 112111 11
Q ss_pred --------cCCeEEEeeCCC-CC-----CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 161 --------RGHEVLVADAVN-LP-----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 161 --------~~~~~~~~d~~~-~~-----~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++.++.+++.+ +| .+..+||+|+.-.-. -.. ....+..+...|+|||++++-++.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~---t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEP---TKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHH---HHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cch---HHHHHHHHHHHhCCCcEEEEcCCC
Confidence 257889998876 32 245679999997642 111 457899999999999999988764
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=82.22 E-value=2.4 Score=38.52 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=56.1
Q ss_pred CCEEEEECCcc-Cccc-c--cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHH
Q 017080 123 GSLVLDAGCGN-GKYL-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198 (377)
Q Consensus 123 ~~~vLDiGcG~-G~~~-~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~ 198 (377)
..+|.=||+|. |... . ...+.+|+++|.++..++...+.+......+..+. -...|+|+.. +++....
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~---~~~aDvvi~~-----vp~~~~~ 78 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREF---AGVVDALVIL-----VVNAAQV 78 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTT---TTTCSEEEEC-----CSSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHH---HhcCCEEEEE-----CCCHHHH
Confidence 35899999987 5532 2 14567999999999998888877665433444332 2345888875 4553224
Q ss_pred HHHH---HHHHHccccCcEEE
Q 017080 199 KKAI---EELVRVVKKGSLVL 216 (377)
Q Consensus 199 ~~~l---~~~~r~LkpgG~l~ 216 (377)
..++ +++...++||..++
T Consensus 79 ~~v~~~~~~l~~~l~~g~ivv 99 (303)
T 3g0o_A 79 RQVLFGEDGVAHLMKPGSAVM 99 (303)
T ss_dssp HHHHC--CCCGGGSCTTCEEE
T ss_pred HHHHhChhhHHhhCCCCCEEE
Confidence 4555 56667788876554
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=82.18 E-value=0.54 Score=43.58 Aligned_cols=58 Identities=5% Similarity=0.043 Sum_probs=39.2
Q ss_pred CeEEEeeCCC-CC-CCCCceeEEEeccchhhc-----CC------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 163 HEVLVADAVN-LP-YRSDFGDAAISIAVLHHL-----ST------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 163 ~~~~~~d~~~-~~-~~~~~fD~V~~~~~l~h~-----~~------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..++.+|... +. +++++||+|++.=-.... .+ .......|+++.++|||||.+++..-
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 4567777754 33 567889999986322111 00 01167889999999999999999764
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.14 E-value=1.7 Score=40.91 Aligned_cols=90 Identities=14% Similarity=0.025 Sum_probs=58.9
Q ss_pred CCCCCEEEEEC-Ccc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC-----CCCceeEEEeccch
Q 017080 120 LPSGSLVLDAG-CGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY-----RSDFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiG-cG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~-----~~~~fD~V~~~~~l 189 (377)
+.+|.+||=+| +|. |.++. ...+++|++++ ++...+.+++.+..... |..+..+ ..+.+|+|+....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~-~~~~~~~~~~~~~~~g~D~vid~~g- 257 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVI-DYKSGSVEEQLKSLKPFDFILDNVG- 257 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEE-ETTSSCHHHHHHTSCCBSEEEESSC-
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEE-ECCchHHHHHHhhcCCCCEEEECCC-
Confidence 67889999999 343 66532 24578999999 77778888777655433 3322111 1146899886532
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ....+....+.|++||.++..-
T Consensus 258 ----~---~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 258 ----G---STETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp ----T---THHHHGGGGBCSSSCCEEEESC
T ss_pred ----C---hhhhhHHHHHhhcCCcEEEEeC
Confidence 2 2245677788999999987753
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=81.84 E-value=0.55 Score=43.94 Aligned_cols=69 Identities=10% Similarity=0.028 Sum_probs=49.2
Q ss_pred CEEEEECCccCccccc--CCC---ceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCC---CCCCceeEEEeccchhhc
Q 017080 124 SLVLDAGCGNGKYLGL--NPD---CFFVGCDISPSLIKICVDR--GHEVLVADAVNLP---YRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~--~~~---~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~---~~~~~fD~V~~~~~l~h~ 192 (377)
.+|||+-||.|.+... ..+ ..|.++|+++.+++..+.+ +..++.+|+.++. ++...+|+|+..--...+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 5899999999997521 223 3689999999999999888 4567888998864 112268999987654433
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.76 E-value=7 Score=35.88 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=62.9
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~ 184 (377)
..+.++.+||=.|+|. |.++. ...++ .++++|.++.-++.+++.+..... |..+.. .....+|+|+
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i-~~~~~~~~~~~~~~~~~~g~d~v~ 234 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF-NSSEMSAPQMQSVLRELRFNQLIL 234 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHGGGCSSEEEE
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEE-eCCCCCHHHHHHhhcccCCccccc
Confidence 3567899999999976 33321 23444 678999999999999998765443 222211 1124578876
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
... .. ...++...+.|+|||.+++.-.
T Consensus 235 d~~-----G~----~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 235 ETA-----GV----PQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp ECS-----CS----HHHHHHHHHHCCTTCEEEECCC
T ss_pred ccc-----cc----cchhhhhhheecCCeEEEEEec
Confidence 643 22 3678888899999999887644
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=81.75 E-value=1.1 Score=41.31 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCCCC-EEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEe--eC--CCC-CCCCCceeEEEecc
Q 017080 119 SLPSGS-LVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVA--DA--VNL-PYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~-~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--d~--~~~-~~~~~~fD~V~~~~ 187 (377)
.+.++. +||-+|+ | .|.++. ...+++|++++.++..++.+++.+...... +. ... ....+.+|+|+...
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~ 225 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPV 225 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECC
Confidence 456775 8999997 3 365432 245678999999988888888776543321 11 111 12234689987653
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. . ..+....+.|+|||.+++.-
T Consensus 226 g-----~-----~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 226 G-----G-----KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp C-----T-----HHHHHHHTTEEEEEEEEECC
T ss_pred c-----H-----HHHHHHHHhhcCCCEEEEEe
Confidence 2 2 35778889999999988764
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=80.87 E-value=4.3 Score=37.68 Aligned_cols=91 Identities=11% Similarity=0.100 Sum_probs=62.1
Q ss_pred hCCCCC--CEEEEECCcc--Ccccc---cCCCc-eEEEEeCCHHHHHHHHH-cCCeEEEeeCCCCC-------CCCCcee
Q 017080 118 NSLPSG--SLVLDAGCGN--GKYLG---LNPDC-FFVGCDISPSLIKICVD-RGHEVLVADAVNLP-------YRSDFGD 181 (377)
Q Consensus 118 ~~~~~~--~~vLDiGcG~--G~~~~---~~~~~-~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~-------~~~~~fD 181 (377)
..+.++ .+||-.|++. |..+. ...++ +|+++|.++..++.+++ .+.... .|..+.. ...+.+|
T Consensus 154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~d 232 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAA-INYKKDNVAEQLRESCPAGVD 232 (357)
T ss_dssp SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEE-EETTTSCHHHHHHHHCTTCEE
T ss_pred cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceE-EecCchHHHHHHHHhcCCCCC
Confidence 356788 9999999833 55432 24677 99999999988888876 455432 3443211 1122689
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++.... ...++...+.|++||.+++.-
T Consensus 233 ~vi~~~G----------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 233 VYFDNVG----------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp EEEESCC----------HHHHHHHHHTEEEEEEEEECC
T ss_pred EEEECCC----------HHHHHHHHHHhccCcEEEEEC
Confidence 9887643 145788889999999988753
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=80.71 E-value=0.21 Score=47.43 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=57.9
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeC--C-------------------CCCCC
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADA--V-------------------NLPYR 176 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~--~-------------------~~~~~ 176 (377)
++.+|+=+|+|. |..+. ...|++|+++|.++..++.+.+.+.++...+. . .+.-.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~ 262 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDA 262 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHH
Confidence 567999999997 55432 24577999999999988888877766653221 0 00001
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
-...|+|+..-.+..-+. +.-+-+++.+.+|||++++-
T Consensus 263 l~~aDIVI~tv~iPg~~a---p~Lvt~emv~~MkpGsVIVD 300 (381)
T 3p2y_A 263 ITKFDIVITTALVPGRPA---PRLVTAAAATGMQPGSVVVD 300 (381)
T ss_dssp HTTCSEEEECCCCTTSCC---CCCBCHHHHHTSCTTCEEEE
T ss_pred HhcCCEEEECCCCCCccc---ceeecHHHHhcCCCCcEEEE
Confidence 156799997532221111 22234678888999875443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 377 | ||||
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 8e-08 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 9e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 1e-07 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-07 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 4e-06 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 8e-06 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-05 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 3e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 3e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 4e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 4e-05 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 4e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 6e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-04 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.001 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.001 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 0.002 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 0.002 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 0.003 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.004 |
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 50.1 bits (118), Expect = 8e-08
Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 13/215 (6%)
Query: 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGKYLGLNPD---- 142
K+Y +RV+ S ++ + L + VLD CG G + L D
Sbjct: 3 KEY-YRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE 61
Query: 143 ----CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+ E +V DA L + D I I + H
Sbjct: 62 VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPL-EL 120
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
+ +E+ RV+K ++ + + L + ++ + I R +
Sbjct: 121 NQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFK 180
Query: 259 TLESIPETEDNGSEEQGKE--PKQSVPDKLWESIS 291
+ + N + G E K + E +
Sbjct: 181 SEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVG 215
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 9e-08
Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 34/160 (21%)
Query: 108 AKWPKVATFLN--SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR 161
+ VA ++ + L +D G G G+ + G + + K
Sbjct: 135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 194
Query: 162 GHE----------------VLVADAVNLPYRSDFGDAA-ISIAVLHHLSTESRRKKAIEE 204
E + D ++ +R + + I + ++E
Sbjct: 195 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF---GPEVDHQLKE 251
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
+K+G ++ + K + + + +
Sbjct: 252 RFANMKEGGRIVSS--------KPFAPLNFRINSRNLSDI 283
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 49.2 bits (116), Expect = 1e-07
Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 21/143 (14%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFV 146
++ Y Y H V + G LD GCGNG+ +
Sbjct: 5 DENYFTEKYGLTRTH---------SDVLAAAKVVAPGR-TLDLGCGNGRNSLYLAANGYD 54
Query: 147 GCDISPS---------LIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
+ + + + D L + ++ D +S V+ L +
Sbjct: 55 VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY-DFILSTVVMMFLEAQ-T 112
Query: 198 RKKAIEELVRVVKKGSLVLITVW 220
I + R K G LI
Sbjct: 113 IPGLIANMQRCTKPGGYNLIVAA 135
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 16/120 (13%)
Query: 120 LPSGSLVLDAGCGNGKYLGLNPDCFF--VGCDISPSLIKIC--------VDRGHEVLVAD 169
+ +D GCG G D +P I + ++ D
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90
Query: 170 AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
A + D A+ L ++ + + +K G +++T +E + +++
Sbjct: 91 APEALCKIPDIDIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAILLETKFEAM 144
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 45.5 bits (106), Expect = 4e-06
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Query: 88 KKYVHRVYDAIAPH----FSSTRFAKWPK-VATFLNS-LPSGSLVLDAGCGNGKY-LGLN 140
K YD IA + + ++ + + + +FL L + VLD G G GK+ L L
Sbjct: 2 KLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQ 61
Query: 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
F V + V +A G +A+ LS + K
Sbjct: 62 ERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK 121
Query: 201 AIEELVRVVKKGSLVLITVW 220
A E+ RV+ L++ TV
Sbjct: 122 AFSEIRRVLVPDGLLIATVD 141
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 21/138 (15%)
Query: 92 HRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGC 148
HR+++ K+ + L + G+ +LD G G+G + G
Sbjct: 11 HRIHNPFTEE-------KYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGI 62
Query: 149 DISPSLIKICVDRGHEVLVADAVNLPYRSDFG-------DAAISIAVLHHLSTESRRKKA 201
D+S R E+ V++ V+ + G D A + A
Sbjct: 63 DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIA---GGFAGA 119
Query: 202 IEELVRVVKKGSLVLITV 219
E L + +K G ++LI
Sbjct: 120 EELLAQSLKPGGIMLIGE 137
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 24/128 (18%), Positives = 34/128 (26%), Gaps = 13/128 (10%)
Query: 106 RFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRG 162
+ K G VLD GCG G + G DI+ I R
Sbjct: 8 NANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA 67
Query: 163 HE--------VLVADAVNLPYRSDFGDAAISIA--VLHHLSTESRRKKAIEELVRVVKKG 212
D+ IS + ST A + R ++ G
Sbjct: 68 RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127
Query: 213 SLVLITVW 220
++TV
Sbjct: 128 GYFIMTVP 135
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 22/153 (14%)
Query: 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV- 146
RV+ S R A++ L VLD CG G + L + F V
Sbjct: 24 GEAARVWQLYIGDTRS-RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVT 82
Query: 147 GCDISPSLIKICVDRGHEVLVADAV---------------NLPYRSDFGDAAISIAVLHH 191
D S ++K + A ++P F H
Sbjct: 83 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAH 142
Query: 192 L----STESRRKKAIEELVRVVKKGSLVLITVW 220
L +S + A++ + +V+ G L++I
Sbjct: 143 LPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.8 bits (99), Expect = 3e-05
Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 16/160 (10%)
Query: 91 VHRVYDAIAPHFSS---TRFAKWPKVATFLNSL------PSGSLVLDAGCGNGKYLGLNP 141
++ +Y +A ++ + R + F+ + VLD CG G
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60
Query: 142 DCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG-------DAAISIAVLHHLST 194
+ + + + V R + DA
Sbjct: 61 ERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFD 120
Query: 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234
E +K ++ +K G + + + W
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 42.9 bits (100), Expect = 3e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 13/113 (11%)
Query: 117 LNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV 171
+ + ++D GCG G L + G D +L+ + +
Sbjct: 22 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEF 81
Query: 172 NLPYRS-----DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
+ D D AI A L H + + +++++ VKKG ++
Sbjct: 82 LEGDATEIELNDKYDIAICHAFLLH---MTTPETMLQKMIHSVKKGGKIICFE 131
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 42.3 bits (98), Expect = 4e-05
Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 15/155 (9%)
Query: 94 VYDAIAPHF-----SSTRFAKWPK--VATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCF 144
Y+ A + + + KW + + + LD CG G
Sbjct: 2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN 61
Query: 145 FVGCDISPSLIKICV------DRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
D+S ++ + D NL F + +++
Sbjct: 62 TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDL 121
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 233
KK + + +K+G + + + + + + L
Sbjct: 122 KKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNND 156
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 41.6 bits (96), Expect = 4e-05
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 23/174 (13%)
Query: 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------------- 161
+ G+ VL CG + + VG ++S + ++
Sbjct: 18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77
Query: 162 ---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
G E+ D L R AA R++ ++ L ++ + L+
Sbjct: 78 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137
Query: 219 VWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSE 272
+Q + Q ++ + + TL S G E
Sbjct: 138 TLEYDQALLE--GPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSARGLKAGLE 189
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.8 bits (95), Expect = 2e-04
Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 32/146 (21%)
Query: 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------------- 161
L G +D G G G + GC+I + + +
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273
Query: 162 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
+ + N + + + K +E++++ K G ++
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDED--LNKKVEKILQTAKVGCKIIS 331
Query: 218 TVWAVEQEDKSLVTKWTPLTQKYVEE 243
KSL + + VE
Sbjct: 332 L--------KSLRSLTYQINFYNVEN 349
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (91), Expect = 4e-04
Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 6/115 (5%)
Query: 120 LPSGSLVLDAGCGNGK-----YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP 174
+ G ++D G G+G + + K+ + + + V +
Sbjct: 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK 160
Query: 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
R D + V I++ +K G Q ++L
Sbjct: 161 VR-DISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETL 214
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.0 bits (90), Expect = 6e-04
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 17/152 (11%)
Query: 95 YDAIAPHFS----STRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVG 147
Y H R + L +VLD G G G + +G
Sbjct: 2 YAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIG 61
Query: 148 CDISPSLIKIC-------VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
+ S +D ++ + + D IS + + L ES
Sbjct: 62 IECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNT 121
Query: 201 AIEELVRVVKKGSLVL---ITVWAVEQEDKSL 229
+ + + L+ T++ ED+
Sbjct: 122 VLHARDKWLAPDGLIFPDRATLYVTAIEDRQY 153
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.4 bits (88), Expect = 8e-04
Identities = 29/154 (18%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPS-------LIKICVDRGHEVLVADA 170
+ VLD G G G +G D + + A
Sbjct: 14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73
Query: 171 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLV 230
+LP+ D D HH S +KA+ E+ RV+K+ L+
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDH---------Y 121
Query: 231 TKWTPLTQKYVEEWIGPGSPR-VRSPSARTLESI 263
P+ ++V P VR S +++
Sbjct: 122 APEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAM 155
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 37.8 bits (87), Expect = 0.001
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-----GHEVLVADA 170
L VL G +G + + + + S + ++ L+ DA
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA 113
Query: 171 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
S + + ++ +++ + +K+ V+I V A
Sbjct: 114 SKPWKYSGIVEKV--DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.001
Identities = 22/208 (10%), Positives = 46/208 (22%), Gaps = 50/208 (24%)
Query: 88 KKYVHRVYDAIAPHFSSTRFAKWPK---VATFLNSLPSGSLVLDAGCGNGKY---LGLNP 141
+ Y+ Y K+ TF G ++D G G Y +
Sbjct: 14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS 73
Query: 142 DCFFVGCDISPSLIKICVDRGHE------------------------------------- 164
D + + +
Sbjct: 74 FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKR 133
Query: 165 ----VLVADAVNLPYRSDFGDAAISIAVLHHLS-TESRRKKAIEELVRVVKKGSLVLITV 219
+ P D +++ + + + A+ L ++K G ++ TV
Sbjct: 134 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193
Query: 220 WAVEQE--DKSLVTKWTPLTQKYVEEWI 245
L + VE+ +
Sbjct: 194 TLRLPSYMVGKREFSCVALEKGEVEQAV 221
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 0.001
Identities = 34/236 (14%), Positives = 59/236 (25%), Gaps = 28/236 (11%)
Query: 110 WPKVATF---LNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR 161
+PK + + G VL+AG G+G + + ++ +
Sbjct: 83 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKN 142
Query: 162 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK--------KAIEELVRVV 209
++ P DF IS A S + +
Sbjct: 143 YKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHL 202
Query: 210 KKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269
K G + + V + Q + L+ E I R + N
Sbjct: 203 KHGGVCAVYVVNITQVIE-LLDGIRTCELALSCEKISEV-------IVRDWLVCLAKQKN 254
Query: 270 GSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHR 325
G Q E K + +L + + E + F P H
Sbjct: 255 GILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHW 310
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.8 bits (84), Expect = 0.002
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGH 163
KW + F N P + ++ G G G ++ NPD ++G DI S++ +D+
Sbjct: 23 KWRDL--FGNDNP---IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL 76
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (85), Expect = 0.002
Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKI--CVDRGHEVLVADAVNLP 174
+ VLD GCG G Y P+ G D+S IK VA + LP
Sbjct: 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP 142
Query: 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
+ DA I I EEL RVVK G V+
Sbjct: 143 FSDTSMDAIIRIYAPCKA----------EELARVVKPGGWVITATPG 179
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 36.0 bits (82), Expect = 0.003
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 164
KW V F N P + ++ G G G+++ NPD ++G ++ S+I V + +
Sbjct: 21 KWNTV--FGNDNP---IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD 75
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.004
Identities = 15/138 (10%), Positives = 32/138 (23%), Gaps = 29/138 (21%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----------GLNPDCFFVGCDISPSLIKI- 157
K P + + S +L G G G+ + S I
Sbjct: 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKY 86
Query: 158 ---------------CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAI 202
+ + D I +L+++ +
Sbjct: 87 KELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV---KDIPATL 143
Query: 203 EELVRVVKKGSLVLITVW 220
+ ++ + +LI V
Sbjct: 144 KFFHSLLGTNAKMLIIVV 161
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.91 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.89 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.84 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.82 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.82 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.82 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.81 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.81 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.77 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.77 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.76 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.76 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.75 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.74 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.74 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.72 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.7 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.7 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.7 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.7 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.69 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.67 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.66 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.65 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.61 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.59 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.57 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.53 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.53 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.52 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.51 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.5 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.46 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.45 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.45 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.43 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.37 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.37 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.37 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.37 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.35 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.33 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.33 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.33 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.32 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.3 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.27 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.23 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.2 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.17 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.14 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.14 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.11 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.96 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.94 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.92 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.87 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.8 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.78 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.77 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.76 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.68 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.64 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.59 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.54 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.46 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.39 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.38 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.34 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.34 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.33 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.3 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.28 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.25 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.24 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.19 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.16 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.13 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.12 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.05 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.03 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.0 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.91 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.89 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.87 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.73 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.64 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.54 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.47 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.29 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.27 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.16 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.05 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.03 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.92 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.9 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.85 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.65 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.61 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.59 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.52 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.3 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.11 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.89 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.65 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.59 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.27 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.26 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.05 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.45 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.44 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.06 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.99 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.74 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.73 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.12 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.02 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 91.66 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.0 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 90.96 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 90.78 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.71 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.47 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 90.47 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.01 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.92 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.65 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.39 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 87.46 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 85.82 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 83.93 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 81.68 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 81.46 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 80.77 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.68 |
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=1.2e-24 Score=191.50 Aligned_cols=165 Identities=17% Similarity=0.232 Sum_probs=122.5
Q ss_pred HHHHhhCcccccccc---cchHHHHHHHhCCCCCCEEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcCCeEEEee
Q 017080 93 RVYDAIAPHFSSTRF---AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVAD 169 (377)
Q Consensus 93 ~~y~~~a~~y~~~~~---~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d 169 (377)
++|++++..|+.... ..+......+..+.++.+|||||||+|.++... .+++|+|+|+.|++.|+++++.++++|
T Consensus 4 ~~f~~~a~~Yd~w~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~--~~~~giD~s~~~~~~a~~~~~~~~~~d 81 (208)
T d1vlma_ 4 HIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL--KIKIGVEPSERMAEIARKRGVFVLKGT 81 (208)
T ss_dssp HHHHHTHHHHHHHHHHTHHHHHHHHHHHHHHCCSSCEEEETCTTSTTHHHH--TCCEEEESCHHHHHHHHHTTCEEEECB
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCCeEEEECCCCccccccc--ceEEEEeCChhhccccccccccccccc
Confidence 445555555553111 112222334444556779999999999987543 357999999999999999999999999
Q ss_pred CCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCC
Q 017080 170 AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGS 249 (377)
Q Consensus 170 ~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 249 (377)
++++++++++||+|++..+|+|+++ +..+|++++++|+|||.+++.+++....... .....+.. .
