Citrus Sinensis ID: 017094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKSSDI
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHcccccEEEcccccccEEEEEEcHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccccccEEEEEccccccccHHHHHHHHcccccccEEEccccccccccccccccccccEEccccccccccccHHHcccccccEEEcccccccccccccccccccccEEEEEccccccccccccccccccEEEEEEcccccHHHHHHHccccccEEEEEEEcccccccccccEEEcccccccccccHHHHcccccccEEEEEEcccccccccccccccccccEEEEEcccccEEEcccccccccccEEEcccccccHHcccccccccccccccccEEEEccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccHHcccccccEEEEcccccccccHHcHHHHccccccEEEEEcccccccccccccccccccEEEccccccHccccccccccccccEEEEcccccHHcccccccccccccEEEEcccccccccccccccccccEEEEcccHcHHcccHHHccccHccEEEcccccHccccccHccEEEEcccccHccccHHHccccccccEEEEEcccccHccccHHHcccccccEEEEcccccHcccccHccccccccEEEEcccHHHHHccccccccccccHccccEEEEcccEEccccc
Coil and Loop (DISEMBL)
mahgllqshnkkedLEDIGMRYLKELLSrsffqdltfgMVGMETFYFKMHDLMHDLALLVNsdcqsipkRVRHLSFAAANALRNDFSSLLSYLGRLRTIffstddektsqSFVESCFSKSQFLRVLNLRESALEVcprkmgnlkhmryldlsrnskikkLPKSICELqslqtldlegcleleelpkDIRYLVILRVFALTTKQKSLQesgirslgslrcltisgcRDLEHLFEEIEQLSLLRTLLIHsyddrkntrpRLRRVFIKEITQLLELPQWLLQCCTdtlhtlvigdcpnfmalpgslkdLEALETLAirgcpklsslpedmhhLTTLKLLAiggcpalserckpptgedwpkiahITQIelddeiikssdi
Flexible Loop (DISEMBL)
mahgllqshnkkedlEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEvcprkmgnlkhmrylDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTtkqkslqesgirslgslrCLTISGCRDLEHLFEEIEQLSLLRTLLihsyddrkntrprLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHitqielddeiikssdi
Low Complexity Region (SEG)
MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTldlegcleleelPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKSSDI
Disordered region (IsUnstruct)
****************DIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELD*********
Disordered Region (DISOPRED)
MAHGLLQSHNK**DLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ*************LRCLTISGCRDL*********LSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKSS**
Disordered Region (DISEMBL)
*********NKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTD*********ESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKSSDI
Disordered Region (DISPRO)
************EDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEII*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKSSDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
Q7XA42	979	Putative disease resistan	N/A	no	0.750	0.289	0.326	2e-25
Q7XA40	992	Putative disease resistan	N/A	no	0.904	0.343	0.307	9e-24
Q7XBQ9	970	Disease resistance protei	N/A	no	0.610	0.237	0.361	4e-22
Q7XA39	988	Putative disease resistan	N/A	no	0.787	0.300	0.301	1e-20
Q9LRR5	1424	Putative disease resistan	yes	no	0.557	0.147	0.35	1e-20
Q9LRR4	1054	Putative disease resistan	no	no	0.546	0.195	0.314	4e-15
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.533	0.154	0.275	4e-08
Q9SX38	857	Putative disease resistan	no	no	0.877	0.386	0.249	1e-07
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.729	0.148	0.293	2e-07
Q9SZA7	816	Probable disease resistan	no	no	0.342	0.158	0.307	7e-07

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 155/355 (43%), Gaps = 72/355 (20%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
           MAHG L S    E LED+G     EL  RSFFQ++    V     YFKMHDL+HDLA  +
Sbjct: 428 MAHGFLLSKGNLE-LEDVGNEVWNELYLRSFFQEIE---VESGKTYFKMHDLIHDLATSL 483

Query: 61  NSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKS 120
                          F+A  +  N      +Y G + +I F+    +   S+  S   K 
Sbjct: 484 ---------------FSANTSSSNIREINANYDGYMMSIGFA----EVVSSYSPSLLQKF 524

Query: 121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLE 180
             LRVLNLR S L   P  +G+L H+RYLDLS N +I+ LPK +C+LQ+LQTLDL  C  
Sbjct: 525 VSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDS 584

Query: 181 LEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGC----RDLEHLFEEIE 236
           L  LPK    L  LR   L     SL  +  R +G L CL    C    +   H   E++
Sbjct: 585 LSCLPKQTSKLGSLRNLLLDG--CSLTSTPPR-IGLLTCLKSLSCFVIGKRKGHQLGELK 641

Query: 237 QLSLLRTLLI-----------------------------------HSYDDR--KNTRPRL 259
            L+L  ++ I                                   H YD    +  +P  
Sbjct: 642 NLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEVLEALKPHS 701

Query: 260 RRVFIKEITQL--LELPQWLLQCCTDTLHTLVIGDCPNFMALP--GSLKDLEALE 310
              ++ EI     + LP W+ Q     + ++ I  C N   LP  G L  LE+LE
Sbjct: 702 NLKYL-EINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLE 755

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  111 bits (277), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 171/403 (42%), Gaps = 62/403 (15%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
           MAH  L S    E LED+G     EL  RSFFQ++    V     YFKMHDL+HDLA  +
Sbjct: 428 MAHSFLLSKGNME-LEDVGNEVWNELYLRSFFQEIE---VKSGKTYFKMHDLIHDLATSM 483

Query: 61  NSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKS 120
            S   +  + +R ++         D   +++    + +I FS    +   S+  S F + 
Sbjct: 484 FSA-SASSRSIRQINVKDDE----DMMFIVTNYKDMMSIGFS----EVVSSYSPSLFKRF 534

Query: 121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLE 180
             LRVLNL  S  E  P  +G+L H+RYLDLS N KI  LPK +C+LQ+LQTLDL  C  
Sbjct: 535 VSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGN-KICSLPKRLCKLQNLQTLDLYNCQS 593

Query: 181 LEELPKDIRYLVILRVFAL-------------------TTKQKSLQESGIRSLGSLRCLT 221
           L  LPK    L  LR   L                   T     + E     LG LR L 
Sbjct: 594 LSCLPKQTSKLCSLRNLVLDHCPLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLN 653

Query: 222 ISGCRDLEHLFE-----EIEQLSLLRTLLIHSYD---DRKN--------------TRPRL 259
           + G   + HL       E ++ +L     +HS     DR N                P L
Sbjct: 654 LRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRPNRYESEEVKVLEALKPHPNL 713

Query: 260 RRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK 319
           + + I +      LP W+       + +++I  C N   LP    +L  LE+L ++    
Sbjct: 714 KYLEIIDFCGFC-LPDWMNHSVLKNVVSILISGCENCSCLP-PFGELPCLESLELQDGSV 771

Query: 320 LSSLPEDMHHLT-----TLKLLAIGGCPALSERCKPPTGEDWP 357
                ED   LT     +L+ L IGG   L    +    E +P
Sbjct: 772 EVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFP 814

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  105 bits (263), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
           MAHG L S    E LED+G    KEL  RSFFQ++    V     YFKMHDL+HDLA  +
Sbjct: 429 MAHGFLLSKGNME-LEDVGDEVWKELYLRSFFQEIE---VKDGKTYFKMHDLIHDLATSL 484

Query: 61  NSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKS 120
            S   S    +R ++       ++ ++ ++S +G    +FF T      + F+       
Sbjct: 485 FSANTS-SSNIREIN-------KHSYTHMMS-IGFAEVVFFYT--LPPLEKFIS------ 527

Query: 121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLE 180
             LRVLNL +S     P  +G+L H+RYL+L   S ++ LPK +C+LQ+LQTLDL+ C +
Sbjct: 528 --LRVLNLGDSTFNKLPSSIGDLVHLRYLNL-YGSGMRSLPKQLCKLQNLQTLDLQYCTK 584

Query: 181 LEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISG----CRDLEHLFEEIE 236
           L  LPK+   L  LR   L   Q SL     R +GSL CL   G     R   +   E+ 
Sbjct: 585 LCCLPKETSKLGSLRNLLLDGSQ-SLTCMPPR-IGSLTCLKTLGQFVVGRKKGYQLGELG 642

Query: 237 QLSLLRTLLIHSYDDRKNTR 256
            L+L  ++ I   +  KN +
Sbjct: 643 NLNLYGSIKISHLERVKNDK 662

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 166/378 (43%), Gaps = 81/378 (21%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
           MAHG L S    E LED+G     EL  RSFFQ++          YFK+HDL+HDLA  +
Sbjct: 430 MAHGFLLSKGNLE-LEDVGNEVWNELYLRSFFQEIE---AKSGNTYFKIHDLIHDLATSL 485

Query: 61  NSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKS 120
            S   S    +R ++         D+   +S       I F+        S+  S   K 
Sbjct: 486 FSASASC-GNIREINV-------KDYKHTVS-------IGFAA----VVSSYSPSLLKKF 526

Query: 121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLE 180
             LRVLNL  S LE  P  +G+L H+RYLDLS N+  + LP+ +C+LQ+LQTLD+  C  
Sbjct: 527 VSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNN-FRSLPERLCKLQNLQTLDVHNCYS 585

Query: 181 LEELPK------DIRYLVI-----------------LRV--FALTTKQKSLQESGIRSLG 215
           L  LPK       +R+LV+                 L+   F +   +K  Q      LG
Sbjct: 586 LNCLPKQTSKLSSLRHLVVDGCPLTSTPPRIGLLTCLKTLGFFIVGSKKGYQ------LG 639

Query: 216 SLRCLTISGCRDLEHLFEEIE-------QLSLLRTL--LIHSYDDRKNTRPRLRRVFIKE 266
            L+ L + G   + HL E ++        LS    L  L  S+D+    R   + V + E
Sbjct: 640 ELKNLNLCGSISITHL-ERVKNDTDAEANLSAKANLQSLSMSWDNDGPNRYESKEVKVLE 698

Query: 267 I------TQLLEL--------PQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETL 312
                   + LE+        P W+     + + ++ I  C N + LP    +L  LE L
Sbjct: 699 ALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLP-PFGELPCLENL 757

Query: 313 AIR-GCPKLSSLPEDMHH 329
            ++ G  ++  + ED  H
Sbjct: 758 ELQNGSAEVEYVEEDDVH 775

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 118/240 (49%), Gaps = 30/240 (12%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
           MA  LL        LEDIG  YL +L+++SFFQ L   M       F MHDLM+DLA  V
Sbjct: 444 MAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTS-----FVMHDLMNDLAKAV 498

Query: 61  NSD---------CQSIPKRVRHLSFA-----AANALRNDFSSLLSYLGRLRTIF-----F 101
           + D            IP   RH SF+     A+ A R+   +       LRTI       
Sbjct: 499 SGDFCFRLEDDNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEF-----LRTILPFNSPT 553

Query: 102 STDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP 161
           S +  + ++  +    +    LR+L+L    +   P+ +  LK +RYLDLS ++KIK+LP
Sbjct: 554 SLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLS-STKIKELP 612

Query: 162 KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLT 221
           + +C L +LQTL L  C +L  LPK I  L+ LR+  L          GI+ L SL+ L+
Sbjct: 613 EFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVEMPPGIKKLRSLQKLS 672

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 36/242 (14%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
           MA G LQ     ++LE++G  Y  EL SRS  Q         +T Y  MHD +++LA   
Sbjct: 452 MAEGFLQQTRSSKNLEELGNEYFSELESRSLLQK-------TKTRYI-MHDFINELAQFA 503

Query: 61  NSDCQS---------IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFS--------T 103
           + +  S         + +R R+LS+     LR++++  + +   LR + F         T
Sbjct: 504 SGEFSSKFEDGCKLQVSERTRYLSY-----LRDNYAEPMEFEA-LREVKFLRTFLPLSLT 557

Query: 104 DDEKT---SQSFVESCFSKSQFLRVLNLRESAL-EVCPRKMGNLKHMRYLDLSRNSKIKK 159
           +  ++    Q   E        LRVL+L    +  + P    N+ H R+LDLSR ++++K
Sbjct: 558 NSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSR-TELEK 616

Query: 160 LPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRC 219
           LPKS+C + +LQTL L  C  L+ELP DI  L+ LR   L   +          L SL+ 
Sbjct: 617 LPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTKLRQMPRRFGRLKSLQT 676

Query: 220 LT 221
           LT
Sbjct: 677 LT 678

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 17/218 (7%)

Query: 132  ALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYL 191
            +L   P  +GNL  +  L++   + ++ LP  +  L SL+TLDL GC  L   P     L
Sbjct: 808  SLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFP-----L 861

Query: 192  VILRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY 249
            +   +  L  +  +++E  S I +L  L  L +  C  LE L  ++  LS L TL +   
Sbjct: 862  ISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSGC 920

Query: 250  DDRKN---TRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL 306
               ++       ++ +++ E T + E+P   L   T+ L  L + +C + + LP ++ +L
Sbjct: 921  SSLRSFPLISESIKWLYL-ENTAIEEIPD--LSKATN-LKNLKLNNCKSLVTLPTTIGNL 976

Query: 307  EALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL 344
            + L +  ++ C  L  LP D+ +L++L +L + GC +L
Sbjct: 977  QKLVSFEMKECTGLEVLPIDV-NLSSLMILDLSGCSSL 1013

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 162/397 (40%), Gaps = 66/397 (16%)

Query: 15  LEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSIPKRVRHL 74
           +ED+G  YL+EL+ RS        +V  E    +MHDLM ++ L          ++ +  
Sbjct: 468 VEDVGQDYLEELVKRSMVMVGRRDIVTSEVMTCRMHDLMREVCL----------QKAKQE 517

Query: 75  SFAAANALRND-----FSSLLSYLGRLRTI-FFSTDDEKTSQSFVESCFSKSQFLRVLNL 128
           SF      R+      F SL +   R  ++      +E   +S  +  F K + LRVL+L
Sbjct: 518 SFVQVIDSRDQDEAEAFISLSTNTSRRISVQLHGGAEEHHIKSLSQVSFRKMKLLRVLDL 577

Query: 129 RESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL--EGCLELEEL 184
             + +E    P  +G+L H+R L + R + +K+L  SI  L+ + TLDL  +G L +   
Sbjct: 578 EGAQIEGGKLPDDVGDLIHLRNLSV-RLTNVKELTSSIGNLKLMITLDLFVKGQLYIPNQ 636

Query: 185 ----------PKDIRYLVILRVFALTTKQKSLQESGIRSLGS----LRCLTIS-GCRDLE 229
                     P+D+  +  LR  ++    ++     + SL      LR LTI+  C  + 
Sbjct: 637 LWDFPVGKCNPRDLLAMTSLRRLSINLSSQNTDFVVVSSLSKVLKRLRGLTINVPCEPML 696

Query: 230 HLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLV 289
              +  + +S    L       +    P   + F  ++  L      L QC       +V
Sbjct: 697 PPVDVTQLVSAFTNLCELELFLKLEKLPG-EQSFSSDLGALR-----LWQCGLVDDPFMV 750

Query: 290 IGDCPNFMAL---PGSL--------KDLEALE-------------TLAIRGCPKLSSLPE 325
           +   PN   L    GS         K+LE LE             T+ ++ C KL S+PE
Sbjct: 751 LEKLPNLKILQLFEGSFVGSKLCCSKNLENLEEWTVEDGAMMRLVTVELKCCNKLKSVPE 810

Query: 326 DMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHI 362
               L  L+ + IG      +      GED+ K+ H+
Sbjct: 811 GTRFLKNLQEVEIGNRTKAFKDKLISGGEDFYKVQHV 847

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 131/307 (42%), Gaps = 32/307 (10%)

Query: 46  YFKMHDLMHDLALLVNSDCQSIPKRVRHLSFAAANALRNDFSSL---LSYLGRLRTIFFS 102
           +F++H L   L L  N   +  P      +    +  RND   +   + +L  L+   FS
Sbjct: 56  FFRLHRL-RKLGLSDNEIGRLPPDIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVADFS 114

Query: 103 TDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK 162
           ++        + S FS+ + L VL L + +L   P   G+L  +  L+L R + +K LP+
Sbjct: 115 SNPIPK----LPSGFSQLKNLTVLGLNDMSLTTLPADFGSLTQLESLEL-RENLLKHLPE 169

Query: 163 SICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTI 222
           +I +L  L+ LDL G  E+E+LP  + YL  L    L   Q       +  L  L  L +
Sbjct: 170 TISQLTKLKRLDL-GDNEIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYLDV 228

Query: 223 SGCRDLEHLFEEIEQLSLLRTL-----LIHSYDDRKNTRPRLRRVFIKEITQLLELPQWL 277
           S  R LE L  EI  L  L  L     L+ +  D      RL          +L+L Q  
Sbjct: 229 SENR-LEELPNEISGLVSLTDLDLAQNLLEALPDGIAKLSRL---------TILKLDQNR 278

Query: 278 LQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLA 337
           LQ   DTL     G+C N   L  +   L  L   +I    KL++L  D + L  L  L 
Sbjct: 279 LQRLNDTL-----GNCENMQELILTENFLSELPA-SIGQMTKLNNLNVDRNALEYLP-LE 331

Query: 338 IGGCPAL 344
           IG C  L
Sbjct: 332 IGQCANL 338

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 232 FEEIEQLSLLRTLLIHSYD----DRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT 287
            + + ++SL+   +  S+D    D  +  P+L  + I     L+ LP  +  C   +L  
Sbjct: 627 LKNLHKMSLILCKINKSFDQTGLDVADIFPKLGDLTIDHCDDLVALPSSI--CGLTSLSC 684

Query: 288 LVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSER 347
           L I +CP    LP +L  L+ALE L +  CP+L +LP ++  L  LK L I  C +LS  
Sbjct: 685 LSITNCPRLGELPKNLSKLQALEILRLYACPELKTLPGEICELPGLKYLDISQCVSLS-- 742

Query: 348 CKPPTGEDWPKIAHITQIEL 367
           C P   E+  K+  + +I++
Sbjct: 743 CLP---EEIGKLKKLEKIDM 759

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
147777286	815	hypothetical protein VITISV_009157 [Viti	0.973	0.450	0.445	2e-75
255577491	860	leucine-rich repeat containing protein,	0.949	0.416	0.413	4e-73
225441815	874	PREDICTED: putative disease resistance p	0.965	0.416	0.389	8e-70
356570458	857	PREDICTED: disease resistance protein RG	0.946	0.416	0.395	1e-67
356571981	754	PREDICTED: disease resistance protein RG	0.944	0.472	0.406	3e-66
356570433	856	PREDICTED: disease resistance protein RG	0.944	0.415	0.394	6e-65
224120592	836	nbs-lrr resistance protein [Populus tric	0.923	0.416	0.384	8e-65
356506536	831	PREDICTED: disease resistance protein RG	0.944	0.428	0.406	1e-64
356570440	861	PREDICTED: disease resistance protein RG	0.941	0.412	0.393	9e-64
225456041	853	PREDICTED: disease resistance protein RG	0.931	0.411	0.381	1e-63

>gi|147777286|emb|CAN69089.1| hypothetical protein VITISV_009157 [Vitis vinifera]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/404 (44%), Positives = 243/404 (60%), Gaps = 37/404 (9%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
           +AHGL+Q  ++ +DLEDIG  Y+ EL S SFFQD+          YFKMHDL+HDLA  V
Sbjct: 413 LAHGLIQPSSQNQDLEDIGNEYITELCSISFFQDVQDCKF---CVYFKMHDLVHDLAKSV 469

Query: 61  NSDCQ----SIPK----RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSF 112
               Q    +I K     V+H+  +  +    +  +LL  + +LRTI F  +   TS SF
Sbjct: 470 AQFEQHTLDAIEKINSNEVQHVLLSGDDP--EEVLTLLQKITKLRTILFR-NGGATSLSF 526

Query: 113 VESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQT 172
           V +C SK +++R L+L +S+ EV P  +GN+KH+RYL L RN +IKKLP SIC+L  LQT
Sbjct: 527 VTTCASKFKYMRYLDLSDSSFEVLPSSIGNMKHLRYLSLLRNKRIKKLPASICKLYHLQT 586

Query: 173 LDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQ--ESGIRSLGSLRCLTISGCRDLEH 230
           L L  C ELEELP+D+  L+ L   ++TTKQ++L   E+G+  L SLR L I  C +LE 
Sbjct: 587 LILAECSELEELPRDMGNLINLMFLSITTKQRALSGTENGLXCLISLRSLLIYACNNLEF 646

Query: 231 LFEEIEQLSLLRTLLI------HSYDDRKN--------------TRPRLRRVFIKEITQL 270
           +FE ++ L+ LRTL+I       S  ++ N              +  RL    I  + QL
Sbjct: 647 IFEGMQNLTALRTLVIVGCPSLVSLANKLNLXDGDGDSEDDIQGSSSRLCTFIIGALPQL 706

Query: 271 LELPQWLLQCCTDT-LHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHH 329
             LPQWL Q  T + LH L I  C NF  LP SL++L +L+ L I  CP+LS+L E MH 
Sbjct: 707 EALPQWLXQGPTXSNLHCLGINGCHNFKGLPESLENLTSLQELRIGDCPQLSTLXEGMHR 766

Query: 330 LTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK 373
           LTTLK+L+I  CP LS+RC P  GEDW +IAH+ +I +D E IK
Sbjct: 767 LTTLKVLSIDDCPELSKRCMPKIGEDWHRIAHVPEINIDGESIK 810

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577491|ref|XP_002529624.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223530909|gb|EEF32769.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 172/416 (41%), Positives = 236/416 (56%), Gaps = 58/416 (13%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDL---TFGMVGMETFYFKMHDLMHDLA 57
           MAHGLLQS ++ +  E +G++YLKEL SR FFQD+   +F       F FKMHDL+HDLA
Sbjct: 451 MAHGLLQSPDQVQLPEYLGLKYLKELFSRCFFQDIEDCSF------YFVFKMHDLVHDLA 504

Query: 58  LLVNSDCQSIPK--------RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTS 109
             V      IPK        RVRHL+F     L  D   L   L  ++TI  +      S
Sbjct: 505 QSVAQRESLIPKSGRHYSCKRVRHLTFFDPEVLSKDPRKLFHDLDHVQTILIAG----VS 560

Query: 110 QSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS 169
           +S  + C S  Q LRVL+L  S  EV PR +G LKH+RYLDL+ N KI++LP SIC LQS
Sbjct: 561 KSLAQVCISGFQNLRVLDLAWSTFEVLPRSIGTLKHLRYLDLTNNVKIRRLPSSICNLQS 620

Query: 170 LQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE 229
           LQTL L GC ELE LP++++ ++ L    +T K + L  + I  L SLR L I GC +LE
Sbjct: 621 LQTLILSGCEELEGLPRNMKCMISLSFLWITAKLRFLPSNRIGCLQSLRTLGIGGCGNLE 680

Query: 230 HLFEEIEQLSL--LRTLLI-----------------------------------HSYDDR 252
           HLF+++  L+L  LRTL++                                    +  D 
Sbjct: 681 HLFDDMIGLNLIALRTLVVGGCRNLIYLPHDIKYLTALENLTIATCENLDLLIDGNVVDN 740

Query: 253 KNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETL 312
           ++   +L+ + + E+  L+ LP+WLLQ    +L ++ I  C N + LP  L+D  +L+ L
Sbjct: 741 EHCGFKLKTLSLHELPLLVALPRWLLQWSACSLESIAIWRCHNLVMLPEWLQDFISLQKL 800

Query: 313 AIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELD 368
            I GCP LSSLP  +H LT+L+ L +  CPAL+E C P TG+DWP+IAH+++I LD
Sbjct: 801 DILGCPGLSSLPIGLHRLTSLRKLTVEDCPALAESCNPETGKDWPQIAHVSEIYLD 856

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441815|ref|XP_002277987.1| PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera]

 Score =  270 bits (690), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 163/418 (38%), Positives = 237/418 (56%), Gaps = 54/418 (12%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
           MA GL+Q  +  ++LEDIG + + EL SRSFFQD+    V   + +FKMHDL+HDLAL +
Sbjct: 465 MARGLIQPSSHNQELEDIGNQCIIELCSRSFFQDVEDYKV---SVFFKMHDLVHDLALSI 521

Query: 61  NSDCQSIPKRVRHLSFAAANALRNDFSSLLSYL---GRLRTIFFSTDDEKTSQSFVESCF 117
                   K++       A+   N    +L+ L     +RTI+F   +   +  +V +C 
Sbjct: 522 --------KKIESKEVEDASITDNVPEQILALLQEKNNIRTIWFPYSEINATAEYVGTCS 573

Query: 118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEG 177
           S+ +++RVL+LR +  E  P  +GN+KH+RYLD+  N ++KKLP SIC+L  L TL  + 
Sbjct: 574 SRFKYMRVLDLRGTDFEELPSSIGNMKHLRYLDICGNKRVKKLPASICKLYLLLTLSFKE 633

Query: 178 CLELEELPKDIRYLVILRVFALTTKQKSL--QESGIRSLGSLRCLTISGCRDLEHLFEEI 235
           C ELEELP+D+   + LR  A+TTKQ++   + +G+  L SLR L I+ C  +E +FE +
Sbjct: 634 CTELEELPRDMGNFISLRFLAITTKQRAWPRKGNGLACLISLRWLLIAECNHVEFMFEGL 693

Query: 236 EQLSLLRTLLIH-------------------------------------SYDDRKNTRPR 258
           + L+ LR+L I                                        +D +    R
Sbjct: 694 QNLTALRSLEIRRCPSLVSLPPSVKHLPALETLMIFNCEMFNFMDEDGDEENDIQGISCR 753

Query: 259 LRRVFIKEITQLLELPQWLLQ-CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGC 317
           LR + + ++ +L  LP WL+Q     TLH L+I  C  F ALP SL++L +L+ L I  C
Sbjct: 754 LRSLMVVDLPKLEALPGWLIQGLAASTLHYLLIRRCHKFKALPESLENLTSLQELRIDDC 813

Query: 318 PKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKSS 375
           P+LS+L   MH LTTLK+L+I  CP LS+RCKP  GEDW KIAH+ +I +D E IKS+
Sbjct: 814 PQLSTLSGGMHRLTTLKVLSIRDCPELSKRCKPEIGEDWHKIAHVPEIYIDGEAIKST 871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570458|ref|XP_003553404.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/407 (39%), Positives = 223/407 (54%), Gaps = 50/407 (12%)

Query: 2   AHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLAL--- 58
           A G+L    K E  ED+  +YL ELLSRSF QD    + G   + FK+HDL+HDLAL   
Sbjct: 444 ALGVLAPPRKNETPEDVVKQYLDELLSRSFLQDF---IDGGTIYQFKIHDLVHDLALFVA 500

Query: 59  -----LVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTS-QSF 112
                LVNS  Q+IP+ +RHLSFA  ++L N F+S       +R+I      E  + ++ 
Sbjct: 501 KDECLLVNSHVQNIPENIRHLSFAEFSSLGNSFTS---KSVAVRSIMIPNGAEGANVEAL 557

Query: 113 VESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQT 172
           + +C SK + LRVL+LR+S  +  PR +G LKH+R   +  N  IK+LP SIC+LQ+LQ 
Sbjct: 558 LNTCVSKFKLLRVLDLRDSTCKTLPRSIGKLKHLRSFSIQNNPNIKRLPNSICKLQNLQF 617

Query: 173 LDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF 232
           L +  C ELE LPK  R L+ LR   +TTKQ  L  + I +L SL  L+I  C ++E +F
Sbjct: 618 LSVLRCKELEALPKGFRKLICLRHLGITTKQPVLPYTEITNLISLELLSIESCHNMESIF 677

Query: 233 EEIE--QLSLLRTLLIHS--------------------------------YDDRKNTRPR 258
             ++   L  L     HS                                + + +N + R
Sbjct: 678 GGVKFPALKALNVAACHSLKSLPLDVINFPELETLTVKDCVNLDLDLWKEHHEEQNPKLR 737

Query: 259 LRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP 318
           L+ V    + QL+ LPQW LQ   ++L TL+I DC N   LP  L  +  L+ L I GCP
Sbjct: 738 LKYVAFWGLPQLVALPQW-LQETANSLRTLIISDCDNLEMLPEWLSTMTNLKVLLIYGCP 796

Query: 319 KLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQI 365
           KL SLP+++HHLT L+ L I GCP L ++C+P  GE W KI+HI  +
Sbjct: 797 KLISLPDNIHHLTALEHLHISGCPELCKKCQPHVGEFWSKISHIKDV 843

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571981|ref|XP_003554149.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/408 (40%), Positives = 229/408 (56%), Gaps = 52/408 (12%)