T Consensus 82 ~~~l~~~~~~fD~I~~~~~l~h~~d---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----------~~~~~~~~--~ 146 (208)
T d1vlma_ 82 AENLPLKDESFDFALMVTTICFVDD---PERALKEAYRILKKGGYLIVGIVDRESFLGR----------EYEKNKEK--S 146 (208)
T ss_dssp TTBCCSCTTCEEEEEEESCGGGSSC---HHHHHHHHHHHEEEEEEEEEEEECSSSHHHH----------HHHHTTTC---
T ss_pred ccccccccccccccccccccccccc---cccchhhhhhcCCCCceEEEEecCCcchhHH----------hhhhcccc--c
Confidence 9999999999999999999999999 8899999999999999999998865432111 11111111 1
Q ss_pred CCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 250 PRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
....+...++.+++.++|+++||++
T Consensus 147 ~~~~~~~~~s~~~l~~~l~~~Gf~~ 171 (208)
T d1vlma_ 147 VFYKNARFFSTEELMDLMRKAGFEE 171 (208)
T ss_dssp CCSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred cccccccCCCHHHHHHHHHHcCCeE
Confidence 1233456788999999999999976
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.89 E-value=3.2e-23 Score=184.87 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=114.2
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCce
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~f 180 (377)
+.++++. ..++++.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ +++|+++|++++|+++++|
T Consensus 4 ~~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 4 LAKLMQI-AALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHHh-cCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 3344444 4678899999999999997542 3457999999999999999765 5789999999999999999
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 260 (377)
|+|+|..+++|+++ +.++|++++++|||||++++.++...... . +.... .+...... ..+...++.
T Consensus 83 D~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~---~~~~~-~~~~~~~~-----~~~~~~~~~ 148 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVDNSAPEND--A---FDVFY-NYVEKERD-----YSHHRAWKK 148 (231)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEBCSSH--H---HHHHH-HHHHHHHC-----TTCCCCCBH
T ss_pred ccccccccccccCC---HHHHHHHHHHhcCCCcEEEEEeCCCCCCH--H---HHHHH-HHHHhhcc-----cCcccCCCH
Confidence 99999999999999 88999999999999999999876543211 0 00011 11111211 123456677
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
+++.++++++||++
T Consensus 149 ~~~~~~l~~aGf~~ 162 (231)
T d1vl5a_ 149 SDWLKMLEEAGFEL 162 (231)
T ss_dssp HHHHHHHHHHTCEE
T ss_pred HHHHHHHHHCCCEE
Confidence 89999999999976
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=5.6e-23 Score=184.16 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=112.5
Q ss_pred HHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
....+++|.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++.++++|++++|+++++||+|+|.
T Consensus 10 ~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 89 (234)
T d1xxla_ 10 KTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCR 89 (234)
T ss_dssp HHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred HHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeee
Confidence 334688999999999999997642 3457999999999999999876 5889999999999999999999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
.+++|+++ +..+|+++.|+|||||++++.++...... ....+ ...+. .+.. ..+...++..++..+
T Consensus 90 ~~l~~~~d---~~~~l~~~~r~LkpgG~~~~~~~~~~~~~--~~~~~---~~~~~-~~~~-----~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 90 YAAHHFSD---VRKAVREVARVLKQDGRFLLVDHYAPEDP--VLDEF---VNHLN-RLRD-----PSHVRESSLSEWQAM 155 (234)
T ss_dssp SCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECBCSSH--HHHHH---HHHHH-HHHC-----TTCCCCCBHHHHHHH
T ss_pred ceeecccC---HHHHHHHHHHeeCCCcEEEEEEcCCCCCH--HHHHH---HHHHH-hhCC-----CcccccCCHHHHHHH
Confidence 99999999 89999999999999999999876543211 11111 11111 1111 122345577889999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
++.+||.+
T Consensus 156 ~~~~gf~~ 163 (234)
T d1xxla_ 156 FSANQLAY 163 (234)
T ss_dssp HHHTTEEE
T ss_pred HHHCCCce
Confidence 99999965
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.86 E-value=9.1e-22 Score=181.15 Aligned_cols=139 Identities=17% Similarity=0.086 Sum_probs=110.8
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.++++.+|||||||+|.++.. ..+++|+|+|+|+.|++.|+++ +++++.+|+.++|+++++||+|++..
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 143 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence 578899999999999987532 3578999999999999998875 57899999999999999999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+++ +.++|++++++|||||++++.++....... ......+...+.. ....+.+.+.+++
T Consensus 144 ~l~h~~d---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~s~~~~~~~l 206 (282)
T d2o57a1 144 AFLHSPD---KLKVFQECARVLKPRGVMAITDPMKEDGID------KSSIQPILDRIKL--------HDMGSLGLYRSLA 206 (282)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTCC------GGGGHHHHHHHTC--------SSCCCHHHHHHHH
T ss_pred hhhhccC---HHHHHHHHHHhcCCCcEEEEEEeecCCCCc------hhHHHHHHHHhcc--------CCCCCHHHHHHHH
Confidence 9999999 889999999999999999999876442211 0111122222221 2345677889999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||.+
T Consensus 207 ~~~Gf~~ 213 (282)
T d2o57a1 207 KECGLVT 213 (282)
T ss_dssp HHTTEEE
T ss_pred HHcCCce
Confidence 9999966
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=6e-21 Score=171.11 Aligned_cols=128 Identities=27% Similarity=0.394 Sum_probs=102.1
Q ss_pred HHHHHhhCccccccc----ccchHHHHHH-H-hCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcC-
Q 017080 92 HRVYDAIAPHFSSTR----FAKWPKVATF-L-NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG- 162 (377)
Q Consensus 92 ~~~y~~~a~~y~~~~----~~~~~~~~~~-l-~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~- 162 (377)
.++|++.++.|+... ...+.+.... + ..++++.+|||+|||+|.++.. ..+++|+|+|+|+.|++.|++++
T Consensus 6 ~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~ 85 (246)
T d2avna1 6 WEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV 85 (246)
T ss_dssp HHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc
Confidence 356777777776422 2233333322 2 2456788999999999998753 56789999999999999999984
Q ss_pred CeEEEeeCCCCCCCCCceeEEEec-cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 163 HEVLVADAVNLPYRSDFGDAAISI-AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 163 ~~~~~~d~~~~~~~~~~fD~V~~~-~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
..++.+|++++++++++||+|++. .++||++| +.++|+++.++|||||.+++.+++.
T Consensus 86 ~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d---~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 86 KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp SCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred cccccccccccccccccccceeeecchhhhhhh---HHHHHHHHHhhcCcCcEEEEEECCH
Confidence 457899999999999999999985 68999999 8899999999999999999988653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=1.9e-20 Score=165.66 Aligned_cols=109 Identities=25% Similarity=0.333 Sum_probs=93.3
Q ss_pred HHHHHHh-CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeE
Q 017080 112 KVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 112 ~~~~~l~-~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
.+..++. .++++.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ .+.++.+|+.++++++++||+
T Consensus 26 ~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~ 105 (226)
T d1ve3a1 26 TLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDY 105 (226)
T ss_dssp HHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEE
T ss_pred HHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceE
Confidence 3333443 467888999999999997643 4578999999999999999876 478899999999999999999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|++..+++|+++.+ +.++|+++.++|||||.+++..++
T Consensus 106 I~~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 106 VIFIDSIVHFEPLE-LNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEESCGGGCCHHH-HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEecchhhCChhH-HHHHHHHHHHHcCcCcEEEEEEcC
Confidence 99999999998544 889999999999999999998765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.82 E-value=2.6e-20 Score=165.68 Aligned_cols=140 Identities=10% Similarity=0.070 Sum_probs=108.2
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++ ++.++.+|++++++ +++||+|++..+++|+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d- 96 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDD- 96 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSS-
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecCC-
Confidence 3566899999999998753 4467999999999999999977 68899999998775 689999999999999999
Q ss_pred HHHHHHHHHHH-HccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCC-------CcCCCCCCCcccHHhHh
Q 017080 196 SRRKKAIEELV-RVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSP-------RVRSPSARTLESIPETE 267 (377)
Q Consensus 196 ~~~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-------~~~~~~~~~~~~l~~~l 267 (377)
+..+|++++ ++|||||.+++.+++........ ..+. +...... ...+...++.+++++++
T Consensus 97 --~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l 164 (225)
T d2p7ia1 97 --PVALLKRINDDWLAEGGRLFLVCPNANAVSRQI-AVKM---------GIISHNSAVTEAEFAHGHRCTYALDTLERDA 164 (225)
T ss_dssp --HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHH-HHHT---------TSSSSTTCCCHHHHHTTCCCCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHH-HHHh---------hhhhhhhhcCccccceeeeeccCHHHHHHHH
Confidence 889999998 89999999999988754321111 1010 0000000 11245677899999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 165 ~~~Gf~i 171 (225)
T d2p7ia1 165 SRAGLQV 171 (225)
T ss_dssp HHTTCEE
T ss_pred HHCCCEE
Confidence 9999977
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.4e-20 Score=169.56 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=108.2
Q ss_pred HhCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
...+.||.+|||||||+|.++. ...+++|+|+|+|+.|++.|+++ +++|+++|+.++ +++++||+|++
T Consensus 28 ~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~ 106 (245)
T d1nkva_ 28 VLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAAC 106 (245)
T ss_dssp HTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEE
T ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEE
Confidence 3467899999999999998653 24568999999999999998876 378999999997 46899999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHh
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 265 (377)
..+++|+++ +..++++++++|||||++++.++...... ........|.. .....+.+...+..
T Consensus 107 ~~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~~~~~~~~---------~~~~~~~~~~~-----~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 107 VGATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLP---------ATEEIAQACGV-----SSTSDFLTLPGLVG 169 (245)
T ss_dssp ESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEEETTCC---------SSHHHHHTTTC-----SCGGGSCCHHHHHH
T ss_pred EehhhccCC---HHHHHHHHHHHcCcCcEEEEEeccccCCC---------ChHHHHHHhcc-----CCCcccCCHHHHHH
Confidence 999999999 88999999999999999999875432211 11111122211 11123456778999
Q ss_pred HhhcCCCcc
Q 017080 266 TEDNGSEEQ 274 (377)
Q Consensus 266 ~l~~aGF~~ 274 (377)
.++++||.+
T Consensus 170 ~~~~aG~~~ 178 (245)
T d1nkva_ 170 AFDDLGYDV 178 (245)
T ss_dssp HHHTTTBCC
T ss_pred HHHHcCCEE
Confidence 999999965
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=9.4e-21 Score=168.17 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=105.4
Q ss_pred CCCCCEEEEECCccCccccc--CC-CceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~-~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
..++.+|||||||+|.++.. .+ ..+|+|+|+|+.|++.|+++ +++|+++|++++++++++||+|++..++
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 45668999999999997642 23 34899999999999999886 3689999999999889999999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
+|+++++ ..+++++++++|||||.+++.++....... +. ........+.+.+.+++++
T Consensus 138 ~h~~~~~-~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~-----------------~~----~~~~~~~~~~~~~~~l~~~ 195 (222)
T d2ex4a1 138 GHLTDQH-LAEFLRRCKGSLRPNGIIVIKDNMAQEGVI-----------------LD----DVDSSVCRDLDVVRRIICS 195 (222)
T ss_dssp GGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEEBSSSEE-----------------EE----TTTTEEEEBHHHHHHHHHH
T ss_pred ccchhhh-hhhHHHHHHHhcCCcceEEEEEcccccccc-----------------cc----cCCceeeCCHHHHHHHHHH
Confidence 9999854 678999999999999999998765432110 00 0011223467789999999
Q ss_pred CCCcc
Q 017080 270 GSEEQ 274 (377)
Q Consensus 270 aGF~~ 274 (377)
+||++
T Consensus 196 aGf~i 200 (222)
T d2ex4a1 196 AGLSL 200 (222)
T ss_dssp TTCCE
T ss_pred cCCEE
Confidence 99976
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.81 E-value=6.3e-20 Score=163.04 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=102.9
Q ss_pred CCCCCCEEEEECCccCccc----cc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
.++++.+|||||||||..+ .. .|+++|+|+|+|+.|++.|+++ .+.+..+|+.+ ++.+.+|+|+
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~--~~~~~~d~i~ 113 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH--VEIKNASMVI 113 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT--CCCCSEEEEE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc--cccccceeeE
Confidence 3678899999999999864 22 5889999999999999999985 23445555554 4467899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHh-hhhCCCCC-----C-cCCCCC
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVE-EWIGPGSP-----R-VRSPSA 257 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~-----~-~~~~~~ 257 (377)
+..++||++.++ +.++|++++++|||||.+++.++......... ..+...+..+.. ..+..... . ......
T Consensus 114 ~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (225)
T d1im8a_ 114 LNFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN-HLLIDLHHQFKRANGYSELEVSQKRTALENVMRT 191 (225)
T ss_dssp EESCGGGSCGGG-HHHHHHHHHHHEEEEEEEEEEEECCCSSHHHH-HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCC
T ss_pred EeeeccccChhh-HHHHHHHHHHhCCCCceeecccccccccchhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCC
Confidence 999999997544 88999999999999999999986643321110 000000001000 00000000 0 001235
Q ss_pred CCcccHHhHhhcCCCcc
Q 017080 258 RTLESIPETEDNGSEEQ 274 (377)
Q Consensus 258 ~~~~~l~~~l~~aGF~~ 274 (377)
++.+++.++|+++||+.
T Consensus 192 ~s~~~~~~~L~~aGF~~ 208 (225)
T d1im8a_ 192 DSIETHKVRLKNVGFSQ 208 (225)
T ss_dssp CCHHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHcCCCc
Confidence 67789999999999965
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.3e-18 Score=155.06 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=109.9
Q ss_pred CCCChhhhHHHHHHHHHhhCccccccccc-chHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHH
Q 017080 80 IKSTPELEKKYVHRVYDAIAPHFSSTRFA-KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIK 156 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~y~~~a~~y~~~~~~-~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~ 156 (377)
++..+.+..+.+.+.|++-...|+..... ...+....+..++++.+|||+|||+|..+.. ..|++|+|||+|+.+++
T Consensus 2 ~~~~~~~~~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~ 81 (229)
T d2bzga1 2 VQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQ 81 (229)
T ss_dssp TTTTCCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CcccccCCHHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHH
Confidence 34455777888999997755555433222 2223333334567888999999999997643 56889999999999999
Q ss_pred HHHHc------------------------CCeEEEeeCCCCC-CCCCceeEEEeccchhhcCChHHHHHHHHHHHHcccc
Q 017080 157 ICVDR------------------------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK 211 (377)
Q Consensus 157 ~a~~~------------------------~~~~~~~d~~~~~-~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lkp 211 (377)
.|+++ +++++++|+.+++ ...+.||+|+...+++|++.++ ...+++++.++|||
T Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~-r~~~~~~~~~~Lkp 160 (229)
T d2bzga1 82 EFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD-RKCYADTMFSLLGK 160 (229)
T ss_dssp HHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG-HHHHHHHHHHTEEE
T ss_pred HHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh-hHHHHHHHHhhcCC
Confidence 98764 3678888988864 5678999999999999998755 78999999999999
Q ss_pred CcEEEEEEcCC
Q 017080 212 GSLVLITVWAV 222 (377)
Q Consensus 212 gG~l~i~~~~~ 222 (377)
||.+++..+..
T Consensus 161 gG~~~l~~~~~ 171 (229)
T d2bzga1 161 KFQYLLCVLSY 171 (229)
T ss_dssp EEEEEEEEEEC
T ss_pred cceEEEEEccc
Confidence 99998887654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.77 E-value=3.3e-19 Score=163.77 Aligned_cols=99 Identities=25% Similarity=0.349 Sum_probs=86.8
Q ss_pred CCCCCCEEEEECCccCccc----ccC-CCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLN-PDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~-~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||||||+|.++ ... .+.+|+|+|+|+.+++.|+++ +++|.++|+.+++++ ++||+|++..
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~ 102 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA 102 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEeh
Confidence 4667889999999999864 223 467999999999999999876 468899999998874 5799999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++|+++ +..+|++++++|||||.+++.++.
T Consensus 103 ~l~~~~d---~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 103 FLLHMTT---PETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CGGGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCCC---HHHHHHHHHHHcCcCcEEEEEECC
Confidence 9999999 889999999999999999998864
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.76 E-value=3.8e-19 Score=161.01 Aligned_cols=140 Identities=11% Similarity=0.000 Sum_probs=106.5
Q ss_pred HHHHhCC--CCCCEEEEECCccCccccc--CC-CceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEE
Q 017080 114 ATFLNSL--PSGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 114 ~~~l~~~--~~~~~vLDiGcG~G~~~~~--~~-~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V 183 (377)
..++..+ .++.+|||+|||+|.++.. .+ ...|+++|+|+.|++.|+++ +++|+++|++++++++++||+|
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 162 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI 162 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceE
Confidence 3445444 3567999999999997642 12 34899999999999999986 3688999999999889999999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccH
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESI 263 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l 263 (377)
++..+++|+++++ ..++|++++++|||||.++|.+......... +.. .......+.+.+
T Consensus 163 ~~~~vl~hl~d~d-~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~---------------~d~-----~d~~~~rs~~~~ 221 (254)
T d1xtpa_ 163 VIQWTAIYLTDAD-FVKFFKHCQQALTPNGYIFFKENCSTGDRFL---------------VDK-----EDSSLTRSDIHY 221 (254)
T ss_dssp EEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEBC--CCEE---------------EET-----TTTEEEBCHHHH
T ss_pred Eeeccccccchhh-hHHHHHHHHHhcCCCcEEEEEecCCCCCcce---------------ecc-----cCCceeCCHHHH
Confidence 9999999999854 6799999999999999999987543321000 000 001123466789
Q ss_pred HhHhhcCCCcc
Q 017080 264 PETEDNGSEEQ 274 (377)
Q Consensus 264 ~~~l~~aGF~~ 274 (377)
+++++++||++
T Consensus 222 ~~l~~~aGf~i 232 (254)
T d1xtpa_ 222 KRLFNESGVRV 232 (254)
T ss_dssp HHHHHHHTCCE
T ss_pred HHHHHHcCCEE
Confidence 99999999966
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.76 E-value=1.2e-18 Score=156.60 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=86.3
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEec-cchhh
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~-~~l~h 191 (377)
.++.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ +++++++|+.++++ +++||+|+|. .+++|
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNY 114 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeec
Confidence 4567999999999998643 4567999999999999999875 68999999999876 5689999986 68999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.+.+++.++|++++++|||||.+++..++
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 988777899999999999999999987644
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=5.6e-18 Score=147.31 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=89.1
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeE
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
.+......+.+| +|||||||+|..+.. ..+.+|+|+|+|+.|++.++++ ++.+...|+..+++ +++||+
T Consensus 21 ~~~~~~~~~~~g-rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~ 98 (198)
T d2i6ga1 21 DVLAAAKVVAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDF 98 (198)
T ss_dssp HHHHHHTTSCSC-EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEE
T ss_pred HHHHHcccCCCC-cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccE
Confidence 344445455554 999999999997643 4578999999999999988765 46788889888775 789999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
|++..+++|+++.+ ..++|+++.++|+|||.+++.+...
T Consensus 99 I~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 99 ILSTVVMMFLEAQT-IPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEEESCGGGSCTTH-HHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEEeeeeecCCHHH-HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999998765 7899999999999999999987653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=2.1e-18 Score=155.11 Aligned_cols=100 Identities=17% Similarity=0.269 Sum_probs=84.2
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEec-cchh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~-~~l~ 190 (377)
..++.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++.+.++|+++++++ ++||+|+|. .+++
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 34567999999999997642 4567999999999999999986 589999999999876 589999997 5778
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|+.. +++.++|++++++|||||++++...+
T Consensus 118 ~~~~-~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 118 YFDE-EDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCh-HHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 8754 34889999999999999999987543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=1e-18 Score=160.16 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=103.1
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+++|.+|||||||+|.++.. ..+++|+|+|+|+.+++.|+++ .+.+...|..++ +++||.|++..
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~ 125 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIE 125 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEES
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhh
Confidence 468999999999999997642 4578999999999999999876 234455555444 57899999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhc-ccc----chHHHHhhhhCCCCCCcCCCCCCCccc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTK-WTP----LTQKYVEEWIGPGSPRVRSPSARTLES 262 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~~ 262 (377)
+++|+.+.. +..++++++++|||||.+++.+............. ... ....+......+ .....+.++
T Consensus 126 ~~eh~~~~~-~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifP------gg~lPS~~~ 198 (280)
T d2fk8a1 126 AFEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP------GGRLPSTEM 198 (280)
T ss_dssp CGGGTCGGG-HHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST------TCCCCCHHH
T ss_pred HHHHhhhhh-HHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccC------CCcccchHh
Confidence 999998644 68999999999999999999876543322111000 000 001122222111 123457788
Q ss_pred HHhHhhcCCCcc
Q 017080 263 IPETEDNGSEEQ 274 (377)
Q Consensus 263 l~~~l~~aGF~~ 274 (377)
+.+.++++||++
T Consensus 199 l~~~~e~aGf~v 210 (280)
T d2fk8a1 199 MVEHGEKAGFTV 210 (280)
T ss_dssp HHHHHHHTTCBC
T ss_pred hhhhHHhhcccc
Confidence 999999999977
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.6e-18 Score=154.12 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=111.5
Q ss_pred HHHHHHHHHhhCcccccccccch--HHHHHHHh-CCCCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc
Q 017080 88 KKYVHRVYDAIAPHFSSTRFAKW--PKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR 161 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~~~~~~--~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~ 161 (377)
++|+..+|......+.......+ +.+.+.+. ...++.+|||||||+|.++.. .++. +|+|+|+|+.|++.|+++
T Consensus 14 ~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~ 93 (257)
T d2a14a1 14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKW 93 (257)
T ss_dssp HHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHH
Confidence 46777777665554443221111 23333333 235678999999999987532 3344 799999999999999875
Q ss_pred ----CCe---------------------------------EEEeeC----CCCCCCCCceeEEEeccchhhcCCh-HHHH
Q 017080 162 ----GHE---------------------------------VLVADA----VNLPYRSDFGDAAISIAVLHHLSTE-SRRK 199 (377)
Q Consensus 162 ----~~~---------------------------------~~~~d~----~~~~~~~~~fD~V~~~~~l~h~~~~-~~~~ 199 (377)
... ....+. ...++++++||+|++..++||+... +++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~ 173 (257)
T d2a14a1 94 LKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR 173 (257)
T ss_dssp HHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred HhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHH
Confidence 111 111111 1235678899999999999999642 3478
Q ss_pred HHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 200 KAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.+++++.++|||||.+++.++........ .........++.++++++|++|||++
T Consensus 174 ~~l~~i~~~LkpGG~li~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 174 AALCNLASLLKPGGHLVTTVTLRLPSYMV--------------------GKREFSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp HHHHHHHTTEEEEEEEEEEEESSCCEEEE--------------------TTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HHHHHHHhccCCCcEEEEEEeccccccee--------------------ccccccccCCCHHHHHHHHHHCCCEE
Confidence 99999999999999999998764321100 00111234678899999999999976
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=9.9e-18 Score=154.02 Aligned_cols=151 Identities=14% Similarity=0.174 Sum_probs=104.2
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+++|.+|||||||+|.++.. ..+++|+|+++|+.+++.++++ .+.+...|. ++.+++||.|++..
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~fD~i~sie 134 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDEPVDRIVSLG 134 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCCCCSEEEEES
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---cccccccceEeech
Confidence 578999999999999987642 4578999999999999988876 234444443 45688999999999
Q ss_pred chhhcCCh------HHHHHHHHHHHHccccCcEEEEEEcCCCccchhhh-hccccchHHHHhhhhCCCCCCcCCCCCCCc
Q 017080 188 VLHHLSTE------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLV-TKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260 (377)
Q Consensus 188 ~l~h~~~~------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 260 (377)
+++|+.+. +.+..+++++.++|||||++++.++.......... ....+....-...|.... ........+.
T Consensus 135 ~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky--iFpgg~lps~ 212 (291)
T d1kpia_ 135 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE--IFPGGRLPRI 212 (291)
T ss_dssp CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH--TCTTCCCCCH
T ss_pred hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH--hcCCCCCCCH
Confidence 99999862 23689999999999999999999887543321110 000010001111122111 1111345567
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
.++...++++||++
T Consensus 213 ~~~~~~~e~~gl~v 226 (291)
T d1kpia_ 213 SQVDYYSSNAGWKV 226 (291)
T ss_dssp HHHHHHHHHHTCEE
T ss_pred HHHHhhhccccccc
Confidence 88999999999976
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.2e-17 Score=152.13 Aligned_cols=93 Identities=34% Similarity=0.445 Sum_probs=82.3
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.+.++|+.++|+++++||+|++..+++|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 466799999999999753 47889999999999999999886 789999999999999999999999887765
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+++++|+|||||.+++.+++..
T Consensus 160 -------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 160 -------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp -------HHHHHHHEEEEEEEEEEEECTT
T ss_pred -------HHHHHHHhCCCcEEEEEeeCCc
Confidence 4578999999999999998753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.70 E-value=1.7e-17 Score=149.74 Aligned_cols=103 Identities=23% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCC-CCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY-RSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~-~~~~fD~V~~~~ 187 (377)
++++.+|||||||+|..+.. ....+|+|+|+|+.|++.|+++ ++.+.++|+...++ ..++||+|+|.+
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 57889999999999987543 3445899999999999999875 36789999987665 467899999999
Q ss_pred chhhcC-ChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHHLS-TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~-~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++||+. +.++...+++++.++|||||.+++..++.
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 999974 44457899999999999999999987653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.70 E-value=2e-17 Score=149.34 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=101.7
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.+..+|||||||+|.++ +.+|+..++++|+ +.+++.++++ +++++.+|+.+. . ..+||+|++.
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~ 153 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILS 153 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEE
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c-ccchhheeec
Confidence 3566789999999999865 3489999999998 5678777765 478999998653 2 3579999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
.++||+++++ ..++|++++++|||||+++|.+......... .... ....+..+... .....+.++|.++
T Consensus 154 ~vlh~~~d~~-~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~-~~~~---~~~dl~~~~~~------~g~~rt~~e~~~l 222 (253)
T d1tw3a2 154 FVLLNWPDHD-AVRILTRCAEALEPGGRILIHERDDLHENSF-NEQF---TELDLRMLVFL------GGALRTREKWDGL 222 (253)
T ss_dssp SCGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECCBCGGGCC-SHHH---HHHHHHHHHHH------SCCCCBHHHHHHH
T ss_pred cccccCCchh-hHHHHHHHHHhcCCCcEEEEEeccCCCCCcc-hhHH---HHhhHHHHhhC------CCcCCCHHHHHHH
Confidence 9999998754 6789999999999999999988654322110 0000 00000101100 0223577899999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
++++||++
T Consensus 223 l~~AGf~~ 230 (253)
T d1tw3a2 223 AASAGLVV 230 (253)
T ss_dssp HHHTTEEE
T ss_pred HHHCCCeE
Confidence 99999977
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=4.2e-17 Score=149.29 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=105.6
Q ss_pred CCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.+|.+|||||||+|.++. ...+++|+|+++|+.+++.|+++ ++++..+|...+ +++||.|++.+
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~---~~~fD~i~si~ 135 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---DEPVDRIVSIG 135 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---CCCCSEEEEES
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---cccccceeeeh
Confidence 47899999999999998653 24579999999999999999876 467888887766 47899999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc-----cchHHHHhhhhCCCCCCcCCCCCCCccc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT-----PLTQKYVEEWIGPGSPRVRSPSARTLES 262 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 262 (377)
+++|+.... ...+++++.++|||||++++.++.............. .....+.....-+ .....+..+
T Consensus 136 ~~eh~~~~~-~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFp------gg~lPsl~~ 208 (285)
T d1kpga_ 136 AFEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP------GGRLPSIPM 208 (285)
T ss_dssp CGGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST------TCCCCCHHH
T ss_pred hhhhcCchh-HHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhcc------CCCCCChhh
Confidence 999996533 6899999999999999999988764322111000000 0011122222221 123456788
Q ss_pred HHhHhhcCCCcc
Q 017080 263 IPETEDNGSEEQ 274 (377)
Q Consensus 263 l~~~l~~aGF~~ 274 (377)
+..+++++||.+
T Consensus 209 ~~~~~e~agf~v 220 (285)
T d1kpga_ 209 VQECASANGFTV 220 (285)
T ss_dssp HHHHHHTTTCEE
T ss_pred HHHHHHHhchhh
Confidence 999999999976
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.69 E-value=1.4e-17 Score=143.74 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=87.6
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------------------CCeEEEeeCCCCC-CC
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------------------GHEVLVADAVNLP-YR 176 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~~~-~~ 176 (377)
.+++|.+|||+|||+|..+.. ..|.+|+|+|+|+.|++.|+++ .+.++.+|+..++ ..
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 467899999999999997643 4588999999999999999985 2578888888876 34
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
..+||+|++..+++|++++. ...++++++++|||||.+++.....
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~-~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADM-RERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHH-HHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccceeEEEEEeeeEecchhh-hHHHHHHHHHhcCCCcEEEEEEccc
Confidence 57899999999999998755 7899999999999999998876543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3e-17 Score=150.24 Aligned_cols=139 Identities=15% Similarity=0.006 Sum_probs=98.2
Q ss_pred CCCCEEEEECCccCcccc--------cCCC--ceEEEEeCCHHHHHHHHHc-----C---CeE--EEeeCCC------CC
Q 017080 121 PSGSLVLDAGCGNGKYLG--------LNPD--CFFVGCDISPSLIKICVDR-----G---HEV--LVADAVN------LP 174 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--------~~~~--~~v~gvD~s~~~~~~a~~~-----~---~~~--~~~d~~~------~~ 174 (377)
++..+|||||||+|.++. .+++ ..++|+|+|+.|++.++++ + +.+ ...+++. .+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 344589999999998631 1333 4789999999999999876 1 222 2323221 24
Q ss_pred CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCC
Q 017080 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRS 254 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 254 (377)
.++++||+|++.+++||+++ +..+|++++++|+|||.+++..+........+ ...+ |... .....
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l-------~~~~---~~~~--~~~~~ 183 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL-------WKKY---GSRF--PQDDL 183 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHH-------HHHH---GGGS--CCCTT
T ss_pred CCCCceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEEecCcchHHHH-------HHHH---HHhc--CCCcc
Confidence 56899999999999999999 89999999999999999999987654322111 1111 2111 12223
Q ss_pred CCCCCcccHHhHhhcCCCcc
Q 017080 255 PSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 255 ~~~~~~~~l~~~l~~aGF~~ 274 (377)
..+.+.+.+.++|++.||..