Query: 2   AHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFY-FKMHDLMHDLA--- 57
           A GLL S  K E LE++  +YL ELLSRSF QD   G     TFY FK+HDL+HDLA   
Sbjct: 341 ALGLLASPRKNETLENVVKQYLDELLSRSFLQDFFDG----GTFYEFKIHDLVHDLAVFV 396

Query: 58  -----LLVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTS-QS 111
                LLV S  Q+IP+ +RHLSFA  N L N F+S       +RTI F    E  S ++
Sbjct: 397 AKEECLLVKSHIQNIPENIRHLSFAEYNFLGNSFTS---KSVAVRTIMFRNGAEGGSVEA 453

Query: 112 FVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171
            + +C SK + LRVL+LR+S  +  PR +G LKH+RY  +  N  IK+LP SIC+LQ+LQ
Sbjct: 454 LLNTCVSKFKLLRVLDLRDSKCKTLPRSIGKLKHLRYFSIENNRNIKRLPNSICKLQNLQ 513

Query: 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHL 231
            L++ GC ELE LPK +R L+ LR+  +TTKQ  L  S I +L SL  L+I    ++E +
Sbjct: 514 LLNVSGCEELEALPKGLRKLISLRLLEITTKQPVLPYSEITNLISLAHLSIESSHNMESI 573

Query: 232 FEEIEQLSL-----------------------LRTLLIHS---------YDDRKNTRP-- 257
           F  ++  +L                       L TL++H           D  +   P  
Sbjct: 574 FGGVKFPALKTLYVADCHSLKSLPLDVTNFPELETLIVHDCVNLDLDLWKDHHEEQSPML 633

Query: 258 RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGC 317
           +L+ V +  + QL+ LPQW LQ   ++L +L I +C N   LP  L  +  L++L I  C
Sbjct: 634 KLKCVGLGGLPQLVALPQW-LQETANSLQSLGIINCDNLEMLPEWLSTMTNLKSLVISDC 692

Query: 318 PKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQI 365
           P+L SLP+++HHLT L+ L I  CP L  + +P  GE W KI+HI ++
Sbjct: 693 PELISLPDNIHHLTALERLRIAYCPELCRKYQPHVGEFWSKISHIKEV 740

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570433|ref|XP_003553392.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 161/408 (39%), Positives = 224/408 (54%), Gaps = 52/408 (12%)

Query: 2   AHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETF-YFKMHDLMHDLALLV 60
           A GLL S  K E LE++  +YL ELLSRSF QD     +   T   FK+HDL+HDLAL V
Sbjct: 443 ALGLLASPRKNETLENVVKQYLDELLSRSFLQDF----IDTGTMCQFKIHDLVHDLALFV 498

Query: 61  NSD--------CQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTS-QS 111
             D         Q+IP+ +RHLSFA  N + N F+S       +RTI F    E  + ++
Sbjct: 499 AKDECLLIKSHIQNIPEIIRHLSFAEYNFIGNSFTS---KSVAVRTIMFPNGAEGANVEA 555

Query: 112 FVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171
            + +C SK + LRVL+LR+S     PR +G LKH+RY  +  N  IK+LP SIC+LQ+LQ
Sbjct: 556 LLNTCVSKFKLLRVLDLRDSTCNTLPRSIGKLKHLRYFSIENNRNIKRLPNSICKLQNLQ 615

Query: 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHL 231
            L++ GC ELE LPK +R L+ LR+  +TTKQ  L  S I +L SL  L IS   ++E +
Sbjct: 616 LLNVSGCEELEALPKGLRKLISLRLLEITTKQPVLPYSEITNLISLAHLCISSSHNMESI 675

Query: 232 FEEIEQLSL-----------------------LRTLLIH-----------SYDDRKNTRP 257
           F  ++  +L                       L TL++             + + +N + 
Sbjct: 676 FGGVKFPALKTLYVVDCHSLKSLPLDVTNFPELETLVVQDCVNLDLDLWKEHHEEQNPKL 735

Query: 258 RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGC 317
           RL+ V    + QL+ LPQW LQ   ++L +L I +C N   LP  L  L  L+ L I  C
Sbjct: 736 RLKFVAFVGLPQLVALPQW-LQETANSLQSLAIKNCDNLEMLPEWLSTLTNLKVLHILAC 794

Query: 318 PKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQI 365
           P+L SLP+++HHLT L+ L I  CP L  + +P  GE W KI+HI ++
Sbjct: 795 PELISLPDNIHHLTALERLRIAYCPELRRKYQPHVGEFWSKISHIKEV 842

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120592|ref|XP_002318368.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859041|gb|EEE96588.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 229/414 (55%), Gaps = 66/414 (15%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLAL-- 58
           MAHGLLQS + + +LEDIG  YLKEL    F QD    + G  +  F M D+MHDLAL  
Sbjct: 450 MAHGLLQSSDGESELEDIGSIYLKELEYGCFLQDFR-DLYG--SLQFGMLDVMHDLALSV 506

Query: 59  ------LVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTD-DEKTSQS 111
                 +V ++ + I K V+H+S    +++R DF  L   L ++RT+F  +D D   S S
Sbjct: 507 AQDECFVVTANSKRIEKSVQHISIPDPDSVRQDFPMLSKELDQVRTVFIHSDKDVLASNS 566

Query: 112 FVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171
            +E+C S+ ++LR LNL  S  +  P+K+G LKH+RYLDLS N +IK+LP SIC+LQ+LQ
Sbjct: 567 ILETCLSRFKYLRALNLSRSQFKELPKKIGKLKHLRYLDLSWNHRIKRLPNSICKLQNLQ 626

Query: 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHL 231
           TL L GC E+EELP+ +RY+  LR   L T+Q SL    I  L SLR L I+ C +LE L
Sbjct: 627 TLFLGGCDEIEELPRGMRYMESLRFLWLATRQTSLPRDEIGCLKSLRFLWIATCENLERL 686

Query: 232 FEEIEQLSLLRTLLIHS-----------------------------YDDRKNTRPRLRRV 262
           FE++E LS LR+L I +                             + +++    +L+++
Sbjct: 687 FEDMENLSALRSLYIVTCPSLNSLPPSIKYLTSLQDLHISGCVALNFPNQEACEFKLKKL 746

Query: 263 FIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSS 322
            +  +  + ELP+WL++   DTL  L +  CP  + LP  LK   AL+ L I GCP+   
Sbjct: 747 VLCFLEAVEELPEWLIRGSADTLKNLKLEFCPALLELPACLKTFSALQELRILGCPR--- 803

Query: 323 LPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDD-EIIKSS 375
                                L+ERC   TG+DW KIA I ++ +D+ ++IK +
Sbjct: 804 ---------------------LAERCDRETGDDWEKIARIPKVIVDNVDVIKQT 836

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506536|ref|XP_003522036.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/384 (40%), Positives = 222/384 (57%), Gaps = 28/384 (7%)

Query: 2   AHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV- 60
           A G+L    K E  ED+  +YL ELLSRSF QD   G    +   FK+HDL+HDLAL V 
Sbjct: 442 ALGVLAPPRKNETPEDVVKQYLDELLSRSFLQDFIDGGTICQ---FKIHDLVHDLALFVA 498

Query: 61  -------NSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTS-QSF 112
                  NS  Q+IP+ + HLSFA  N L N F+S       +RTI FS   E  + ++ 
Sbjct: 499 EDECLLLNSHIQNIPENIWHLSFAEYNFLENSFTS---KSVAVRTIMFSNGAEVANVEAL 555

Query: 113 VESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQT 172
           + +C SK +FLRVL+LR+S  +  PR +G LKH+RY  +  N  IK+LP SIC+LQ+LQ 
Sbjct: 556 LNTCVSKFKFLRVLDLRDSTCKTLPRSIGKLKHLRYFSIQNNRNIKRLPNSICKLQNLQL 615

Query: 173 LDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF 232
           L++ GC ELE LPK +R L+ LR   +TTKQ     S ++   +L+ L ++ C  L+ L 
Sbjct: 616 LNVLGCEELEALPKGLRKLISLRHLDITTKQTVFPYSPLK-FPALKTLYVADCHSLKSLP 674

Query: 233 EEIEQLSLLRTLLI-----------HSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCC 281
            E+     L TL++             + + +N + +L+ V +  + Q + LPQW LQ  
Sbjct: 675 LEVTNFPELETLIVKDCVNLDLDLWKDHHEEQNPKLKLKLVGLWRLPQPVALPQW-LQET 733

Query: 282 TDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGC 341
            ++L +L + +C N   LP  L  +  L+ L I  CPKL SLP+++HHLT L+ L I  C
Sbjct: 734 ANSLQSLFMMNCDNLGMLPEWLSTMTNLKVLIISDCPKLISLPDNIHHLTALEYLQISDC 793

Query: 342 PALSERCKPPTGEDWPKIAHITQI 365
           P L ++C+P  GE WPKI+HI  +
Sbjct: 794 PELCKKCQPHVGEFWPKISHIKHV 817

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570440|ref|XP_003553395.1| PREDICTED: disease resistance protein RGA2-like [Glycine max]

 Score =  250 bits (638), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 163/414 (39%), Positives = 226/414 (54%), Gaps = 59/414 (14%)

Query: 2   AHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFY-FKMHDLMHDLAL-- 58
           A G+L S  K E  ED+  +YL ELLSRSF QD   G     TFY FK+HDL+HDLAL  
Sbjct: 443 ALGVLASPRKNETPEDVVKQYLVELLSRSFLQDFIDG----GTFYQFKIHDLVHDLALFV 498

Query: 59  ------LVNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTS-QS 111
                 L+NS  Q+IP+ + HLSFA  N + N F+S       +RTI F    E  + ++
Sbjct: 499 TKEECLLINSHIQNIPENIWHLSFAEYNFIGNSFTS---KSVAVRTIMFPNGAEGANVEA 555

Query: 112 FVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ 171
            + +C SK + LRVL+L +S  +   R +G LKH+RY  +  N  IK+LP SIC++Q+LQ
Sbjct: 556 LLNTCVSKFKLLRVLDLSDSTCKTLSRSIGKLKHLRYFSIQNNRNIKRLPNSICKIQNLQ 615

Query: 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHL 231
            L++ GC ELE LPK +R L+ LR   ++TKQ  L  S I +L SL  L+I    ++E +
Sbjct: 616 FLNVLGCKELEALPKGLRKLISLRSLDISTKQPVLPYSEITNLISLAHLSIGSSHNMESI 675

Query: 232 FEEIEQLSLLRTLLI---HSY------------------------------DDRK----N 254
           F  + +   L+TL +   HS                               DD +    N
Sbjct: 676 FGGV-KFPALKTLYVADCHSLKSLPLDVTNFPELETLFVQDCVNLDLELWKDDHEEQNLN 734

Query: 255 TRP---RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALET 311
             P   +L+ V    + QL+ LPQW LQ   ++L TL+I +C N   LP  L  +   + 
Sbjct: 735 GLPQLVKLKYVAFWGLPQLVALPQW-LQESANSLQTLIIKNCNNLEMLPEWLSTMTNQKA 793

Query: 312 LAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQI 365
           L I  CPKL SLP+++HHLT L+ L I GCP L ++C+P  GE W KI+HI  +
Sbjct: 794 LHISDCPKLISLPDNIHHLTALEHLHIRGCPELCKKCQPHVGEFWSKISHIKDV 847

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456041|ref|XP_002277479.1| PREDICTED: disease resistance protein RGA2 [Vitis vinifera]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 162/425 (38%), Positives = 229/425 (53%), Gaps = 74/425 (17%)

Query: 1   MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLA--- 57
           MA GL+ S  +   +EDIG RY+ ELLSRSFFQD+   ++G+  + FKMHDL+HDLA   
Sbjct: 451 MAEGLIHSSGQNAKMEDIGERYINELLSRSFFQDVEQLILGV-LYTFKMHDLVHDLAMFF 509

Query: 58  -----LLVNSDCQSIPKRVRHLSFAAANALRNDFSSL--LSYLGRLRTIFFSTDD-EKTS 109
                L++N   + IPKRV+H +F+     + +  +L  L  L  + TI+F   +    S
Sbjct: 510 AQPECLILNFHSKDIPKRVQHAAFSDTEWPKEECKALKFLEKLNNVHTIYFQMKNVAPRS 569

Query: 110 QSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS 169
           +SFV++C  + + +R+L+L++S  E  P+ +G++KH+R+LDLS N +IKKLP SIC+L  
Sbjct: 570 ESFVKACILRFKCIRILDLQDSNFEALPKSIGSMKHLRFLDLSGNKRIKKLPNSICKLYH 629

Query: 170 LQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL--QESGIRSLGSLRCLTISGCRD 227
           LQ L L  C ELEELP+ I  ++ LR  ++T KQ+ L  +E G+RSL SL+ L I  C +
Sbjct: 630 LQALSLSRCSELEELPRGIWSMISLRTVSITMKQRDLFGKEKGLRSLNSLQRLEIVDCLN 689

Query: 228 LEHLFEEIEQLSLLRTLLIH------------------------------SYDDRKNTRP 257
           LE L + +E L  LR L+I+                              S D     + 
Sbjct: 690 LEFLSKGMESLIELRMLVINDCPSLVSLSHGIKLLTALEVLAIGNCQKLESMDGEAEGQE 749

Query: 258 ------RLRRVFIKEITQLLELPQWLL-QCCTDTLHTLVIGDCPNFMALPGSLKDLEALE 310
                  L+ +F   + QL  LP+WLL +  ++TLH L I  C N  ALP +        
Sbjct: 750 DIQSFGSLQILFFDNLPQLEALPRWLLHEPTSNTLHHLKISQCSNLKALPAN-------- 801

Query: 311 TLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDE 370
                          D+  L +LK L I  CP L +RCKP TGEDW KIAHI +I  D  
Sbjct: 802 ---------------DLQKLASLKKLEIDDCPELIKRCKPKTGEDWQKIAHIPEIYFDGR 846

Query: 371 IIKSS 375
            I SS
Sbjct: 847 EIASS 851

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.628	0.166	0.347	2e-22
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.557	0.199	0.319	3.6e-12
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.618	0.196	0.268	4.5e-11
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.214	0.044	0.351	3.8e-09
UNIPROTKB|Q9BTT6	524	LRRC1 "Leucine-rich repeat-con	0.702	0.505	0.267	6.6e-09
MGI|MGI:2442313	524	Lrrc1 "leucine rich repeat con	0.713	0.513	0.263	6.6e-09
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.559	0.106	0.284	4.9e-08
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.840	0.244	0.255	8.4e-08
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.570	0.180	0.258	2.1e-07
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.161	0.067	0.360	2.1e-07

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
 Identities = 92/265 (34%), Positives = 124/265 (46%)

Query:     1 MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
             MA  LL        LEDIG  YL +L+++SFFQ L   M       F MHDLM+DLA  V
Sbjct:   444 MAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTS-----FVMHDLMNDLAKAV 498

Query:    61 NSD-C--------QSIPKRVRHLSFAAANALRNDFS-SLLSYLGR--LRTIF-FSTDDEK 107
             + D C          IP   RH SF+ +     D S +  S  G   LRTI  F++    
Sbjct:   499 SGDFCFRLEDDNIPEIPSTTRHFSFSRSQC---DASVAFRSICGAEFLRTILPFNSPTSL 555

Query:   108 TSQSFVESCFSKS----QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKS 163
              S    E   +        LR+L+L    +   P+ +  LK +RYLDLS ++KIK+LP+ 
Sbjct:   556 ESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLS-STKIKELPEF 614

Query:   164 ICELQSLQTXXXXXXXXXXXXPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTIS 223
             +C L +LQT            PK I  L+ LR+  L          GI+ L SL+ L+  
Sbjct:   615 VCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVEMPPGIKKLRSLQKLSNF 674

Query:   224 GCRDLEHL-FEEIEQLSLLR-TLLI 246
                 L      E+++LS LR TL I
Sbjct:   675 VIGRLSGAGLHELKELSHLRGTLRI 699

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 76/238 (31%), Positives = 111/238 (46%)

Query:     1 MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
             MA G LQ     ++LE++G  Y  EL SRS  Q         +T Y  MHD +++LA   
Sbjct:   452 MAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKT-------KTRYI-MHDFINELAQFA 503

Query:    61 NSD--------CQ-SIPKRVRHLSFAAAN-ALRNDFSSLLSYLGRLRTIF-FSTDDEKTS 109
             + +        C+  + +R R+LS+   N A   +F +L   +  LRT    S  +   S
Sbjct:   504 SGEFSSKFEDGCKLQVSERTRYLSYLRDNYAEPMEFEALRE-VKFLRTFLPLSLTNSSRS 562

Query:   110 ----QSFVESCFSKSQFLRVLNLRESAL-EVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI 164
                 Q   E        LRVL+L    +  + P    N+ H R+LDLSR ++++KLPKS+
Sbjct:   563 CCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSR-TELEKLPKSL 621

Query:   165 CELQSLQTXXXXXXXXXXXXPKDIRYLVILRVFALT-TKQKSLQESGIRSLGSLRCLT 221
             C + +LQT            P DI  L+ LR   L  TK + +     R L SL+ LT
Sbjct:   622 CYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTKLRQMPRRFGR-LKSLQTLT 678

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 66/246 (26%), Positives = 115/246 (46%)

Query:   111 SFVE--SCFSKSQFLRVLNLRE-SALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICEL 167
             S VE  S    +  L  L+L + S+L   P  +GNL +++ L L+R S + KLP S   +
Sbjct:   692 SLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNV 751

Query:   168 QSLQTXXXXXXXXXXXXPKDIRYLVILR-VFA-----LTTKQKSL-QESGIRSLGSLRCL 220
              SL+             P  I  +V L+ V+A     L     S+   + ++ L  L C 
Sbjct:   752 TSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCS 811

Query:   221 TISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQC 280
             ++  C         +E L+L   L +       N    L+ +++ + + L+ELP + ++ 
Sbjct:   812 SLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVI-NLQSLYLSDCSSLMELP-FTIEN 869

Query:   281 CTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGG 340
              T+ L TL +  C N + LP S+ ++  L++L + GC  L  LP  + +   L+ L++  
Sbjct:   870 ATN-LDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMK 928

Query:   341 CPALSE 346
             C +L E
Sbjct:   929 CSSLVE 934

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 123 (48.4 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
 Identities = 33/94 (35%), Positives = 48/94 (51%)

Query:     1 MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLV 60
             +A G ++  ++K  LE  G +YL EL++  F Q +       E  YF MHDLMHDLA  V
Sbjct:   583 IAQGFVEESSEK--LEQKGWKYLAELVNSGFLQQVESTRFSSE--YFVMHDLMHDLAQKV 638

Query:    61 N---------SDCQSIPKRVRHLSFAAANALRND 85
             +         S+C  +   +RHLS    +A R +
Sbjct:   639 SQTEYATIDGSECTELAPSIRHLSIVTDSAYRKE 672

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

UNIPROTKB|Q9BTT6 LRRC1 "Leucine-rich repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 78/292 (26%), Positives = 141/292 (48%)

Query:    59 LVNSDCQSIPKRVRH-LSFAAANALRNDFSSL---LSYLGRLRTIFFSTDD-EKTSQSFV 113
             L +++ Q +P  + + +     +  RN+   +   +S+   L+   FS +   +  +SF 
Sbjct:    66 LSDNEIQRLPPEIANFMQLVELDVSRNEIPEIPESISFCKALQVADFSGNPLTRLPESFP 125

Query:   114 ESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTX 173
             E      Q L  L++ + +L+  P  +GNL ++  L+L R + +  LP S+ +L+ L+  
Sbjct:   126 EL-----QNLTCLSVNDISLQSLPENIGNLYNLASLEL-RENLLTYLPDSLTQLRRLEEL 179

Query:   174 XXXXXXXXXXXPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFE 233
                        P+ I  L+ L+   L   Q S     I +L +L CL +S  R LE L E
Sbjct:   180 DLGNNEIYNL-PESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENR-LERLPE 237

Query:   234 EIEQLSLLRTLLIHSYDDRKNTRP----RLRRVFIKEITQ--LLELPQWLLQCCTDTLHT 287
             EI  L+ L  L+I    +   T P    +L+++ I ++ Q  L +LP+ + +C  ++L  
Sbjct:   238 EISGLTSLTDLVISQ--NLLETIPDGIGKLKKLSILKVDQNRLTQLPEAVGEC--ESLTE 293

Query:   288 LVIGDCPNFMALPGSLKDLEALETL-AIRGCPKLSSLPEDMHHLTTLKLLAI 338
             LV+ +    + LP S+  L+ L  L A R   KL SLP+++    +L +  +
Sbjct:   294 LVLTE-NQLLTLPKSIGKLKKLSNLNADRN--KLVSLPKEIGGCCSLTVFCV 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:2442313 Lrrc1 "leucine rich repeat containing 1" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 76/288 (26%), Positives = 134/288 (46%)

Query:    59 LVNSDCQSIPKRVRH-LSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCF 117
             L +++ Q +P  + + +     +  RND   +   +   + +  +           ES F
Sbjct:    66 LSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESIAFCKALQVADFSGNPLTRLPES-F 124

Query:   118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTXXXXX 177
              + Q L  L++ + +L+  P  +GNL ++  L+L R + +  LP S+ +L+ L+      
Sbjct:   125 PELQNLTCLSVNDISLQSLPENIGNLYNLASLEL-RENLLTYLPDSLTQLRRLEELDLGN 183

Query:   178 XXXXXXXPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQ 237
                    P+ I  L+ L+   L   Q S     I +L +L CL +S  R LE L EEI  
Sbjct:   184 NEIYNL-PESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENR-LERLPEEISG 241

Query:   238 LSLLRTLLIHSYDDRKNTRP----RLRRVFIKEITQ--LLELPQWLLQCCTDTLHTLVIG 291
             L+ L  L+I    +   T P    +L+++ I ++ Q  L +LP+ +  C  + L  LV+ 
Sbjct:   242 LTSLTYLVISQ--NLLETIPEGIGKLKKLSILKLDQNRLTQLPEAIGDC--ENLTELVLT 297

Query:   292 DCPNFMALPGSLKDLEALETL-AIRGCPKLSSLPEDMHHLTTLKLLAI 338
             +    + LP S+  L+ L  L A R   KL SLP+++    +L +  I
Sbjct:   298 E-NRLLTLPKSIGKLKKLSNLNADRN--KLVSLPKEIGGCCSLTMFCI 342

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 64/225 (28%), Positives = 103/225 (45%)

Query:   125 VLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTXXXXXXXXXXXX 184
             +LN   S +E+ P  MGN  +++ LDL   S + +LP SI    +LQ             
Sbjct:   788 ILNGCSSLVEL-PF-MGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKL 845

Query:   185 PKDIRYLVILRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR 242
             P  I     L +  L  K  SL E  + I  + +L  L +SGC  L  L   +  +S L+
Sbjct:   846 PSFIGNATNLEILDLR-KCSSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNISELQ 904

Query:   243 TLLIHSYDDRKNT------RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF 296
              L +H+  +             L R+ +   + L+ELP  +       L  L + +C N 
Sbjct:   905 VLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITN--LQELNLCNCSNL 962

Query:   297 MALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGC 341
             + LP S+ +L  L TL++  C KL +LP +++ L +L+ L +  C
Sbjct:   963 VKLPSSIGNLHLLFTLSLARCQKLEALPSNIN-LKSLERLDLTDC 1006

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 8.4e-08, P = 8.4e-08
 Identities = 92/360 (25%), Positives = 156/360 (43%)

Query:    13 EDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDL---MHDLALLVN---SDCQ- 65
             + LE +GM     L     F ++++    +     K+ +L   +  L+ LV    SDCQ 
Sbjct:   695 KSLETVGMSGCSSL---KHFPEISWNTRRLYLSSTKIEELPSSISRLSCLVKLDMSDCQR 751

Query:    66 --SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSK-SQF 122
               ++P  + HL   +  +L  D    L  L        S +  + S     + F + S  
Sbjct:   752 LRTLPSYLGHL--VSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTS 809

Query:   123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTXXXXXXXXXX 182
             + VL + E+++E  P ++ NL  +R LD+S N ++  LP SI EL+SL+           
Sbjct:   810 IEVLRISETSIEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLE 869

Query:   183 XXPKDI-RYLVILRVFALT-TKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSL 240
               P +I + +  LR F L  T  K L E+ I +L +L  L  S    +      I +L+ 
Sbjct:   870 SFPLEICQTMSCLRWFDLDRTSIKELPEN-IGNLVALEVLQASRTV-IRRAPWSIARLTR 927

Query:   241 LRTL-----------LIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLV 289
             L+ L           L+HS     +    LR + +  +  + E+P  +     + L   +
Sbjct:   928 LQVLAIGNSFFTPEGLLHSLCPPLSRFDDLRALSLSNMN-MTEIPNSIGNLW-NLLELDL 985

Query:   290 IGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMH--------HLTTLKLLAIGGC 341
              G+  NF  +P S+K L  L  L +  C +L +LP+++         H  T  L++I GC
Sbjct:   986 SGN--NFEFIPASIKRLTRLNRLNLNNCQRLQALPDELPRGLLYIYIHSCT-SLVSISGC 1042

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 60/232 (25%), Positives = 106/232 (45%)

Query:   126 LNLRESALEVC------PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTXXXXXXX 179
             +NLR+  L  C      P  +GN  ++  LDL+  S + +LP S  +  +LQ        
Sbjct:   699 INLRKLILSNCSSLIKLPSCIGNAINLEDLDLNGCSSLVELP-SFGDAINLQKLLLRYCS 757

Query:   180 XXXXXPKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEI--- 235
                  P  I   + LR   L      ++  S I +  +L  L ++GC +L  L   I   
Sbjct:   758 NLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNA 817

Query:   236 ---EQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGD 292
                ++L L R   +            L+ + + + + LLELP  +    T+ ++ + + +
Sbjct:   818 INLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNA-TNLVY-MNLSN 875

Query:   293 CPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL 344
             C N + LP S+ +L+ L+ L ++GC KL  LP +++ L +L +L +  C  L
Sbjct:   876 CSNLVELPLSIGNLQKLQELILKGCSKLEDLPININ-LESLDILVLNDCSML 926

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query:   306 LEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQI 365
             +  L TL I  C KL  LP+ + ++T+LK L I G     +    P GED+ K+ HI  +
Sbjct:   842 MPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDV 901

Query:   366 E 366
             +
Sbjct:   902 Q 902

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 73/237 (30%), Positives = 108/237 (45%), Gaps = 43/237 (18%)

Query: 123 LRVLNLRESA--LEVCPRKMG-NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCL 179
           LR ++LR S    E+    M  NL+    L LS  S + +LP SI  L  L+ LD+  C 
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMATNLET---LKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692

Query: 180 ELEELPKDIRYLVI----------LRVFALTTKQKS---LQESGIRSLGS-LR---CLTI 222
            LE LP  I    +          L+ F   +   S   L E+ I    S LR      +
Sbjct: 693 NLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDEL 752

Query: 223 SGCR-DLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELP---QWLL 278
             C    E L+E ++ L+ L T+L  S          L R+F+ +I  L+ELP   Q L 
Sbjct: 753 ILCEMKSEKLWERVQPLTPLMTMLSPS----------LTRLFLSDIPSLVELPSSIQNLH 802

Query: 279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKL 335
           +     L  L I +C N   LP  + +LE+LE+L + GC +L + P+   +++ L L
Sbjct: 803 K-----LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNL 853

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 63/231 (27%), Positives = 96/231 (41%), Gaps = 40/231 (17%)

Query: 153 RNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE--SG 210
           + SK++KL   +  L  L+ +DL G   L+E+P D+     L    L+    SL E  S 
Sbjct: 619 QGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD-CSSLVELPSS 676

Query: 211 IRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLL-----IHSYDDRKN----------- 254
           I+ L  L  L +S C +LE L   I   SL R  L     + S+ D              
Sbjct: 677 IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA 736

Query: 255 -----TRPRLRRVFIKEITQLLELPQW--------LLQCCTDTLHTLVIGDCPNFMALPG 301
                +  RL  +    + ++     W        L+   + +L  L + D P+ + LP 
Sbjct: 737 IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796

Query: 302 SLKDLEALETLAIRGCPKLSSLPE--DMHHLTTLKLLAIGGCPALSERCKP 350
           S+++L  LE L I  C  L +LP   ++  L +L L    GC  L  R  P
Sbjct: 797 SIQNLHKLEHLEIENCINLETLPTGINLESLESLDL---SGCSRL--RTFP 842

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 112 FVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL 170
           F+ +  SK + L+ +NL  +++    P  +G++  +  LDLS NS    +P+S+ +L SL
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 171 QTLDLEG 177
           + L+L G
Sbjct: 493 RILNLNG 499