T Consensus 184 ~~~~~~~~~~~~L~~~G~~~ 203 (280)
T d1jqea_ 184 CQYITSDDLTQMLDNLGLKY 203 (280)
T ss_dssp SCCCCHHHHHHHHHHHTCCE
T ss_pred cccCCHHHHHHHHHHCCCce
Confidence 45677788999999999954
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.1e-16 Score=142.31 Aligned_cols=167 Identities=16% Similarity=0.094 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhCccccccc-ccch--HHHHHHHh-CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHH
Q 017080 88 KKYVHRVYDAIAPHFSSTR-FAKW--PKVATFLN-SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~~-~~~~--~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~ 160 (377)
++|+..+|......+...+ ...+ +.+.+.+. ....|.+|||||||+|.+... ....+|+|+|+|+.|++.+++
T Consensus 16 ~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~ 95 (263)
T d2g72a1 16 RAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGR 95 (263)
T ss_dssp HHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHH
Confidence 4677777765444333211 1111 23333332 344678999999999986432 223489999999999999886
Q ss_pred c----C---------------------------------CeEEEeeCCC------CCCCCCceeEEEeccchhhcC-ChH
Q 017080 161 R----G---------------------------------HEVLVADAVN------LPYRSDFGDAAISIAVLHHLS-TES 196 (377)
Q Consensus 161 ~----~---------------------------------~~~~~~d~~~------~~~~~~~fD~V~~~~~l~h~~-~~~ 196 (377)
+ . ......|+.. .+...++||+|++..++||+. +.+
T Consensus 96 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~ 175 (263)
T d2g72a1 96 WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA 175 (263)
T ss_dssp HHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH
T ss_pred HHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHH
Confidence 4 0 0223445543 224457899999999999996 434
Q ss_pred HHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 197 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
++.++|++++++|||||.+++..+...... .. .........++.++++++|+++||++
T Consensus 176 ~~~~~l~~~~~~LkPGG~li~~~~~~~~~~-------------------~~-~~~~~~~~~~t~e~v~~~l~~aGf~v 233 (263)
T d2g72a1 176 SFQRALDHITTLLRPGGHLLLIGALEESWY-------------------LA-GEARLTVVPVSEEEVREALVRSGYKV 233 (263)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEEESCCEE-------------------EE-TTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEecccCCccc-------------------cc-CCcccccCCCCHHHHHHHHHHCCCeE
Confidence 488999999999999999999876432110 00 00001134578899999999999976
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.65 E-value=2.9e-16 Score=141.92 Aligned_cols=142 Identities=20% Similarity=0.178 Sum_probs=99.7
Q ss_pred CCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
+.+..+|||||||+|.++ +.+|+.+++++|+ |.+++.++++ ++.++.+|+.+ +.+ ..||+|++.+
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF 155 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence 456689999999999975 3489999999998 7788877764 46778888765 333 4599999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
++||+++++ ..++|++++++|||||+++|.++......... ..........+-.+.. ....+.++|++++
T Consensus 156 vLh~~~d~~-~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~-~~~~~~~d~~ml~~~~--------g~~rt~~e~~~ll 225 (256)
T d1qzza2 156 VLLNWSDED-ALTILRGCVRALEPGGRLLVLDRADVEGDGAD-RFFSTLLDLRMLTFMG--------GRVRTRDEVVDLA 225 (256)
T ss_dssp CGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCH--------HHHHHHHHHHHHHHHS--------CCCCCHHHHHHHH
T ss_pred cccccCcHH-HHHHHHHHHhhcCCcceeEEEEeccCCCCccc-HHHHHHHHHHHHhhCC--------CccCCHHHHHHHH
Confidence 999998755 67899999999999999999986532221110 0000000100001111 2335778999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
++|||++
T Consensus 226 ~~AGf~~ 232 (256)
T d1qzza2 226 GSAGLAL 232 (256)
T ss_dssp HTTTEEE
T ss_pred HHCCCce
Confidence 9999977
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.61 E-value=2e-16 Score=140.39 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC-CCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-YRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~-~~~~~fD~V~~~~~ 188 (377)
.+.||.+|||+|||+|..+ ...|+..|+|+|+|+.|++.++.+ ++..+..|....+ +.+..+|++++...
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence 4678999999999999864 346888999999999999998875 5677888877743 56678888888888
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++|..+ +..++.++.+.|||||.+++....
T Consensus 151 ~~~~~~---~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 151 VAQPNQ---AEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccchHH---HHHHHHHHHHhcccCceEEEEeec
Confidence 888876 889999999999999999998754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=2e-15 Score=138.80 Aligned_cols=101 Identities=23% Similarity=0.305 Sum_probs=77.5
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC---CCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP---YRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~---~~~~~fD~V~ 184 (377)
.++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.|+++ ...+...++..++ ...++||+|+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~ 134 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 134 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence 4567999999999997642 4578999999999999999875 2334444443321 2357899999
Q ss_pred ecc-chhhcCCh----HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIA-VLHHLSTE----SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~-~l~h~~~~----~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|.+ +++|+++. ++...+|++++++|||||++++..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 864 89999763 34778999999999999999997654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=8.7e-16 Score=138.05 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=78.1
Q ss_pred CCCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
...+|.+|||+|||+|.++. ...+++|+|+|+|+.+++.|+++ ++++.++|+.+ .++.++||+|+++...+
T Consensus 117 ~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 117 HLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp HCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred hcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence 45789999999999999753 24578999999999999999976 46788888765 35578999999976555
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. ...+++++.++|||||+++++.+
T Consensus 196 ~------l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 196 L------HAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp H------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c------HHHHHHHHHHhcCCCcEEEEEec
Confidence 3 46788999999999999999764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.6e-15 Score=133.26 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=77.6
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCC--CCCCCCceeEEE-----
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN--LPYRSDFGDAAI----- 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~--~~~~~~~fD~V~----- 184 (377)
.+|.+|||||||+|..+.. ....+|+|+|+|+.+++.|+++ ++.++..|+.. .++++++||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 5788999999999987642 3456899999999999999987 34556666554 346788999987
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+...++|+.+ +..++++++|+|||||++++..
T Consensus 132 ~~~~~~~~~~---~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 132 LSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccC---HHHHHHHHHHHcCCCcEEEEEe
Confidence 4677788877 8899999999999999988743
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=8.7e-15 Score=131.76 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=88.6
Q ss_pred HHHHhCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCC
Q 017080 114 ATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSD 178 (377)
Q Consensus 114 ~~~l~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~ 178 (377)
+-....+.||++|||+|||+|.++. ..|..+|+++|+++.+++.|+++ ++.+.++|+.+.+++++
T Consensus 88 Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~ 167 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 167 (264)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred HHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCC
Confidence 3344568899999999999999752 27899999999999999999875 57889999998888899
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+||.|++ |+++ +..++.++.++|||||.+++..++.+
T Consensus 168 ~fDaV~l-----dlp~---P~~~l~~~~~~LkpGG~lv~~~P~i~ 204 (264)
T d1i9ga_ 168 SVDRAVL-----DMLA---PWEVLDAVSRLLVAGGVLMVYVATVT 204 (264)
T ss_dssp CEEEEEE-----ESSC---GGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred CcceEEE-----ecCC---HHHHHHHHHhccCCCCEEEEEeCccC
Confidence 9999986 6888 78999999999999999999887754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.52 E-value=1.1e-14 Score=124.93 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=82.7
Q ss_pred hCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
..+.++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ +++++++|+.+.+.....||+|++..
T Consensus 29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred cCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 3678899999999999987532 4566999999999999999986 57889999988777778999999987
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..++ ...+++.+.+.|||||++++....
T Consensus 109 ~~~~------~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 109 SGGE------LQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp CTTC------HHHHHHHHHHTEEEEEEEEEEECB
T ss_pred cccc------chHHHHHHHHHhCcCCEEEEEeec
Confidence 6654 467899999999999999887643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.51 E-value=2.6e-14 Score=123.39 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=80.7
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+|||+|.++.. ..+.+|+++|+|+.+++.++++ ++++..+|+.+ ++++++||+|++..
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~ 127 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP 127 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc
Confidence 356788999999999986532 3456899999999999999875 36778888876 56688999999998
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++|+..+. ...+++++.++|||||.+++...
T Consensus 128 p~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 128 PIRAGKEV--LHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CSTTCHHH--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEecchh--hhhHHHHHHHhcCcCcEEEEEEe
Confidence 88765542 46899999999999999988653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=1.1e-14 Score=127.25 Aligned_cols=100 Identities=15% Similarity=0.053 Sum_probs=78.5
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEE-eccc
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAI-SIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~-~~~~ 188 (377)
.++||.+|||+|||+|..+ ...+..+|+|+|+|+.|++.++++ ++.++..|+...+.....+|.+. +...
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence 4789999999999999854 336777999999999999988765 78889999888655454444332 2334
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.|..+ ...+++++.++|||||.+++....
T Consensus 133 ~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 133 IAQKNQ---IEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccChhh---HHHHHHHHHHHhccCCeEEEEEEc
Confidence 566555 789999999999999999998753
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=4.7e-14 Score=123.57 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=78.8
Q ss_pred CCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+++|.+|||||||+|.++. ..+...|+++|+++.+++.|+++ ++.++.+|+.+.+..+++||+|++.
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~ 151 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT 151 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhh
Confidence 57899999999999999653 25788999999999999999986 5678889988877778899999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+++|+++ ++.+.|||||++++..
T Consensus 152 ~~~~~~p~---------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 152 VGVDEVPE---------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp SBBSCCCH---------HHHHHEEEEEEEEEEB
T ss_pred ccHHHhHH---------HHHHhcCCCcEEEEEE
Confidence 99999875 2567899999998854
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.45 E-value=4.4e-14 Score=122.73 Aligned_cols=97 Identities=18% Similarity=0.288 Sum_probs=81.3
Q ss_pred CCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEeccch
Q 017080 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAVL 189 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~~~l 189 (377)
...|||||||+|.++ ...|+..++|+|+++.++..+.++ |+.++.+|+..+. ++++++|.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 448999999999964 348999999999999999888765 6899999998865 789999999999888
Q ss_pred hhcCChHH-----HHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.|...... ...+|++++|+|||||.|.|.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 77654210 1479999999999999999975
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=8.5e-14 Score=122.77 Aligned_cols=100 Identities=21% Similarity=0.200 Sum_probs=82.2
Q ss_pred HHHHHHh-CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC
Q 017080 112 KVATFLN-SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL 173 (377)
Q Consensus 112 ~~~~~l~-~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~ 173 (377)
.+.+.+. .+.+|.+|||||||+|..+. . .+..+|+++|+++.+++.|+++ ++.+..+|+...
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 3444443 56899999999999998642 2 6788999999999999998765 467889999887
Q ss_pred CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 174 ~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+..+++||+|++..+++++++ ++.+.|||||++++...
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~---------~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ---------ALIDQLKPGGRLILPVG 182 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH---------HHHHTEEEEEEEEEEES
T ss_pred cchhhhhhhhhhhcchhhcCH---------HHHhhcCCCcEEEEEEc
Confidence 777889999999999998875 26789999999998754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.43 E-value=9.1e-14 Score=124.17 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=82.3
Q ss_pred hCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
..+.||++|||+|||+|.++. . .+..+|+++|+++.+++.|+++ ++++..+|+.+. +++++||.|+
T Consensus 81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ 159 (250)
T d1yb2a1 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVI 159 (250)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEE
T ss_pred cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeee
Confidence 457899999999999998642 2 6888999999999999999986 578899998875 4678999998
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+ ++++ +..+|.++.++|||||++++..++.
T Consensus 160 l-----d~p~---p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 160 A-----DIPD---PWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp E-----CCSC---GGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred e-----cCCc---hHHHHHHHHHhcCCCceEEEEeCCc
Confidence 6 4777 6789999999999999999987654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.37 E-value=7.6e-13 Score=114.76 Aligned_cols=97 Identities=18% Similarity=0.322 Sum_probs=78.8
Q ss_pred CCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEeccch
Q 017080 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAVL 189 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~~~l 189 (377)
...|||||||+|.++ ...|+..++|+|+++.++..|.++ |+.++.+|+..+. ++++++|.|++.+.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 348999999999965 348999999999999999887664 7899999998865 778999999987765
Q ss_pred hhcCChHH-----HHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.|...... ...+|+.+.++|||||.|.+.+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 54332110 1589999999999999999876
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.3e-13 Score=128.57 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=78.4
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCCCCCCC
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVNLPYRSD 178 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~~~~~~~ 178 (377)
.+.++.+|||||||+|.++. ..+...++|+|+|+.+++.|++. +++++++|+.+.++.+.
T Consensus 148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~ 227 (328)
T d1nw3a_ 148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER 227 (328)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence 47889999999999998652 35666899999999999888753 47899999999887666
Q ss_pred ce--eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 179 FG--DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 179 ~f--D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+ |+|++. .+.|.++ +...|.++.++|||||++++..
T Consensus 228 ~~~advi~~~-~~~f~~~---~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 228 IANTSVIFVN-NFAFGPE---VDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHCSEEEEC-CTTTCHH---HHHHHHHHHTTCCTTCEEEESS
T ss_pred cCcceEEEEc-ceecchH---HHHHHHHHHHhCCCCcEEEEec
Confidence 55 566654 4556666 8899999999999999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=2.7e-13 Score=126.50 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=77.2
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+|++|||||||+|.++.. ....+|+|+|.|+ +++.|++. ++.++.+|+.++++++++||+|++..+.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 4688999999999987532 3334899999997 44555543 4788999999999999999999998887
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
+++..+..+..++..+.++|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 777665547889999999999999875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.37 E-value=3.1e-13 Score=120.58 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=97.6
Q ss_pred CCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.....+|||||||+|.++ +.+|+.+++.+|+ |..++.+... +++++.+|+.+ +.| ..|++++..++|+.++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~d 154 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSD 154 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCH
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCH
Confidence 345689999999999975 3489999999998 4444433322 68999999875 333 3499999999999988
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchh-hhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS-LVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEE 273 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~ 273 (377)
++ ..++|+++++.|+|||.++|.+...+..... .............-.... ....+.++|.+++++|||+
T Consensus 155 e~-~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~--------g~ert~~e~~~ll~~AGF~ 225 (244)
T d1fp1d2 155 EK-CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG--------GRERTEKQYEKLSKLSGFS 225 (244)
T ss_dssp HH-HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS--------CCCEEHHHHHHHHHHTTCS
T ss_pred HH-HHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCC--------CcCCCHHHHHHHHHHcCCC
Confidence 66 7899999999999999999998654322110 000000000000000111 2235678999999999996
Q ss_pred c
Q 017080 274 Q 274 (377)
Q Consensus 274 ~ 274 (377)
.
T Consensus 226 ~ 226 (244)
T d1fp1d2 226 K 226 (244)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.1e-13 Score=122.65 Aligned_cols=99 Identities=20% Similarity=0.141 Sum_probs=79.9
Q ss_pred CCCCCCEEEEECCccCcccc--cCCC-ceEEEEeCCHHHHHHHHH---c----CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVD---R----GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~--~~~~-~~v~gvD~s~~~~~~a~~---~----~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++++|||||||+|.++. ...| .+|+|+|+|+.+....+. + ++.++.+|+.++++++++||+|++..+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44578999999999999753 2234 489999999988644332 2 478999999999988999999999888
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
.+++..+..+..++....++|||||.++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 88877665577888888999999999874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=1.1e-12 Score=118.40 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=79.7
Q ss_pred HHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCcee
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD 181 (377)
-....+.||.+|||+|||+|.++. . .++++|+++|+++.+++.|+++ ++.+...|+.. .+....||
T Consensus 96 i~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D 174 (266)
T d1o54a_ 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVD 174 (266)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEE
T ss_pred HHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-ccccccee
Confidence 344568999999999999998642 2 6889999999999999999987 34555666543 35567899
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.|+. ++++ +..+|+++.++|||||.+++..++.
T Consensus 175 ~V~~-----d~p~---p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 175 ALFL-----DVPD---PWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp EEEE-----CCSC---GGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred eeEe-----cCCC---HHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 8764 7888 7899999999999999999987654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=4.1e-13 Score=124.60 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=77.4
Q ss_pred CCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHH---Hc----CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICV---DR----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~---~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+|++|||||||+|.++.. ..| .+|+|+|+|+.+....+ .+ ++.++.+|+.+++++.++||+|++..+.+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 4688999999999996532 234 48999999986543322 22 47899999999999899999999988877
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
++..+..+..++..+.++|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 776554478999999999999999864
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-12 Score=120.88 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=80.7
Q ss_pred HHHhCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc------------------CCeEEEeeCC
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR------------------GHEVLVADAV 171 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~------------------~~~~~~~d~~ 171 (377)
-.+..+.||++|||+|||+|.++. ..+..+|+++|+++.+++.|+++ ++.+...|+.
T Consensus 91 l~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~ 170 (324)
T d2b25a1 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS 170 (324)
T ss_dssp HHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred HHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchh
Confidence 334468999999999999999742 27889999999999999999875 4778899988
Q ss_pred CCC--CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 172 NLP--YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 172 ~~~--~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+.. +++.+||.|++ .+++ +..+|.++.++|||||++++..++.+
T Consensus 171 ~~~~~~~~~~fD~V~L-----D~p~---P~~~l~~~~~~LKpGG~lv~~~P~i~ 216 (324)
T d2b25a1 171 GATEDIKSLTFDAVAL-----DMLN---PHVTLPVFYPHLKHGGVCAVYVVNIT 216 (324)
T ss_dssp CCC-------EEEEEE-----CSSS---TTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred hcccccCCCCcceEee-----cCcC---HHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 753 45778999986 4677 67899999999999999999887754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=2.1e-12 Score=113.68 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=77.9
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCC---CCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNL---PYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~---~~~~~~fD~V~~ 185 (377)
.+.||++|||+|||+|.++. . .+...|+|+|+|+.|++.++.+ ++..+..|+... +.....+|+|++
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE
Confidence 36799999999999999753 2 6889999999999999998876 466777887653 334567888876
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. +.|..+ ...+++++.+.|||||.++++...
T Consensus 150 d--~~~~~~---~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 150 D--VAQPTQ---AKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp C--CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred E--ccccch---HHHHHHHHHHhcccCCeEEEEEEC
Confidence 3 444444 788999999999999999998654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.30 E-value=1.2e-12 Score=114.92 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=76.9
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+.++.+|||||||+|.++.. ....+|+++|+++.+++.|+++ ++.++.+|........++||.|++..++++
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ 146 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhh
Confidence 578999999999999997642 3457999999999999999886 688999998775445788999999999988
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++ .+.+.|||||++++..
T Consensus 147 ip~---------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 147 LLC---------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp CCH---------HHHHTEEEEEEEEEEE
T ss_pred hhH---------HHHHhcCCCCEEEEEE
Confidence 875 2457899999998864
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.27 E-value=2.9e-12 Score=114.21 Aligned_cols=140 Identities=12% Similarity=0.104 Sum_probs=96.8
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
...+|||||||+|.++ ..+|+.+++..|+ |..++.+... +++++.+|+.+. .+ .+|++++..+||++++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d~~ 155 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTS-IP--NADAVLLKYILHNWTDKD 155 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTC-CC--CCSEEEEESCGGGSCHHH
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecCcccC-CC--CCcEEEEEeecccCChHH
Confidence 3468999999999975 3489999999998 4455444333 789999999763 22 579999999999999866
Q ss_pred HHHHHHHHHHHccccC---cEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCc
Q 017080 197 RRKKAIEELVRVVKKG---SLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEE 273 (377)
Q Consensus 197 ~~~~~l~~~~r~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~ 273 (377)
..++|+++++.|+|| |+++|.+.........-.... ......-... .......+.++|++++++|||+
T Consensus 156 -~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~---~~~~~dl~m~-----~~~G~ert~~e~~~ll~~AGf~ 226 (244)
T d1fp2a2 156 -CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQ---IKLLMDVNMA-----CLNGKERNEEEWKKLFIEAGFQ 226 (244)
T ss_dssp -HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHH---HHHHHHHHGG-----GGTCCCEEHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHH---HHHHHHHHHH-----hCCCcCCCHHHHHHHHHHcCCc
Confidence 789999999999999 788888754432211100000 0001100000 0012345778999999999996
Q ss_pred c
Q 017080 274 Q 274 (377)
Q Consensus 274 ~ 274 (377)
+
T Consensus 227 ~ 227 (244)
T d1fp2a2 227 H 227 (244)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.23 E-value=9.8e-12 Score=109.06 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=81.0
Q ss_pred HHHHHHh-CCCCCCEEEEECCccCccccc----------CCCceEEEEeCCHHHHHHHHHc------------CCeEEEe
Q 017080 112 KVATFLN-SLPSGSLVLDAGCGNGKYLGL----------NPDCFFVGCDISPSLIKICVDR------------GHEVLVA 168 (377)
Q Consensus 112 ~~~~~l~-~~~~~~~vLDiGcG~G~~~~~----------~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~ 168 (377)
.+.+.+. .+.++.+|||||||+|.++.. .++.+|+++|+++.+++.|+++ ++.+..+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 4445443 578899999999999996421 3456999999999999988764 6889999
Q ss_pred eCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 169 d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|......+.++||.|++..++.++++ .+.+.|||||++++...