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 123 LRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGC 178
           L+ L+L  + L V P      L +++ LDLS N+     P++   L SL++LDL G 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.46
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.26
KOG4341	483	consensus F-box protein containing LRR [General fu	99.26
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
KOG4341	483	consensus F-box protein containing LRR [General fu	98.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.84
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.78
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.78
PLN03150	623	hypothetical protein; Provisional	98.5
PLN03150	623	hypothetical protein; Provisional	98.43
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.42
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
PRK15386	426	type III secretion protein GogB; Provisional	98.3
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.28
PRK15386	426	type III secretion protein GogB; Provisional	98.24
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.13
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.91
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.17
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.55
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.92
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.75
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.15
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.14
KOG4308	478	consensus LRR-containing protein [Function unknown	91.66
KOG4308	478	consensus LRR-containing protein [Function unknown	90.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.12
smart00370	26	LRR Leucine-rich repeats, outliers.	85.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.0
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.64

>PLN03210 Resistant to P

Probab=99.94  E-value=1.8e-25  Score=233.65  Aligned_cols=315  Identities=26%  Similarity=0.419  Sum_probs=207.3

Q ss_pred             HHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHHhhcCCC----------------------CCCCCCcEEEEEec
Q 017094           22 YLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQ----------------------SIPKRVRHLSFAAA   79 (377)
Q Consensus        22 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~----------------------~~~~~l~~L~l~~~   79 (377)
                      -+..|++++|++...     +   .+.|||++|+|++++.....                      ....+++.+.+.-.
T Consensus       471 ~l~~L~~ksLi~~~~-----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~  542 (1153)
T PLN03210        471 GLKNLVDKSLIHVRE-----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID  542 (1153)
T ss_pred             ChHHHHhcCCEEEcC-----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence            388899999998753     2   58999999999999754321                      12234455555443


Q ss_pred             cccccch-hhhhcccCCceEEEeecCCchh--------h--H-----------------HHHHHHhhccCcccEEEeCCC
Q 017094           80 NALRNDF-SSLLSYLGRLRTIFFSTDDEKT--------S--Q-----------------SFVESCFSKSQFLRVLNLRES  131 (377)
Q Consensus        80 ~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--------~--~-----------------~~~~~~~~~~~~L~~L~L~~~  131 (377)
                      .+....+ ..+|..|++|+.|.+..+....        .  .                 ..++..+ .+.+|+.|++.++
T Consensus       543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s  621 (1153)
T PLN03210        543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS  621 (1153)
T ss_pred             ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc
Confidence            3333222 3467888888888775432100        0  0                 0011111 2467888888888


Q ss_pred             ccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc-cccCccc
Q 017094          132 ALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ-KSLQESG  210 (377)
Q Consensus       132 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~  210 (377)
                      .+..+|..+..+++|++|+++++..+..+|. ++.+++|++|++++|..+..+|..++++++|+.|++++|. +...|..
T Consensus       622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            8888888888899999999988777788875 7788999999999988888899999999999999999864 4444443


Q ss_pred             CCCCCCCCEEEccCCCCchhhHHhcc-------------------cCcccchhccccCCCCc-------------cCCCc
Q 017094          211 IRSLGSLRCLTISGCRDLEHLFEEIE-------------------QLSLLRTLLIHSYDDRK-------------NTRPR  258 (377)
Q Consensus       211 l~~l~~L~~L~l~~~~~~~~~~~~l~-------------------~l~~L~~L~l~~~~~~~-------------~~~~~  258 (377)
                      + ++++|+.|++++|..+..+|....                   .+++|+.|.+.++....             ..+++
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence            3 678888888888765544432111                   12333333333211100             12346


Q ss_pred             cceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC------------------
Q 017094          259 LRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL------------------  320 (377)
Q Consensus       259 L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~------------------  320 (377)
                      |+.|++++++.+..+|..+  ..+++|+.|++++|..+..+|..+ .+++|+.|++++|..+                  
T Consensus       780 L~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             chheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence            7777777777777777776  677777777777777666666544 4566666666655443                  


Q ss_pred             --CCCCcCCCCCCCcCeeeccCCCCccccCCC
Q 017094          321 --SSLPEDMHHLTTLKLLAIGGCPALSERCKP  350 (377)
Q Consensus       321 --~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  350 (377)
                        +.+|..+..+++|+.|++.+|++|+..+..
T Consensus       857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~  888 (1153)
T PLN03210        857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN  888 (1153)
T ss_pred             CCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence              334555566778888888888888776543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.2e-24  Score=226.65  Aligned_cols=268  Identities=21%  Similarity=0.249  Sum_probs=159.0

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCC------------------
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRES------------------  131 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~------------------  131 (377)
                      +++.|++.++.+... ++..+..+++|++|++++|.+.  .......+..+++|++|++++|                  
T Consensus        70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence            566666665544332 2445666666666666665432  1111122334444555554444                  


Q ss_pred             ----ccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc
Q 017094          132 ----ALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL  206 (377)
Q Consensus       132 ----~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~  206 (377)
                          .+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|++++|.+..
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence                443 345555566666666666554444556666666666666666655445556666666666666666665552


Q ss_pred             -CcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhh
Q 017094          207 -QESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQ  279 (377)
Q Consensus       207 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~  279 (377)
                       .|..++.+++|+.|++++|.....+|..++.+++|+.|++++|....      ...++|++|+++++.....+|.++  
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--  304 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--  304 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--
Confidence             34556666666666666666555556666666666666666665432      123466777777665555566666  


Q ss_pred             cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          280 CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      ..+++|+.|++++|.....+|.++..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            666777777777766555666666777777777777776555666666677777777777664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.2e-24  Score=226.44  Aligned_cols=266  Identities=18%  Similarity=0.184  Sum_probs=127.5

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCcCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~  147 (377)
                      +++++|.+.++.+... ++  ...+++|++|++++|...   ...+..+..+++|++|++++|.+. .+|..++.+++|+
T Consensus       118 ~~L~~L~Ls~n~l~~~-~p--~~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  191 (968)
T PLN00113        118 SSLRYLNLSNNNFTGS-IP--RGSIPNLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE  191 (968)
T ss_pred             CCCCEEECcCCccccc-cC--ccccCCCCEEECcCCccc---ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence            4667777766554321 11  133455666666555331   223334555555556655555543 4455555555555


Q ss_pred             eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc-CcccCCCCCCCCEEEccCCC
Q 017094          148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~  226 (377)
                      +|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.+.. .|..++.+++|+.|++++|.
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence            55555554444455555555555555555554444455555555555555555554442 23444555555555555544


Q ss_pred             CchhhHHhcccCcccchhccccCCCCc------------------------------cCCCccceEEecccccccccchh
Q 017094          227 DLEHLFEEIEQLSLLRTLLIHSYDDRK------------------------------NTRPRLRRVFIKEITQLLELPQW  276 (377)
Q Consensus       227 ~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------------------~~~~~L~~L~l~~~~~~~~l~~~  276 (377)
                      ....+|..+..+++|+.|++++|....                              ...++|+.|+++++.....+|.+
T Consensus       272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  351 (968)
T PLN00113        272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN  351 (968)
T ss_pred             eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence            444444444444455555554443321                              11234444444444333334444


Q ss_pred             hhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          277 LLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       277 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      +  ..+++|+.|++++|.....+|.++..+++|+.|++++|.....+|..+..+++|+.|++.+|.
T Consensus       352 l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        352 L--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS  415 (968)
T ss_pred             H--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence            3  344444444444443333334333344444444444443333444444445555555555553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.91  E-value=8.5e-25  Score=218.46  Aligned_cols=215  Identities=29%  Similarity=0.408  Sum_probs=170.6

Q ss_pred             CcccccccCCCCCCHHHHHHHHHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHHhhcCCC---------------
Q 017094            1 MAHGLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQ---------------   65 (377)
Q Consensus         1 iaeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~---------------   65 (377)
                      ||||||++.++++.+++.|..|+++|++++|++.....   ++...|+|||++||+|+|++...+               
T Consensus       438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~---~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~  514 (889)
T KOG4658|consen  438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE---GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLS  514 (889)
T ss_pred             HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc---cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcc
Confidence            69999999768999999999999999999999998765   677899999999999999776110               


Q ss_pred             -----CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCc-cccCCcC
Q 017094           66 -----SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESA-LEVCPRK  139 (377)
Q Consensus        66 -----~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~  139 (377)
                           ..+..+|++++.++.+....   .-..++.|++|.+.++.. ........+|..++.|++|||++|. +..+|..
T Consensus       515 ~~~~~~~~~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  515 EIPQVKSWNSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             ccccccchhheeEEEEeccchhhcc---CCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence                 01235688888877665533   344566899999998742 2344555679999999999999765 6799999


Q ss_pred             cCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCc---ccCCCCCC
Q 017094          140 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE---SGIRSLGS  216 (377)
Q Consensus       140 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~---~~l~~l~~  216 (377)
                      ++.+-+|++|++++ +.++.+|..+++++.|.+|++..+.....+|.....+++|++|.+.........   ..+..+.+
T Consensus       591 I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  591 IGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             HhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence            99999999999996 689999999999999999999988777777777778999999999876533222   33445555


Q ss_pred             CCEEEcc
Q 017094          217 LRCLTIS  223 (377)
Q Consensus       217 L~~L~l~  223 (377)
                      |+.+...
T Consensus       670 L~~ls~~  676 (889)
T KOG4658|consen  670 LENLSIT  676 (889)
T ss_pred             hhhheee
Confidence            5555443

>PLN03210 Resistant to P

Probab=99.87  E-value=2.9e-21  Score=202.25  Aligned_cols=267  Identities=23%  Similarity=0.282  Sum_probs=182.5

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCc-cccCCcCcCCCCcc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESA-LEVCPRKMGNLKHM  146 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~l~~L  146 (377)
                      |..++.|.+.++....  +|..+ ...+|+.|++.++...    .++..+..+++|+.|+|+++. +..+| .+..+++|
T Consensus       588 p~~Lr~L~~~~~~l~~--lP~~f-~~~~L~~L~L~~s~l~----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L  659 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRC--MPSNF-RPENLVKLQMQGSKLE----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL  659 (1153)
T ss_pred             CcccEEEEecCCCCCC--CCCcC-CccCCcEEECcCcccc----ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence            4456666666554333  23223 3466666666665432    222334566667777776654 34444 35566666


Q ss_pred             ceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC---------------------cccc
Q 017094          147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT---------------------KQKS  205 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~---------------------~~~~  205 (377)
                      ++|++++|..+..+|..+..+++|+.|++++|..+..+|..+ ++++|+.|++++                     +.+.
T Consensus       660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE  738 (1153)
T ss_pred             cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence            777766666666666666666666666666666666666544 445555555544                     3333


Q ss_pred             cCcccC------------------------------CCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc--
Q 017094          206 LQESGI------------------------------RSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK--  253 (377)
Q Consensus       206 ~~~~~l------------------------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--  253 (377)
                      ..|..+                              ..+++|+.|++++|.....+|..++.+++|+.|++++|..+.  
T Consensus       739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            222111                              113467788888887777788888899999999999887554  


Q ss_pred             ---cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCC
Q 017094          254 ---NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHL  330 (377)
Q Consensus       254 ---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  330 (377)
                         ...++|+.|++++|..+..+|.     ...+|+.|+++++ .+..+|.++..+++|+.|++++|+.++.+|.....+
T Consensus       819 P~~~~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L  892 (1153)
T PLN03210        819 PTGINLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL  892 (1153)
T ss_pred             CCCCCccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence               2346789999999988877764     3468999999885 467899999999999999999999999999888999


Q ss_pred             CCcCeeeccCCCCccccCC
Q 017094          331 TTLKLLAIGGCPALSERCK  349 (377)
Q Consensus       331 ~~L~~L~l~~c~~l~~~~~  349 (377)
                      ++|+.+++.+|++|+....
T Consensus       893 ~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        893 KHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             cCCCeeecCCCcccccccC
Confidence            9999999999999986543

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=1.6e-22  Score=186.46  Aligned_cols=273  Identities=24%  Similarity=0.290  Sum_probs=188.6

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~  147 (377)
                      +.+|++.+..++.....+|..+..+..|.+|+++.|...    ..+..+...+++-+|+|++|.+..+|.. +.++..|-
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~----EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR----EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh----hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            366777777776666667777778888888888876543    3445566667778888888888877765 45777888


Q ss_pred             eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccc--cCcccCCCCCCCCEEEccCC
Q 017094          148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKS--LQESGIRSLGSLRCLTISGC  225 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~~  225 (377)
                      +|++++ +.+..+|+.+..+.+|++|++++|.....--..+..+.+|+.|.+++++.+  .+|..+-.+.+|..++++.|
T Consensus       154 fLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            888885 477788888888888888888877543322233445666666777766554  34566667777777777765


Q ss_pred             CCchhhHHhcccCcccchhccccCCCCc-----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCC-------
Q 017094          226 RDLEHLFEEIEQLSLLRTLLIHSYDDRK-----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDC-------  293 (377)
Q Consensus       226 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~-------  293 (377)
                      + +..+|..+..+++|+.|++++|.+..     ....+|++|+++.+ .+..+|..+  ..+++|+.|...+|       
T Consensus       233 ~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~av--cKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  233 N-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAV--CKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             C-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHH--hhhHHHHHHHhccCcccccCC
Confidence            4 55677777777888888888777655     22336777777764 444566655  55566655555444       


Q ss_pred             -----------------CCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCC
Q 017094          294 -----------------PNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPP  351 (377)
Q Consensus       294 -----------------~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~  351 (377)
                                       ..++.+|+.++.|++|+.|.|+.|. +-.+|..+.-++.|+.|++..+|+|.--+.+.
T Consensus       309 PSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~  382 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPN  382 (1255)
T ss_pred             ccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence                             2345667778888888888888764 44478888888899999999999888777664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=2.8e-20  Score=170.30  Aligned_cols=297  Identities=18%  Similarity=0.211  Sum_probs=155.7

Q ss_pred             CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCC
Q 017094           66 SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLK  144 (377)
Q Consensus        66 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~  144 (377)
                      ..|...+.|.++++.+.+.. +..|.++++|+.+.+..|..    ..+|.+.....+|+.|+|.+|.+..+. +.+..++
T Consensus        75 ~lp~~t~~LdlsnNkl~~id-~~~f~nl~nLq~v~l~~N~L----t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~  149 (873)
T KOG4194|consen   75 FLPSQTQTLDLSNNKLSHID-FEFFYNLPNLQEVNLNKNEL----TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP  149 (873)
T ss_pred             cCccceeeeeccccccccCc-HHHHhcCCcceeeeeccchh----hhcccccccccceeEEeeeccccccccHHHHHhHh
Confidence            33445555555555444433 22355555555555554432    223333333344555555555554332 2344455


Q ss_pred             ccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccCc-ccCCCCCCCCEEE
Q 017094          145 HMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLT  221 (377)
Q Consensus       145 ~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~  221 (377)
                      .|+.||++.| .+..+|. .+..-.++++|++++| .+..+ ...|..+.+|..|.++.|.++..| ..|.+++.|+.|+
T Consensus       150 alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  150 ALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD  227 (873)
T ss_pred             hhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence            5555555543 3333332 1222345555555554 22222 223455556666666666666554 3444567777777


Q ss_pred             ccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCC
Q 017094          222 ISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPN  295 (377)
Q Consensus       222 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~  295 (377)
                      +..|.+-......+..+++|+.|.+..|++.+      ....++++|+|+.+....--..|+  .++.+|+.|+++.|..
T Consensus       228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAI  305 (873)
T ss_pred             ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc--cccchhhhhccchhhh
Confidence            76665322223456677777777777776655      224467777776653222222344  5566666666666655


Q ss_pred             CCCCCccCCCCccCceecccCcccCCCCC-------------------------cCCCCCCCcCeeeccCCCCccccCCC
Q 017094          296 FMALPGSLKDLEALETLAIRGCPKLSSLP-------------------------EDMHHLTTLKLLAIGGCPALSERCKP  350 (377)
Q Consensus       296 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-------------------------~~l~~l~~L~~L~l~~c~~l~~~~~~  350 (377)
                      -...++.|..+++|+.|+|++|. ++.++                         ..+..+++|++|++.++.  -.++.+
T Consensus       306 ~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~--ls~~IE  382 (873)
T KOG4194|consen  306 QRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE--LSWCIE  382 (873)
T ss_pred             heeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe--EEEEEe
Confidence            44455556666666666666653 22222                         123345677777776653  123344


Q ss_pred             CCCCCCCCCCccceEEeCCCccCC
Q 017094          351 PTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       351 ~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      +...-|..+..+..+.+.|+++++
T Consensus       383 Daa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  383 DAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             cchhhhccchhhhheeecCceeee
Confidence            455556677777777777777664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=3.9e-21  Score=177.34  Aligned_cols=262  Identities=22%  Similarity=0.291  Sum_probs=129.7

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      .+|-.+++++++....+|.....|+.++-|-+....    ...++..++.+.+|+.|.+.+|.+..+-..+..++.|+.+
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~----L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK----LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV   83 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhh----hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence            455555556655555555556666666655554321    2233444445555555555555544444444444444444


Q ss_pred             eccCCCccc--ccChhhcCCCcccEEeccCccccccCchhhccccccc------------------------EeeecCcc
Q 017094          150 DLSRNSKIK--KLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR------------------------VFALTTKQ  203 (377)
Q Consensus       150 ~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~------------------------~L~l~~~~  203 (377)
                      .++.| .++  .+|+.+..+..|..||+++| .+..+|..+..-+++-                        +|++++|.
T Consensus        84 ~~R~N-~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDN-NLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhcc-ccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            44433 121  34444444444444554443 3444444444444444                        44555554


Q ss_pred             cccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-cCCC------ccceEEecccccccccchh
Q 017094          204 KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-NTRP------RLRRVFIKEITQLLELPQW  276 (377)
Q Consensus       204 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~------~L~~L~l~~~~~~~~l~~~  276 (377)
                      +...|+.+..+..|++|.+++|.........+.+|++|+.|++++....- ..++      +|..++++. +.+..+|..
T Consensus       162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec  240 (1255)
T KOG0444|consen  162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC  240 (1255)
T ss_pred             hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH
Confidence            44444444445555555555544332223333444445555444322111 1111      344444443 234445555


Q ss_pred             hhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          277 LLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       277 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      +  ..+++|+.|++++|. ++.+....+...+|++|+++.| .++.+|..+..++.|+.|++.++.
T Consensus       241 l--y~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  241 L--YKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             H--hhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc
Confidence            5  455556666666543 3344434445556666666655 456677777777788877777664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.78  E-value=5.9e-20  Score=168.25  Aligned_cols=261  Identities=19%  Similarity=0.202  Sum_probs=166.4

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~  147 (377)
                      .++.+|.+.++.+.+.. ...|..+.+|-+|.++.|.+.   ......|+.+++|+.|+|..|.+... .-.|..++.|+
T Consensus       173 ~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrit---tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~  248 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRIT---TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ  248 (873)
T ss_pred             CCceEEeeccccccccc-cccccccchheeeecccCccc---ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence            35666666666665543 234666666666666665432   23334456666777777776666533 33566666777


Q ss_pred             eEeccCCCcccccCh-hhcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccC
Q 017094          148 YLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISG  224 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~  224 (377)
                      .|.+..| .+..+.+ +|..+.++++|++..|. +..+ ...+..+..|+.|++++|.+..+ +..+..+++|++|+++.
T Consensus       249 nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~  326 (873)
T KOG4194|consen  249 NLKLQRN-DISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS  326 (873)
T ss_pred             hhhhhhc-CcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence            7777654 4444433 35567778888887763 3333 34567788888888888887744 46788888888888888


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccc---cccchhhhhcCCCCccEEeecCCCC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQL---LELPQWLLQCCTDTLHTLVIGDCPN  295 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~---~~l~~~~~~~~~~~L~~L~l~~~~~  295 (377)
                      |+..+--+.++..+..|++|++++|....      ....+|++|+|+++...   ++-...+  .++++|+.|.+.+|. 
T Consensus       327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f--~gl~~LrkL~l~gNq-  403 (873)
T KOG4194|consen  327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF--NGLPSLRKLRLTGNQ-  403 (873)
T ss_pred             cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh--ccchhhhheeecCce-
Confidence            77655445567777788888888876544      22347777777776422   2222222  457788888888765 


Q ss_pred             CCCCCc-cCCCCccCceecccCcccCCCCCcCCCCCCCcCeeecc
Q 017094          296 FMALPG-SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIG  339 (377)
Q Consensus       296 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  339 (377)
                      ++.+|. .|.+++.|++|+|.+|...+.-|..+..+ .|++|-+.
T Consensus       404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            445543 46678888888888776655556666666 77777553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=1.2e-20  Score=165.51  Aligned_cols=105  Identities=30%  Similarity=0.451  Sum_probs=55.6

Q ss_pred             cCcccEEEeCCCccccCCcCcCCCCccceEeccCC---------------------CcccccChhhc-CCCcccEEeccC
Q 017094          120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRN---------------------SKIKKLPKSIC-ELQSLQTLDLEG  177 (377)
Q Consensus       120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~---------------------~~~~~l~~~~~-~l~~L~~L~l~~  177 (377)
                      |+.|+.||...|-+..+|+.++.+.+|..|++.+|                     +.++.+|.... .++++.+||+++
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence            45555555555555555555555555555555543                     23333343333 455555555555


Q ss_pred             ccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094          178 CLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       178 ~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  226 (377)
                      | .+.++|.++-.+.+|.+|++++|.++..|..++++ .|+.|-+.||.
T Consensus       262 N-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  262 N-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             c-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            4 45555555555555556666666555555555555 55555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=3.7e-20  Score=162.56  Aligned_cols=259  Identities=25%  Similarity=0.317  Sum_probs=202.3

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      .+..+.+.+++....  .+...++..+.+|.+.+|..    ...+.+++.+..++.++++.++++.+|+.++.+..|..|
T Consensus        46 ~l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l----~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKL----SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKL  119 (565)
T ss_pred             chhhhhhccCchhhc--cHhhhcccceeEEEeccchh----hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhh
Confidence            455566666665543  33577788888888887643    345566778888888888888888888888888888888


Q ss_pred             eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094          150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE  229 (377)
Q Consensus       150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  229 (377)
                      +.++| ....+|+.++.+..|+.++..+| .+.++|.++.++.+|..+++.+|.++..++..-.++.|++++...| .++
T Consensus       120 ~~s~n-~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~  196 (565)
T KOG0472|consen  120 DCSSN-ELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLE  196 (565)
T ss_pred             hcccc-ceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhh
Confidence            88875 66777888888888888888765 6788888888888888888888888877666656888888887764 467


Q ss_pred             hhHHhcccCcccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCC
Q 017094          230 HLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKD  305 (377)
Q Consensus       230 ~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~  305 (377)
                      .+|+.++.+.+|..|++..|....    ..+..|++++.+.+ .++-+|.... ..++.+..|++.+|+ ++.+|+.++-
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~-~~L~~l~vLDLRdNk-lke~Pde~cl  273 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHL-KHLNSLLVLDLRDNK-LKEVPDEICL  273 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHh-cccccceeeeccccc-cccCchHHHH
Confidence            788888888888888888887655    33446777777654 4455665552 578999999999965 8899999999


Q ss_pred             CccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          306 LEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       306 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      +++|++||+++| .++.+|..++++ +|+.|-+.|+|
T Consensus       274 LrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  274 LRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence            999999999987 678899999999 99999988886

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=1.4e-16  Score=145.39  Aligned_cols=177  Identities=18%  Similarity=0.084  Sum_probs=93.8

Q ss_pred             EEEeccccccchhhhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCcccc-------CCcCcCCCCcc
Q 017094           75 SFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALEV-------CPRKMGNLKHM  146 (377)
Q Consensus        75 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-------l~~~~~~l~~L  146 (377)
                      ++.+.......+...+..+++|+.|.++++.... ....+...+...+.++.++++++.+..       ++..+..+++|
T Consensus         4 ~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L   83 (319)
T cd00116           4 SLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL   83 (319)
T ss_pred             ccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce
Confidence            3444444433344456666667777777665431 122344445566667777776665442       12344556677


Q ss_pred             ceEeccCCCcccccChhhcCCCc---ccEEeccCccccc----cCchhhccc-ccccEeeecCcccccC-----cccCCC
Q 017094          147 RYLDLSRNSKIKKLPKSICELQS---LQTLDLEGCLELE----ELPKDIRYL-VILRVFALTTKQKSLQ-----ESGIRS  213 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~---L~~L~l~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~~~~~-----~~~l~~  213 (377)
                      +.|++++|......+..+..+.+   |++|++++|....    .+...+..+ ++|+.|++++|.++..     ...+..
T Consensus        84 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  163 (319)
T cd00116          84 QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA  163 (319)
T ss_pred             eEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh
Confidence            77777665443333444444433   7777776664321    122334455 6677777777665521     123445


Q ss_pred             CCCCCEEEccCCCCch----hhHHhcccCcccchhccccCCC
Q 017094          214 LGSLRCLTISGCRDLE----HLFEEIEQLSLLRTLLIHSYDD  251 (377)
Q Consensus       214 l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~  251 (377)
                      +++|++|++++|....    .++..+..+++|+.|++++|..
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            5667777776665432    2233344455666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=9.6e-17  Score=125.66  Aligned_cols=164  Identities=29%  Similarity=0.425  Sum_probs=124.3

Q ss_pred             CCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEE
Q 017094          141 GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCL  220 (377)
Q Consensus       141 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L  220 (377)
                      -.+.++..|.+++| .+..+|+.++.+++|+.|++.+| .++.+|..++.+++|+.|+++-|.+...|.+++.+|.|+.|
T Consensus        30 f~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   30 FNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL  107 (264)
T ss_pred             cchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence            34566677777764 66667777777777777777764 67777777778888888888877777777888888888888


Q ss_pred             EccCCCCch-hhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCC
Q 017094          221 TISGCRDLE-HLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL  299 (377)
Q Consensus       221 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l  299 (377)
                      +++.|+..+ .+|..+..|+.|+.|.++++++.                   -+|..+  +.+.+|+.|.+.+|. +-.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-------------------~lp~dv--g~lt~lqil~lrdnd-ll~l  165 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-------------------ILPPDV--GKLTNLQILSLRDND-LLSL  165 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-------------------cCChhh--hhhcceeEEeeccCc-hhhC
Confidence            888776433 45667778888999999888753                   467777  888899999998865 5578


Q ss_pred             CccCCCCccCceecccCcccCCCCCcCCCC
Q 017094          300 PGSLKDLEALETLAIRGCPKLSSLPEDMHH  329 (377)
Q Consensus       300 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  329 (377)
                      |..++.+..|++|.+.+| .++.+|..++.
T Consensus       166 pkeig~lt~lrelhiqgn-rl~vlppel~~  194 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGN-RLTVLPPELAN  194 (264)
T ss_pred             cHHHHHHHHHHHHhcccc-eeeecChhhhh
Confidence            888899999999999987 56767765543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.55  E-value=3.5e-14  Score=140.01  Aligned_cols=192  Identities=21%  Similarity=0.202  Sum_probs=106.0

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT  201 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  201 (377)
                      +|+.|++.+|.+..+|...   .+|+.|++++| .+..+|.   ..++|+.|++++| .+..+|..   ..+|+.|++++
T Consensus       263 sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~  331 (788)
T PRK15387        263 GLLELSIFSNPLTHLPALP---SGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYN  331 (788)
T ss_pred             ccceeeccCCchhhhhhch---hhcCEEECcCC-ccccccc---cccccceeECCCC-ccccCCCC---ccccccccccc
Confidence            4445555554444443321   34445555543 3444443   1245666666554 33444431   12345555555


Q ss_pred             cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhh
Q 017094          202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQ  279 (377)
Q Consensus       202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~  279 (377)
                      |.++.+|.   ...+|+.|++++|+.. .+|..   .++|+.|++++|....  ..+.+|+.|+++++ .+..+|..   
T Consensus       332 N~L~~LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-~Lt~LP~l---  400 (788)
T PRK15387        332 NQLTSLPT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVL---  400 (788)
T ss_pred             Cccccccc---cccccceEecCCCccC-CCCCC---CcccceehhhccccccCcccccccceEEecCC-cccCCCCc---
Confidence            55554432   1235777777766532 33321   2355666666654433  12346777777765 34455532   


Q ss_pred             cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          280 CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                        .++|+.|++++|. +..+|..   ..+|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus       401 --~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        401 --PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             --ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence              3567888888765 4556643   346777888876 456788777788888888888886

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.55  E-value=1.7e-15  Score=138.26  Aligned_cols=240  Identities=19%  Similarity=0.124  Sum_probs=165.5