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~---------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT---------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH---------HHHHTEEEEEEEEEEES
T ss_pred ccccccccccceeeEEEEeechhchH---------HHHHhcCCCcEEEEEEe
Confidence 99887666889999999999998875 25689999999988654
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.20 E-value=3.5e-11 Score=103.24 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=73.5
Q ss_pred CCCCEEEEECCccCcc----c----c----cCCCceEEEEeCCHHHHHHHHHc---------------------------
Q 017080 121 PSGSLVLDAGCGNGKY----L----G----LNPDCFFVGCDISPSLIKICVDR--------------------------- 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~----~----~----~~~~~~v~gvD~s~~~~~~a~~~--------------------------- 161 (377)
.+..+|+++|||+|.- + . .....+++|+|+|+.+++.|+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4456999999999981 1 1 12345899999999999999853
Q ss_pred -----------CCeEEEeeCCCC-CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 162 -----------GHEVLVADAVNL-PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 162 -----------~~~~~~~d~~~~-~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.+.+...+.... +.+.+.||+|+|.+||.+++.+. ..++++++++.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~-~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-QEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-HHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHH-HHHHHHHHHHHhCCCcEEEEe
Confidence 012333333332 23457899999999999998755 689999999999999998875
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.17 E-value=6.8e-12 Score=111.79 Aligned_cols=143 Identities=14% Similarity=0.114 Sum_probs=95.2
Q ss_pred CCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
....+|||||||+|.++ +.+|+.+++++|+.+. ++.+... ++.++.+|+.+ +.|. .|+++...++|+.+++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~ 155 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDE 155 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHH
Confidence 34579999999999975 3599999999999553 3333332 68899999866 3333 4778889999999876
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+ ...+|+++++.|+|||+++|.+....................... +... ......+.++|++++++|||++
T Consensus 156 ~-~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~m-l~~~-----~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 156 H-CLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIM-LAHN-----PGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp H-HHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHH-HHHC-----SSCCCEEHHHHHHHHHHHCCSC
T ss_pred H-HHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHH-HhhC-----CCCCcCCHHHHHHHHHHcCCCc
Confidence 5 899999999999999999998765332211100000000000000 0000 0122356788999999999966
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=8.8e-11 Score=105.81 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=76.1
Q ss_pred CCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccc-
Q 017080 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV- 188 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~- 188 (377)
..+.+|||+|||+|..+ ...|..+|+++|+|+.+++.|+++ +++++.+|..+ ++++++||+|+++=.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 45679999999999864 348999999999999999999987 57889999876 455789999999622
Q ss_pred ------------hhhcCC------h---HHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 ------------LHHLST------E---SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 ------------l~h~~~------~---~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+.|-|. . +-..+++.++.++|+|||.+++..
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 122111 0 115678899999999999998863
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.14 E-value=2.4e-11 Score=105.82 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++.+|||||||+|..+.. ..+.+|+++|.++.+++.|+++ ++.++.+|........++||.|++...
T Consensus 75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a 154 (215)
T d1jg1a_ 75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG 154 (215)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecc
Confidence 578899999999999997642 3356899999999999999986 688999999886666899999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+.++++ . +...|||||++++...
T Consensus 155 ~~~ip~-----~----l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 155 APKIPE-----P----LIEQLKIGGKLIIPVG 177 (215)
T ss_dssp BSSCCH-----H----HHHTEEEEEEEEEEEC
T ss_pred cccCCH-----H----HHHhcCCCCEEEEEEc
Confidence 998875 2 4567999999988653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=3.7e-11 Score=113.91 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=69.7
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHcC----------------CeE-EEeeCCCCCCC-
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRG----------------HEV-LVADAVNLPYR- 176 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~~----------------~~~-~~~d~~~~~~~- 176 (377)
.+.++.+|||||||+|..+. ..+..+|+|||+|+.|++.|+++. ..+ ..++....+..
T Consensus 213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d 292 (406)
T d1u2za_ 213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 292 (406)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccc
Confidence 47899999999999999642 255669999999999999998751 111 22333322211
Q ss_pred --CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 177 --SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 177 --~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-..+|+|++.. +.|.++ +...|.++.++|||||+|+...
T Consensus 293 ~~~~~adVV~inn-~~f~~~---l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 293 ELIPQCDVILVNN-FLFDED---LNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHGGGCSEEEECC-TTCCHH---HHHHHHHHHTTCCTTCEEEESS
T ss_pred cccccceEEEEec-ccCchH---HHHHHHHHHHhcCCCcEEEEec
Confidence 13467888754 445555 8899999999999999988754
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.96 E-value=5.1e-10 Score=100.19 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=75.7
Q ss_pred hCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
..+.+|.+|||+|||+|.++- ....++|+++|+|+.+++.++++ .+.++.+|+..++ +.+.||.|++.
T Consensus 103 ~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~ 181 (260)
T d2frna1 103 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMG 181 (260)
T ss_dssp HHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred hhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEEC
Confidence 345789999999999999752 24456999999999999999876 3688999998875 36789999875
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.. +. ...++.++.+.|+|||++.+....
T Consensus 182 ~p----~~---~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 182 YV----VR---THEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp CC----SS---GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred CC----Cc---hHHHHHHHHhhcCCCCEEEEEecc
Confidence 32 22 346788899999999998776543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=2e-10 Score=106.05 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=76.5
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC----CCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~----~~~~~~fD~V~~~ 186 (377)
..+|.+|||++||+|.++.. ..+.+|+++|+|+.+++.++++ +++++++|+.++ +...++||+|++.
T Consensus 143 ~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 143 RFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 34688999999999997632 3456999999999999999987 467889988663 3346789999985
Q ss_pred cchhhcC------ChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AVLHHLS------TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l~h~~------~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
-.-.... .......++..+.++|||||.|++++-+.
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 3211110 01114678899999999999999887543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.92 E-value=5.7e-10 Score=103.22 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=79.7
Q ss_pred HHHHHHHhC-CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC----C
Q 017080 111 PKVATFLNS-LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL----P 174 (377)
Q Consensus 111 ~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~----~ 174 (377)
+.....+.. +.+|.+|||+|||+|.++.. ....+|+++|+|+.+++.++++ +++++++|+.+. +
T Consensus 133 r~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~ 212 (324)
T d2as0a2 133 RENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ 212 (324)
T ss_dssp HHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred hhHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHH
Confidence 333344443 57899999999999997632 3334899999999999999887 357888988652 2
Q ss_pred CCCCceeEEEeccchhhcC--C----hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 175 YRSDFGDAAISIAVLHHLS--T----ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h~~--~----~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
...++||+|++.-....-. + ......++..+.++|||||+|++++-+.
T Consensus 213 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 213 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 3467899999843221111 0 0114568889999999999999987543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.87 E-value=1.9e-09 Score=91.95 Aligned_cols=114 Identities=15% Similarity=0.258 Sum_probs=86.0
Q ss_pred cchHHHHHHHhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC---
Q 017080 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--- 174 (377)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--- 174 (377)
....++..++. +.++..+||++||+|.++ ...|++.|+|+|.++.|++.|+++ ++.++.+++.++.
T Consensus 10 Vll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 10 VMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp TTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred hHHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 34456666664 467889999999999864 336889999999999999999986 4788888887642
Q ss_pred --CCCCceeEEEeccch--hhcCCh----HHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 175 --YRSDFGDAAISIAVL--HHLSTE----SRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 175 --~~~~~fD~V~~~~~l--~h~~~~----~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+..++||.|+.-..+ .++.+. ......|..+.++|+|||.+++.++..
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 446899999875433 122221 116688999999999999999887653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.80 E-value=3e-09 Score=90.86 Aligned_cols=65 Identities=29% Similarity=0.325 Sum_probs=54.1
Q ss_pred CCCEEEEECCccCcccc--c-CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 122 SGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~-~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.|.+|||+|||+|.++. . .....|+|+|+++.+++.|+++ ++.++++|+.++ +++||+|+++=.+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l---~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI---SGKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC---CCCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhc---CCcceEEEeCccc
Confidence 58899999999998742 2 3335899999999999999998 689999999886 4789999997443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.78 E-value=1.4e-09 Score=99.07 Aligned_cols=108 Identities=12% Similarity=-0.007 Sum_probs=78.3
Q ss_pred HHHHHHhCCCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC----CC
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLP----YR 176 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~----~~ 176 (377)
.+...+....++.+|||++||+|.++. ...+++|++||.|+.+++.|+++ .++|+++|+..+- ..
T Consensus 122 ~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~ 201 (309)
T d2igta1 122 WLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR 201 (309)
T ss_dssp HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc
Confidence 344455566778999999999999753 25677999999999999999986 3678999987631 23
Q ss_pred CCceeEEEecc---------chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 SDFGDAAISIA---------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 ~~~fD~V~~~~---------~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++||+|++.= ....+. .....+++.+.++|+|||.+++.+..
T Consensus 202 ~~~fD~IilDPP~f~~~~~~~~~~~~--~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 202 GSTYDIILTDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp TCCBSEEEECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CCCCCEEEECCCcccccccchhHHHH--HHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 57899999831 111111 12456778888999999987666543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.77 E-value=3.8e-09 Score=97.06 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=78.2
Q ss_pred HHHhCCCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC----CCCCC
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL----PYRSD 178 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~----~~~~~ 178 (377)
.++..+.+|.+|||+.||+|.++- ...++ +|+++|+|+.+++.++++ +++++.+|+.+. .-..+
T Consensus 137 ~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~ 216 (317)
T d2b78a2 137 ELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHL 216 (317)
T ss_dssp HHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred HHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcC
Confidence 345667789999999999999853 23444 899999999999999987 357899998653 12356
Q ss_pred ceeEEEeccc-h----hhcCCh-HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 179 FGDAAISIAV-L----HHLSTE-SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 179 ~fD~V~~~~~-l----~h~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+||+|++.=- + ..+.+. .+..++++.+.++|+|||+|+++.-+
T Consensus 217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 8999998411 0 011110 11567999999999999999998744
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.76 E-value=4.7e-09 Score=86.09 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=74.8
Q ss_pred HHHHHhCCCCCCEEEEECCccCcccc--cCCC-ceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCce
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFG 180 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~--~~~~-~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~~~~f 180 (377)
+...+..--.|.+|||+|||+|.+.- ...+ .+|+++|.++.+++.++++ .++++++|+..+ ....++|
T Consensus 5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~f 84 (152)
T d2esra1 5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRF 84 (152)
T ss_dssp HHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCE
T ss_pred HHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccccccc
Confidence 34455544468999999999999752 2344 3999999999999998887 367888888763 3557889
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHH--HccccCcEEEEEEc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVW 220 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~--r~LkpgG~l~i~~~ 220 (377)
|+|++.-... .......+..+. +.|+|||.+++...
T Consensus 85 DiIf~DPPy~----~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 85 DLVFLDPPYA----KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp EEEEECCSSH----HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ceeEechhhc----cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 9999853221 111455666554 57999999988753
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.68 E-value=1e-08 Score=85.76 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=66.6
Q ss_pred CCCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC----CCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL----PYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~----~~~~~~fD~V~~~ 186 (377)
.+..|.+|||+|||+|.++- ...+++++++|.|+.+++.++++ +.++...+...+ .....+||+|++.
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred cccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 35678899999999999753 35678999999999999999887 234555454321 2345789999985
Q ss_pred cchhhcCChHHHHHHHHHH--HHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~--~r~LkpgG~l~i~~ 219 (377)
=..+ ... ...+.++ ..+|+|||.+++..
T Consensus 118 PPY~-~~~----~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYA-MDL----AALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTT-SCT----THHHHHHHHHTCEEEEEEEEEEE
T ss_pred cccc-cCH----HHHHHHHHHcCCcCCCeEEEEEe
Confidence 3322 222 2333333 35799999988865
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.64 E-value=1e-08 Score=88.93 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=73.0
Q ss_pred HHHHHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C----
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---- 174 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~---- 174 (377)
++..+....++.+|||||||+|..+ .. .++.+|+++|+++.+.+.|+.+ +++++.+|..+. +
T Consensus 47 lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~ 126 (214)
T d2cl5a1 47 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK 126 (214)
T ss_dssp HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHH
T ss_pred HHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhh
Confidence 3333333445579999999999843 22 4578999999999999999865 478899988762 2
Q ss_pred -CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 -YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 -~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+..++||+|+.-+.-.... ....+.+..++|||||++++-+
T Consensus 127 ~~~~~~~D~ifiD~~~~~~~----~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 127 KYDVDTLDMVFLDHWKDRYL----PDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp HSCCCCEEEEEECSCGGGHH----HHHHHHHHTTCEEEEEEEEESC
T ss_pred cccccccceeeecccccccc----cHHHHHHHhCccCCCcEEEEeC
Confidence 3457899999864222111 2345777889999999876643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.59 E-value=3.6e-08 Score=84.52 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=53.4
Q ss_pred CCCEEEEECCccCcccc--c-CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~-~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.|.+|||+|||+|.++. . .....|+|+|+|+.+++.++++ ..+++.+|+..+ .++||+|+++-....
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGS 121 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSS
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcccc
Confidence 57899999999999753 2 3335999999999999999987 456788887765 567999999766543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=5.9e-08 Score=84.15 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=78.9
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 174 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~--- 174 (377)
++...+......++|||||||+|.-+ .. ..+.+++.+|+++...+.|+++ .+++..+|+.+. +
T Consensus 49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~ 128 (219)
T d2avda1 49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL 128 (219)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence 45555555566789999999999843 22 4578999999999999999876 478888887552 1
Q ss_pred --CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 175 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 175 --~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
...++||+|+...- .+. ....+..+.+.|+|||.+++-+..
T Consensus 129 ~~~~~~~fD~ifiD~d----k~~--y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 129 AAGEAGTFDVAVVDAD----KEN--CSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp HTTCTTCEEEEEECSC----STT--HHHHHHHHHHHEEEEEEEEEECCS
T ss_pred hhcccCCccEEEEeCC----HHH--HHHHHHHHHHHhcCCcEEEEeCCc
Confidence 23678999998632 221 567889999999999999886543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=3.1e-07 Score=81.21 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=51.4
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC------CCCCCceeEE
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL------PYRSDFGDAA 183 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~------~~~~~~fD~V 183 (377)
+..+|||+|||+|... ...++++++|+|+|+.+++.|+++ .+.+...+.... ...+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 3469999999999853 346889999999999999999987 244454443331 1235689999
Q ss_pred Eeccchhh
Q 017080 184 ISIAVLHH 191 (377)
Q Consensus 184 ~~~~~l~h 191 (377)
+|+=-...
T Consensus 141 vsNPPY~~ 148 (250)
T d2h00a1 141 MCNPPFFA 148 (250)
T ss_dssp EECCCCC-
T ss_pred EecCcccc
Confidence 99876554
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.39 E-value=2e-07 Score=85.13 Aligned_cols=95 Identities=19% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC-CCCCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~-~~~~~~fD~V 183 (377)
+.+++||.||.|.|..+. ..+..+|++||+++.+++.|++. +++++.+|+... .-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 456799999999998653 34567999999999999999865 467888998763 2335789999
Q ss_pred Eeccc--------hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~--------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++-.. ..++-. ..+++.+++.|+|||++++..
T Consensus 156 i~D~~dp~~~~~~~~~L~t----~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYT----VEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSS----HHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhh----HHHHHHHHHhcCCCceEEEec
Confidence 96431 112333 579999999999999988864
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.38 E-value=2.7e-07 Score=77.62 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=73.9
Q ss_pred HHhCCCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC----CCCCCce
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDFG 180 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~----~~~~~~f 180 (377)
.+.....|.+|||++||+|.+.- ...|+ .|+++|.++.+++.++++ +++++.+|+..+ .-...+|
T Consensus 35 ~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~f 114 (182)
T d2fhpa1 35 MIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQF 114 (182)
T ss_dssp HHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred HHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCc
Confidence 34444578999999999999753 34555 799999999999999886 467888888652 1235689
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHH--ccccCcEEEEEEc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVR--VVKKGSLVLITVW 220 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r--~LkpgG~l~i~~~ 220 (377)
|+|++.=-.. ... ....+..+.. .|+|+|++++...
T Consensus 115 DlIflDPPY~-~~~---~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 115 DLVLLDPPYA-KQE---IVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp EEEEECCCGG-GCC---HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ceEEechhhh-hhH---HHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 9999854322 233 5677777764 6999999887653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.34 E-value=2.3e-07 Score=83.19 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=72.6
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCCCCCCCce
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLPYRSDFG 180 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~-----------------~~~~~~~d~~~~~~~~~~f 180 (377)
+++.+||-||+|.|..+. ..+..+|+.||+++.+++.|++. +++++.+|+..+--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 556899999999998653 24556899999999999999853 3678888886532235789
Q ss_pred eEEEeccch-----hhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 181 DAAISIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 181 D~V~~~~~l-----~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|+|++-..- .++-. ..+++.+++.|+|||++++...+
T Consensus 151 DvIi~D~~~~~~~~~~L~t----~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFS----EEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp EEEEEECCCCC-----TTS----HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccC----HHHHHhhHhhcCCCceEEEecCC
Confidence 999974322 12222 57999999999999998887543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=2.8e-07 Score=77.54 Aligned_cols=94 Identities=11% Similarity=0.095 Sum_probs=70.7
Q ss_pred CCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-CCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 190 (377)
.+.+|||++||+|.+.- ...|+ .|+.||.++.+++.++++ +..++..|+..+ .....+||+|++.=...
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 56799999999999863 34555 899999999999999886 466777777653 34567899999964432
Q ss_pred hcCChHHHHHHHHHHHH--ccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVR--VVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r--~LkpgG~l~i~~ 219 (377)
. .. ...++..+.+ .|+|+|.+++..