Q ss_pred             EEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-----cCCcCcCCCCccceEeccCCCcc------cccChhhcCC
Q 017094           99 IFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-----VCPRKMGNLKHMRYLDLSRNSKI------KKLPKSICEL  167 (377)
Q Consensus        99 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~------~~l~~~~~~l  167 (377)
                      |++..+...  .......+..+.+|++|+++++.+.     .++..+...++|++|+++++...      ..++..+..+
T Consensus         3 l~L~~~~l~--~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLK--TERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccCccc--ccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            445444332  3344566777888999999999873     45666778888999999876433      1234567778


Q ss_pred             CcccEEeccCccccccCchhhccccc---ccEeeecCcccccC-----cccCCCC-CCCCEEEccCCCCch----hhHHh
Q 017094          168 QSLQTLDLEGCLELEELPKDIRYLVI---LRVFALTTKQKSLQ-----ESGIRSL-GSLRCLTISGCRDLE----HLFEE  234 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~~~p~~l~~l~~---L~~L~l~~~~~~~~-----~~~l~~l-~~L~~L~l~~~~~~~----~~~~~  234 (377)
                      ++|+.|++++|......+..+..+.+   |++|++++|.+...     ...+..+ ++|+.|++++|....    .+...
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            99999999998665555666655555   99999999987632     1345566 899999999998652    34455


Q ss_pred             cccCcccchhccccCCCCc----------cCCCccceEEecccccc----cccchhhhhcCCCCccEEeecCCCCCCCCC
Q 017094          235 IEQLSLLRTLLIHSYDDRK----------NTRPRLRRVFIKEITQL----LELPQWLLQCCTDTLHTLVIGDCPNFMALP  300 (377)
Q Consensus       235 l~~l~~L~~L~l~~~~~~~----------~~~~~L~~L~l~~~~~~----~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~  300 (377)
                      +..+++|++|++++|....          ...++|++|++++|...    ..++..+  ..+++|++|++++|...+.-.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~--~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL--ASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh--cccCCCCEEecCCCcCchHHH
Confidence            6778899999999987653          22358999999887532    1233333  567889999999876332111


Q ss_pred             ccC-----CCCccCceecccCcccCC----CCCcCCCCCCCcCeeeccCCC
Q 017094          301 GSL-----KDLEALETLAIRGCPKLS----SLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       301 ~~~-----~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      ..+     ...+.|++|++++|....    .+...+..+++|+++++++|+
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            111     134789999999885431    233445666889999998875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=2.2e-14  Score=142.07  Aligned_cols=199  Identities=21%  Similarity=0.267  Sum_probs=95.4

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT  201 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  201 (377)
                      +|+.|++++|.++.+|..+.  .+|+.|++++| .+..+|..+.  .+|+.|++++| .+..+|..+.  ++|+.|++++
T Consensus       221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~  292 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYD  292 (754)
T ss_pred             CCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCC
Confidence            55556666555555554332  34555565544 3445554432  35555666543 3444554332  3555566655


Q ss_pred             cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCcc---CCCccceEEecccccccccchhhh
Q 017094          202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKN---TRPRLRRVFIKEITQLLELPQWLL  278 (377)
Q Consensus       202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~L~~L~l~~~~~~~~l~~~~~  278 (377)
                      |.++..|..+.  ++|+.|++++|... .+|..+  .++|+.|++++|.....   .+++|+.|+++++. +..+|..+ 
T Consensus       293 N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-L~~LP~~l-  365 (754)
T PRK15370        293 NSIRTLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQ-ITVLPETL-  365 (754)
T ss_pred             CccccCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccCChhhcCcccEEECCCCC-CCcCChhh-
Confidence            55554433221  34555555554432 233222  13555555555543321   12356666666552 33444332 


Q ss_pred             hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCC----CCCCCcCeeeccCCC
Q 017094          279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM----HHLTTLKLLAIGGCP  342 (377)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~c~  342 (377)
                         .++|++|++++|. +..+|..+.  ..|+.|++++|. ++.+|..+    ..++++..|++.++|
T Consensus       366 ---p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        366 ---PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ---cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence               1456666666553 334554332  245666666552 33444332    223555666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=1.5e-14  Score=143.29  Aligned_cols=196  Identities=21%  Similarity=0.311  Sum_probs=100.2

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT  201 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  201 (377)
                      +|+.|++++|.+..+|..+.  .+|++|++++| .+..+|..+.  .+|+.|++++| .+..+|..+.  .+|+.|++++
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH  271 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence            56666666666665555433  35666666644 4455554332  35666666655 3445555443  3566666666


Q ss_pred             cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCcc---CCCccceEEecccccccccchhhh
Q 017094          202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKN---TRPRLRRVFIKEITQLLELPQWLL  278 (377)
Q Consensus       202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~L~~L~l~~~~~~~~l~~~~~  278 (377)
                      |.+...|..+.  ++|+.|++++|+. ..+|..+.  ++|+.|++++|.....   .+++|+.|+++++. +..+|..+ 
T Consensus       272 N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l-  344 (754)
T PRK15370        272 NKISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASL-  344 (754)
T ss_pred             CccCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhh-
Confidence            66555443332  3566666666542 22332221  2456666665544321   22456666666552 33454433 


Q ss_pred             hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCC
Q 017094          279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGC  341 (377)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c  341 (377)
                         +++|+.|++++|. +..+|..+  .++|++|++++| .++.+|..+.  ++|+.|++++|
T Consensus       345 ---~~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        345 ---PPELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN  398 (754)
T ss_pred             ---cCcccEEECCCCC-CCcCChhh--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC
Confidence               2456666666653 33455433  245666666665 3444554332  24566666655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.7e-16  Score=124.33  Aligned_cols=157  Identities=24%  Similarity=0.339  Sum_probs=136.9

Q ss_pred             hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC
Q 017094           89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ  168 (377)
Q Consensus        89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~  168 (377)
                      .+.++.+++.|.++.|...    .++..+..+.+|++|++.+|.+..+|..+..+++|+.|++.- +.+..+|.+|+.++
T Consensus        28 gLf~~s~ITrLtLSHNKl~----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p  102 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFP  102 (264)
T ss_pred             cccchhhhhhhhcccCcee----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCc
Confidence            4667788888888887643    344457788999999999999999999999999999999985 47889999999999


Q ss_pred             cccEEeccCcccc-ccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccc
Q 017094          169 SLQTLDLEGCLEL-EELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIH  247 (377)
Q Consensus       169 ~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  247 (377)
                      .|++||+.+|... ..+|..+..+..|+-|+++.|.+...|+.++++++|+.|.+.+|. +-.+|..++.++.|++|++.
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcc
Confidence            9999999997544 358999999999999999999999999999999999999999876 45688999999999999999


Q ss_pred             cCCC
Q 017094          248 SYDD  251 (377)
Q Consensus       248 ~~~~  251 (377)
                      ++..
T Consensus       182 gnrl  185 (264)
T KOG0617|consen  182 GNRL  185 (264)
T ss_pred             ccee
Confidence            8753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.49  E-value=2e-15  Score=145.54  Aligned_cols=221  Identities=21%  Similarity=0.283  Sum_probs=112.5

Q ss_pred             HHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcc-cc-
Q 017094          115 SCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRY-LV-  192 (377)
Q Consensus       115 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~-l~-  192 (377)
                      ..+..+.+|+.++..+|.+..+|..+....+|+.|.+.+| .++.+|+....++.|++|++..| .+..+|..+-. +. 
T Consensus       258 ~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNA  335 (1081)
T ss_pred             HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhH
Confidence            3344444444444444444444444444444444444432 34444444444445555555443 33333332110 00 


Q ss_pred             cccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEec
Q 017094          193 ILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIK  265 (377)
Q Consensus       193 ~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~  265 (377)
                      .|+.|+.+.+.+...+ .+=..++.|+.|.+.+|.......+.+..+.+|+.|++++|....      .....|++|+|+
T Consensus       336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS  415 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS  415 (1081)
T ss_pred             HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence            1222222222222221 011123445555555555555555555566666666666664433      122356666666


Q ss_pred             ccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCC-CCCcCCCCCCCcCeeeccCCCC
Q 017094          266 EITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS-SLPEDMHHLTTLKLLAIGGCPA  343 (377)
Q Consensus       266 ~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~c~~  343 (377)
                      ++ .++.+|..+  ..++.|++|...+|. +..+| .+..++.|+.+|++.|.... .+|... .-|+|++|+++|+..
T Consensus       416 GN-kL~~Lp~tv--a~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  416 GN-KLTTLPDTV--ANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cc-hhhhhhHHH--HhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence            64 556777666  566777777776654 55677 56778888888888664333 223322 227888888888764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.46  E-value=1.7e-13  Score=135.27  Aligned_cols=221  Identities=19%  Similarity=0.139  Sum_probs=156.9

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR  147 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~  147 (377)
                      ++++++|.+.++.+...  |.   ..++|++|++++|.+.    .++.   .+..|+.|++++|.+..+|..   +++|+
T Consensus       241 p~~Lk~LdLs~N~LtsL--P~---lp~sL~~L~Ls~N~L~----~Lp~---lp~~L~~L~Ls~N~Lt~LP~~---p~~L~  305 (788)
T PRK15387        241 PPELRTLEVSGNQLTSL--PV---LPPGLLELSIFSNPLT----HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQ  305 (788)
T ss_pred             CCCCcEEEecCCccCcc--cC---cccccceeeccCCchh----hhhh---chhhcCEEECcCCcccccccc---ccccc
Confidence            34566666666544432  21   1346666666665432    1222   235788999999999988763   47899


Q ss_pred             eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCC
Q 017094          148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~  227 (377)
                      .|++++| .+..+|..   ..+|+.|++++| .+..+|.   ...+|+.|++++|.++..|..   ..+|+.|++++|..
T Consensus       306 ~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~---lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L  374 (788)
T PRK15387        306 ELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPT---LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL  374 (788)
T ss_pred             eeECCCC-ccccCCCC---cccccccccccC-ccccccc---cccccceEecCCCccCCCCCC---Ccccceehhhcccc
Confidence            9999976 66677753   246888999887 5666764   235799999999999987643   45788889988764


Q ss_pred             chhhHHhcccCcccchhccccCCCCcc--CCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCC
Q 017094          228 LEHLFEEIEQLSLLRTLLIHSYDDRKN--TRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKD  305 (377)
Q Consensus       228 ~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~  305 (377)
                      . .+|..   ..+|+.|++++|.....  .+++|+.|+++++. +..+|..     +.+|+.|++++|. +..+|..+..
T Consensus       375 ~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~-LssIP~l-----~~~L~~L~Ls~Nq-Lt~LP~sl~~  443 (788)
T PRK15387        375 T-SLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLPML-----PSGLLSLSVYRNQ-LTRLPESLIH  443 (788)
T ss_pred             c-cCccc---ccccceEEecCCcccCCCCcccCCCEEEccCCc-CCCCCcc-----hhhhhhhhhccCc-ccccChHHhh
Confidence            3 45542   35789999999876542  24589999999975 5567743     3578899999876 6789999999


Q ss_pred             CccCceecccCcccCCCCCc
Q 017094          306 LEALETLAIRGCPKLSSLPE  325 (377)
Q Consensus       306 l~~L~~L~l~~~~~~~~~~~  325 (377)
                      +++|+.|++++|+.....+.
T Consensus       444 L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        444 LSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ccCCCeEECCCCCCCchHHH
Confidence            99999999999976655444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.46  E-value=3.1e-15  Score=144.34  Aligned_cols=93  Identities=29%  Similarity=0.403  Sum_probs=49.7

Q ss_pred             cCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094          120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL  199 (377)
Q Consensus       120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  199 (377)
                      .-+|+.|++++|.+..+|..+..+.+|+.|+++. +.+...|....++.+|++|.|.+ +.+..+|..+..+++|++|++
T Consensus        44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDL  121 (1081)
T ss_pred             eeeeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccccccc
Confidence            3345555555555555555555555555555553 34555555555555555555553 245555555555555555555


Q ss_pred             cCcccccCcccCCCC
Q 017094          200 TTKQKSLQESGIRSL  214 (377)
Q Consensus       200 ~~~~~~~~~~~l~~l  214 (377)
                      ++|.+...|..+..+
T Consensus       122 S~N~f~~~Pl~i~~l  136 (1081)
T KOG0618|consen  122 SFNHFGPIPLVIEVL  136 (1081)
T ss_pred             chhccCCCchhHHhh
Confidence            555555444333333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.26  E-value=2.8e-13  Score=119.43  Aligned_cols=129  Identities=22%  Similarity=0.239  Sum_probs=67.3

Q ss_pred             CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccceEeccCCCcccccCh-hhcCCCcccE
Q 017094           95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQT  172 (377)
Q Consensus        95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~  172 (377)
                      ....|.+..|.+   ....+.+|+.+++|+.|||++|.++.+ |.+|.+++.|..|-+-+++.+..+|. .|+.+..|+.
T Consensus        68 ~tveirLdqN~I---~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   68 ETVEIRLDQNQI---SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             cceEEEeccCCc---ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            334455555432   233344566666666666666666544 45566666655555555445555553 3445566666


Q ss_pred             EeccCccccccCchhhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccCCC
Q 017094          173 LDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISGCR  226 (377)
Q Consensus       173 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~  226 (377)
                      |.+.-|...-.....+..+++|..|.+..|.+..+.. .+..+.+++.+.+..|.
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            6554432212223345556666666666655554432 45555555555554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.26  E-value=2.5e-13  Score=120.58  Aligned_cols=348  Identities=18%  Similarity=0.226  Sum_probs=223.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccc----cCccCCceeEEEEchhHHHHHHHhhcCCC-----CCCCCCcEEEEEeccccc
Q 017094           13 EDLEDIGMRYLKELLSRSFFQDLT----FGMVGMETFYFKMHDLMHDLALLVNSDCQ-----SIPKRVRHLSFAAANALR   83 (377)
Q Consensus        13 ~~~~~~~~~~~~~L~~~~l~~~~~----~~~~~~~~~~~~~~d~~~d~~~~~~~~~~-----~~~~~l~~L~l~~~~~~~   83 (377)
                      .-+.|.--+.|.-|-.+++-+...    ++.- .-...+..|--+.++.+.+.....     .....++.|++.++....
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~-AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~  152 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL-ALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVG  152 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCC
Confidence            345666666777666666655544    1100 111123334334444444332111     111467888998886655


Q ss_pred             -cchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCc-cc--cCCcCcCCCCccceEeccCCCcccc
Q 017094           84 -NDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESA-LE--VCPRKMGNLKHMRYLDLSRNSKIKK  159 (377)
Q Consensus        84 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~~~~  159 (377)
                       .++...-..++++..|.+.++. ...+......-..|+.|+.|++..|. ++  .+......+++|+++++++|..+..
T Consensus       153 ~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~  231 (483)
T KOG4341|consen  153 DSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG  231 (483)
T ss_pred             cchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence             3344556789999999998886 45666777778899999999999864 33  2222445789999999999876553


Q ss_pred             --cChhhcCCCcccEEeccCcccccc--CchhhcccccccEeeecCcccccCcc---cCCCCCCCCEEEccCCCCchhhH
Q 017094          160 --LPKSICELQSLQTLDLEGCLELEE--LPKDIRYLVILRVFALTTKQKSLQES---GIRSLGSLRCLTISGCRDLEHLF  232 (377)
Q Consensus       160 --l~~~~~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~  232 (377)
                        +......++.++.+..+||...+.  +-..-..+..+..+++..|.......   .-..+..|+.|..+++......+
T Consensus       232 ~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~  311 (483)
T KOG4341|consen  232 NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV  311 (483)
T ss_pred             CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH
Confidence              223344677788888888743321  11112345556666665653332211   12346778888888877654332


Q ss_pred             -Hhc-ccCcccchhccccCCCCc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCC----
Q 017094          233 -EEI-EQLSLLRTLLIHSYDDRK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA----  298 (377)
Q Consensus       233 -~~l-~~l~~L~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~----  298 (377)
                       .++ .++.+|+.+-++.|....        ..++.|+.+++.+|-...+..-.-.+.+++.|+.+.++.|..+..    
T Consensus       312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~  391 (483)
T KOG4341|consen  312 LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR  391 (483)
T ss_pred             HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh
Confidence             333 457788888888876433        556688888888876554432222337889999999998865443    


Q ss_pred             -CCccCCCCccCceecccCcccCCC-CCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeC
Q 017094          299 -LPGSLKDLEALETLAIRGCPKLSS-LPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELD  368 (377)
Q Consensus       299 -l~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~  368 (377)
                       +...-.++..|+.+.+++|+.+++ .-..+..+++|+++++.+|..+++.....      ...|+|+++++
T Consensus       392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~------~~~~lp~i~v~  457 (483)
T KOG4341|consen  392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR------FATHLPNIKVH  457 (483)
T ss_pred             hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH------HHhhCccceeh
Confidence             244446788999999999998874 33456788999999999999888876654      34677777765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.24  E-value=2.2e-11  Score=122.85  Aligned_cols=129  Identities=27%  Similarity=0.388  Sum_probs=98.9

Q ss_pred             CCCcEEEEEecc--ccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCcc
Q 017094           69 KRVRHLSFAAAN--ALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM  146 (377)
Q Consensus        69 ~~l~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L  146 (377)
                      +++++|-+..+.  ....+ ...|..++.|++|++++|.   ....+|..++.+-+|++|+++++.++.+|..+++++.|
T Consensus       545 ~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence            379999998875  33333 3348889999999999863   35678888999999999999999999999999999999


Q ss_pred             ceEeccCCCcccccChhhcCCCcccEEeccCcc-c-cccCchhhcccccccEeeecC
Q 017094          147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCL-E-LEELPKDIRYLVILRVFALTT  201 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~-~~~~p~~l~~l~~L~~L~l~~  201 (377)
                      .+|++..+.....+|.....+++|++|.+.... . ....-..+.++.+|+.+....
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            999999877777777777779999999997643 1 111223445555565555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.21  E-value=2.3e-12  Score=113.81  Aligned_cols=248  Identities=18%  Similarity=0.188  Sum_probs=156.9

Q ss_pred             CCCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCC-CccccCCc-CcCC
Q 017094           65 QSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRE-SALEVCPR-KMGN  142 (377)
Q Consensus        65 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~l~~-~~~~  142 (377)
                      .+.|+....+.+..+.+.... +.+|..+++||.|+++.|.+   ...-+.+|..++.|..|.+.+ |++..+|+ .|++
T Consensus        63 ~~LP~~tveirLdqN~I~~iP-~~aF~~l~~LRrLdLS~N~I---s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g  138 (498)
T KOG4237|consen   63 ANLPPETVEIRLDQNQISSIP-PGAFKTLHRLRRLDLSKNNI---SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG  138 (498)
T ss_pred             ccCCCcceEEEeccCCcccCC-hhhccchhhhceecccccch---hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence            345678888899988888764 67899999999999999854   455667888899888887776 88998876 5888


Q ss_pred             CCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCch-hhcccccccEeeecCccccc-------------Cc
Q 017094          143 LKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQKSL-------------QE  208 (377)
Q Consensus       143 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~-------------~~  208 (377)
                      +..|+.|.+..|...-....++..+++|..|.+-+| ....++. .+..+..++.+.+..|.+.-             .+
T Consensus       139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~  217 (498)
T KOG4237|consen  139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP  217 (498)
T ss_pred             HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence            999999999876444455667888889988888875 5566655 56667777777666554110             00


Q ss_pred             ccCCCCC----------------------CCCEE--EccC-CCCchhhH-HhcccCcccchhccccCCCCc------cCC
Q 017094          209 SGIRSLG----------------------SLRCL--TISG-CRDLEHLF-EEIEQLSLLRTLLIHSYDDRK------NTR  256 (377)
Q Consensus       209 ~~l~~l~----------------------~L~~L--~l~~-~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~------~~~  256 (377)
                      .+++...                      .++.+  .+.+ +......| ..+..+++|++|++++|....      ...
T Consensus       218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence            1111110                      01111  0111 11111112 235567777777777765543      112


Q ss_pred             CccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094          257 PRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK  319 (377)
Q Consensus       257 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  319 (377)
                      ..+++|.|.++ .+..+...++ ..+..|+.|++.+|.....-|..|..+..|.+|++-.|+.
T Consensus       298 a~l~eL~L~~N-~l~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  298 AELQELYLTRN-KLEFVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhhcCcc-hHHHHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            24555555443 2333333333 5667777788877766555666777777777777766543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=2e-11  Score=106.33  Aligned_cols=168  Identities=20%  Similarity=0.142  Sum_probs=111.6

Q ss_pred             hhhhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCccc----cCC-------cCcCCCCccceEeccC
Q 017094           86 FSSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALE----VCP-------RKMGNLKHMRYLDLSR  153 (377)
Q Consensus        86 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~----~l~-------~~~~~l~~L~~L~l~~  153 (377)
                      +.+....+..++.|++++|.++. ....+...+.+-++|+..++++-.-.    .+|       +++..+++|++|+||.
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            34456677788888888887763 34445556777778888888764321    233       3445667888888888


Q ss_pred             CCcccccCh----hhcCCCcccEEeccCcccccc-------------CchhhcccccccEeeecCcccccCc-----ccC
Q 017094          154 NSKIKKLPK----SICELQSLQTLDLEGCLELEE-------------LPKDIRYLVILRVFALTTKQKSLQE-----SGI  211 (377)
Q Consensus       154 ~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~-------------~p~~l~~l~~L~~L~l~~~~~~~~~-----~~l  211 (377)
                      |......+.    .+.++..|++|++.+|..-..             ...-+++-++|+.+...+|++...+     ..+
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            765554443    345678888888887743211             1112356678888888888776432     456


Q ss_pred             CCCCCCCEEEccCCCCch----hhHHhcccCcccchhccccCCCCc
Q 017094          212 RSLGSLRCLTISGCRDLE----HLFEEIEQLSLLRTLLIHSYDDRK  253 (377)
Q Consensus       212 ~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~  253 (377)
                      ..++.|+.+.+..|.+..    .+...+.++++|+.|++.+|....
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            677888888888776432    344567788888888888887654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=1.3e-11  Score=113.91  Aligned_cols=192  Identities=24%  Similarity=0.379  Sum_probs=153.3

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT  201 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  201 (377)
                      --...|++.|.+..+|..++.+..|+.+.+..| .+..+|..++++..|.+|+++.| .+..+|..+..|+ |+.|-+++
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence            345678888888889988888888888888864 67788888999999999999886 6778888888887 88999999


Q ss_pred             cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcC
Q 017094          202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCC  281 (377)
Q Consensus       202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~  281 (377)
                      |.++..|..++....|..|+.+.|+ +..+|..++.+.+|+.|.+..|.                   +..+|..+  ..
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-------------------l~~lp~El--~~  210 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-------------------LEDLPEEL--CS  210 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-------------------hhhCCHHH--hC
Confidence            9999888888888889999988876 45677788888899999888764                   34677777  53


Q ss_pred             CCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCC---CCCCCcCeeeccCC
Q 017094          282 TDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM---HHLTTLKLLAIGGC  341 (377)
Q Consensus       282 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~c  341 (377)
                       -.|..||++.| .+..+|-.|..+..|++|.|.+|+. .+-|..+   +..--.++|+..-|
T Consensus       211 -LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  211 -LPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -CceeeeecccC-ceeecchhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence             35899999964 5788999999999999999999874 4444433   33334577888877

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=4.2e-10  Score=91.72  Aligned_cols=124  Identities=30%  Similarity=0.373  Sum_probs=41.9

Q ss_pred             CcccEEEeCCCccccCCcCcC-CCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhh-cccccccEee
Q 017094          121 QFLRVLNLRESALEVCPRKMG-NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDI-RYLVILRVFA  198 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~  198 (377)
                      ..++.|+|.++.++.+. .++ .+.+|+.|++++| .+..++. +..+++|++|++++| .+..++..+ ..+++|+.|+
T Consensus        19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEE
Confidence            35666777777766553 333 4566777777754 5555543 556677777777765 455554444 3567777777


Q ss_pred             ecCcccccCc--ccCCCCCCCCEEEccCCCCchh---hHHhcccCcccchhcccc
Q 017094          199 LTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEH---LFEEIEQLSLLRTLLIHS  248 (377)
Q Consensus       199 l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~  248 (377)
                      +++|.+....  ..+..+++|+.|++.+|.....   -...+..+|+|+.|+-..
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            7777665432  4556677788888777764321   233456677777776544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.01  E-value=2.3e-11  Score=112.22  Aligned_cols=195  Identities=24%  Similarity=0.315  Sum_probs=152.0

Q ss_pred             ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094           92 YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ  171 (377)
Q Consensus        92 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  171 (377)
                      .+..-...+++.|.+.    .++..+..|..|+.+.|..|.+-.+|..++.+..|.+|+++.| .+..+|..++.|+ |+
T Consensus        73 ~ltdt~~aDlsrNR~~----elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lk  146 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS----ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LK  146 (722)
T ss_pred             cccchhhhhccccccc----cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ce
Confidence            3444445666666443    3445566777889999999999999999999999999999975 7888998888775 88


Q ss_pred             EEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094          172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD  251 (377)
Q Consensus       172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  251 (377)
                      .|-+++| .+..+|..++.++.|.+|+.+.|.+...++.++.+.+|+.|.+..|+ +..+|..+..+ .|..|+++.|. 
T Consensus       147 vli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNk-  222 (722)
T KOG0532|consen  147 VLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNK-  222 (722)
T ss_pred             eEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCc-
Confidence            8888865 88999999999999999999999999999999999999999998876 45677777755 47888887654 


Q ss_pred             CccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC---CCccCceecccCc
Q 017094          252 RKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK---DLEALETLAIRGC  317 (377)
Q Consensus       252 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~---~l~~L~~L~l~~~  317 (377)
                                        +..+|..+  ..+..|++|.+.+|+ +..=|..++   ...--++|+..-|
T Consensus       223 ------------------is~iPv~f--r~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  223 ------------------ISYLPVDF--RKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ------------------eeecchhh--hhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence                              44788888  888999999999876 444444443   2223366777777

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.2e-10  Score=104.46  Aligned_cols=197  Identities=18%  Similarity=0.124  Sum_probs=99.1

Q ss_pred             CCCccceEeccCCCcccccC--hhhcCCCcccEEeccCccccc---cCchhhcccccccEeeecCcccccCc--ccCCCC
Q 017094          142 NLKHMRYLDLSRNSKIKKLP--KSICELQSLQTLDLEGCLELE---ELPKDIRYLVILRVFALTTKQKSLQE--SGIRSL  214 (377)
Q Consensus       142 ~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~---~~p~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l  214 (377)
                      ++++|+...+.+ ..+...+  .....|++++.||+++| .+.   .+......+|+|+.|+++.|.+....  ..-..+
T Consensus       119 n~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecC-ccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            344445555542 2333333  13344555555555554 222   12233455556666666655544221  111235


Q ss_pred             CCCCEEEccCCCCch-hhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccE
Q 017094          215 GSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT  287 (377)
Q Consensus       215 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~  287 (377)
                      +.|+.|.+++|.... .+...+..+|+|+.|.+..|....      ..+..|++|+|++++.+ +++..-.-+.+|.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence            556666666665432 233334456666666666663211      22335666666665433 3332111167788888


Q ss_pred             EeecCCCCCC-CCCcc-----CCCCccCceecccCcccCCCCC--cCCCCCCCcCeeeccCCC
Q 017094          288 LVIGDCPNFM-ALPGS-----LKDLEALETLAIRGCPKLSSLP--EDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       288 L~l~~~~~~~-~l~~~-----~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~c~  342 (377)
                      |.++.|..-+ ..|+.     ...+++|++|++..|+. .+++  ..+..+++|+.|.+..++
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhhhhhccccc
Confidence            8888765322 12332     34688888888888743 3333  224456677776655543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.8e-10  Score=103.25  Aligned_cols=212  Identities=17%  Similarity=0.094  Sum_probs=97.0

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      +++..++..+.............|++++.|+++.|-+ .....+......+++|+.|+|+.|.+........        
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~-~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--------  192 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF-HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT--------  192 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhH-HhHHHHHHHHHhcccchhcccccccccCCccccc--------
Confidence            4444455444333321112344555555555555422 2223333445555555555555555432211110        


Q ss_pred             eccCCCcccccChhhcCCCcccEEeccCccccc-cCchhhcccccccEeeecCcccc-cCcccCCCCCCCCEEEccCCCC
Q 017094          150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELE-ELPKDIRYLVILRVFALTTKQKS-LQESGIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~  227 (377)
                                    -..+++|+.|.+++|.... .+...+..+|+|+.|++.+|... .......-+..|++|+|++|+.
T Consensus       193 --------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  193 --------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             --------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence                          0123445555555543221 12223344555555555555311 1112233344566666666654


Q ss_pred             chh-hHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCC--ccCC
Q 017094          228 LEH-LFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALP--GSLK  304 (377)
Q Consensus       228 ~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~~  304 (377)
                      ... .....+.++.|+.|+++.++......+..+.++.            .  ..+++|++|++..|+. ..++  ..+.
T Consensus       259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k------------t--~~f~kL~~L~i~~N~I-~~w~sl~~l~  323 (505)
T KOG3207|consen  259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK------------T--HTFPKLEYLNISENNI-RDWRSLNHLR  323 (505)
T ss_pred             cccccccccccccchhhhhccccCcchhcCCCccchhh------------h--cccccceeeecccCcc-ccccccchhh
Confidence            331 1233556666666666666543321111111110            1  4567888888887663 2222  1244


Q ss_pred             CCccCceecccCccc
Q 017094          305 DLEALETLAIRGCPK  319 (377)
Q Consensus       305 ~l~~L~~L~l~~~~~  319 (377)
                      .+++|+.|.+..+..
T Consensus       324 ~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  324 TLENLKHLRITLNYL  338 (505)
T ss_pred             ccchhhhhhcccccc
Confidence            566777777666544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.93  E-value=1.1e-09  Score=102.90  Aligned_cols=178  Identities=27%  Similarity=0.346  Sum_probs=129.6

Q ss_pred             hhccCcccEEEeCCCccccCCcCcCCCC-ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccccc
Q 017094          117 FSKSQFLRVLNLRESALEVCPRKMGNLK-HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR  195 (377)
Q Consensus       117 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  195 (377)
                      +...+.++.|++.++.+..++.....++ +|+.|++++| .+..+|..+..+++|+.|++++| .+..+|.....+++|+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence            4445789999999999999988888885 9999999964 77788767889999999999986 6777877777889999


Q ss_pred             EeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccch
Q 017094          196 VFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQ  275 (377)
Q Consensus       196 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~  275 (377)
                      .|++++|.+...+..+..+..|+++.+++|.. ...+..+..+.++..+.+.++...                   .++.
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~-------------------~~~~  249 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-------------------DLPE  249 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceee-------------------eccc
Confidence            99999999998876666777799999988752 334455666777777776665432                   1233


Q ss_pred             hhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC
Q 017094          276 WLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL  320 (377)
Q Consensus       276 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  320 (377)
                      .+  ..++.+++|++++|. +..++. ++.+.+|+.|+++++...
T Consensus       250 ~~--~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         250 SI--GNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             hh--ccccccceecccccc-cccccc-ccccCccCEEeccCcccc
Confidence            33  555667777776654 334443 566677777777765443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=2.9e-10  Score=97.34  Aligned_cols=130  Identities=28%  Similarity=0.248  Sum_probs=109.1

Q ss_pred             cCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094          120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL  199 (377)
Q Consensus       120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  199 (377)
                      ...|+.+||++|.++.+-..+.-+++++.|++++| .+..+.. +..+++|+.||+++| .+.++...-..+.+++.|.+
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence            45789999999999999889999999999999987 4555544 889999999999997 56666555567889999999


Q ss_pred             cCcccccCcccCCCCCCCCEEEccCCCCch-hhHHhcccCcccchhccccCCCCc
Q 017094          200 TTKQKSLQESGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLIHSYDDRK  253 (377)
Q Consensus       200 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~  253 (377)
                      ++|.+... ++++++-+|..|++.+|++.. .....++++|.|+.+.+.+|+...
T Consensus       360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            99988876 689999999999999988543 234679999999999999998654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=5.5e-10  Score=97.50  Aligned_cols=230  Identities=20%  Similarity=0.192  Sum_probs=156.6

Q ss_pred             HHHHHHHhhccCcccEEEeCCCccc-----cCCcCcCCCCccceEeccCCCccc----ccCh-------hhcCCCcccEE
Q 017094          110 QSFVESCFSKSQFLRVLNLRESALE-----VCPRKMGNLKHMRYLDLSRNSKIK----KLPK-------SICELQSLQTL  173 (377)
Q Consensus       110 ~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~l~~-------~~~~l~~L~~L  173 (377)
                      ...+......+..++.++|++|.+.     .+.+.+...++|+..+++.- ..+    .+|+       ++..+++|++|
T Consensus        19 ~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l   97 (382)
T KOG1909|consen   19 EKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKL   97 (382)
T ss_pred             hhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence            3445566788999999999999986     34456677789999999842 332    3343       45567899999


Q ss_pred             eccCccccccCchh----hcccccccEeeecCcccccCc--------------ccCCCCCCCCEEEccCCCCc----hhh
Q 017094          174 DLEGCLELEELPKD----IRYLVILRVFALTTKQKSLQE--------------SGIRSLGSLRCLTISGCRDL----EHL  231 (377)
Q Consensus       174 ~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~~~~--------------~~l~~l~~L~~L~l~~~~~~----~~~  231 (377)
                      +|++|..-...+..    +.++..|++|++.+|.+....              ..+++-+.|+++....|..-    ..+
T Consensus        98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen   98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence            99998665554443    577899999999999776331              23566788999998887632    344


Q ss_pred             HHhcccCcccchhccccCCCCc----------cCCCccceEEecccccccc----cchhhhhcCCCCccEEeecCCCCCC
Q 017094          232 FEEIEQLSLLRTLLIHSYDDRK----------NTRPRLRRVFIKEITQLLE----LPQWLLQCCTDTLHTLVIGDCPNFM  297 (377)
Q Consensus       232 ~~~l~~l~~L~~L~l~~~~~~~----------~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~~~L~~L~l~~~~~~~  297 (377)
                      ...+...+.|+.+.+..|++..          ..+++|+.|+|+++.....    +...+  ..++.|+.|++++|..-.
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--SSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--cccchheeeccccccccc
Confidence            5567778999999999988766          4567888888887653322    22222  455677888888774322


Q ss_pred             C----CCccC-CCCccCceecccCcccCCC----CCcCCCCCCCcCeeeccCCC
Q 017094          298 A----LPGSL-KDLEALETLAIRGCPKLSS----LPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       298 ~----l~~~~-~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~c~  342 (377)
                      .    +...+ ...|+|++|.+.+|....+    +...+...|.|+.|++.+|.
T Consensus       256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            1    12222 2577888888888754331    12223446788888888875

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=2e-09  Score=101.20  Aligned_cols=193  Identities=29%  Similarity=0.359  Sum_probs=145.5

Q ss_pred             EEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC-cccEEeccCccccccCchhhcccccccEeeecCcc
Q 017094          125 VLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ-SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ  203 (377)
Q Consensus       125 ~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  203 (377)
                      .+++..+.+......+..++.++.|++.+ ..+..+++....+. +|+.|+++++ .+..+|..++.+++|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence            57777777654445566668889999985 47778888777774 8999999886 677777778899999999999999


Q ss_pred             cccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCC
Q 017094          204 KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTD  283 (377)
Q Consensus       204 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~  283 (377)
                      +...+...+..+.|+.|++++|+. ..++..++....|+++.++++...                   ..+..+  ..+.
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~-------------------~~~~~~--~~~~  232 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-------------------ELLSSL--SNLK  232 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcce-------------------ecchhh--hhcc
Confidence            988876666888999999988763 556665555666888888876421                   333333  5667


Q ss_pred             CccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCc
Q 017094          284 TLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL  344 (377)
Q Consensus       284 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  344 (377)
                      ++..+.+.++. +..++..+..+++++.|++++| .++.++. +..+.+++.|+++++...
T Consensus       233 ~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         233 NLSGLELSNNK-LEDLPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccccCCce-eeeccchhccccccceeccccc-ccccccc-ccccCccCEEeccCcccc
Confidence            77777766654 4445777889999999999987 5666666 888999999999987544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=4.5e-10  Score=96.21  Aligned_cols=206  Identities=18%  Similarity=0.199  Sum_probs=106.9

Q ss_pred             hhhhcccCCceEEEeecCCch-----hhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCccccc-
Q 017094           87 SSLLSYLGRLRTIFFSTDDEK-----TSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKL-  160 (377)
Q Consensus        87 ~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-  160 (377)
                      ...+..+..|..|.+++..-.     .....++..+.-+++|+.+.++.|.-+.+......-+.|.++.+.. +.+... 
T Consensus       175 ~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~-s~~~~~~  253 (490)
T KOG1259|consen  175 SHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHN-TTIQDVP  253 (490)
T ss_pred             HHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeec-ccccccc
Confidence            344555666777766654321     1122233334556677777777766554443333345666666653 222211 


Q ss_pred             ---Ch--------------------hhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCC
Q 017094          161 ---PK--------------------SICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSL  217 (377)
Q Consensus       161 ---~~--------------------~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L  217 (377)
                         |.                    .+-.++.|+++|+++| .+..+.....-.|.++.|++++|.+.... .+..+++|
T Consensus       254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L  331 (490)
T KOG1259|consen  254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQL  331 (490)
T ss_pred             cccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeeh-hhhhcccc
Confidence               11                    1112355666666664 45555555555666666666666666552 36666666


Q ss_pred             CEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCC
Q 017094          218 RCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM  297 (377)
Q Consensus       218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~  297 (377)
                      ..|++++|.. ..+...-..+-++++|.++.|...                   ++ ..+  ..+-+|..|++++|. +.
T Consensus       332 ~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N~iE-------------------~L-SGL--~KLYSLvnLDl~~N~-Ie  387 (490)
T KOG1259|consen  332 QLLDLSGNLL-AECVGWHLKLGNIKTLKLAQNKIE-------------------TL-SGL--RKLYSLVNLDLSSNQ-IE  387 (490)
T ss_pred             eEeecccchh-HhhhhhHhhhcCEeeeehhhhhHh-------------------hh-hhh--Hhhhhheeccccccc-hh
Confidence            6666666542 222222223445555555554321                   11 112  445567777777764 22


Q ss_pred             CCC--ccCCCCccCceecccCccc
Q 017094          298 ALP--GSLKDLEALETLAIRGCPK  319 (377)
Q Consensus       298 ~l~--~~~~~l~~L~~L~l~~~~~  319 (377)
                      .+.  ..++.+|.|+.+.+.+|+.
T Consensus       388 ~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  388 ELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hHHHhcccccccHHHHHhhcCCCc
Confidence            221  2467777888888777764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.87  E-value=2.3e-10  Score=102.09  Aligned_cols=256  Identities=16%  Similarity=0.152  Sum_probs=159.4

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc---cCCcCcCCCCccceEeccCCCcccccC--hhhcCCC
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE---VCPRKMGNLKHMRYLDLSRNSKIKKLP--KSICELQ  168 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~  168 (377)
                      ..|+.|.+.|+.- .....+..+...+++++.|.+.+|...   .+-..-..+++|++|++..|..++...  .....++
T Consensus       138 g~lk~LSlrG~r~-v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRA-VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccc-CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            4677888877642 445566667778888888888777622   222334467888888888776655321  1223577


Q ss_pred             cccEEeccCcccccc--CchhhcccccccEeeecCcccccCc---ccCCCCCCCCEEEccCCCCchhh--HHhcccCccc
Q 017094          169 SLQTLDLEGCLELEE--LPKDIRYLVILRVFALTTKQKSLQE---SGIRSLGSLRCLTISGCRDLEHL--FEEIEQLSLL  241 (377)
Q Consensus       169 ~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L  241 (377)
                      +|++|++++|..+..  +-.-...++.++.+...+|.-....   ..-+.++.+.++++..|..++..  ...-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            888888888765543  2233455566666666655333221   11233444556665566544322  2223456677


Q ss_pred             chhccccCCCCc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCC--CCccCCCCccCce
Q 017094          242 RTLLIHSYDDRK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA--LPGSLKDLEALET  311 (377)
Q Consensus       242 ~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~  311 (377)
                      +.+..++|...+        ..+++|+.|.+.+|..+.+..-..++.+++.|+.+++..|.....  +-..-.+++.|++
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            788777776654        556788888888887666655444556777888888877754332  2222347888999


Q ss_pred             ecccCcccCCCC-----CcCCCCCCCcCeeeccCCCCccccCCC
Q 017094          312 LAIRGCPKLSSL-----PEDMHHLTTLKLLAIGGCPALSERCKP  350 (377)
Q Consensus       312 L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~c~~l~~~~~~  350 (377)
                      |.++.|..+++.     ...-..+..|..+.+++||.+++...+
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence            999888777653     222345677888899999988887555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.3e-10  Score=97.81  Aligned_cols=174  Identities=17%  Similarity=0.118  Sum_probs=128.1

Q ss_pred             CcccEEeccCccccc--cCchhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCchhhHH--hcccCcccc
Q 017094          168 QSLQTLDLEGCLELE--ELPKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFE--EIEQLSLLR  242 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~  242 (377)
                      ..|++||++.. .+.  .+-..++.|.+|+.|.+.+.++... ...+.+-.+|+.|+++.|...++...  .+.+|+.|.
T Consensus       185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            35899999864 333  2444578899999999999988854 36788889999999999987665432  367899999


Q ss_pred             hhccccCCCCc--------cCCCccceEEeccccccccc-chhhhhcCCCCccEEeecCCCCCCC-CCccCCCCccCcee
Q 017094          243 TLLIHSYDDRK--------NTRPRLRRVFIKEITQLLEL-PQWLLQCCTDTLHTLVIGDCPNFMA-LPGSLKDLEALETL  312 (377)
Q Consensus       243 ~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L  312 (377)
                      .|++++|....        .-.+.|+.|+|+++...-.. -...+...+|+|..|++++|-.+.. ....+..++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            99999998765        33568999999998632111 1222337889999999999876554 33346689999999


Q ss_pred             cccCcccCC-CCCcCCCCCCCcCeeeccCCC
Q 017094          313 AIRGCPKLS-SLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       313 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      .++.|..+. +-.-.+...|+|.+|++.+|-
T Consensus       344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            999997654 111125678999999998874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.1e-09  Score=93.67  Aligned_cols=180  Identities=21%  Similarity=0.203  Sum_probs=99.3

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCcCCCCccceEeccCCCccccc--ChhhcCCCcc
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKL--PKSICELQSL  170 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L  170 (377)
                      +.|+.++++...  .....+...++.|.+|+.|.+++..+. .+...++.-.+|+.|+++.|+.++.-  .-.+.+|+.|
T Consensus       185 sRlq~lDLS~s~--it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSV--ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhh--eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            356677776543  234455556777777777777777665 33445556667777777776655532  2234567777


Q ss_pred             cEEeccCccccccCch-hhcc-cccccEeeecCcccccCc----ccCCCCCCCCEEEccCCCCch-hhHHhcccCcccch
Q 017094          171 QTLDLEGCLELEELPK-DIRY-LVILRVFALTTKQKSLQE----SGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRT  243 (377)
Q Consensus       171 ~~L~l~~~~~~~~~p~-~l~~-l~~L~~L~l~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~  243 (377)
                      ..|++++|......-. .+.. -++|..|+++++.-....    .-...+++|.+|++++|..+. .....+.+++.|++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            7777777643322111 1111 235666666665332211    223456677777776665443 33344556666666


Q ss_pred             hccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCC
Q 017094          244 LLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCP  294 (377)
Q Consensus       244 L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~  294 (377)
                      |.++.|..+.                 .+.-..+  ...|.|.+|++.+|-
T Consensus       343 lSlsRCY~i~-----------------p~~~~~l--~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  343 LSLSRCYDII-----------------PETLLEL--NSKPSLVYLDVFGCV  374 (419)
T ss_pred             eehhhhcCCC-----------------hHHeeee--ccCcceEEEEecccc
Confidence            6666655332                 0111122  466778888887764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.78  E-value=5.7e-09  Score=85.11  Aligned_cols=128  Identities=24%  Similarity=0.322  Sum_probs=50.8

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhh-ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhh-cCC
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFS-KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI-CEL  167 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l  167 (377)
                      +.+...++.|++.++....    +.. +. .+.+|+.|++++|.+..+. .+..+++|++|++++| .+..++..+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~----Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST----IEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL   87 (175)
T ss_dssp             -------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred             ccccccccccccccccccc----ccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence            4455567888888875432    222 33 5678899999999988774 5777889999999865 677776555 358


Q ss_pred             CcccEEeccCccccccCc--hhhcccccccEeeecCcccccCc----ccCCCCCCCCEEEccCC
Q 017094          168 QSLQTLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQE----SGIRSLGSLRCLTISGC  225 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~----~~l~~l~~L~~L~l~~~  225 (377)
                      ++|++|++++| .+..+.  ..+..+++|+.|++.+|.+...+    ..+..+|+|+.||-...
T Consensus        88 p~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   88 PNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             CcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            89999999887 343331  34678889999999998887543    34567889999876543

>PLN03150 hypothetical protein; Provisional

Probab=98.50  E-value=2.5e-07  Score=91.54  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=89.7

Q ss_pred             ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc-CcccCCCCCCCCEEEcc
Q 017094          145 HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTIS  223 (377)
Q Consensus       145 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~  223 (377)
                      .+..|++++|.....+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+.. .|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47888998776666888889999999999999987767889899999999999999998884 56778999999999999


Q ss_pred             CCCCchhhHHhcccC-cccchhccccCCCCc
Q 017094          224 GCRDLEHLFEEIEQL-SLLRTLLIHSYDDRK  253 (377)
Q Consensus       224 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~  253 (377)
                      +|+....+|..++.. .++..+++.+|..+.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            998877888877653 456677787776543

>PLN03150 hypothetical protein; Provisional

Probab=98.43  E-value=3.9e-07  Score=90.22  Aligned_cols=102  Identities=20%  Similarity=0.131  Sum_probs=82.0

Q ss_pred             cccEEeccCccccccCchhhcccccccEeeecCcccc-cCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccc
Q 017094          169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKS-LQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIH  247 (377)
Q Consensus       169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  247 (377)
                      .++.|++++|...+.+|..+..+++|+.|++++|.+. ..|..++.+++|+.|++++|+....+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999988777788999999999999999999887 456678999999999999998888889999999999999999


Q ss_pred             cCCCCccCCC-------ccceEEecccccc
Q 017094          248 SYDDRKNTRP-------RLRRVFIKEITQL  270 (377)
Q Consensus       248 ~~~~~~~~~~-------~L~~L~l~~~~~~  270 (377)
                      +|......+.       ++..+++.+++.+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            9876543322       3445666665443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.42  E-value=7.4e-08  Score=91.01  Aligned_cols=107  Identities=28%  Similarity=0.381  Sum_probs=64.6

Q ss_pred             HhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccccc
Q 017094          116 CFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR  195 (377)
Q Consensus       116 ~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  195 (377)
                      .+..+.+|+.|++.++.+..+...+..+++|++|++++| .++.+.. +..++.|+.|++.+| .+..+. .+..+++|+
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~  165 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGN-LISDIS-GLESLKSLK  165 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccC-cchhcc-CCccchhhh
Confidence            356666777777777777666544666677777777754 4444433 555666777777765 333332 344466666


Q ss_pred             EeeecCcccccCccc-CCCCCCCCEEEccCCC
Q 017094          196 VFALTTKQKSLQESG-IRSLGSLRCLTISGCR  226 (377)
Q Consensus       196 ~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  226 (377)
                      .+++++|.+..+... ...+.+++.+.+.+|.
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            677777666655322 4556666666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.39  E-value=6e-07  Score=60.01  Aligned_cols=57  Identities=32%  Similarity=0.513  Sum_probs=36.3

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCc
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGC  178 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~  178 (377)
                      ++|++|++++|.+..+|. .+..+++|++|++++| .+..++ .++..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            356777777777766653 5666777777777754 344443 35666777777777665

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=3.1e-07  Score=78.99  Aligned_cols=93  Identities=14%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             cCCCCccEEeecCCCCCC-CCCccCCCCccCceecccCcccCCCCC--cCCCCCCCcCeeeccCCCCccccCCCCCCCCC
Q 017094          280 CCTDTLHTLVIGDCPNFM-ALPGSLKDLEALETLAIRGCPKLSSLP--EDMHHLTTLKLLAIGGCPALSERCKPPTGEDW  356 (377)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  356 (377)
                      .-||++..+.+..|+.-+ ...+....+|.+.-|+|+.+ .+.++.  +.+..++.|+-|.+.+.|-+.....  ....+
T Consensus       196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~  272 (418)
T KOG2982|consen  196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRF  272 (418)
T ss_pred             hhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccC--CcceE
Confidence            456888888888775211 12333456677777777765 445443  4467889999999999886655533  33445


Q ss_pred             CCCCccceEE-eCCCccCCC
Q 017094          357 PKIAHITQIE-LDDEIIKSS  375 (377)
Q Consensus       357 ~~i~~~~~~~-~~~~~~~~~  375 (377)
                      .-|+++++++ .+|-.|.+.
T Consensus       273 llIaRL~~v~vLNGskIss~  292 (418)
T KOG2982|consen  273 LLIARLTKVQVLNGSKISSR  292 (418)
T ss_pred             EEEeeccceEEecCcccchh
Confidence            6689999997 457676653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.30  E-value=3.5e-06  Score=77.32  Aligned_cols=181  Identities=21%  Similarity=0.268  Sum_probs=108.3

Q ss_pred             hcCCCcccEEeccCccccccCchhhcccccccEeeecCcc-cccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccc
Q 017094          164 ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR  242 (377)
Q Consensus       164 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  242 (377)
                      +..++++..|++++| .+..+|.   -..+|+.|.+++|. ++..|..+  .++|+.|.+++|..+..+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            445788999999988 7788872   23469999998753 33444333  46899999998866665554      355


Q ss_pred             hhccccCC--CCccCCCccceEEecccccc--cccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcc
Q 017094          243 TLLIHSYD--DRKNTRPRLRRVFIKEITQL--LELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP  318 (377)
Q Consensus       243 ~L~l~~~~--~~~~~~~~L~~L~l~~~~~~--~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~  318 (377)
                      .|++..+.  .+...|++|+.|.+.++...  ..+|.    .-.++|++|++++|..+ .+|..+-  .+|+.|+++.+.
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~----~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDN----LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheecccccccccccccc----ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            55555432  34466778888888653311  11111    11257999999988754 3444332  588899887653


Q ss_pred             cCC-CCC-cCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEE
Q 017094          319 KLS-SLP-EDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIE  366 (377)
Q Consensus       319 ~~~-~~~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~  366 (377)
                      ... .++ ..+.  +++ .|++.+|-.+......+.+-.+...+..++.+
T Consensus       189 ~~sLeI~~~sLP--~nl-~L~f~n~lkL~~~~f~d~~i~~~~~~~~~~~~  235 (426)
T PRK15386        189 KTTWNISFEGFP--DGL-DIDLQNSVLLSPDVFKDKNITFQGNALDVALH  235 (426)
T ss_pred             cccccCcccccc--ccc-EechhhhcccCHHHhhcccccccCcccchhcc
Confidence            111 122 1111  455 78888886665544444554444444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.28  E-value=7.5e-07  Score=88.23  Aligned_cols=132  Identities=17%  Similarity=0.268  Sum_probs=86.8

Q ss_pred             CCCcEEEEEeccccccchh-hhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFS-SLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~  147 (377)
                      .++++|++.+.......++ +....+|.|++|.+++-.+.  .+.+.....++++|..||++++.++.+ ..++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            3788888877655443333 34456688998888885442  344566788888889999988888877 6778888888


Q ss_pred             eEeccCCCcccccC--hhhcCCCcccEEeccCccccccCchhh-------cccccccEeeecCcccc
Q 017094          148 YLDLSRNSKIKKLP--KSICELQSLQTLDLEGCLELEELPKDI-------RYLVILRVFALTTKQKS  205 (377)
Q Consensus       148 ~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~p~~l-------~~l~~L~~L~l~~~~~~  205 (377)
                      .|.+. |-.+....  ..+..+++|++||++....... +..+       ..+|+|+.||.+++.+.
T Consensus       199 ~L~mr-nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMR-NLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhcc-CCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchh
Confidence            88887 33333222  2366788888888887533222 2111       34667777777766544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.24  E-value=8e-06  Score=75.03  Aligned_cols=93  Identities=19%  Similarity=0.362  Sum_probs=63.1

Q ss_pred             hhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccE
Q 017094          117 FSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRV  196 (377)
Q Consensus       117 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  196 (377)
                      +..+.+++.|++++|.+..+|.   -..+|+.|.+++|..+..+|..+  .++|++|++++|..+..+|.      .|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            5567889999999998888872   23479999998888888777654  35889999998877766665      3556


Q ss_pred             eeecCcccccCcccCCC-CCCCCEEEccC
Q 017094          197 FALTTKQKSLQESGIRS-LGSLRCLTISG  224 (377)
Q Consensus       197 L~l~~~~~~~~~~~l~~-l~~L~~L~l~~  224 (377)
                      |++..+....    +.. .++|+.|.+.+
T Consensus       117 L~L~~n~~~~----L~~LPssLk~L~I~~  141 (426)
T PRK15386        117 LEIKGSATDS----IKNVPNGLTSLSINS  141 (426)
T ss_pred             EEeCCCCCcc----cccCcchHhheeccc
Confidence            6665443321    122 23466666643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.23  E-value=1.7e-06  Score=57.86  Aligned_cols=58  Identities=34%  Similarity=0.563  Sum_probs=31.6

Q ss_pred             CccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcc
Q 017094          144 KHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQ  203 (377)
Q Consensus       144 ~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~  203 (377)
                      ++|++|++++| .+..+|. ++..+++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            35666666654 4455543 4555666666666654 333333 345556666666665554

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.15  E-value=4.1e-06  Score=71.35  Aligned_cols=14  Identities=21%  Similarity=0.185  Sum_probs=8.4

Q ss_pred             CCccCceecccCcc
Q 017094          305 DLEALETLAIRGCP  318 (377)
Q Consensus       305 ~l~~L~~L~l~~~~  318 (377)
                      .+|-|..|.+.+|.
T Consensus       301 ~~p~L~~le~ngNr  314 (388)
T COG5238         301 AVPLLVDLERNGNR  314 (388)
T ss_pred             ccHHHHHHHHccCc
Confidence            45666666666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.14  E-value=2.8e-06  Score=84.31  Aligned_cols=153  Identities=23%  Similarity=0.268  Sum_probs=103.2

Q ss_pred             cCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc--cCCcCcCCCCccceEeccCCCcccccChhhcCCCcc
Q 017094           93 LGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL  170 (377)
Q Consensus        93 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L  170 (377)
                      -.+|+.|+++|... ....++...-.-+|.|+.|.+.+-.+.  .+......+++|..||+++ +.++.+ .+++.+++|
T Consensus       121 r~nL~~LdI~G~~~-~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSEL-FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccch-hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccH
Confidence            35888899988543 344444455566789999999887664  3445566788999999996 577777 568889999


Q ss_pred             cEEeccCccccccC--chhhcccccccEeeecCcccccCc-------ccCCCCCCCCEEEccCCCCchhhHHhc-ccCcc
Q 017094          171 QTLDLEGCLELEEL--PKDIRYLVILRVFALTTKQKSLQE-------SGIRSLGSLRCLTISGCRDLEHLFEEI-EQLSL  240 (377)
Q Consensus       171 ~~L~l~~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~  240 (377)
                      ++|.+.+ -.....  -.++.+|++|+.||+|.......+       ..-..+|.|+.|+.+++.....+...+ ..-++
T Consensus       198 q~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  198 QVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHhccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            9998864 233322  235778999999999975443322       222448899999999887666555443 34456


Q ss_pred             cchhccccC
Q 017094          241 LRTLLIHSY  249 (377)
Q Consensus       241 L~~L~l~~~  249 (377)
                      |+.+..-+|
T Consensus       277 L~~i~~~~~  285 (699)
T KOG3665|consen  277 LQQIAALDC  285 (699)
T ss_pred             Hhhhhhhhh
Confidence            666554433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.13  E-value=7.2e-07  Score=84.31  Aligned_cols=129  Identities=30%  Similarity=0.352  Sum_probs=70.7

Q ss_pred             cCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094          120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL  199 (377)
Q Consensus       120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  199 (377)
                      +..++.+++..+.+...-..+..+++|+.|++..| .+..+...+..+++|++|++++| .+..+. .+..++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence            34445555555555544444556666666666643 44444443555666666666664 444442 3455555666666


Q ss_pred             cCcccccCcccCCCCCCCCEEEccCCCCchhhH-HhcccCcccchhccccCCCCc
Q 017094          200 TTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF-EEIEQLSLLRTLLIHSYDDRK  253 (377)
Q Consensus       200 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~  253 (377)
                      ++|.+... ..+..++.|+.+++++|.....-. . +..+.+++.+.+.++....
T Consensus       148 ~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  148 SGNLISDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccCcchhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            66666655 345556666666666655433222 1 3455566666666655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.11  E-value=2.3e-07  Score=88.71  Aligned_cols=126  Identities=25%  Similarity=0.212  Sum_probs=74.9