T Consensus 123 ~-~~---~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 123 R-GL---LEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp T-TT---HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred c-ch---HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 1 22 4566777665 699999998864
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.33 E-value=5.9e-07 Score=82.54 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=75.0
Q ss_pred CCCCCCEEEEECCccCccccc---------CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---------~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
...++.+|||.|||+|.++.. .....++|+|+++.+++.|+.+ +..+...|.... .+.++||+|
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v 192 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVV 192 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEE
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-ccccccccc
Confidence 345677999999999997521 3455899999999999998865 456677776543 346789999
Q ss_pred EeccchhhcCChHH---------------HHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIAVLHHLSTESR---------------RKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~~l~h~~~~~~---------------~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++=.+......+. ...++..+.+.|+|||++.+..+.
T Consensus 193 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 193 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 99865533322111 234799999999999999888764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=1e-06 Score=75.28 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=72.7
Q ss_pred CCCEEEEECCccCcc----cccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~----~~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
++.+|+|+|+|.|.- +-..|..+++.+|.+..-+...+.- ++.++...+++.. .+.+||+|+++.+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS-
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc-
Confidence 456999999999983 3358999999999999866555442 6788888888864 35689999998753
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ +..++.-+...+++||.+++.-
T Consensus 143 ---~---~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 ---S---LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---S---HHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---C---HHHHHHHHHHhcCCCcEEEEEC
Confidence 3 7789999999999999988875
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.28 E-value=5.5e-07 Score=80.27 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=64.7
Q ss_pred CCEEEEECCccCccc---ccCCCceEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCC-CCCCCceeEEEeccch-
Q 017080 123 GSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR----G----HEVLVADAVNL-PYRSDFGDAAISIAVL- 189 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~---~~~~~~~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~-~~~~~~fD~V~~~~~l- 189 (377)
..+|||+|||+|..+ ...|.+.|+++|+|+.+++.|+++ + +.+..+|..+. +...++||+|+++=--
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 458999999999853 247889999999999999999987 2 34566676653 2334789999996210
Q ss_pred ---hhcCC----h--------HHHHHHHHH-HHHccccCcEEEEEE
Q 017080 190 ---HHLST----E--------SRRKKAIEE-LVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ---~h~~~----~--------~~~~~~l~~-~~r~LkpgG~l~i~~ 219 (377)
..++. + ++-..++++ +.+.|+|||++++..
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 00110 0 000122222 457899999988765
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.25 E-value=2.8e-07 Score=80.15 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=77.5
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----c-cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 174 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~-~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~--- 174 (377)
+++..+......++|||||+++|.-+ . ..++++++.+|.++...+.|+++ .++++.+|+.+. +
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~ 128 (227)
T d1susa1 49 QFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI 128 (227)
T ss_dssp HHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHH
Confidence 34455544556789999999999843 2 24578999999999999999876 478888888652 2
Q ss_pred ---CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 175 ---YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 175 ---~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...++||+|+.-.-= .. ....+..+.+.|+|||.+++-..
T Consensus 129 ~~~~~~~~fD~iFiDa~k---~~---y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 129 KDEKNHGSYDFIFVDADK---DN---YLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HCGGGTTCBSEEEECSCS---TT---HHHHHHHHHHHBCTTCCEEEETT
T ss_pred hccccCCceeEEEeccch---hh---hHHHHHHHHhhcCCCcEEEEccC
Confidence 125689999996421 22 67889999999999999888643
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.24 E-value=7.9e-07 Score=80.17 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=73.8
Q ss_pred CCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
+.+.+||-||.|.|..++. .+..+|++||+++.+++.|++. +++++.+|+... .-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4567999999999987642 4456999999999999999874 468888888763 33467899999
Q ss_pred eccc------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAV------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+-.. ..++-. ..+++.+++.|+|||++++...+
T Consensus 168 ~D~~dp~~~~~~~L~t----~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFT----EEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEC----------CCS----HHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCcCchhhhcc----HHHHHHHHhhcCCCcEEEEecCC
Confidence 7532 223333 58999999999999999887544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.19 E-value=2e-06 Score=77.46 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=74.9
Q ss_pred CCCCEEEEECCccCccccc---C-CCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC--CCCCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL--PYRSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~-~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~--~~~~~~fD~V 183 (377)
+...+||=||.|.|..++. . +..+++.+|+++.+++.+++. +++++.+|+... ...+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4567999999999997642 3 446899999999999999874 467888887652 2345789999
Q ss_pred Eecc-----chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIA-----VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~-----~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+.-. .-.++-+ ..+++.+++.|+|||++++...+
T Consensus 159 i~D~~dp~~~~~~L~t----~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFE----KPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EECCCCTTSGGGGGGS----HHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCCCCcchhhCC----HHHHHHHHHhcCCCcEEEEecCC
Confidence 9733 2233433 57999999999999999988644
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.2e-06 Score=78.57 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=73.3
Q ss_pred CCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
+.+++||-||.|.|..++. .+..+++.+|+++.+++.|++. +++++.+|+... .-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4568999999999987642 3456999999999999999864 578888887663 23457899999
Q ss_pred eccc-----hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 185 SIAV-----LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 185 ~~~~-----l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+-.. ..++-. ..+++.+++.|+|||.+++.....
T Consensus 157 ~D~~~p~~~~~~L~t----~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 157 TDSSDPMGPAESLFK----ESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EECC---------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcCCCCCCccccccc----HHHHHHHHHhcCCCCeEEEeccch
Confidence 8532 122222 478999999999999998876543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=8.7e-07 Score=74.17 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=76.1
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCc
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDF 179 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~ 179 (377)
+.....-++++.+|||+||++|.|++. .....++++|+.+.- .-.++.++.+|+.+.. ...+.
T Consensus 13 I~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~----~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred HHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc----ccCCceEeecccccchhhhhhhhhccCcc
Confidence 333344568899999999999999753 566799999987621 1226788999987632 23568
Q ss_pred eeEEEeccchhh--------cCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 180 GDAAISIAVLHH--------LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 180 fD~V~~~~~l~h--------~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+|+|++-++..- ....+.....+.-+.++||+||.+++-.+...
T Consensus 89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~ 140 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc
Confidence 999999765432 22222245677788899999999999988643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.12 E-value=2.2e-06 Score=76.54 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=74.1
Q ss_pred CCCCEEEEECCccCccccc---C-CCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~-~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
+.+.+||-||.|.|..++. + +..+|+.+|+++..++.|++. +++++.+|+... .-.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4567999999999997642 3 456999999999999999875 467888888662 23467899999
Q ss_pred eccch-----hhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l-----~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.-..- .++-+ ..+++.+.+.|+|||+++....+
T Consensus 154 ~D~~~p~~~~~~L~t----~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFT----KGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp ESCSSCCSCCCCCST----THHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhcc----HHHHHHHHhhcCCCceEEEecCC
Confidence 75321 22333 58999999999999998887543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.05 E-value=1.5e-06 Score=78.73 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=70.4
Q ss_pred CCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
+.+.+||-||.|.|..++. .+..+|+.+|+++.+++.+++. +++++.+|+... ....++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4567999999999987643 3446999999999999999875 356777777652 23367899999
Q ss_pred eccchh-----hcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLH-----HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~-----h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+-..-. ++- -..+++.+++.|+|||+++....+
T Consensus 185 ~D~~dp~~~~~~L~----t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 185 TDSSDPVGPAESLF----GQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp ECCC-----------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhh----hHHHHHHHHhhcCCCcEEEEecCC
Confidence 854322 222 257899999999999999887543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.03 E-value=2.5e-06 Score=73.21 Aligned_cols=101 Identities=23% Similarity=0.333 Sum_probs=71.0
Q ss_pred hCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
....++.+|||.|||+|.++.. .....++|+|+++..+..++. ..+..+|..... ....||+|+++-.....
T Consensus 15 ~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~--~~~~~~~~~~~~-~~~~fd~ii~npP~~~~ 91 (223)
T d2ih2a1 15 AEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW--AEGILADFLLWE-PGEAFDLILGNPPYGIV 91 (223)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT--EEEEESCGGGCC-CSSCEEEEEECCCCCCB
T ss_pred cCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc--ceeeeeehhccc-cccccceecccCccccc
Confidence 3456788999999999997531 445689999999987655433 355667766544 35789999997654321
Q ss_pred CCh--------------------------HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 193 STE--------------------------SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 193 ~~~--------------------------~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
... .-...++....+.|+|||.+.+..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 92 GEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp SCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 100 00246678899999999999988764
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.00 E-value=2.2e-06 Score=74.79 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=57.4
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+.++.+|||||||+|.++.. ..+.+|+++|+++.+++..+++ ++.++.+|+..++++......|++ +.=.+
T Consensus 18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~-NLPYn 96 (235)
T d1qama_ 18 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFG-NIPYN 96 (235)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEE-ECCGG
T ss_pred CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceeee-eehhh
Confidence 356889999999999998753 3457999999999999998876 588999999998776554444544 33445
Q ss_pred cCC
Q 017080 192 LST 194 (377)
Q Consensus 192 ~~~ 194 (377)
+..
T Consensus 97 Iss 99 (235)
T d1qama_ 97 IST 99 (235)
T ss_dssp GHH
T ss_pred hhH
Confidence 554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.91 E-value=1.2e-05 Score=67.16 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=81.7
Q ss_pred chHHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCC-----CCCC
Q 017080 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLP-----YRSD 178 (377)
Q Consensus 109 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~-----~~~~ 178 (377)
...++..++. +.+|..++|..+|.|..+.. ..+.+|+|+|..+.+++.++.. ++.++..++.++. ...+
T Consensus 6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCC
Confidence 3455666664 56788999999999986542 3467999999999999999875 5778888777642 3357
Q ss_pred ceeEEEeccch--hhcCChH----HHHHHHHHHHHccccCcEEEEEEcC
Q 017080 179 FGDAAISIAVL--HHLSTES----RRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 179 ~fD~V~~~~~l--~h~~~~~----~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+|.|+.-..+ .++.+.+ .....|......|+|||.+++..+.
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 79999885432 2232211 1455788889999999999998864
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.89 E-value=1e-05 Score=70.39 Aligned_cols=91 Identities=18% Similarity=0.041 Sum_probs=70.8
Q ss_pred CCCEEEEECCccCcc----cccCCCceEEEEeCCHHHHHHHHH---c----CCeEEEeeCCCCCC---CCCceeEEEecc
Q 017080 122 SGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVD---R----GHEVLVADAVNLPY---RSDFGDAAISIA 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~----~~~~~~~~v~gvD~s~~~~~~a~~---~----~~~~~~~d~~~~~~---~~~~fD~V~~~~ 187 (377)
.+.+|+|||+|.|.- +-..|+.+++.+|.+..-+...+. . ++.++...++++.. ..++||+|+++.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 567999999999982 334899999999999976655443 2 56777777776532 246899999986
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+- . +..++.-....+++||.+++.-
T Consensus 150 va----~---l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 150 VA----R---LSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp CS----C---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred hh----C---HHHHHHHHhhhcccCCEEEEEC
Confidence 54 4 7889999999999999988874
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.87 E-value=8.1e-07 Score=78.07 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=59.8
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+.++.+|||||||+|.++.. ..+.+|+++|+++.+++.++++ +++++.+|+.+++++...++.|+++-. .|
T Consensus 26 ~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~NLP-Y~ 104 (245)
T d1yuba_ 26 NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIP-YH 104 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEECC-SS
T ss_pred CCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEeeeee-hh
Confidence 456788999999999998753 3467999999999998887665 588899999998887777776776544 56
Q ss_pred cCC
Q 017080 192 LST 194 (377)
Q Consensus 192 ~~~ 194 (377)
+..
T Consensus 105 Ist 107 (245)
T d1yuba_ 105 LST 107 (245)
T ss_dssp SCH
T ss_pred hhH
Confidence 765
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.73 E-value=5.1e-05 Score=68.74 Aligned_cols=111 Identities=12% Similarity=0.153 Sum_probs=77.0
Q ss_pred HHHHhCCCCCCEEEEECCccCc----ccc-cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCcee
Q 017080 114 ATFLNSLPSGSLVLDAGCGNGK----YLG-LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 114 ~~~l~~~~~~~~vLDiGcG~G~----~~~-~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD 181 (377)
...+....+|.+|||+.+|.|. ++. ......++++|+++.-+...+.+ ++.+...|...++..++.||
T Consensus 108 ~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 108 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred hhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Confidence 3344456789999999999997 222 25677999999999988777665 44555566666666678899
Q ss_pred EEEec------cchhhcCC------hHH-------HHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 182 AAISI------AVLHHLST------ESR-------RKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 182 ~V~~~------~~l~h~~~------~~~-------~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
.|++- +++..-++ .++ ..++|.+..+.|||||.++.++-+...
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 99882 22222111 111 357788999999999999998866543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.64 E-value=2.5e-05 Score=65.12 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=66.4
Q ss_pred CCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCC---CCCCCCceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR----G-----HEVLVADAVN---LPYRSDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~---~~~~~~~fD~V~~~ 186 (377)
.+.+|||+.||||.+.- ...|+ .|+.||.+...++..+++ + ..+...|+.. ......+||+|++-
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 56799999999999753 34555 999999999999988876 1 2334444333 22335679999985
Q ss_pred cchhhcCChHHHHHHHHHHHH--ccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVR--VVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r--~LkpgG~l~i~~~ 220 (377)
=-... .. ...++..+.. .|+++|.+++...
T Consensus 123 PPY~~-~~---~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHF-NL---AEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSS-CH---HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhh-hh---HHHHHHHHHHhCCcCCCcEEEEEec
Confidence 43321 22 4567777754 7999999988753
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.54 E-value=3.5e-05 Score=66.64 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=64.3
Q ss_pred HhCCCCCCEEEEECCccCccc----c----cCCCceEEEEeCCHHHHHHHHH--cCCeEEEeeCCCCC----CCCCceeE
Q 017080 117 LNSLPSGSLVLDAGCGNGKYL----G----LNPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP----YRSDFGDA 182 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~----~----~~~~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~----~~~~~fD~ 182 (377)
+..++ +.+|||||++.|.-+ . ..+.++++|+|+.+........ .+++++++|..+.. +....+|+
T Consensus 76 i~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dl 154 (232)
T d2bm8a1 76 LWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPL 154 (232)
T ss_dssp HHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred HHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCE
Confidence 33344 469999999999732 1 2567899999998755433222 26889999976532 33556888
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|+.-.. | .... ...-+ ++...|+|||++++.+.
T Consensus 155 IfID~~-H-~~~~--v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 155 IFIDNA-H-ANTF--NIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEESS-C-SSHH--HHHHH-HHHHTCCTTCEEEECSC
T ss_pred EEEcCC-c-chHH--HHHHH-HHhcccCcCCEEEEEcC
Confidence 877554 3 3321 12223 46689999999998763
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00032 Score=62.36 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=72.6
Q ss_pred HHhCCCCCCEEEEECCccCc----ccccCCCceEEEEeCCHHHHHHHHHc----CCe--EEEeeCCCCC--CCCCceeEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR----GHE--VLVADAVNLP--YRSDFGDAA 183 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~----~~~~~~~~~v~gvD~s~~~~~~a~~~----~~~--~~~~d~~~~~--~~~~~fD~V 183 (377)
.+....+|.+|||+.+|.|. ++.......|+++|+++.-++..+++ ++. ....+..... ...+.||.|
T Consensus 96 ~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~I 175 (284)
T d1sqga2 96 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRI 175 (284)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred cccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEE
Confidence 34456788999999999997 23345567999999999888776665 443 2222222211 235689999
Q ss_pred Ee------ccchhhcCChH-------------HHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 184 IS------IAVLHHLSTES-------------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 184 ~~------~~~l~h~~~~~-------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
++ .+++..-++.. .-.++|.++.+.|||||.|+-++-+...
T Consensus 176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 98 23333222210 0357888999999999999998866543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00027 Score=64.86 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=67.0
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C---CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P---YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~---~~~~~fD~V~~ 185 (377)
...++.+|||+-||+|.++.. ....+|+|+|.++.+++.|+.+ ++.|+.+|++.. + ....++|+|+.
T Consensus 209 ~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil 288 (358)
T d1uwva2 209 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 288 (358)
T ss_dssp TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred ccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence 355778999999999998642 4567999999999999999876 678999988763 2 23467999988
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.=-=. - ..++++.+.+. +|.-+++|+.
T Consensus 289 DPPR~-----G-~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 289 DPARA-----G-AAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp CCCTT-----C-CHHHHHHHHHH-CCSEEEEEES
T ss_pred CCCCc-----c-HHHHHHHHHHc-CCCEEEEEeC
Confidence 31100 0 12455666553 6777777774
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.0012 Score=58.84 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=69.7
Q ss_pred HHHhCCCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCc
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDF 179 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---~~~ 179 (377)
..+....+|.+|||+++|.|.= +.. .....++++|+++.-++..+++ ++.+...|...+... .+.
T Consensus 87 ~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~ 166 (293)
T d2b9ea1 87 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHE 166 (293)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTT
T ss_pred ccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccce
Confidence 3344567899999999999982 222 5677999999999988877765 466777787765422 257
Q ss_pred eeEEEecc------chhhcCC--------h---HH----HHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 180 GDAAISIA------VLHHLST--------E---SR----RKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 180 fD~V~~~~------~l~h~~~--------~---~~----~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
||.|++-. ++..-++ . .. -..++..+. .|+|||.|+-++-+...
T Consensus 167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~ 231 (293)
T d2b9ea1 167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ 231 (293)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence 99999832 2222111 0 00 123444444 47999998888765543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.16 E-value=0.0005 Score=64.71 Aligned_cols=114 Identities=14% Similarity=0.239 Sum_probs=77.7
Q ss_pred ccchHHHHHHHh---CCCCCCEEEEECCccCccccc--------CC---------CceEEEEeCCHHHHHHHHHc-----
Q 017080 107 FAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------NP---------DCFFVGCDISPSLIKICVDR----- 161 (377)
Q Consensus 107 ~~~~~~~~~~l~---~~~~~~~vLDiGcG~G~~~~~--------~~---------~~~v~gvD~s~~~~~~a~~~----- 161 (377)
+...+.+..++. ...++.+|+|-.||+|.++.. .. ...+.|+|+++.+...|+.+
T Consensus 144 f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g 223 (425)
T d2okca1 144 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG 223 (425)
T ss_dssp GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence 334444444443 345678999999999998621 11 13599999999999998865
Q ss_pred ----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC--------------hHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 162 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST--------------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 162 ----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~--------------~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
...+...|.... .+...||+|+++=.+..-.. ...-..++..+...|+|||++.+..+.