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhh-cccccccEeeec
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDI-RYLVILRVFALT  200 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~  200 (377)
                      .|...+.++|.+..+-.++..++.|+.|++++|. +.... .+..+++|++|||++| .+..+|.-- ..+ +|..|++.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeec
Confidence            3555555666665555566667777777777663 33332 4666777777777775 445554311 122 37777777


Q ss_pred             CcccccCcccCCCCCCCCEEEccCCCCchh-hHHhcccCcccchhccccCCCC
Q 017094          201 TKQKSLQESGIRSLGSLRCLTISGCRDLEH-LFEEIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       201 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~  252 (377)
                      +|.++.. .++.++.+|+.|+++.|-..+. ...-+..+..|+.|.+.+|+..
T Consensus       241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7776655 4667777777777777543221 1112345566777777777643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=3e-06  Score=73.04  Aligned_cols=83  Identities=23%  Similarity=0.225  Sum_probs=35.8

Q ss_pred             hhccCcccEEEeCCCcccc---CCcCcCCCCccceEeccCCCc---ccccChhhcCCCcccEEeccCcccc-ccCchhhc
Q 017094          117 FSKSQFLRVLNLRESALEV---CPRKMGNLKHMRYLDLSRNSK---IKKLPKSICELQSLQTLDLEGCLEL-EELPKDIR  189 (377)
Q Consensus       117 ~~~~~~L~~L~L~~~~~~~---l~~~~~~l~~L~~L~l~~~~~---~~~l~~~~~~l~~L~~L~l~~~~~~-~~~p~~l~  189 (377)
                      -..+..++.+||.+|.++.   +...+.++|+|++|+++.|..   ++.+|   ...++|++|-+.+...- ......+.
T Consensus        67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhh
Confidence            3444555555555555442   122233455555555553311   11222   12345555555443211 11223344


Q ss_pred             ccccccEeeecCc
Q 017094          190 YLVILRVFALTTK  202 (377)
Q Consensus       190 ~l~~L~~L~l~~~  202 (377)
                      .+|.++.|+++.|
T Consensus       144 ~lP~vtelHmS~N  156 (418)
T KOG2982|consen  144 DLPKVTELHMSDN  156 (418)
T ss_pred             cchhhhhhhhccc
Confidence            5555666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=1.3e-06  Score=74.31  Aligned_cols=91  Identities=19%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             hhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCccc----c-------CCcCcCCCCccceEeccCCC
Q 017094           88 SLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALE----V-------CPRKMGNLKHMRYLDLSRNS  155 (377)
Q Consensus        88 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~----~-------l~~~~~~l~~L~~L~l~~~~  155 (377)
                      ..+..+..+..++++||.++. ....+...+.+-.+|++.+++.-...    .       +.+++.+|++|+..+++.|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            345557777888888887663 23334445666667777776653221    1       12345566777777777665


Q ss_pred             cccccCh----hhcCCCcccEEeccCc
Q 017094          156 KIKKLPK----SICELQSLQTLDLEGC  178 (377)
Q Consensus       156 ~~~~l~~----~~~~l~~L~~L~l~~~  178 (377)
                      .....|+    .+++-..|++|.+.+|
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecC
Confidence            4443332    3445566666666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.04  E-value=1.6e-06  Score=83.65  Aligned_cols=236  Identities=21%  Similarity=0.254  Sum_probs=122.6

Q ss_pred             HHHHHHHhhccCcccEEEeCCCc-ccc--CCcCcCCCCccceEeccCC-CcccccC----hhhcCCCcccEEeccCcccc
Q 017094          110 QSFVESCFSKSQFLRVLNLRESA-LEV--CPRKMGNLKHMRYLDLSRN-SKIKKLP----KSICELQSLQTLDLEGCLEL  181 (377)
Q Consensus       110 ~~~~~~~~~~~~~L~~L~L~~~~-~~~--l~~~~~~l~~L~~L~l~~~-~~~~~l~----~~~~~l~~L~~L~l~~~~~~  181 (377)
                      ..........+++|+.|.+.++. +..  +-.....+++|+.|+++++ ......+    .....+.+|+.|++++|..+
T Consensus       177 ~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i  256 (482)
T KOG1947|consen  177 DKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV  256 (482)
T ss_pred             HHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence            33344444556777777777664 332  3344556777777777652 2211111    22334577777777776543


Q ss_pred             ccC--chhhcccccccEeeecCcc-cccC--cccCCCCCCCCEEEccCCCCchh--hHHhcccCcccchhccccCCCCcc
Q 017094          182 EEL--PKDIRYLVILRVFALTTKQ-KSLQ--ESGIRSLGSLRCLTISGCRDLEH--LFEEIEQLSLLRTLLIHSYDDRKN  254 (377)
Q Consensus       182 ~~~--p~~l~~l~~L~~L~l~~~~-~~~~--~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~  254 (377)
                      ...  ......+++|+.|.+.+|. ++..  ......++.|++|++++|.....  +......+++|+.|.+.....   
T Consensus       257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---  333 (482)
T KOG1947|consen  257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---  333 (482)
T ss_pred             CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---
Confidence            322  1112337778887766665 3322  23345677788888887776422  333344566666665544432   


Q ss_pred             CCCccceEEeccccccc-ccchhhhhcCCCCccEEeecCCCCCCCCC--ccCCCCc--------------cCceecccCc
Q 017094          255 TRPRLRRVFIKEITQLL-ELPQWLLQCCTDTLHTLVIGDCPNFMALP--GSLKDLE--------------ALETLAIRGC  317 (377)
Q Consensus       255 ~~~~L~~L~l~~~~~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~~~l~--------------~L~~L~l~~~  317 (377)
                       ++.++.+.+.++.... +.........+++++.+.+..+. .....  ..+.+++              .++.|++..|
T Consensus       334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~  411 (482)
T KOG1947|consen  334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDC  411 (482)
T ss_pred             -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccC
Confidence             3344444444443332 11111111455555555555544 22111  1222333              3677788777


Q ss_pred             ccCCCCC-cCCCC-CCCcCeeeccCCCCccccCCC
Q 017094          318 PKLSSLP-EDMHH-LTTLKLLAIGGCPALSERCKP  350 (377)
Q Consensus       318 ~~~~~~~-~~l~~-l~~L~~L~l~~c~~l~~~~~~  350 (377)
                      ...+.-. ..... +.+++.+++.+|+.++.....
T Consensus       412 ~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~  446 (482)
T KOG1947|consen  412 RLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE  446 (482)
T ss_pred             ccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence            6555321 11111 667788888888877776544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.93  E-value=2.5e-06  Score=82.37  Aligned_cols=227  Identities=20%  Similarity=0.231  Sum_probs=133.9

Q ss_pred             hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCC-ccc-c----CCcCcCCCCccceEeccCCCccccc-C
Q 017094           89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRES-ALE-V----CPRKMGNLKHMRYLDLSRNSKIKKL-P  161 (377)
Q Consensus        89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~-~----l~~~~~~l~~L~~L~l~~~~~~~~l-~  161 (377)
                      ....+++|+.+.+.++.. .....+......+++|+.|+++++ ... .    .......+++|+.|+++++..++.. -
T Consensus       183 l~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  183 LLSSCPLLKRLSLSGCSK-ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             HHhhCchhhHhhhccccc-CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            344578888888887643 333335667888999999999873 211 1    1224456788999999987644421 1


Q ss_pred             hhhc-CCCcccEEeccCcccccc--CchhhcccccccEeeecCcccccC---cccCCCCCCCCEEEccCCC---Cchh--
Q 017094          162 KSIC-ELQSLQTLDLEGCLELEE--LPKDIRYLVILRVFALTTKQKSLQ---ESGIRSLGSLRCLTISGCR---DLEH--  230 (377)
Q Consensus       162 ~~~~-~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~---~~~~--  230 (377)
                      ..++ .+++|++|.+.+|..+..  +-.....+++|++|++++|.....   .....++++|+.|.+....   .++.  
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~  341 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLS  341 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence            1222 388999999887754322  334456788899999998765421   1223446666665544432   1211  


Q ss_pred             ------------hHHhcccCcccchhccccCCCCccCCCccceEEeccccccc-ccchhhhhcCCCCccEEeecCCCCCC
Q 017094          231 ------------LFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLL-ELPQWLLQCCTDTLHTLVIGDCPNFM  297 (377)
Q Consensus       231 ------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~  297 (377)
                                  ....+..++.++.+.+..+....    ....+.+.+|+.+. .+....  ..+..++.|+++.|....
T Consensus       342 l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~----~~~~~~l~gc~~l~~~l~~~~--~~~~~l~~L~l~~~~~~t  415 (482)
T KOG1947|consen  342 LSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISD----LGLELSLRGCPNLTESLELRL--CRSDSLRVLNLSDCRLVT  415 (482)
T ss_pred             HHHhhccCchhHhHHHHhcCCCcchhhhhhhhccC----cchHHHhcCCcccchHHHHHh--ccCCccceEecccCcccc
Confidence                        11223456666666666655221    11146677777663 222222  444458999999887543


Q ss_pred             CCC-ccCCC-CccCceecccCcccCCC
Q 017094          298 ALP-GSLKD-LEALETLAIRGCPKLSS  322 (377)
Q Consensus       298 ~l~-~~~~~-l~~L~~L~l~~~~~~~~  322 (377)
                      .-. ..... +.+++.+++.+|...+.
T Consensus       416 ~~~l~~~~~~~~~~~~l~~~~~~~~~~  442 (482)
T KOG1947|consen  416 DKGLRCLADSCSNLKDLDLSGCRVITL  442 (482)
T ss_pred             ccchHHHhhhhhccccCCccCcccccc
Confidence            321 11112 77788888888877663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=2.5e-05  Score=47.96  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCC
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRN  154 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~  154 (377)
                      +|++|++++|.++.+|+.++.|++|++|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            566666666666666555666666666666654

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.68  E-value=6.4e-06  Score=62.98  Aligned_cols=110  Identities=18%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             ceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcC-CCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094           96 LRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMG-NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD  174 (377)
Q Consensus        96 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  174 (377)
                      +-.++++.|...... .....+....+|+..+|++|.++.+|+.+. ..+.++.|++++ +.+..+|..++.++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~-davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIA-DAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHH-HHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence            334556665443222 233456666778888888888888877655 456788888885 47778888888888888888


Q ss_pred             ccCccccccCchhhcccccccEeeecCcccccCc
Q 017094          175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQE  208 (377)
Q Consensus       175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~  208 (377)
                      ++.| .+...|..+..+.++-.|+..++....++
T Consensus       107 l~~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  107 LRFN-PLNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cccC-ccccchHHHHHHHhHHHhcCCCCccccCc
Confidence            8875 56667777777777777777777666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=5.6e-05  Score=46.41  Aligned_cols=36  Identities=28%  Similarity=0.484  Sum_probs=13.9

Q ss_pred             cccEEeccCccccccCchhhcccccccEeeecCcccc
Q 017094          169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKS  205 (377)
Q Consensus       169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  205 (377)
                      +|++|++++| .+..+|..+++|++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCC
Confidence            3444444443 33334333444444444444444333

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.64  E-value=1.4e-06  Score=83.49  Aligned_cols=110  Identities=25%  Similarity=0.290  Sum_probs=82.3

Q ss_pred             HHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhh-cCCCcccEEeccCccccccCchhhccc
Q 017094          113 VESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQTLDLEGCLELEELPKDIRYL  191 (377)
Q Consensus       113 ~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~p~~l~~l  191 (377)
                      +...+.-++.|+.|+|+.|++...- .+..|++|+.||+++| .+..+|..- ..+ +|+.|.+++| .+..+ .++.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeeccc-HHHhh-hhHHhh
Confidence            3445666788999999999987664 7788899999999986 566666421 133 4999999876 55555 468899


Q ss_pred             ccccEeeecCcccccCc--ccCCCCCCCCEEEccCCCC
Q 017094          192 VILRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       192 ~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~  227 (377)
                      .+|+.|++++|-+....  ..+..+..|+.|++.||..
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            99999999998776542  3456677788889988864

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.23  E-value=0.00039  Score=56.95  Aligned_cols=101  Identities=21%  Similarity=0.258  Sum_probs=54.9

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhc-CCCcccEEeccCccccccCc--hhhcccccccEee
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSIC-ELQSLQTLDLEGCLELEELP--KDIRYLVILRVFA  198 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~  198 (377)
                      +...+||++|.+..++ .+..++.|++|.++.| .+..+.+.+. .+++|..|.+.+| .+..+.  .-+..||.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence            5566677777665442 4455667777777643 4454444443 3556777777665 333321  1234556666666


Q ss_pred             ecCcccccCc----ccCCCCCCCCEEEccCC
Q 017094          199 LTTKQKSLQE----SGIRSLGSLRCLTISGC  225 (377)
Q Consensus       199 l~~~~~~~~~----~~l~~l~~L~~L~l~~~  225 (377)
                      +-+|......    -.+..+|+|+.|+..+.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            6665544321    34455666666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.91  E-value=0.00016  Score=55.49  Aligned_cols=94  Identities=24%  Similarity=0.282  Sum_probs=72.5

Q ss_pred             hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC
Q 017094           89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ  168 (377)
Q Consensus        89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~  168 (377)
                      .+..-.+|..+++++|.+   .++.+.+-.+++.++.|++++|.+..+|..+..++.|+.|+++.| .+...|..+..+.
T Consensus        48 ~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~  123 (177)
T KOG4579|consen   48 MLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLI  123 (177)
T ss_pred             HHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHH
Confidence            445556777888888754   445556667778889999999999999999999999999999965 6677788888888


Q ss_pred             cccEEeccCccccccCchh
Q 017094          169 SLQTLDLEGCLELEELPKD  187 (377)
Q Consensus       169 ~L~~L~l~~~~~~~~~p~~  187 (377)
                      ++-.|+..++ -...+|.+
T Consensus       124 ~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  124 KLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             hHHHhcCCCC-ccccCcHH
Confidence            8888888775 34445544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.87  E-value=0.002  Score=52.95  Aligned_cols=123  Identities=25%  Similarity=0.298  Sum_probs=73.4

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhh-cccccccEeeecCc
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDI-RYLVILRVFALTTK  202 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~  202 (377)
                      +.++|.+.++..+...-.-+.....++++.| .+..++. +-.+++|.+|.+..| .+..+.+.+ ..+++|..|.+++|
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhhccccccccceeccccc-chhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCc
Confidence            4555665555433221112345667777754 4444443 556778888888765 444444444 44567888888887


Q ss_pred             ccccC--cccCCCCCCCCEEEccCCCCchh---hHHhcccCcccchhccccC
Q 017094          203 QKSLQ--ESGIRSLGSLRCLTISGCRDLEH---LFEEIEQLSLLRTLLIHSY  249 (377)
Q Consensus       203 ~~~~~--~~~l~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~  249 (377)
                      .+...  ...+..||.|+.|.+-+|+....   -...+..+|+|+.|++..-
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            76643  25677788888888777663221   1123556778888877654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.0014  Score=55.96  Aligned_cols=83  Identities=18%  Similarity=0.108  Sum_probs=45.4

Q ss_pred             CCCcccEEeccCc--cccccCchhhcccccccEeeecCcccccC--cccCCCCCCCCEEEccCCCCch---hhHHhcccC
Q 017094          166 ELQSLQTLDLEGC--LELEELPKDIRYLVILRVFALTTKQKSLQ--ESGIRSLGSLRCLTISGCRDLE---HLFEEIEQL  238 (377)
Q Consensus       166 ~l~~L~~L~l~~~--~~~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~---~~~~~l~~l  238 (377)
                      .+++|++|.++.|  .....++.-...+++|+++++++|++...  ...+..+.+|..|++.+|....   .--..+.-+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            4566777777665  23333444445557777777777766642  1445566667777777665332   111223345


Q ss_pred             cccchhcccc
Q 017094          239 SLLRTLLIHS  248 (377)
Q Consensus       239 ~~L~~L~l~~  248 (377)
                      ++|+.|+=.+
T Consensus       143 ~~L~~LD~~d  152 (260)
T KOG2739|consen  143 PSLKYLDGCD  152 (260)
T ss_pred             hhhccccccc
Confidence            5566555433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=0.00025  Score=61.00  Aligned_cols=97  Identities=20%  Similarity=0.210  Sum_probs=63.8

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC--cCcCCCCccc
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP--RKMGNLKHMR  147 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~~~~~l~~L~  147 (377)
                      +++.|.+.++.+.+.+   ...+|+.|++|.++-|....     ...+..|++|+.|.|..|.+..+-  ..+.++++|+
T Consensus        20 ~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIss-----L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISS-----LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HhhhhcccCCCccHHH---HHHhcccceeEEeecccccc-----chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            5666777777777655   56678888888888765432     134677788888888888776553  2456777888


Q ss_pred             eEeccCCCcccccCh-----hhcCCCcccEEe
Q 017094          148 YLDLSRNSKIKKLPK-----SICELQSLQTLD  174 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~-----~~~~l~~L~~L~  174 (377)
                      .|+|..|...+.-+.     .+.-+|+|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888776654443322     344567777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.46  E-value=0.0013  Score=56.14  Aligned_cols=102  Identities=22%  Similarity=0.194  Sum_probs=45.9

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCC--CcccccChhhcCCCcccEEeccCccc--cccCchhhcccccccEe
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRN--SKIKKLPKSICELQSLQTLDLEGCLE--LEELPKDIRYLVILRVF  197 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~~~--~~~~p~~l~~l~~L~~L  197 (377)
                      .|+.|++.++.++.+ ..+-.+++|+.|.++.|  .....++.....+++|++|++++|..  +.+++ .+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhh
Confidence            344444444443322 12334456666666644  22223333344456666666665521  11221 23445555555


Q ss_pred             eecCcccccCc----ccCCCCCCCCEEEccCC
Q 017094          198 ALTTKQKSLQE----SGIRSLGSLRCLTISGC  225 (377)
Q Consensus       198 ~l~~~~~~~~~----~~l~~l~~L~~L~l~~~  225 (377)
                      ++.+|..+...    ..+.-+++|+.|+-...
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            65555433221    23344556666654443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.00066  Score=58.44  Aligned_cols=81  Identities=20%  Similarity=0.259  Sum_probs=46.5

Q ss_pred             CcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch-hhHHhcccCcccchhcc
Q 017094          168 QSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLI  246 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l  246 (377)
                      .+.+.|+..||. +..+ .....|+.|+.|.++-|.++.. ..+..|++|++|.|..|.+.. .....+..+++|+.|.|
T Consensus        19 ~~vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCG-LDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCC-ccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            345566666653 3322 2345666777777777766655 456667777777766654322 12234556666777766


Q ss_pred             ccCCC
Q 017094          247 HSYDD  251 (377)
Q Consensus       247 ~~~~~  251 (377)
                      ..|+-
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            66553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.93  E-value=0.018  Score=44.47  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEecc
Q 017094           89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLS  152 (377)
Q Consensus        89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~  152 (377)
                      +|.++++|+.+.+... .   ...-...+..+.+|+.+.+.++ +..++ ..+..+++|+.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~~-~---~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT-I---KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECCC-e---eEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            3455555555554421 1   1111223444445555555442 32222 233444445555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.56  E-value=0.0088  Score=30.47  Aligned_cols=20  Identities=25%  Similarity=0.356  Sum_probs=11.5

Q ss_pred             cccEEEeCCCccccCCcCcC
Q 017094          122 FLRVLNLRESALEVCPRKMG  141 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~  141 (377)
                      +|++|++++|.++.+|..++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35666666666655555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.55  E-value=0.073  Score=41.02  Aligned_cols=102  Identities=10%  Similarity=0.245  Sum_probs=54.4

Q ss_pred             HhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCc-hhhcccc
Q 017094          116 CFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELP-KDIRYLV  192 (377)
Q Consensus       116 ~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~  192 (377)
                      .|..+.+|+.+.+.. .+..++ ..+..+++|+.+.+..  .+..++. ++..+++|+.+.+..  .+..++ ..+..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccc
Confidence            467778888888875 455443 4577888889888874  2555443 466677888888864  333333 3456688


Q ss_pred             cccEeeecCcccccC-cccCCCCCCCCEEEccC
Q 017094          193 ILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISG  224 (377)
Q Consensus       193 ~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~  224 (377)
                      +|+.+.+..+ +... ...+..+ +|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            8888888765 3322 2455665 788887764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.92  E-value=0.0099  Score=48.94  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=41.4

Q ss_pred             CCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCC
Q 017094          217 LRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF  296 (377)
Q Consensus       217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~  296 (377)
                      ++.++-+++.+..+-...+..++.++.|.+.+|....                  +.....+..-.++|+.|++++|..+
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d------------------D~~L~~l~~~~~~L~~L~lsgC~rI  164 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD------------------DWCLERLGGLAPSLQDLDLSGCPRI  164 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchh------------------hHHHHHhcccccchheeeccCCCee
Confidence            4556666655555555556666666666666655433                  2222222233455555555555544


Q ss_pred             CCC-CccCCCCccCceecccCc
Q 017094          297 MAL-PGSLKDLEALETLAIRGC  317 (377)
Q Consensus       297 ~~l-~~~~~~l~~L~~L~l~~~  317 (377)
                      +.- -.++..+++|+.|.+.+-
T Consensus       165 T~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  165 TDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             chhHHHHHHHhhhhHHHHhcCc
Confidence            332 223445555555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=0.0044  Score=50.98  Aligned_cols=87  Identities=18%  Similarity=0.293  Sum_probs=58.9

Q ss_pred             ccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cC-CCCccCceecccCcccCCCCC-cCCCCCCCcC
Q 017094          258 RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SL-KDLEALETLAIRGCPKLSSLP-EDMHHLTTLK  334 (377)
Q Consensus       258 ~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~-~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~  334 (377)
                      .++.++-+++.....--..+  ..++.++.|.+.+|..++..-- .+ +..++|+.|+|++|+.+++-. ..+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            34555555543222222333  5778888999999887665311 11 368899999999999988543 4567899999


Q ss_pred             eeeccCCCCccc
Q 017094          335 LLAIGGCPALSE  346 (377)
Q Consensus       335 ~L~l~~c~~l~~  346 (377)
                      .|.+.+.|.+..
T Consensus       180 ~L~l~~l~~v~~  191 (221)
T KOG3864|consen  180 RLHLYDLPYVAN  191 (221)
T ss_pred             HHHhcCchhhhc
Confidence            999998876554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.18  E-value=0.062  Score=25.34  Aligned_cols=15  Identities=33%  Similarity=0.406  Sum_probs=6.0

Q ss_pred             cccEEEeCCCccccC
Q 017094          122 FLRVLNLRESALEVC  136 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l  136 (377)
                      +|+.|++++|.+..+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555554433

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.15  E-value=0.055  Score=27.45  Aligned_cols=19  Identities=37%  Similarity=0.691  Sum_probs=9.7

Q ss_pred             cccEEeccCccccccCchhh
Q 017094          169 SLQTLDLEGCLELEELPKDI  188 (377)
Q Consensus       169 ~L~~L~l~~~~~~~~~p~~l  188 (377)
                      +|++|++++| .+..+|..+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSS-EESEEGTTT
T ss_pred             CccEEECCCC-cCEeCChhh
Confidence            3555666555 344555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.14  E-value=0.099  Score=27.73  Aligned_cols=18  Identities=22%  Similarity=0.652  Sum_probs=15.1

Q ss_pred             CCCcCeeeccCCCCcccc
Q 017094          330 LTTLKLLAIGGCPALSER  347 (377)
Q Consensus       330 l~~L~~L~l~~c~~l~~~  347 (377)
                      +++|++|++++|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            478899999999988875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.66  E-value=0.0058  Score=58.40  Aligned_cols=84  Identities=21%  Similarity=0.235  Sum_probs=37.1

Q ss_pred             CcEEEEEecccccc---chhhhhcccCCceEEEeecCCchh-hHHHHHHHhhcc-CcccEEEeCCCccc-----cCCcCc
Q 017094           71 VRHLSFAAANALRN---DFSSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKS-QFLRVLNLRESALE-----VCPRKM  140 (377)
Q Consensus        71 l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~-~~L~~L~L~~~~~~-----~l~~~~  140 (377)
                      +..+.+.++.+...   .+...+...+.|..|++++|..+. ....+...+... ..+++|++..|.+.     .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            44555555544332   123445555666666666665441 111122222222 34455555555443     122333


Q ss_pred             CCCCccceEeccCC
Q 017094          141 GNLKHMRYLDLSRN  154 (377)
Q Consensus       141 ~~l~~L~~L~l~~~  154 (377)
                      ....+++.++++.|
T Consensus       169 ~~~~~l~~l~l~~n  182 (478)
T KOG4308|consen  169 EKNEHLTELDLSLN  182 (478)
T ss_pred             hcccchhHHHHHhc
Confidence            33445555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.28  E-value=0.015  Score=55.56  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=18.3

Q ss_pred             ceEEEeecCCch-hhHHHHHHHhhccCcccEEEeCCCccc
Q 017094           96 LRTIFFSTDDEK-TSQSFVESCFSKSQFLRVLNLRESALE  134 (377)
Q Consensus        96 L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~  134 (377)
                      +..|.+.+|... .....+...+.-...|..|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            444444444333 223333444555555555555555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.12  E-value=0.04  Score=46.58  Aligned_cols=86  Identities=13%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCc
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS  169 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~  169 (377)
                      +......+.|+++.+..    ......++.+..|..|+++.+.+..+|..++....+..++.. ++..+..|.++++.++
T Consensus        38 i~~~kr~tvld~~s~r~----vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~-~n~~~~~p~s~~k~~~  112 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRL----VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASH-KNNHSQQPKSQKKEPH  112 (326)
T ss_pred             hhccceeeeehhhhhHH----HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhh-ccchhhCCccccccCC
Confidence            45567778888776532    233345667778888899988888888888888888888887 4578888888888999


Q ss_pred             ccEEeccCccc
Q 017094          170 LQTLDLEGCLE  180 (377)
Q Consensus       170 L~~L~l~~~~~  180 (377)
                      +++++..++..
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            99998887653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.00  E-value=0.58  Score=24.62  Aligned_cols=16  Identities=38%  Similarity=0.513  Sum_probs=7.9

Q ss_pred             cccEEEeCCCccccCC
Q 017094          122 FLRVLNLRESALEVCP  137 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~  137 (377)
                      +|+.|+|++|.+..+|
T Consensus         3 ~L~~L~L~~N~l~~lp   18 (26)
T smart00370        3 NLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCEEECCCCcCCcCC
Confidence            4455555555544444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.00  E-value=0.58  Score=24.62  Aligned_cols=16  Identities=38%  Similarity=0.513  Sum_probs=7.9

Q ss_pred             cccEEEeCCCccccCC
Q 017094          122 FLRVLNLRESALEVCP  137 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~  137 (377)
                      +|+.|+|++|.+..+|
T Consensus         3 ~L~~L~L~~N~l~~lp   18 (26)
T smart00369        3 NLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCEEECCCCcCCcCC
Confidence            4455555555544444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.64  E-value=0.072  Score=45.06  Aligned_cols=63  Identities=19%  Similarity=0.059  Sum_probs=31.3

Q ss_pred             hcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCC
Q 017094          164 ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       164 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~  227 (377)
                      +..++.|..|+++.+ .+..+|.+++....++++++..|.....|..++..+.++.++.-++..
T Consensus        61 ~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence            334444555555442 344445555555555555555555444445555555555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 258 RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIG------DCPNFMALPGSLKDLEALET 311
           RLR + I+   +L ELP+ L        H  ++       +     +LP S+ +L+ L++
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 312 LAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPP 351
           L IR  P LS+L   +HHL  L+ L + GC AL  R  PP
Sbjct: 211 LKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL--RNYPP 247

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (275), Expect = 2e-27
 Identities = 62/318 (19%), Positives = 107/318 (33%), Gaps = 36/318 (11%)

Query: 49  MHDLMHDLAL--LVNSDCQSIPKRVRHLS-FAAANALRNDFSSLLSYLGRLRTIFFSTDD 105
            H   H      L      ++      LS +        +                 T  
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 106 EKTSQSFVES-CFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI 164
            +  ++  +    +       L LR   L   P +   L H++++ +     + +LP ++
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTM 123

Query: 165 CELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT--TKQKSLQES--------GIRSL 214
            +   L+TL L     L  LP  I  L  LR  ++    +   L E           + L
Sbjct: 124 QQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 215 GSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTR-----------PRLRRVF 263
            +L+ L +     +  L   I  L  L++L I       N+            P+L  + 
Sbjct: 183 VNLQSLRLEWTG-IRSLPASIANLQNLKSLKIR------NSPLSALGPAIHHLPKLEELD 235