T Consensus 224 ~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 224 IGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp CCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 245666666553 34678999999765532110 011246999999999999999988764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.05 E-value=0.00033 Score=60.30 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=62.7
Q ss_pred CCCCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHH---HHHc--C-CeEEE-eeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKI---CVDR--G-HEVLV-ADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~---a~~~--~-~~~~~-~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|+|+|||.|.++.. .+...|.|+|+--..-+. .... + +.+.. .|+.. .+++..|+|+|-.
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm 140 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDI 140 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECC
T ss_pred CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeC
Confidence 457788999999999998753 344578888874221000 0000 1 12221 12222 3468899999986
Q ss_pred chhhcCC----hHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 188 VLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 188 ~l~h~~~----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+- +-++ ..+..++|.-+.+.|+|||-+++-++.+.
T Consensus 141 ~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 141 GE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp CC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred CC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 42 2222 12234677888899999999999887654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00028 Score=61.61 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=47.3
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCC
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPY 175 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~ 175 (377)
.+.++..|||||||+|.++.. ..+.+|+++|+++.+++..+.+ ++.++.+|+..+++
T Consensus 18 ~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 18 NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred CCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 356788999999999998753 4567999999999999988775 57889999988653
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.00068 Score=59.86 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=52.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++..|||||+|+|.++.. ..+.+|+++++++.+++..++. ++.++.+|+...+++. ++.|+++-
T Consensus 18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~--~~~vV~NL 94 (278)
T d1zq9a1 18 ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF--FDTCVANL 94 (278)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--CSEEEEEC
T ss_pred CCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--hhhhhcch
Confidence 456788999999999998753 3457999999999999888764 5788999998876432 45666653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.00027 Score=57.58 Aligned_cols=95 Identities=15% Similarity=-0.015 Sum_probs=65.6
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---CCCCceeEEEeccchh
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVLH 190 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~---~~~~~fD~V~~~~~l~ 190 (377)
..+++|.+||-+|+|. |.++. ...+++|+++|.|+..++.+++.+.........+.. ...+.||+|+....-.
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 3678999999999985 55432 256889999999999999999987654432222211 2245799887753322
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+- ..+....+.|+|+|++++.-
T Consensus 103 ~~-------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 103 TD-------IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp TT-------CCTTTGGGGEEEEEEEEECC
T ss_pred cc-------chHHHHHHHhhccceEEEec
Confidence 21 12445788999999998864
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.85 E-value=0.00037 Score=64.37 Aligned_cols=91 Identities=18% Similarity=0.060 Sum_probs=66.0
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc----CC------------------eEEEeeCCCCC-
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GH------------------EVLVADAVNLP- 174 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~----~~------------------~~~~~d~~~~~- 174 (377)
.+.+|||..||+|..+- ..+...|+.+|+|+..++.++++ ++ .+...|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 56799999999998642 24555999999999999999987 11 12233332211
Q ss_pred CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.....||+|..-- +-. +..+|..+.+.++.||.|.++.
T Consensus 125 ~~~~~fDvIDiDP----fGs---~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGS---PMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CCC---cHHHHHHHHHHhccCCEEEEEe
Confidence 2245799888753 334 5689999999999999999984
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.65 E-value=0.0027 Score=51.27 Aligned_cols=93 Identities=22% Similarity=0.309 Sum_probs=65.8
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeE-EEeeCCCCC----------CCCCceeEE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEV-LVADAVNLP----------YRSDFGDAA 183 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~d~~~~~----------~~~~~fD~V 183 (377)
.++++.+||-+|||. |.++. ...+++|+++|.++.-++.+++.+... +..+..... ...+.+|+|
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 578899999999986 55432 256789999999999999999986543 322222111 012457988
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+-.- .. ...+..+.+.|+|+|.+++.-.
T Consensus 103 id~~-----g~----~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 103 IDCS-----GN----EKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp EECS-----CC----HHHHHHHHHHSCTTCEEEECSC
T ss_pred eecC-----CC----hHHHHHHHHHHhcCCceEEEec
Confidence 7642 22 4678889999999999888753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.61 E-value=0.0015 Score=54.39 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=69.4
Q ss_pred hCCCCCCEEEEECCcc-Ccccc----cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~ 185 (377)
..+++|.+||-+|||. |.++. ......|+++|.++.-++.|++.+............ .....+|+++-
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 4688999999999998 54432 244559999999999999999998766543222210 12346899886
Q ss_pred ccchh------h-cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLH------H-LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~------h-~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.-... + +.... ....++.+.+.++|||.+.+.-
T Consensus 101 ~vG~~~~~~~~~~~~~~~-~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 101 AVGFEARGHGHEGAKHEA-PATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp CCCTTCBCSSTTGGGSBC-TTHHHHHHHHHEEEEEEEEECS
T ss_pred CccccccCCcccceeecC-cHHHHHHHHHHHhcCCEEEEee
Confidence 43221 1 11100 2478999999999999998874
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00066 Score=65.62 Aligned_cols=115 Identities=8% Similarity=0.122 Sum_probs=72.9
Q ss_pred ccchHHHHHHHh---CCCCCCEEEEECCccCccccc--------CC--------------CceEEEEeCCHHHHHHHHHc
Q 017080 107 FAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------NP--------------DCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 107 ~~~~~~~~~~l~---~~~~~~~vLDiGcG~G~~~~~--------~~--------------~~~v~gvD~s~~~~~~a~~~ 161 (377)
+...+.+..++. ...++.+|+|-.||+|.++.. .. ...++|+|+++.+...|+-+
T Consensus 146 fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~n 225 (524)
T d2ar0a1 146 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 225 (524)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 333344444433 345678999999999997521 11 12689999999999998865
Q ss_pred ----CC--------eEEEeeCCCCC-CCCCceeEEEeccchhhcCC-----------hHHHHHHHHHHHHccccCcEEEE
Q 017080 162 ----GH--------EVLVADAVNLP-YRSDFGDAAISIAVLHHLST-----------ESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 162 ----~~--------~~~~~d~~~~~-~~~~~fD~V~~~~~l~h~~~-----------~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
+. .+...+....+ .....||+|+++=.+.--.. ...-..++..+.+.|+|||++.+
T Consensus 226 l~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai 305 (524)
T d2ar0a1 226 CLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 305 (524)
T ss_dssp HHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence 11 22333322211 23467999999654421110 00024699999999999999999
Q ss_pred EEcC
Q 017080 218 TVWA 221 (377)
Q Consensus 218 ~~~~ 221 (377)
..+.
T Consensus 306 IlP~ 309 (524)
T d2ar0a1 306 VVPD 309 (524)
T ss_dssp EEEH
T ss_pred EEeh
Confidence 8764
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.52 E-value=0.0038 Score=56.82 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=69.8
Q ss_pred CEEEEECCccCcccc--------------------cCCCceEEEEeCCHHHHHHHHHc--------CCeE---EEeeCCC
Q 017080 124 SLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSLIKICVDR--------GHEV---LVADAVN 172 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~--------------------~~~~~~v~gvD~s~~~~~~a~~~--------~~~~---~~~d~~~ 172 (377)
-+|.|+||..|..+- -.|..+|.--|+-.+--...-+. +.-| +-+.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 579999999998430 13556888888755433222211 1112 3345555
Q ss_pred CCCCCCceeEEEeccchhhcCC------------------------------hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 173 LPYRSDFGDAAISIAVLHHLST------------------------------ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 173 ~~~~~~~fD~V~~~~~l~h~~~------------------------------~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
--||+++.|++++..++||++. ..++..+|+.=++-|+|||++++.....
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr 212 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 4588999999999999999852 1236778999999999999999987665
Q ss_pred C
Q 017080 223 E 223 (377)
Q Consensus 223 ~ 223 (377)
.
T Consensus 213 ~ 213 (359)
T d1m6ex_ 213 R 213 (359)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.0057 Score=49.38 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=67.0
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---------CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~---------~~~~~fD~V~ 184 (377)
.+.++.+||=+|+|. |.++. ...++ +|+++|.++.-++.|++.+.......-.+.+ .....+|+|+
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 578899999999988 44321 24455 8999999999999999987765544322211 0124689887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..- .. ...++...+.++|||++++.-..
T Consensus 103 d~~-----G~----~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 103 ECT-----GA----EASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp ECS-----CC----HHHHHHHHHHSCTTCEEEECSCC
T ss_pred ecc-----CC----chhHHHHHHHhcCCCEEEEEecC
Confidence 743 23 46788999999999999887543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0067 Score=49.50 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=63.9
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-----------CCCCceeE
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-----------YRSDFGDA 182 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-----------~~~~~fD~ 182 (377)
.+++|.+||-+|+|. |.++. ...++ .|+++|.++..++.+++.+..... |..+.. .....+|+
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~~~g~Dv 103 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTL-NRRETSVEERRKAIMDITHGRGADF 103 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEE-eccccchHHHHHHHHHhhCCCCceE
Confidence 467899999999985 55432 24566 899999999999999988764433 332211 11345899
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
|+-.- .. ...++...+.|+|||.+++.-
T Consensus 104 vid~v-----G~----~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 104 ILEAT-----GD----SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEECS-----SC----TTHHHHHHHHEEEEEEEEECC
T ss_pred EeecC-----Cc----hhHHHHHHHHhcCCCEEEEEe
Confidence 88542 22 246788899999999987764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.89 E-value=0.0091 Score=48.45 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=65.2
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~ 184 (377)
..+++|.+||=+|||. |.++. ...++ +|+++|.++.-++.+++.+..... |..+.+ .....+|+|+
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i-~~~~~~~~~~v~~~t~g~G~D~vi 101 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDIL-NYKNGHIEDQVMKLTNGKGVDRVI 101 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEE-CGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccc-cccchhHHHHHHHHhhccCcceEE
Confidence 4678999999999987 66432 25565 799999999999999988754432 222211 1124599887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
-.-. . ...+++..+.++|+|.+++.-.
T Consensus 102 d~~g-----~----~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 102 MAGG-----G----SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp ECSS-----C----TTHHHHHHHHEEEEEEEEECCC
T ss_pred EccC-----C----HHHHHHHHHHHhcCCEEEEEee
Confidence 6432 2 2567888899999999988643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.65 E-value=0.0092 Score=47.70 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=65.4
Q ss_pred hCCCCCCEEEEECCccCc-cc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEecc
Q 017080 118 NSLPSGSLVLDAGCGNGK-YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~-~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~~ 187 (377)
..+.++.+||=.|+|.-. .+ ....+++|+++|.++.-++.+++.+.........+.. ...+.+|+|++..
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC
Confidence 357889999999998843 32 1257779999999999999999988776654433311 1234445544321
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. ...+....+.|+|||.+++.-.
T Consensus 103 ------~----~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 103 ------S----KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ------C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred ------C----HHHHHHHHHHhccCCceEeccc
Confidence 2 3678889999999999888743
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.59 E-value=0.0091 Score=47.78 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=62.0
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~~ 186 (377)
..+++|.+||=+|+|. |.++. ...+++|+++|.++.-++.+++.+..... |..+.. ...+.+|.|++.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTV-NARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccc-cccchhHHHHHHHhhcCCccccccc
Confidence 3578899999999987 55432 24578999999999999999998765432 222211 112334454443
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. . ...+....+.|+|||++++.-
T Consensus 102 ~------~----~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 102 V------S----NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp S------C----HHHHHHHHTTEEEEEEEEECC
T ss_pred c------c----chHHHHHHHHhcCCcEEEEEE
Confidence 2 1 356788899999999988864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.031 Score=44.94 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=64.5
Q ss_pred CCCCCCEEEEECC-c-cCccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC-G-NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc-G-~G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.+|.+||-.|+ | .|..+ ....+++|++++-|++..+.+++.+...+. |..+.. ...+.+|+|+.
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi-~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVF-NHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccc-ccccccHHHHhhhhhccCCceEEee
Confidence 5678999999996 3 35543 236688999999999999999988765443 443322 22456999987
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
... ...+....+.|+|+|.++..
T Consensus 104 ~~g----------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 104 MLA----------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp SCH----------HHHHHHHHHHEEEEEEEEEC
T ss_pred ccc----------HHHHHHHHhccCCCCEEEEE
Confidence 532 24678888999999998876
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.26 E-value=0.021 Score=46.09 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCCCCCEEEEECCcc-Cccc----ccCCCceEEEEeCCHHHHHHHHHcCCe-EEEeeCCCC-----CCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHE-VLVADAVNL-----PYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~-----~~~~~~fD~V~~~~ 187 (377)
.+++|.+||=+|||. |.++ .......|+.+|.++.-++.+++.+.. ++..+-+++ .+.++.||+|+-.
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~- 103 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES- 103 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC-
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEc-
Confidence 468899999999986 3332 223344788899999999999988754 332222221 1224679988764
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... ...++...+.++|+|.+++.-
T Consensus 104 ----~G~----~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 104 ----TGS----PEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp ----SCC----HHHHHHHHHTEEEEEEEEECC
T ss_pred ----CCc----HHHHHHHHhcccCceEEEEEe
Confidence 222 467888999999999988764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.05 E-value=0.04 Score=44.13 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=68.5
Q ss_pred hHHHHHHHhCCCCCCEEEEECCcc-Cccc----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCC
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRS 177 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~-G~~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~ 177 (377)
|..+......++++.+||=+|+|. |.++ .......|+++|.++.-++.+++.+..... |..+-+ ...
T Consensus 20 ~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~ 98 (172)
T d1h2ba2 20 YRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVV-DARRDPVKQVMELTRG 98 (172)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEE-ETTSCHHHHHHHHTTT
T ss_pred HHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceee-cCcccHHHHHHHhhCC
Confidence 444444444578899999999988 4432 223445899999999999999988654332 222211 123
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..+|+|+-.. .. ...++...+.|+|||++++.-.
T Consensus 99 ~g~d~vid~~-----g~----~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 99 RGVNVAMDFV-----GS----QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp CCEEEEEESS-----CC----HHHHHHGGGGEEEEEEEEECCC
T ss_pred CCceEEEEec-----Cc----chHHHHHHHHHhCCCEEEEEeC
Confidence 4589887643 23 3578889999999999998643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.45 E-value=0.06 Score=43.34 Aligned_cols=94 Identities=15% Similarity=0.079 Sum_probs=66.2
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC-------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-NLP-------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~-------~~~~~fD~V~ 184 (377)
..+++|.+||=+|||. |.++. ...++ .|+.+|+++.-++.+++.+.......-. +.. ...+.+|+|+
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi 103 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL 103 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence 4578999999999998 66542 24454 8999999999999999987654432111 111 1235688887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 220 (377)
-.- .. ...+.+..+.++|| |.+++.-.
T Consensus 104 e~~-----G~----~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 104 DCA-----GT----AQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp ESS-----CC----HHHHHHHHHTBCTTTCEEEECCC
T ss_pred Eec-----cc----chHHHHHHHHhhcCCeEEEecCC
Confidence 642 23 46899999999996 99888643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.016 Score=46.49 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=64.8
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC---CCCCCceeEEEeccchh
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL---PYRSDFGDAAISIAVLH 190 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~---~~~~~~fD~V~~~~~l~ 190 (377)
..+++|.+||=+|+|. |.++. ...+++++++|.++.-.+.+++.+..... |..+. ....+.+|+++..-.
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i-~~~~~~~~~~~~~~~D~vid~~g-- 102 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMAAHLKSFDFILNTVA-- 102 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHHTTTTCEEEEEECCS--
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEE-ECchhhHHHHhcCCCceeeeeee--
Confidence 4678999999999987 55432 25688999999999999999888765433 22221 122357998876532
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ...+....+.|+|||.+++.-
T Consensus 103 ---~----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 103 ---A----PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ---S----CCCHHHHHTTEEEEEEEEECC
T ss_pred ---c----chhHHHHHHHHhcCCEEEEec
Confidence 1 134667788999999998864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.06 E-value=0.046 Score=43.57 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=63.7
Q ss_pred CCCCCCEEEEECC-cc-Cccc----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEe-eCCCCC------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC-GN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc-G~-G~~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-d~~~~~------~~~~~fD~V~~ 185 (377)
.+.++.+||=+|| |. |.++ .......|+++|.++.-++.+++.+...... +-.++. ...+.||+|+.
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 5788999999997 43 4432 2244469999999999999999887654332 211110 12456999887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ...++...+.++|||.+++.-
T Consensus 104 ~~g-----~----~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 104 LNN-----S----EKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp SCC-----C----HHHHTTGGGGEEEEEEEEECC
T ss_pred ccc-----c----chHHHhhhhhcccCCEEEEec
Confidence 532 2 466778899999999988774
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.99 E-value=0.5 Score=41.13 Aligned_cols=147 Identities=7% Similarity=-0.038 Sum_probs=83.0
Q ss_pred CEEEEECCccCcc-cc--cCCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCC--------CCCCceeE
Q 017080 124 SLVLDAGCGNGKY-LG--LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP--------YRSDFGDA 182 (377)
Q Consensus 124 ~~vLDiGcG~G~~-~~--~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~--------~~~~~fD~ 182 (377)
..|+.+|||-=.- .+ ..++..++-+|. |.+++.-++. +..++..|+.+-. +..+.-=+
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl 169 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 169 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence 4677799997442 22 246678999996 6665543322 2355666766421 22233457
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCC--CCCcCCCCCCCc
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPG--SPRVRSPSARTL 260 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~ 260 (377)
+++-+++.+++.++ ..++|+.+.+...||+.+++.............. ............... ..........+.
T Consensus 170 ~i~EGvl~YL~~~~-~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (297)
T d2uyoa1 170 WLAEGLLMYLPATA-QDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQM--QLRFRRVSDALGFEQAVDVQELIYHDENR 246 (297)
T ss_dssp EEECSCGGGSCHHH-HHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHH--HHHHHHHHC-----------CCTTCCTTC
T ss_pred EEEccccccCCHHH-HHHHHHHHHHhCCCCCEEEEEecccccchhHHHH--HHHHHHHHhhhccccCCChHhhccCCCch
Confidence 77788899998765 8999999999999999988865433221111000 000000000000000 001112334456
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
+...++|...||..