Query: 264 IKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSL 323
           ++  T L   P          L  L++ DC N + LP  +  L  LE L +RGC  LS L
Sbjct: 236 LRGCTALRNYPPIFGGRA--PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 324 PEDMHHLTTLKLLAIGGC 341
           P  +  L    ++ +   
Sbjct: 294 PSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 3e-27
 Identities = 52/224 (23%), Positives = 82/224 (36%), Gaps = 37/224 (16%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
           L+ + +  + L   P  M     +  L L+RN  ++ LP SI  L  L+ L +  C EL 
Sbjct: 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELT 164

Query: 183 ELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR 242
           ELP+ +                       + L +L+ L +     +  L   I  L  L+
Sbjct: 165 ELPEPLASTDAS--------------GEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLK 209

Query: 243 TLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGS 302
           +L I +                   + L  L   +       L  L +  C      P  
Sbjct: 210 SLKIRN-------------------SPLSALGPAIHHLPK--LEELDLRGCTALRNYPPI 248

Query: 303 LKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSE 346
                 L+ L ++ C  L +LP D+H LT L+ L + GC  LS 
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 29/206 (14%)

Query: 133 LEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLV 192
           +        +      L    ++ ++     + + Q     D                  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SN 56

Query: 193 ILRVFALTTKQ-KSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD 250
             ++   T +  K+  +     +      L +     L    ++  +LS L+ + I +  
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDA-- 113

Query: 251 DRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALE 310
                              L+ELP  + Q     L TL +       ALP S+  L  L 
Sbjct: 114 -----------------AGLMELPDTMQQFA--GLETLTLARN-PLRALPASIASLNRLR 153

Query: 311 TLAIRGCPKLSSLPEDMHHLTTLKLL 336
            L+IR CP+L+ LPE +         
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEH 179

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 123 LRVLNLRE-SALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLE- 180
           L+ L L++ S L   P  +  L  +  LDL     + +LP  I +L +   + +   L+ 
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

Query: 181 --LEELP 185
              +  P
Sbjct: 315 QLDQHRP 321

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 46/340 (13%), Positives = 98/340 (28%), Gaps = 50/340 (14%)

Query: 6   LQSHNKKEDLEDIGMRYLKELLSRSFFQDLT---FGMVGMETFYFKMHDLMHDLALLVNS 62
             +H++       G   L   +S      +      M         + DL+ D       
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413

Query: 63  DCQSIPKRVRHLSFAAANALRNDFSSL---LSYLGRLRTIFFSTDDEKTSQSFVESCFSK 119
                      L       L N  + +   +  L +L+ I+F+        S        
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA-------NSPFTYDNIA 466

Query: 120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL---- 175
             +    +      E       NLK +  ++L     + +LP  + +L  LQ+L++    
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 176 -----EGCLELEELPKDIRYLVILRVFALTTKQ-KSL-QESGIRSLGSLRCLTISGCRDL 228
                +   +   L  D      +++F +     +     + ++ +  L  L     + +
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-V 585

Query: 229 EHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTL 288
            HL E       L  L +       N              Q+ E+P+         +  L
Sbjct: 586 RHL-EAFGTNVKLTDLKLDY-----N--------------QIEEIPEDFCAFTDQ-VEGL 624

Query: 289 VIGDCPNFMALP--GSLKDLEALETLAIRGCPKLSSLPED 326
                     +P   + K +  + ++      K+ S   +
Sbjct: 625 GFSHN-KLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 22/152 (14%)

Query: 110 QSFVESCFSKSQFLRVLNLR--------ESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP 161
           Q F    F+    +  + L         E++L+       N   +  +DL  N K+  L 
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS 744

Query: 162 KSI--CELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT-------KQKSLQESGIR 212
                  L  L  +D+         P        L+ F +         +      +GI 
Sbjct: 745 DDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 213 SLGSLRCLTISGCRDLEHLFEEIEQLSLLRTL 244
           +  SL  L I     +  + E++     L  L
Sbjct: 804 TCPSLIQLQIGSND-IRKVDEKL--TPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 29/210 (13%), Positives = 69/210 (32%), Gaps = 19/210 (9%)

Query: 139 KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL-----EGCLELEELPKDIRYLVI 193
            + N   +  L L+      ++P +I +L  L+ L            L    +    +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 194 LRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK 253
            R   +    K +     + L     L  +  R+ E    + +    L+   I +  +R 
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 254 NTRP-------RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL 306
                      +L+ ++    +        +     ++ +     +         S  +L
Sbjct: 438 TFISKAIQRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYEN------EELSWSNL 490

Query: 307 EALETLAIRGCPKLSSLPEDMHHLTTLKLL 336
           + L  + +  CP ++ LP+ ++ L  L+ L
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 35/251 (13%), Positives = 80/251 (31%), Gaps = 43/251 (17%)

Query: 113 VESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICE-LQSLQ 171
             +   K   L +L+   + +       G    +  L L  N +I+++P+  C     ++
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVE 622

Query: 172 TLDLEGCLELEELPKD--IRYLVILRVFALTT-KQKSLQESGIRSLGSLRC-----LTIS 223
            L      +L+ +P     + + ++     +  K  S   +   S+   +      +T+S
Sbjct: 623 GLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 224 GCRDLEHL-FEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCT 282
               ++    E     S + T+++ +     N               +  +P+  L+   
Sbjct: 682 YNE-IQKFPTELFATGSPISTIILSN-----N--------------LMTSIPENSLKPKD 721

Query: 283 DT------LHTLVIGDCPNFMALPGSLK--DLEALETLAIRGCPKLSSLPEDMHHLTTLK 334
                   L T+ +       +L    +   L  L  + +      SS P    + + LK
Sbjct: 722 GNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLK 779

Query: 335 LLAIGGCPALS 345
              I       
Sbjct: 780 AFGIRHQRDAE 790

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 32/244 (13%), Positives = 66/244 (27%), Gaps = 65/244 (26%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRK--MGNLKHMRYLDLSRNSKIKKLPKSI------C 165
           E   + +  +  L    + L+  P      ++  M  +D S N KI    ++I       
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDY 670

Query: 166 ELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGC 225
           +  +  T+ L    E+++ P ++                        +   +  + +S  
Sbjct: 671 KGINASTVTLSYN-EIQKFPTEL----------------------FATGSPISTIILSNN 707

Query: 226 R-------DLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL 278
                    L+      +   LL T+ +       N              +L  L     
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRF-----N--------------KLTSLSDDFR 748

Query: 279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSS------LPEDMHHLTT 332
                 L  + +     F + P    +   L+   IR              P  +    +
Sbjct: 749 ATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 333 LKLL 336
           L  L
Sbjct: 808 LIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 36/263 (13%), Positives = 75/263 (28%), Gaps = 35/263 (13%)

Query: 115 SCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKL--PKSICELQSLQT 172
               +   L+VL+    +  V  R  G+ +    +   R  +I+       +   Q L  
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 173 LDL-----EGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRD 227
            DL         E++ + KD R  +        T + +     I+ L  L+ +  +    
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP- 459

Query: 228 LEHLFEEIEQLSLLRTLLIHSYDDRKNTR--PRLRRVFIKEITQLLELPQWLLQCCTDTL 285
             +    ++             ++  +      L  V +     + +LP +L       L
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PEL 517

Query: 286 HTL---------VIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMH--HLTTLK 334
            +L               ++  L         ++   +     L   P       +  L 
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLG 576

Query: 335 LL-----------AIGGCPALSE 346
           LL           A G    L++
Sbjct: 577 LLDCVHNKVRHLEAFGTNVKLTD 599

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 60/388 (15%), Positives = 121/388 (31%), Gaps = 100/388 (25%)

Query: 47  FKMHDLMHDL--ALLVNSDCQSIPKRVRHLSFAAANALRN-DFSSLL---SYLGRLRTIF 100
           ++  D++     A + N DC+ +    +       + L   +   ++     +     +F
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPK-------SILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 101 --FSTDDEKTSQSFVESCFSKS-QFL--------RVLNLRESALEVCPRKMGNLKH-MRY 148
               +  E+  Q FVE     + +FL        R  ++          ++ N       
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 149 LDLSRNSKIKKLPKSICELQSLQTLDLEG-------CLELEELPKDIRYLVILRVFALTT 201
            ++SR     KL +++ EL+  + + ++G        + L+          +      + 
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD----------VCL----SY 174

Query: 202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSL-----LRTLLIHSYDDRKNT- 255
           K +   +  I        L +  C   E + E +++L         +   HS + +    
Sbjct: 175 KVQCKMDFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 256 --RPRLRRVFIKEITQ--LLEL-----PQWL----LQCCTDTLHTLVI-GDCPNFMALPG 301
             +  LRR+   +  +  LL L      +      L C       L+          L  
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTTRFKQVTDFLSA 283

Query: 302 ------SLKDL-------EALETLA-IRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSER 347
                 SL          E    L     C +   LP ++    T     +        R
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVL---TTNPRRLSIIAESI-R 338

Query: 348 CKPPTGEDWPKIAHITQIELDDEIIKSS 375
               T ++W    H+   +L   II+SS
Sbjct: 339 DGLATWDNWK---HVNCDKL-TTIIESS 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 22/151 (14%)

Query: 111 SFVESCFSKSQFLRVLNLRE--------SALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK 162
            F +  FS    L  +NL          ++L+       N   +  +DL  N K+ KL  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD 505

Query: 163 SI--CELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-------SGIRS 213
                 L  L  +DL       + P        L+ F +  ++ +           GI  
Sbjct: 506 DFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 214 LGSLRCLTISGCRDLEHLFEEIEQLSLLRTL 244
             SL  L I     +  + E+I     +  L
Sbjct: 565 CPSLTQLQIGSND-IRKVNEKI--TPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 25/219 (11%), Positives = 60/219 (27%), Gaps = 39/219 (17%)

Query: 140 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEG----CLELEELPKDIRYLVILR 195
           + +   +  L L       ++P +I +L  L+ L L        E    PK I   +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 196 VFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY-DDRKN 254
                  +   Q++ +          +     +    ++       R  L  +      N
Sbjct: 137 QKQKM--RMHYQKTFVDYDPREDFSDLIK-DCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 255 TRPRLRRVFIKEITQLLELPQWLLQC-----------------CTDTLHTLVIGDCPNFM 297
                          +  + + +++                    +            + 
Sbjct: 194 --------------NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239

Query: 298 ALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLL 336
                  +L+ L  + +  CP L+ LP  +  L  ++L+
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 13/119 (10%)

Query: 137 PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRV 196
             K  NLK +  +++     + KLP  +  L  +Q +++          +       L  
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALAD 300

Query: 197 FALTTKQKSLQ-----------ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTL 244
             +  K + +            E+ ++ +  L  L     + LE           L +L
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 34/243 (13%), Positives = 83/243 (34%), Gaps = 64/243 (26%)

Query: 113 VESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICE-LQSLQ 171
           VE+   K + L +L    + LE      G+   +  L+L+ N +I ++P + C   + ++
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVE 380

Query: 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISG------- 224
            L      +L+ +P                          +S+  +  +  S        
Sbjct: 381 NLSFAHN-KLKYIPNIF---------------------DAKSVSVMSAIDFSYNEIGSVD 418

Query: 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDT 284
            ++ + L     +   + ++ + +     N              Q+ + P+ L    +  
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSN-----N--------------QISKFPKELFSTGS-P 458

Query: 285 LHTLVIGDC-------PNFMALPGSLKDLEALETLAIRGCPKLSSLPED-----MHHLTT 332
           L ++ +           +      + K+   L ++ +R   KL+ L +D     + +L  
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVG 517

Query: 333 LKL 335
           + L
Sbjct: 518 IDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 30/245 (12%), Positives = 69/245 (28%), Gaps = 65/245 (26%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRK--MGNLKHMRYLDLSRN-------SKIKKLPKSI 164
            +    ++ +  L+   + L+  P      ++  M  +D S N            L  + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 165 CELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISG 224
            +  ++ +++L    ++ + PK++                        +   L  + + G
Sbjct: 430 FKGINVSSINLSNN-QISKFPKEL----------------------FSTGSPLSSINLMG 466

Query: 225 CR-------DLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWL 277
                     L+   E  +   LL ++ +       N              +L +L    
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRF-----N--------------KLTKLSDDF 507

Query: 278 LQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS------SLPEDMHHLT 331
                  L  + +    +F   P    +   L+   IR              PE +    
Sbjct: 508 RATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 332 TLKLL 336
           +L  L
Sbjct: 567 SLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 33/247 (13%), Positives = 62/247 (25%), Gaps = 63/247 (25%)

Query: 117 FSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPK--SICELQSLQTL 173
           F     L  LNL  + +   P    G  + +  L  + N K+K +P       +  +  +
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAI 407

Query: 174 DLEG-------CLELEELPKDIRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGC 225
           D              + L       + +    L+  Q     +    +   L  + + G 
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 226 R-------DLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL 278
                    L+   E  +   LL ++ +       N              +L +L     
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRF-----N--------------KLTKLSD--- 505

Query: 279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAI 338
                          P              L  + +      S  P    + +TLK   I
Sbjct: 506 --------DFRATTLPY-------------LVGIDLSYN-SFSKFPTQPLNSSTLKGFGI 543

Query: 339 GGCPALS 345
                  
Sbjct: 544 RNQRDAQ 550

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 43/238 (18%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICEL--------------Q 168
           LR L +  + L   P     L  +          +  LP  +C+L               
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLPVLPP 141

Query: 169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL 228
            LQ L +    +L  LP     L  L       +  SL          L+ L++S  + L
Sbjct: 142 GLQELSVSDN-QLASLPALPSELCKLWA--YNNQLTSLPML----PSGLQELSVSDNQ-L 193

Query: 229 EHLFEEIEQLSLLRTLLIHSYDDRKNTRP----RLRRVFIKEITQLLELPQWLLQCCTDT 284
             L     +L  L        ++R  + P     L+ + +    +L  LP    +     
Sbjct: 194 ASLPTLPSELYKLWAY-----NNRLTSLPALPSGLKELIVSG-NRLTSLPVLPSE----- 242

Query: 285 LHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342
           L  L++       +LP        L +L++    +L+ LPE + HL++   + + G P
Sbjct: 243 LKELMVSGN-RLTSLPMLP---SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 48/214 (22%), Positives = 71/214 (33%), Gaps = 46/214 (21%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
             VLN+ ES L   P  +    H+  L +  N+ +  LP    EL++   L++ G  +L 
Sbjct: 42  NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPALPPELRT---LEVSGN-QLT 94

Query: 183 ELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR 242
            LP     L+ L +F+       L          L  L I G + L  L      L  L 
Sbjct: 95  SLPVLPPGLLELSIFSN--PLTHLPA----LPSGLCKLWIFGNQ-LTSLPVLPPGLQEL- 146

Query: 243 TLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGS 302
                      N              QL  LP    +     L  L   +     +LP  
Sbjct: 147 -------SVSDN--------------QLASLPALPSE-----LCKLWAYNN-QLTSLP-- 177

Query: 303 LKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLL 336
                 L+ L++    +L+SLP     L  L   
Sbjct: 178 -MLPSGLQELSVSDN-QLASLPTLPSELYKLWAY 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 20/153 (13%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
           L+ L +  + L   P     L     L + RN ++ +LP+S+  L S  T++LEG   L 
Sbjct: 243 LKELMVSGNRLTSLPMLPSGLLS---LSVYRN-QLTRLPESLIHLSSETTVNLEGN-PLS 297

Query: 183 ELPKDIRYLVIL-------------RVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE 229
           E        +                  +   + ++L  +    L   R    +      
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

Query: 230 HLFEE--IEQLSLLRTLLIHSYDDRKNTRPRLR 260
              +E   +  SL    L  + +  K+   + +
Sbjct: 358 MFGQEDNADAFSLFLDRLSETENFIKDAGFKAQ 390

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 40/186 (21%)

Query: 16  EDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLAL------LVNSDCQSIPK 69
            +     L+E +++S       G    ++F + +HDL  D         L +   + I +
Sbjct: 408 TEEVEDILQEFVNKSLLFCDRNG----KSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQ 463

Query: 70  RVRHLSFAAANALRNDFSSLLSYLGR----------LRTIFFSTDD-----EKTSQSFVE 114
             R+      +  + D     ++L            L  + FS D      E    + + 
Sbjct: 464 FQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLI 523

Query: 115 SCFSK-------------SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP 161
             F +               F   L+L    L   P    N+  +   +   +   ++  
Sbjct: 524 HEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQP--FPNIVQLGLCEPETSEVYQQAK 581

Query: 162 KSICEL 167
               + 
Sbjct: 582 LQAKQE 587

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 41/219 (18%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
           + VL + ++AL   P    +L++   LD   N ++  LP+      SL+ LD++   +L 
Sbjct: 82  ITVLEITQNALISLPELPASLEY---LDACDN-RLSTLPELPA---SLKHLDVDNN-QLT 133

Query: 183 ELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR 242
            LP+    L  +       +   L E       SL  L++   + L  L E  E L  L 
Sbjct: 134 MLPELPALLEYINADN--NQLTMLPE----LPTSLEVLSVRNNQ-LTFLPELPESLEAL- 185

Query: 243 TLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPN--FMALP 300
                           +          L  LP   ++    +  T +   C       +P
Sbjct: 186 ---------------DVST------NLLESLPAVPVR-NHHSEETEIFFRCRENRITHIP 223

Query: 301 GSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIG 339
            ++  L+   T+ +   P LSS   +     T +    G
Sbjct: 224 ENILSLDPTCTIILEDNP-LSSRIRESLSQQTAQPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 39/211 (18%), Positives = 72/211 (34%), Gaps = 46/211 (21%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
           L  L+  ++ L   P    +LKH   LD+  N ++  LP+       L+ ++ +   +L 
Sbjct: 102 LEYLDACDNRLSTLPELPASLKH---LDVDNN-QLTMLPELPA---LLEYINADNN-QLT 153

Query: 183 ELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR 242
            LP+    L +L V     +   L E       SL  L +S    LE L     +     
Sbjct: 154 MLPELPTSLEVLSV--RNNQLTFLPE----LPESLEALDVSTNL-LESLPAVPVRNHHSE 206

Query: 243 TLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGS 302
              I  +  R+N              ++  +P+ +L    D   T+++ D P        
Sbjct: 207 ETEIF-FRCREN--------------RITHIPENILSL--DPTCTIILEDNP-------- 241

Query: 303 LKDLEALETLAIRGCPKLSSLPEDMHHLTTL 333
                 L +       + ++ P+        
Sbjct: 242 ------LSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 39/234 (16%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMR----YLDLSRNSKIKKLPKSICELQSLQTLDLEG- 177
           L  L++  + LE  P       H      +     N +I  +P++I  L    T+ LE  
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240

Query: 178 ---------CLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL 228
                      +    P      +   +            +             S    +
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA-VTAWFPENKQSDVSQI 299

Query: 229 EHLFEEIEQLSLLRTLLIH-----SYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTD 283
            H FE  E  +     L       S  +    R ++    +++++   EL Q       D
Sbjct: 300 WHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAW-LEKLSASAELRQQSFAVAAD 358

Query: 284 TLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLA 337
              +        +  L  +L   +A E L       L SL  +M  L  L+ +A
Sbjct: 359 ATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIA 412

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 44/243 (18%), Positives = 81/243 (33%), Gaps = 38/243 (15%)

Query: 115 SCFSKSQFLRVL-NLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTL 173
           S + K +   +    R  A+ +       +     L L+R   +  LP ++     +  L
Sbjct: 31  SAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRL-NLSSLPDNLP--PQITVL 85

Query: 174 DLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFE 233
           ++     L  LP+    L  L       +  +L E       SL+ L +   + L  L E
Sbjct: 86  EITQN-ALISLPELPASLEYLDACDN--RLSTLPE----LPASLKHLDVDNNQ-LTMLPE 137

Query: 234 EIEQLSLLR------TLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT 287
               L  +       T+L             L  + ++   QL  LP+       ++L  
Sbjct: 138 LPALLEYINADNNQLTMLPEL-------PTSLEVLSVRN-NQLTFLPELP-----ESLEA 184

Query: 288 LVIGDCPNFMALPGSLKDLEALETLAIR---GCPKLSSLPEDMHHLTTLKLLAIGGCPAL 344
           L +       +LP         E   I       +++ +PE++  L     + +   P L
Sbjct: 185 LDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP-L 242

Query: 345 SER 347
           S R
Sbjct: 243 SSR 245

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 28/271 (10%), Positives = 73/271 (26%), Gaps = 52/271 (19%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLP----------- 161
            S    +  ++ L+L  + L             +  L+LS N  + +             
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTL 85

Query: 162 -------KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ-KSLQESGIRS 213
                  + +    S++TL       +  +          +   L   +   L++     
Sbjct: 86  DLNNNYVQELLVGPSIETLHAANN-NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGC 142

Query: 214 LGSLRCLTISGCRDLEHL--FEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLL 271
              ++ L +     ++ +   E       L  L              L+  FI ++   +
Sbjct: 143 RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHL-------------NLQYNFIYDVKGQV 188

Query: 272 ELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLT 331
              +         L TL +        +    +    +  +++R   KL  + + +    
Sbjct: 189 VFAK---------LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQ 237

Query: 332 TLKLLAIGGCPALSERCKPPTGEDWPKIAHI 362
            L+   + G                 ++  +
Sbjct: 238 NLEHFDLRGNG-FHCGTLRDFFSKNQRVQTV 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 40/235 (17%), Positives = 78/235 (33%), Gaps = 35/235 (14%)

Query: 117 FSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLE 176
              S FL+++++  ++L+  P    +L+    +    N ++++LP  +  L  L  +  +
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPPSLEF---IAAGNN-QLEELP-ELQNLPFLTAIYAD 203

Query: 177 GCLELEELPKDIRYLVILRVF--ALTT-----KQKSLQESGIR---------SLGSLRCL 220
               L++LP     L  +      L           L                  SL  L
Sbjct: 204 NN-SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 262

Query: 221 TISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQC 280
            +     L  L E  + L+ L  +  + +       P L  +      ++  L       
Sbjct: 263 NVRDNY-LTDLPELPQSLTFL-DVSENIFSGLSELPPNLYYLNASS-NEIRSLCDLP--- 316

Query: 281 CTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKL 335
              +L  L + +    + LP        LE L       L+ +PE   +L  L +
Sbjct: 317 --PSLEELNVSNN-KLIELPALPPR---LERLIASFN-HLAEVPELPQNLKQLHV 364

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 48/243 (19%), Positives = 77/243 (31%), Gaps = 64/243 (26%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
           L  +    + LE  P ++ NL  +  +    N  +K LP     L++L   D      L 
Sbjct: 217 LESIVAGNNILEELP-ELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNY----LT 270

Query: 183 ELPKDIRYLVILRVF-----ALTTKQKSLQE---------SGIRSLGSLRCLTISGCRDL 228
           +LP+  + L  L V       L+    +L           S      SL  L +S  + L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-L 329

Query: 229 EHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTL 288
             L     +L  L            N               L E+P+         L  L
Sbjct: 330 IELPALPPRLERLIA--------SFN--------------HLAEVPELP-----QNLKQL 362

Query: 289 VIGDCP--NFMALPGSLKDLEA-------------LETLAIRGCPKLSSLPEDMHHLTTL 333
            +   P   F  +P S++DL               L+ L +   P L   P+    +  L
Sbjct: 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVEDL 421

Query: 334 KLL 336
           ++ 
Sbjct: 422 RMN 424

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 45/240 (18%), Positives = 74/240 (30%), Gaps = 55/240 (22%)

Query: 122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLE- 180
           FL+      S L   P +  N+K       + +   +  P    E + +    L  CL+ 
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 181 -----------LEELPKDIRYLVILRVF--ALTT------KQKSLQESGIRS------LG 215
                      L  LP+   +L  L     +LT         KSL               
Sbjct: 72  QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 216 SLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQ 275
            L  L +S  + LE L  E++  S L+ + + +                     L +LP 
Sbjct: 132 LLEYLGVSNNQ-LEKL-PELQNSSFLKIIDVDN-------------------NSLKKLPD 170

Query: 276 WLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKL 335
                    L  +  G+      LP  L++L  L  +       L  LP+    L ++  
Sbjct: 171 LPPS-----LEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVA 222

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 6/132 (4%)

Query: 8   SHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSI 67
             N++E L+D     LK L  R            M    FK+  ++H     V  D Q+I
Sbjct: 419 CSNEEEQLDDEVADRLKRLSKRGALLS----GKRMPVLTFKIDHIIHMFLKHV-VDAQTI 473

Query: 68  PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTD-DEKTSQSFVESCFSKSQFLRVL 126
              +  L         N+ S    ++      F  +   E   ++  E+      F + +
Sbjct: 474 ANGISILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSASEMYPKTTEETVIRPEDFPKFM 533

Query: 127 NLRESALEVCPR 138
            L +   +    
Sbjct: 534 QLHQKFYDSLKN 545

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 50/241 (20%), Positives = 86/241 (35%), Gaps = 24/241 (9%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQT 172
            + F     L+ L+L  + L   P  +  L  ++ L LS N K + L + S     SL  
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTH 329

Query: 173 LDLEG-CLELEELPKDIRYLVILRVFALTT---KQKSLQESGIRSLGSLRCLTISGCRDL 228
           L ++G    LE     +  L  LR   L+    +        +R+L  L+ L +S     
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-P 388

Query: 229 EHLFEEI-EQLSLLRTL--------LIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQ 279
             L  E  ++   L  L        +  +    +N    L+ + +   + L    + L  
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL-HLLKVLNLSH-SLLDISSEQLFD 446

Query: 280 CCTDTLHTLVIGDCP---NFMALPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKL 335
                L  L +         +    SL+ L  LE L +  C  LSS+ +     L  +  
Sbjct: 447 GLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNH 504

Query: 336 L 336
           +
Sbjct: 505 V 505

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 10/177 (5%)

Query: 80  NALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRE---SALEVC 136
           N   N      S    L  +    + ++        C    + LR L+L        + C
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLE--LGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 137 PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGC-LELEELPKDIRYLVILR 195
             ++ NL H++ L+LS N  +    ++  E   L+ LDL    L++++     + L +L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 196 VFALT-TKQKSLQESGIRSLGSLRCLTISGCR---DLEHLFEEIEQLSLLRTLLIHS 248
           V  L+ +      E     L +L+ L + G             ++ L  L  L++  
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 38/275 (13%), Positives = 73/275 (26%), Gaps = 64/275 (23%)

Query: 123 LRVLNLRESAL-EVCPRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLE 180
              L    + L  +       L ++ +LDL+R  +I  +   +      L TL L     
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN-P 92

Query: 181 LEELPKDI-RYLVILRVFALTTKQ-KSLQESGIRSLGSLRCL-------------TISGC 225
           L  + +        L+          S+    + +  +L  L                  
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 226 RDLEHL--------------FEEIEQLSLL-------------------RTLLIHSYDDR 252
             L+ L                 ++Q + L                         ++   
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 253 KNTRPRLRRVFIKEITQLLEL-----------PQWLLQCCTDTLHTLVIGDCPNFMALPG 301
           +N     + +    I  L              P      C  ++ ++ +     F     
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 302 SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLL 336
           +      L+ L +     LS LP  +  L+TLK L
Sbjct: 273 TFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKL 306

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 48/248 (19%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI--CELQSLQTLDLEGCLE 180
              LNL  + +        +    + L+      +  + K +    +QSL     E  ++
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED-MD 239

Query: 181 LEELPKDI---RYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIE 236
            E++   +      + +    L      ++  +       L+ L ++    L  L   + 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV 298

Query: 237 QLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF 296
            LS L+ L++ +                    +   L Q         L  L I      
Sbjct: 299 GLSTLKKLVLSA-------------------NKFENLCQISASNFPS-LTHLSIKGNTKR 338

Query: 297 MAL-PGSLKDLEALETL---------------AIRGCPKLSSLPEDMHH--LTTLKLLAI 338
           + L  G L++LE L  L                +R    L SL  ++ +    +LK  A 
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL--NLSYNEPLSLKTEAF 396

Query: 339 GGCPALSE 346
             CP L  
Sbjct: 397 KECPQLEL 404

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 31/237 (13%)

Query: 110 QSFVESCFSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPK-SICEL 167
               +  F+    L  L+L  ++++          K++  LDLS N  +      +  +L
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQL 144

Query: 168 QSLQTLDLEGCLELEELPKD---IRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTIS 223
           ++LQ L L    +++ L  +   I     L+   L++ Q K        ++G L  L ++
Sbjct: 145 ENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 224 GCRDLEHLFEEI---EQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQC 280
             +    L E++      + +R L              L    +   +         L  
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNL-------------SLSNSQLSTTS-----NTTFLGL 245

Query: 281 CTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKLL 336
               L  L +      +    S   L  LE   +     +  L     H L  ++ L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYL 301