T Consensus 247 ~~~~~~l~~~Gw~~ 260 (297)
T d2uyoa1 247 AVVADWLNRHGWRA 260 (297)
T ss_dssp CCHHHHHTTTTEEE
T ss_pred hhHHHHHHhCCCEE
Confidence 78899999999954
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.74 E-value=0.023 Score=46.25 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------------C--CC------
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------------P--YR------ 176 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-------------~--~~------ 176 (377)
++.+||=||+|+ |..+. ...++.|+.+|.++..++..+...-+|+..+.... . +.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 356999999999 55442 37899999999999999999887555543221110 0 00
Q ss_pred ----CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEE
Q 017080 177 ----SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 177 ----~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l 215 (377)
-...|+|+....+.-=+. |.-+=+++.+.+|||..+
T Consensus 108 l~~~l~~aDlVI~talipG~~a---P~lit~~mv~~Mk~GSVI 147 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGKPA---PVLITEEMVTKMKPGSVI 147 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTSCC---CCCSCHHHHTTSCTTCEE
T ss_pred HHHHHHhhhhheeeeecCCccc---ceeehHHHHHhcCCCcEE
Confidence 124799998876665444 455677899999999754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.73 E-value=0.11 Score=40.92 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=56.1
Q ss_pred CEEEEECCcc-Cc-cccc--CCCceEEEEeCCHHHHHHHHHcCC-eEEEeeCCCCCCCCCceeEEEeccchhhcCChHHH
Q 017080 124 SLVLDAGCGN-GK-YLGL--NPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198 (377)
Q Consensus 124 ~~vLDiGcG~-G~-~~~~--~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~ 198 (377)
++|.=||+|. |. ++.. ..+.+|+++|.++..++.+++.++ .....+.+. -...|+|+..- |... .
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~----~~~~DiIilav-----p~~~-~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSL----LQTAKIIFLCT-----PIQL-I 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGG----GTTCSEEEECS-----CHHH-H
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeeccc----ccccccccccC-----cHhh-h
Confidence 4677889987 54 3322 567899999999999999888754 223223222 24569888743 3322 6
Q ss_pred HHHHHHHHHccccCcEE
Q 017080 199 KKAIEELVRVVKKGSLV 215 (377)
Q Consensus 199 ~~~l~~~~r~LkpgG~l 215 (377)
..+++++...|+++-.+
T Consensus 71 ~~vl~~l~~~l~~~~iv 87 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIV 87 (165)
T ss_dssp HHHHHHHGGGSCTTCEE
T ss_pred hhhhhhhhhhcccccce
Confidence 78999999999887654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.12 E-value=0.28 Score=39.18 Aligned_cols=92 Identities=9% Similarity=0.085 Sum_probs=59.3
Q ss_pred CCCCCCEEEEECCccCc-ccc---cCCC-ceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC-------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGK-YLG---LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~-~~~---~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~~-------~~~~~fD~V~~ 185 (377)
.+++|.+||=+|||... ++. ...+ .+|+++|++++-++.|++.+.......-+. .. ...+.+|+++-
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEE
Confidence 47889999999998744 321 2444 699999999999999999976654422211 11 12346887776
Q ss_pred ccchhhcCChHHHHHHHHHHHH-ccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVR-VVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r-~LkpgG~l~i~~ 219 (377)
.. .. ...+.+... +++++|.+++.-
T Consensus 106 ~~-----g~----~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 106 VI-----GH----LETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp CS-----CC----HHHHHHHHTTSCTTTCEEEECS
T ss_pred eC-----Cc----hHHHHHHHHHhhcCCeEEEEEE
Confidence 42 22 344444444 445668888764
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.02 E-value=0.013 Score=47.00 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=63.5
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
++.+|+=||+|. |..+. ...++.|+.+|.++..++..... ++.+...+-+.+...-...|+||....+.--+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a 110 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 110 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence 457999999998 55432 36889999999999998877665 455554443333211245799999876544443
Q ss_pred hHHHHHHHHHHHHccccCcEE
Q 017080 195 ESRRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l 215 (377)
|.-+-+++.+.+|||..+
T Consensus 111 ---P~lIt~~mv~~Mk~GSVI 128 (168)
T d1pjca1 111 ---PILVPASLVEQMRTGSVI 128 (168)
T ss_dssp ---CCCBCHHHHTTSCTTCEE
T ss_pred ---CeeecHHHHhhcCCCcEE
Confidence 455667899999998753
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=91.66 E-value=0.083 Score=45.10 Aligned_cols=86 Identities=16% Similarity=0.141 Sum_probs=55.2
Q ss_pred CEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCC-CCCCCCceeEEE
Q 017080 124 SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVN-LPYRSDFGDAAI 184 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~-~~~~~~~fD~V~ 184 (377)
.+|||.-||.|..+- ...+++|+++|-++.+....+.. +++++.+|..+ +.-..++||+|+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY 169 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence 489999999999542 24578999999999765433321 47889998766 333356799999
Q ss_pred eccchhhcCChHHHHHHHHHHHHcc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVV 209 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~L 209 (377)
.-=++.+-.......+-++-+..++
T Consensus 170 lDPMFp~~~Ksa~~kk~m~~l~~l~ 194 (250)
T d2oyra1 170 LDPMFPHKQKSALVKKEMRVFQSLV 194 (250)
T ss_dssp ECCCCCCCCC-----HHHHHHHHHS
T ss_pred ECCCCccccccccchhHHHHHHhhc
Confidence 9777765443221333444444433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.00 E-value=0.067 Score=42.78 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=61.5
Q ss_pred hCCCCCCEEEEECC-cc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---CCCCceeEEEeccch
Q 017080 118 NSLPSGSLVLDAGC-GN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVL 189 (377)
Q Consensus 118 ~~~~~~~~vLDiGc-G~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~---~~~~~fD~V~~~~~l 189 (377)
..+.+|.+||=.|. |. |.++ ....+++|++++.++...+.+++.+.+... |..+.. ...+.+|+|+-..
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~g~D~v~d~~-- 99 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVLEVR-- 99 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEEECS--
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceee-ehhhhhhhhhcccccccccccc--
Confidence 35789999999985 43 4443 235688999999999999999988765543 333321 1235699988632
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
. + .+....+.|+|||.++..
T Consensus 100 G---~------~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 100 G---K------EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp C---T------THHHHHTTEEEEEEEEEC
T ss_pred c---h------hHHHHHHHHhcCCcEEEE
Confidence 1 1 245678899999998775
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=90.96 E-value=0.15 Score=40.64 Aligned_cols=90 Identities=7% Similarity=-0.007 Sum_probs=64.2
Q ss_pred CCCCCCEEEEECCccCc--cc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC--------CCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY--------RSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~--~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~--------~~~~fD~V~~ 185 (377)
.+++|.+||=.|+|.|. ++ ....+++|++++.|+.-.+.+++.+..... |..+..+ ....+|+|+.
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi-~~~~~d~~~~v~~~t~g~g~d~v~d 103 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVI-NYREEDLVERLKEITGGKKVRVVYD 103 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEE-ECCCCCHHHHHHHHhCCCCeEEEEe
Confidence 46789999999777643 33 236778999999999999999988766443 4433221 2457898887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...- ..+......++|+|.+++..
T Consensus 104 ~~g~----------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 104 SVGR----------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp CSCG----------GGHHHHHHTEEEEEEEEECC
T ss_pred CccH----------HHHHHHHHHHhcCCeeeecc
Confidence 5432 24667888999999977653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.78 E-value=0.088 Score=46.78 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=40.9
Q ss_pred CCCEEEEECCccCccccc---C-CCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCC
Q 017080 122 SGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR----GHEVLVADAVN 172 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~---~-~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~ 172 (377)
.+..|||||.|.|.++.. . ...+|+++|+++...+..++. ++.++.+|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999998753 1 224899999999999888765 58888888764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.71 E-value=0.32 Score=38.88 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=64.7
Q ss_pred CCCCCCEEEEECCccCc--cc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~--~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~~ 186 (377)
.+++|.+||=.|++.|. .+ ....+++|++++-+++..+.+++.+.......-.... ...+.+|+|+-.
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~ 105 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 105 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEe
Confidence 56889999988886654 32 2367889999999999999999987665433222211 123568998874
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
-. ...+++..+.|+|||.+++.
T Consensus 106 vG----------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 106 VG----------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp SC----------HHHHHHHGGGEEEEEEEEEC
T ss_pred cC----------chhhhhhhhhccCCCeEEee
Confidence 32 25678899999999998875
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.47 E-value=0.54 Score=36.79 Aligned_cols=83 Identities=19% Similarity=0.138 Sum_probs=56.4
Q ss_pred EEEEECCcc-Ccc-c----ccCCCceEEEEeCCHHHHHHHHHcCCe-EEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 125 LVLDAGCGN-GKY-L----GLNPDCFFVGCDISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 125 ~vLDiGcG~-G~~-~----~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
+|+=||||. |.. + ......+|+|+|.++..++.+++.+.. ....+... ..+...|+|+..--.. .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~dlIila~p~~------~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAK--VEDFSPDFVMLSSPVR------T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGG--GGGTCCSEEEECSCHH------H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhh--hhccccccccccCCch------h
Confidence 588899998 552 2 224567999999999999999988542 22222222 2234579988764332 1
Q ss_pred HHHHHHHHHHccccCcEE
Q 017080 198 RKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l 215 (377)
...++.++...++++-.+
T Consensus 75 ~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATV 92 (171)
T ss_dssp HHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhhhccccccccc
Confidence 567889999999987544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.47 E-value=0.24 Score=39.44 Aligned_cols=89 Identities=17% Similarity=0.067 Sum_probs=63.0
Q ss_pred CCCCCCEEEEECC-c-cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGc-G-~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.+|.+||=.|+ | .|.++- ...++++++++-+++..+.+++.+..... |..+.. .....||+|+.
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~t~~~g~d~v~d 100 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVG-DSRSVDFADEILELTDGYGVDVVLN 100 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEE-ETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccc-cCCccCHHHHHHHHhCCCCEEEEEe
Confidence 5678999999874 3 255432 35678999999899989999988766543 333321 12457999998
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
... . ..++.+.+.|+|+|+++..
T Consensus 101 ~~g-----~-----~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 101 SLA-----G-----EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CCC-----T-----HHHHHHHHTEEEEEEEEEC
T ss_pred ccc-----c-----hHHHHHHHHhcCCCEEEEE
Confidence 542 2 4567788999999998875
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.01 E-value=0.37 Score=37.98 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCCCCEEEEECCccC-ccc----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC-------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNG-KYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G-~~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~~-------~~~~~fD~V~~ 185 (377)
.+++|.+||=.|||.. .++ .......|+++|.++.-.+.+++.+.......... .+ ...+.+|+|+-
T Consensus 25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid 104 (176)
T d2fzwa2 25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE 104 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeee
Confidence 5789999999999842 222 12334589999999999999999876554322221 11 11356898887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.-. . ...++.....+++||.+++..
T Consensus 105 ~~G-----~----~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 105 CIG-----N----VKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp CSC-----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred cCC-----C----HHHHHHHHHhhcCCceeEEEE
Confidence 532 2 467888999999998776553
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.92 E-value=0.6 Score=36.98 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=60.8
Q ss_pred hCCCCCCEEEEECCccCcc-c----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEe-eCCCCC-------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGNGKY-L----GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP-------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~-~----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-d~~~~~-------~~~~~fD~V~ 184 (377)
..+++|.+||=+|||...+ + .......|+++|+++.-++.+++.+...... .-.+.. ...+.+|+|+
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi 102 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV 102 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence 3578999999999997443 2 1233458999999999999999987665432 111111 1234578877
Q ss_pred eccchhhcCChHHHHHHHHHHHHccc-cCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVK-KGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lk-pgG~l~i~~~ 220 (377)
-.- .. ...+.+....++ ++|.+++.-.
T Consensus 103 d~~-----g~----~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 103 ECA-----GR----IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp ECS-----CC----HHHHHHHHHTBCTTTCEEEECCC
T ss_pred EcC-----CC----chHHHHHHHHHHHhcCceEEEEE
Confidence 642 22 355666666665 4688887653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.65 E-value=0.7 Score=34.58 Aligned_cols=85 Identities=18% Similarity=0.134 Sum_probs=59.0
Q ss_pred CEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCC----CCCCceeEEEeccchhhcCC
Q 017080 124 SLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLP----YRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~ 194 (377)
++|+=+|+|. |..+. . ..+.+|+.+|.++..++.+.+. +..++.+|+.+.. ..-...|.+++. .++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~~ 75 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TGK 75 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CCc
Confidence 4688888876 65432 1 5678999999999999888765 7899999998732 223567888874 334
Q ss_pred hHHHHHHHHHHHHccccCcE
Q 017080 195 ESRRKKAIEELVRVVKKGSL 214 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~ 214 (377)
++ ....+..+.+.+.+.-.
T Consensus 76 d~-~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 76 EE-VNLMSSLLAKSYGINKT 94 (132)
T ss_dssp HH-HHHHHHHHHHHTTCCCE
T ss_pred HH-HHHHHHHHHHHcCCceE
Confidence 32 44555666677777744
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.39 E-value=0.7 Score=36.40 Aligned_cols=92 Identities=12% Similarity=0.067 Sum_probs=61.7
Q ss_pred CCCCCCEEEEECCccCccc-----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC--CC------CCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--NL------PYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~-----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~--~~------~~~~~~fD~V~~ 185 (377)
.+++|.+||=+|+|.+..+ .......|+++|.++.-.+.+++.+......... +. ....+.+|+|+-
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid 104 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 104 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEe
Confidence 5789999999999864422 2355679999999999999999987665443222 11 022356898887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
.... ...++.....+++| |.+++..
T Consensus 105 ~~G~---------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 105 VIGR---------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp CSCC---------HHHHHHHHHHBCTTTCEEEECS
T ss_pred cCCc---------hhHHHHHHHHHhcCCcceEEec
Confidence 5432 35566677778776 5555543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=87.46 E-value=0.24 Score=42.92 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc
Q 017080 120 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
-.+|..|||.=||+|..+. ...+...+|+|+++..++.|.++
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR 291 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Confidence 3678999999999999653 46788999999999999999887
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=85.82 E-value=1 Score=35.22 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=59.3
Q ss_pred CCCCCCEEEEECCccCccc-----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeC-CCCC-------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADA-VNLP-------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~-----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-------~~~~~fD~V~~ 185 (377)
.++++.+||=+|+|.+... .......|+++|.++.-++.+++.+......-- ++.. ...+.+|+|+-
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid 104 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE 104 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeee
Confidence 5789999999999985532 235566899999999999999998765443211 1111 11345888876
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
.-. . ...+......+++||.+++
T Consensus 105 ~~G-----~----~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 105 CVG-----N----VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp CSC-----C----HHHHHHHHHTBCTTTCEEE
T ss_pred ecC-----C----HHHHHHHHHHhhCCCccee
Confidence 432 2 3556677777766644444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=83.93 E-value=0.85 Score=33.99 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=56.6
Q ss_pred EEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC----CCCceeEEEeccchhhcCChH
Q 017080 125 LVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY----RSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 125 ~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~----~~~~fD~V~~~~~l~h~~~~~ 196 (377)
+++=+|+|. |..+. . ..+..|+.+|.++..++.++..+...+.+|+.+... .-...|.+++. +++.+
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~-----~~~~~ 76 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVA-----IGANI 76 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEEC-----CCSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEE-----cCchH
Confidence 455677776 55432 1 567899999999999999988888899999877531 12356776664 33322
Q ss_pred HHHHHHHHHHHccccCcEEEEE
Q 017080 197 RRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
-...+-.+.+.+.|...++..
T Consensus 77 -~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 77 -QASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp -HHHHHHHHHHHHTTCSEEEEE
T ss_pred -HhHHHHHHHHHHcCCCcEEee
Confidence 233444444455566665554
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=81.68 E-value=0.69 Score=38.48 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=35.8
Q ss_pred CCCCEEEEECCccCccc--ccCCCceEEEEeCCHHHHHHHHHc
Q 017080 121 PSGSLVLDAGCGNGKYL--GLNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~--~~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+|..|||.=||+|..+ ....+-+.+|+|+++.-++.|+++
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 67899999999999965 346778999999999999999875
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=81.46 E-value=1.9 Score=31.81 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=60.2
Q ss_pred EEEEECCcc-Ccc-cccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCChHHH
Q 017080 125 LVLDAGCGN-GKY-LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTESRR 198 (377)
Q Consensus 125 ~vLDiGcG~-G~~-~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~~~~~ 198 (377)
+|+=+|+|. |.. ++...+..++.+|.++...+.....++.++.+|..+.. ..-...+.+++.. +++. .
T Consensus 2 HivI~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d~-~ 75 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ESDS-E 75 (129)
T ss_dssp CEEEESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SSHH-H
T ss_pred EEEEECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEec-----cchh-h
Confidence 456666665 332 23345668899999999999999889999999987632 2234567777632 3333 4
Q ss_pred HHHHHHHHHccccCcEEEEEE
Q 017080 199 KKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 199 ~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...+....+.+.|...++...
T Consensus 76 n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 76 TIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHHHHHCSSSCEEEEC
T ss_pred hHHHHHHHHHHCCCceEEEEE
Confidence 555666777888887766654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=80.77 E-value=1.2 Score=39.70 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=47.4
Q ss_pred CCCEEEEECCccCcccc-------c----CCCceEEEEeCCHHHHHHHHHc--CC-eE-EEeeCCCCCCCCCceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYLG-------L----NPDCFFVGCDISPSLIKICVDR--GH-EV-LVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~-------~----~~~~~v~gvD~s~~~~~~a~~~--~~-~~-~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+..+|+|+|+|+|.++. . .....++-+|+|+.+.+.-++. .. .+ ...+++.+| +. .-+|+++
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~~~~~~~--~~-~g~iiaN 155 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVP--EG-PAVILAN 155 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSGGGSC--CS-SEEEEEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceeccChhhcc--cC-CeEEEec
Confidence 44689999999999752 1 2345799999999988776664 11 12 233444443 22 2689999
Q ss_pred cchhhcCC
Q 017080 187 AVLHHLST 194 (377)
Q Consensus 187 ~~l~h~~~ 194 (377)
.++..+|-
T Consensus 156 E~fDAlPv 163 (365)
T d1zkda1 156 EYFDVLPI 163 (365)
T ss_dssp SSGGGSCC
T ss_pred ccCccccc
Confidence 99998885
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.68 E-value=0.3 Score=41.46 Aligned_cols=56 Identities=18% Similarity=0.059 Sum_probs=37.3
Q ss_pred EEEeeCCCC--CCCCCceeEEEeccc----hhhcC---C-hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 165 VLVADAVNL--PYRSDFGDAAISIAV----LHHLS---T-ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 165 ~~~~d~~~~--~~~~~~fD~V~~~~~----l~h~~---~-~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|+++|..+. .++++++|+|+..=- ..... + .+.....+.++.|+|||||.+++...
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 566676653 367899999998432 11100 1 11156788999999999999998753
|