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 38/247 (15%), Positives = 74/247 (29%), Gaps = 42/247 (17%)

Query: 110 QSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM-----RYLDLSRNSKIKKLPKSI 164
                + F+    L+ L+L  S   +          +       L+L++N   K    + 
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 165 CELQSLQTLDLEGC-LELEELPKDIRYLVILRVFALT-TKQKSLQESGIRSLGSLRCLTI 222
             L  L+ LDL    +  E   ++ R L  +    L+  K   L  +    + SL+ L +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 223 SGCR--DLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQC 280
                 +++      + L  L  L + +                     +  +   +L+ 
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSN-------------------NNIANINDDMLEG 502

Query: 281 CTDTLHTL--------VIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPED----MH 328
               L  L         +    N       LK L  L  L +        +P +    + 
Sbjct: 503 LE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLF 560

Query: 329 HLTTLKL 335
            L  + L
Sbjct: 561 ELKIIDL 567

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 123 LRVLNLRESAL-EVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLEL 181
           L +L+L  + L  V       L  + Y  L  N+       S+  L +++ L+L+     
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 182 EEL---------PKDIRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCR 226
           + +             ++L  L    +       ++ +    L +L+ L++S   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 110 QSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICEL 167
           +    + F++   L  L++  + +  + P     L  ++ L+L  N ++ +L  K+    
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFC 96

Query: 168 QSLQTLDLEGCLELEELPKD-IRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGC 225
            +L  L L     ++++  +       L    L+     S +      L +L+ L +S  
Sbjct: 97  TNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 226 R--DLEHLFEEIEQLSLLRTLLIHS 248
           +   L+    +I   S L+ L + S
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSS 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 36/231 (15%), Positives = 69/231 (29%), Gaps = 33/231 (14%)

Query: 123 LRVLNLRESAL-EVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICE---LQSLQTLDLEGC 178
           L+ L L  + + E  P     +  +  L L+       L + +C      S++ L L   
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 179 LELEELPKDIRYLVILRVFALTT------KQKSLQESGIRSLGSLRCLTISGCRDLEHLF 232
            +L          + L+   LT           +       L  L    +     ++HLF
Sbjct: 233 -QLSTTSNTT--FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLF 288

Query: 233 EE-IEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIG 291
              +  L  +R L +     +++            +  L ++  +  Q     L  L + 
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSI----------SLASLPKIDDFSFQWLK-CLEHLNME 337

Query: 292 DCPNFMALPGSLKDLEALETL-------AIRGCPKLSSLPEDMHHLTTLKL 335
           D             L  L+ L       ++R     + +      L  L L
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 32/253 (12%), Positives = 77/253 (30%), Gaps = 38/253 (15%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTL 173
            +  +    L +LNL  + L      + +L  +R LDL+ N  +++L        S++TL
Sbjct: 51  AADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELL----VGPSIETL 104

Query: 174 DLEGCLELEELPKDIRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHL- 231
                  +  +          +   L   +   L++        ++ L +     ++ + 
Sbjct: 105 HAANN-NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVN 160

Query: 232 -FEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVI 290
             E       L  L              L+  FI ++   +   +         L TL +
Sbjct: 161 FAELAASSDTLEHL-------------NLQYNFIYDVKGQVVFAK---------LKTLDL 198

Query: 291 GDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKP 350
                   +    +    +  +++R   KL  + + +     L+   + G          
Sbjct: 199 SSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLR 255

Query: 351 PTGEDWPKIAHIT 363
                  ++  + 
Sbjct: 256 DFFSKNQRVQTVA 268

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 21/190 (11%), Positives = 57/190 (30%), Gaps = 17/190 (8%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
           L+ L+L  + L     +  +   + ++ L  N K+  + K++   Q+L+  DL G     
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN---- 247

Query: 183 ELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR 242
                     +   F+   + +++ +  ++ L        +      +     E L    
Sbjct: 248 ----GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 243 TLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGS 302
              + +   +++     +    + +    E               +          +   
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQ--------ARQREIDALKEQYRTVIDQV 355

Query: 303 LKDLEALETL 312
               +A  TL
Sbjct: 356 TLRKQAKITL 365

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 17/231 (7%)

Query: 123 LRVLNLRESAL-EVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLE 180
            R+LNL E+ +  +      +L+H+  L LSRN  I+ +   +   L +L TL+L     
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-R 123

Query: 181 LEELPKDI-RYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLFEEI-EQ 237
           L  +P     YL  L+   L     +S+       + SLR L +   + L ++ E   E 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 238 LSLLRTL-----LIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGD 292
           LS LR L      +    +      +L  + +     L  +     Q     L  L +  
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPL-IKLDELDLSG-NHLSAIRPGSFQGLM-HLQKLWMIQ 240

Query: 293 CPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKLLAIGGCP 342
               +    +  +L++L  + +     L+ LP D+   L  L+ + +   P
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 117 FSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQTLD 174
           F     L+ L LR + +E  P      +  +R LDL    ++  + +     L +L+ L+
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 175 LEGCLELEELPKDIRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLFE 233
           L  C  L E+P ++  L+ L    L+     +++    + L  L+ L +   + ++ +  
Sbjct: 192 LAMCN-LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIER 248

Query: 234 E-IEQLSLLRTLLIHS 248
              + L  L  + +  
Sbjct: 249 NAFDNLQSLVEINLAH 264

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 36/190 (18%), Positives = 70/190 (36%), Gaps = 11/190 (5%)

Query: 65  QSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLR 124
             IP     L   + N L++    +   L +L  +  S  +  + +         +  L+
Sbjct: 24  TGIPSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLS-SNGLSFKGCCSQSDFGTTSLK 81

Query: 125 VLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKS--ICELQSLQTLDLEGCLELE 182
            L+L  + +         L+ + +LD   +  +K++ +      L++L  LD+       
Sbjct: 82  YLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTR 139

Query: 183 ELPKDI-RYLVILRVFALT--TKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEI-EQL 238
                I   L  L V  +   + Q++        L +L  L +S C+ LE L       L
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSL 198

Query: 239 SLLRTLLIHS 248
           S L+ L +  
Sbjct: 199 SSLQVLNMSH 208

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 14/247 (5%)

Query: 8   SHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNSDCQSI 67
           ++      + I +      +S      +T   V   ++ F    L   +           
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL-ELVNCKFGQFPTLK 323

Query: 68  PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLN 127
            K ++ L+F + N   N FS     L  L  +  S  +  + +         +  L+ L+
Sbjct: 324 LKSLKRLTFTS-NKGGNAFS--EVDLPSLEFLDLS-RNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 128 LRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI--CELQSLQTLDLEGCLELEELP 185
           L  + +         L+ + +LD   +  +K++ +      L++L  LD+          
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF 437

Query: 186 KDI-RYLVILRVFALTT--KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEI-EQLSLL 241
             I   L  L V  +     Q++        L +L  L +S C+ LE L       LS L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSL 496

Query: 242 RTLLIHS 248
           + L + S
Sbjct: 497 QVLNMAS 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 39/243 (16%)

Query: 110 QSFVESCFSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSI-CEL 167
           +      F     L+VL+L    ++        +L H+  L L+ N  I+ L       L
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGL 99

Query: 168 QSLQTLDLEGCLELEELPKD-IRYLVILRVFALTTKQ-KSLQESGI-RSLGSLRCLTISG 224
            SLQ L       L  L    I +L  L+   +     +S +      +L +L  L +S 
Sbjct: 100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 225 CRDLEHL----FEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQC 280
            + ++ +       + Q+ LL   L  S                     +  +     + 
Sbjct: 159 NK-IQSIYCTDLRVLHQMPLLNLSLDLSL------------------NPMNFIQPGAFKE 199

Query: 281 CTDTLHTLVIGDCPNFMALP-GSLKDLEALETL-----AIRGCPKLSSLPED-MHHLTTL 333
               LH L + +  + + +    ++ L  LE         R    L    +  +  L  L
Sbjct: 200 I--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 334 KLL 336
            + 
Sbjct: 258 TIE 260

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 42/263 (15%), Positives = 74/263 (28%), Gaps = 49/263 (18%)

Query: 117 FSKSQFLRVLNLRESAL-EVCPRKMGNLKHMRY----LDLSRNSKIKKLPKSICELQSLQ 171
           FS    L  L+L  + +  +    +  L  M      LDLS N  +  +     +   L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLH 203

Query: 172 TLDLEGC-LELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEH 230
            L L      L  +   I+ L  L V  L       +     +L       + G  +L  
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRL----VLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 231 LFEEIEQLSLLRTLLIHSYDDRKNTRP-RLRRVFIKEITQLLELPQW------------L 277
               +  L      +I  ++   N     L  V I+ +        W             
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 278 LQCCTDTLHTLV-----IGDCPNFMALP-------------------GSLKDLEALETLA 313
                 +L  L       G+  + + LP                    S     +L+ L 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 314 IRGCPKLSSLPEDMHHLTTLKLL 336
           +     + ++  +   L  L+ L
Sbjct: 380 LSFN-GVITMSSNFLGLEQLEHL 401

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTL 173
              F K Q L  L +  + L         +  ++ LDLS N  +  + ++  +   L+ L
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENL 323

Query: 174 DLEGCLELEELPKDI 188
            L+    +  L    
Sbjct: 324 YLDHN-SIVTLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 31/246 (12%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQ 171
              F+ +  ++ L +  +A+   P  +  N+  +  L L RN  +  LP+ I      L 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 144

Query: 172 TLDLEGCLELEELPKDI-RYLVILRVFALTTKQ-KSLQESGIRSLGSL-----RCLTISG 224
           TL +     LE +  D  +    L+   L++ +   +  S I SL           T++ 
Sbjct: 145 TLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203

Query: 225 CRDLEHL--------------FEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQL 270
              +E L                E+  L L    L  +        P L  V +    +L
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY--PGLVEVDLSY-NEL 260

Query: 271 LELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHL 330
            ++           L  L I +    +AL    + +  L+ L +     L  +  +    
Sbjct: 261 EKIMYHPFVKMQR-LERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF 317

Query: 331 TTLKLL 336
             L+ L
Sbjct: 318 DRLENL 323

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 13/169 (7%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICE-LQSLQTLDLEGCLEL 181
           L +L L+ + L      + N   +  +DLS N +++K+       +Q L+ L +     L
Sbjct: 228 LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RL 284

Query: 182 EELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLL 241
             L    + +  L+V  L+       E        L  L +     +  L  ++     L
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTL--KLSTHHTL 341

Query: 242 RTLLIH----SYDDRKNTRPRLRRVFIKEITQLLELPQWLLQ--CCTDT 284
           + L +       +  +     + R  + +  Q  ++   L    CC ++
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES 390

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 35/219 (15%), Positives = 81/219 (36%), Gaps = 38/219 (17%)

Query: 123 LRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQTLDLEGCLE 180
            +++  + S +   P  +  + + +  L+L+   +I+++         ++Q L +     
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-A 104

Query: 181 LEELPKDI-RYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLFEEI-EQ 237
           +  LP  + + + +L V  L      SL      +   L  L++S    LE + ++  + 
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA 163

Query: 238 LSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM 297
            + L+ L + S                    +L  +   L+     +L    +    N +
Sbjct: 164 TTSLQNLQLSS-------------------NRLTHVDLSLIP----SLFHANVSY--NLL 198

Query: 298 ALPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKL 335
           +   +L    A+E L       ++ +   +   LT LKL
Sbjct: 199 S---TLAIPIAVEELDASHN-SINVVRGPVNVELTILKL 233

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 39/239 (16%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQ 171
              F     L VL L  +++          L  +  L+L  N  +  +P      L  L+
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLR 150

Query: 172 TLDLEGCLELEELPKDI-------RYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISG 224
            L L     +E +P            L +  +  L      + E     L +L+ L +  
Sbjct: 151 ELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE----YISEGAFEGLFNLKYLNLGM 205

Query: 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDT 284
           C  ++ +   +  L  L  L +       N                 E+        + +
Sbjct: 206 CN-IKDM-PNLTPLVGLEELEMSG-----N--------------HFPEIRPGSFHGLS-S 243

Query: 285 LHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKLLAIGGCP 342
           L  L + +    +    +   L +L  L +     LSSLP D+   L  L  L +   P
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 63/376 (16%), Positives = 121/376 (32%), Gaps = 59/376 (15%)

Query: 8   SHNK-----KEDLEDIGMRYLKEL-LSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVN 61
           S N+     + +LE +  + L    L+ +                    D    +    N
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV------------DWGKCMNPFRN 203

Query: 62  SDCQSIPKRVRHLSFAAANALRNDFSSL----LSYLGRLRTIFFSTDDEKTSQSFVESCF 117
              + +       +        N  S      L     +    F   + K       +  
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 118 SKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQTLDL 175
           ++S  +R L+L    +     ++   LK ++ L+L+ N KI K+       L +LQ L+L
Sbjct: 264 ARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNL 321

Query: 176 EGCLELEELPKDI-RYLVILRVFALT-TKQKSLQESGIRSLGSLRCL--------TISGC 225
              L L EL       L  +    L       +Q+   + L  L+ L        TI   
Sbjct: 322 SYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI 380

Query: 226 RDLEHLF------EEIEQLSLLRTLLIHSYDDRKNTR--------PRLRRVFIKEITQLL 271
             +  +F        + +++L   L+  S +  +N          P L+ + + +  +  
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFS 439

Query: 272 ELPQWLLQCCTDTLHTL-----VIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPED 326
                       +L  L     ++             + L  L+ L +     L+SLP  
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPG 498

Query: 327 M-HHLTTLKLLAIGGC 341
           +  HLT L+ L++   
Sbjct: 499 VFSHLTALRGLSLNSN 514

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 15/238 (6%)

Query: 110 QSFVESCFSKSQFLRVLNLRESALE---VCPRKMGNLKHMRYLDLSRNSKIKKLP--KSI 164
                  F     L  L L    L    +      NLK +  LDLS+N +I+ L    S 
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSF 144

Query: 165 CELQSLQTLDLEGCLELEELPKD----IRYLVILRVFALTTKQKSLQESGIRSLGSLRCL 220
            +L SL+++D     ++  + +     ++   +           S          +    
Sbjct: 145 GKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 221 TISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQC 280
            +    D+      ++        +  S          +          + +  Q     
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF-GFHNIKDPDQNTFAG 262

Query: 281 -CTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKLL 336
               ++  L +     F       + L+ L+ L +    K++ + ++  + L  L++L
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVL 319

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 37/227 (16%), Positives = 80/227 (35%), Gaps = 35/227 (15%)

Query: 117 FSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL 175
           F     +  ++L+++ + +   +    L+ ++ LDL  N        +I  + S+  + L
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-----ALTTIHFIPSIPDIFL 388

Query: 176 EGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR----DLEHL 231
            G  +L  LPK      ++ +     +   +    +  +  L+ L ++  R      +  
Sbjct: 389 SGN-KLVTLPKINLTANLIHLSENRLENLDIL-YFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 232 FEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIG 291
             E   L  L                 L    ++   +  EL   + +  +  L  L + 
Sbjct: 447 PSENPSLEQL----------------FLGENMLQLAWE-TELCWDVFEGLS-HLQVLYLN 488

Query: 292 DCPNFMALP-GSLKDLEALETLAIRGCPKLSSLPEDM--HHLTTLKL 335
                 +LP G    L AL  L++    +L+ L  +    +L  L +
Sbjct: 489 HN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDI 533

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLE 180
             +RVL+L    L      +  L  + +LDLS N +++ LP ++  L+ L+ L       
Sbjct: 441 ADVRVLHLAHKDLT-VLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-A 497

Query: 181 LEELPKDIRYLVILRVFALTTKQ-KSLQE-SGIRSLGSLRCLTISG---CRDLEHLFEEI 235
           LE +   +  L  L+   L   + +       + S   L  L + G   C++        
Sbjct: 498 LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556

Query: 236 EQLSLLRTLL 245
           E L  + ++L
Sbjct: 557 EMLPSVSSIL 566

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 38/290 (13%)

Query: 86  FSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKH 145
           F    + L        + D     +          + L  L L        P        
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKY---MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294

Query: 146 MRYLDLSRNSKI-KKLPKSICELQSLQTLDLEGCLE---LEELPKDIRYLVILRV----- 196
           +R LDL       +     I +  +L+ L+    +    LE L +  + L  LR+     
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354

Query: 197 -FALTTKQKSLQESGIRSLG----SLRCLTISGCR----DLEHLFEEIEQLSLLRTLLIH 247
              +  ++  + + G+ +L      L  + +         LE +   ++ L   R +L+ 
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414

Query: 248 SYDDRKNTR------------PRLRRVFIKEITQLL--ELPQWLLQCCTDTLHTLVIGDC 293
             +   +               +LRR         L      ++ Q     +  +++G  
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP-NVRWMLLGYV 473

Query: 294 PN-FMALPGSLKDLEALETLAIRGCPKL-SSLPEDMHHLTTLKLLAIGGC 341
                 L    +    L+ L +RGC     ++   +  L +L+ L + G 
Sbjct: 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 32/256 (12%)

Query: 110 QSFVESCFSKSQFLRVLNLRESALEVCPRKM--GNLKHMRYLDLSRNSKIKKLPK-SICE 166
            S   S F     L+ LNL  +  +         NL +++ L +       ++ +     
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 167 LQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISG 224
           L SL  L+++  L L       ++ +  +    L   +   L E     L S+R L +  
Sbjct: 147 LTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTD- 283
              L         +  + + +                  +K +  +LEL +     CT  
Sbjct: 206 TN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 284 ----------------------TLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS 321
                                 T+  L I     F  L      LE ++ + +    K+ 
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVF 323

Query: 322 SLPEDM-HHLTTLKLL 336
            +P     HL +L+ L
Sbjct: 324 LVPCSFSQHLKSLEFL 339

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 37/229 (16%), Positives = 70/229 (30%), Gaps = 17/229 (7%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSICE-LQSLQ 171
                    L+VL L+ S +         +L  + +LDLS N  +  L  S    L SL+
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLK 101

Query: 172 TLDLEGCLELEELPKD--IRYLVILRVFALTTKQ--KSLQESGIRSLGSLRCLTISGCRD 227
            L+L G    + L        L  L+   +   +    ++      L SL  L I     
Sbjct: 102 YLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS- 159

Query: 228 LEHLFEE-IEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLH 286
           L +   + ++ +  +  L +H      +    L  +F   ++ +  L   L         
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHL-----SESAFLLEIFADILSSVRYL--ELRDTNLARFQ 212

Query: 287 TLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKL 335
              +        +         L   +     KL     ++  +     
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 87  SSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM 146
           S+       L+T+  S  +   S           + L  L++  +     P      + M
Sbjct: 354 SACKGAWPSLQTLVLS-QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412

Query: 147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVIL 194
           R+L+LS    I+ +   I   Q+L+ LD+     L+     +  L  L
Sbjct: 413 RFLNLSST-GIRVVKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQEL 456

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 116 CFSKSQFLRVLNLRESAL-EVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD 174
             S    L VL LR   +  +       L  ++ L++S    +  +  +     +L +L 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 175 LEGCLELEELPKD-IRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLF 232
           +  C  L  +P   +R+LV LR   L+     +++ S +  L  L+ + + G + L  + 
Sbjct: 231 ITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVE 288

Query: 233 EEI-EQLSLLRTLLIHS 248
                 L+ LR L +  
Sbjct: 289 PYAFRGLNYLRVLNVSG 305

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 49/252 (19%), Positives = 93/252 (36%), Gaps = 45/252 (17%)

Query: 123 LRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNS-----------------------KIK 158
            R+L+L ++ ++   +    +  H+  L+L+ N                        ++K
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 159 KLPKSICE-LQSLQTLDLEGCLELEELPKDI-RYLVILRVFALTTKQ-KSLQESGIRSLG 215
            +P  +   L +L  LD+    ++  L   + + L  L+   +       +       L 
Sbjct: 94  LIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 216 SLRCLTISGCRDLEHL-FEEIEQLSLLRTL-----LIHSYDDRKNTR-PRLRRVFIKEIT 268
           SL  LT+  C  L  +  E +  L  L  L      I++  D    R  RL+ + I    
Sbjct: 153 SLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 269 QLLELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLEALETLAIRGCPKLSSLPED- 326
            L  +    L      L +L I  C N  A+P  +++ L  L  L +   P +S++    
Sbjct: 212 YLDTMTPNCLYGL--NLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM 267

Query: 327 ---MHHLTTLKL 335
              +  L  ++L
Sbjct: 268 LHELLRLQEIQL 279

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTL 173
              F K Q L  L +  + L         +  ++ LDLS N  +  + ++  +   L+ L
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENL 329

Query: 174 DLEGCLELEELPKDI 188
            L+    +  L    
Sbjct: 330 YLDHN-SIVTLKLST 343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 31/246 (12%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQ 171
              F+ +  ++ L +  +A+   P  +  N+  +  L L RN  +  LP+ I      L 
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 150

Query: 172 TLDLEGCLELEELPKDI-RYLVILRVFALTTKQ-KSLQESGIRSLGSL-----RCLTISG 224
           TL +     LE +  D  +    L+   L++ +   +  S I SL           T++ 
Sbjct: 151 TLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209

Query: 225 CRDLEHL--------------FEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQL 270
              +E L                E+  L L    L  +     N  P L  V +    +L
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNY-PGLVEVDLSY-NEL 266

Query: 271 LELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHL 330
            ++           L  L I +    +AL    + +  L+ L +     L  +  +    
Sbjct: 267 EKIMYHPFVKMQR-LERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF 323

Query: 331 TTLKLL 336
             L+ L
Sbjct: 324 DRLENL 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 15/229 (6%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICE-LQSLQTLDLEGCLEL 181
           L +L L+ + L      + N   +  +DLS N +++K+       +Q L+ L +     L
Sbjct: 234 LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RL 290

Query: 182 EELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLL 241
             L    + +  L+V  L+       E        L  L +     +  L  ++     L
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTL--KLSTHHTL 347

Query: 242 RTLLIH----SYDDRKNTRPRLRRVFIKEITQLLELPQWLLQ--CCTDTLHTLVIGDCPN 295
           + L +       +  +     + R  + +  Q  ++   L    CC ++    +  D   
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYL--DRLL 405

Query: 296 FMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL 344
                 S+ +              ++S+    H++T    + + G   L
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQL 454

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 70/264 (26%)

Query: 115 SCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD 174
           S       LR L L E  +      + NL  M  L+L  N  +      +  +  L  L 
Sbjct: 104 SALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLT 161

Query: 175 LEGCLELEELPKDIRYLVILRVFALTTKQ----------KSLQE--------SGIRSLGS 216
           +    +++++   I  L  L   +L   Q           SL          + I  + +
Sbjct: 162 VTES-KVKDVT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 217 LRCLT--------------ISGCRDLEHL---------FEEIEQLSLLRTLLIHSYDDRK 253
           +  L               ++    L  L            ++ L+ L+ L + S     
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS----- 274

Query: 254 NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLA 313
           N         I +I+ L  L Q         L++L + +          +  L  L TL 
Sbjct: 275 N--------QISDISVLNNLSQ---------LNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 314 IRGCPKLSSLP--EDMHHLTTLKL 335
           +     ++ +     +  + +   
Sbjct: 318 LSQNH-ITDIRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 36/200 (18%), Positives = 76/200 (38%), Gaps = 34/200 (17%)

Query: 142 NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT- 200
           +L       L +   +  +  +  EL+S+  L + G  ++  +   I YL  L    L  
Sbjct: 20  DLAEGIRAVLQKA-SVTDVV-TQEELESITKLVVAGE-KVASIQ-GIEYLTNLEYLNLNG 75

Query: 201 TKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLR 260
            +   +  S + +L  L  L I   + +  +   ++ L+ LR L              L 
Sbjct: 76  NQITDI--SPLSNLVKLTNLYIGTNK-ITDI-SALQNLTNLREL-------------YLN 118

Query: 261 RVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL 320
              I +I+ L  L +         +++L +G   + ++    L ++  L  L +    K+
Sbjct: 119 EDNISDISPLANLTK---------MYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTES-KV 167

Query: 321 SSLPEDMHHLTTLKLLAIGG 340
             +   + +LT L  L++  
Sbjct: 168 KDVTP-IANLTDLYSLSLNY 186

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 53/239 (22%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL------- 175
           L  +N   + L      + NL  +  + ++ N +I  +   +  L +L  L L       
Sbjct: 70  LTQINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTLFNNQITD 126

Query: 176 ----EGCLELEEL---------PKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTI 222
               +    L  L            +  L  L+  +   +   L    + +L +L  L I
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL--KPLANLTTLERLDI 184

Query: 223 SGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCT 282
           S  + +  +   + +L+ L +L+  +     N         I +IT L  L         
Sbjct: 185 SSNK-VSDI-SVLAKLTNLESLIATN-----NQ--------ISDITPLGILTN------- 222

Query: 283 DTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGC 341
             L  L +    N +   G+L  L  L  L +    ++S+L   +  LT L  L +G  
Sbjct: 223 --LDELSLNG--NQLKDIGTLASLTNLTDLDLANN-QISNLA-PLSGLTKLTELKLGAN 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 37/221 (16%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
           L  L L  + +      + NL ++  L+LS N  I  +  ++  L SLQ L     +   
Sbjct: 114 LTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGNQV--- 167

Query: 183 ELPKDIRYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLL 241
              K +  L  L    +++ +   +  S +  L +L  L  +  + +  +   +  L+ L
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ-ISDI-TPLGILTNL 223

Query: 242 RTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG 301
             L ++      N         +K+I  L  L           L  L + +      L  
Sbjct: 224 DELSLNG-----N--------QLKDIGTLASLTN---------LTDLDLANN-QISNLAP 260

Query: 302 SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP 342
            L  L  L  L +    ++S++   +  LT L  L +    
Sbjct: 261 -LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQ 298

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 23/231 (9%)

Query: 117 FSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSIC--ELQSLQTL 173
           FS    L  L+L  + L          L  + +L+L  N   K L ++     L  LQ L
Sbjct: 96  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQIL 154

Query: 174 DLEGCLELEELPKDI-RYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISGCRDLEHL 231
            +       ++ +     L  L    +     +S +   ++S+ ++  L +   +    L
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILL 213

Query: 232 FEEI-EQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVI 290
            E   +  S +  L +   D        L       + +        +            
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE--------- 264

Query: 291 GDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKLLAIGG 340
               +   +   L  +  L  L      +L S+P+ +   LT+L+ + +  
Sbjct: 265 ----SLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 115 SCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTL 173
              S    L  L+L  + L    P  +G+L  +R L L  N    ++P+ +  +++L+TL
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 174 DLEGCLELE-ELPKDIRYLVILRVFALTTKQKSLQE--------SGIRSLGSLRCLTISG 224
            L+    L  E+P  +     L          SL            I  L +L  L +S 
Sbjct: 472 ILDFND-LTGEIPSGLSNCTNLNWI-------SLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 225 CRDLEHLFEEIEQLSLLRTLLIHS 248
                ++  E+     L  L +++
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 94  GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSR 153
            ++ +I  S+       S V S       L  L L  S +            +  LDLSR
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 154 NSKIKKLP--KSICELQSLQTLDLEGC 178
           NS    +    S+     L+ L++   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSN 136

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 137 PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL 175
           P+++G++ ++  L+L  N     +P  + +L+ L  LDL
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 137 PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE-ELPKDIRYLVILR 195
           P  + N   +  L LS N     +P S+  L  L+ L L   + LE E+P+++ Y+  L 
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVKTLE 469

Query: 196 VFAL 199
              L
Sbjct: 470 TLIL 473

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 40/199 (20%)

Query: 142 NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT- 200
                   +L + S +     +  EL S+  +      +++ + + I+YL  +    L  
Sbjct: 19  AFAETIKDNLKKKS-VTDAV-TQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNG 74

Query: 201 TKQKSLQESGIRSLGSLRCLTISGCR--DLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPR 258
            K   +    + +L +L  L +   +  DL  L    + L  L++L +       N    
Sbjct: 75  NKLTDI--KPLTNLKNLGWLFLDENKIKDLSSL----KDLKKLKSLSLEH-----N---- 119

Query: 259 LRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP 318
                I +I  L+ LPQ         L +L +G+  N +     L  L  L+TL++    
Sbjct: 120 ----GISDINGLVHLPQ---------LESLYLGN--NKITDITVLSRLTKLDTLSLEDN- 163

Query: 319 KLSSLP--EDMHHLTTLKL 335
           ++S +     +  L  L L
Sbjct: 164 QISDIVPLAGLTKLQNLYL 182

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 141 GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT 200
            NLK++ +L L  N KIK L  S+ +L+ L++L LE    + ++   + +L  L    L 
Sbjct: 84  TNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLG 139

Query: 201 TKQ-KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRL 259
             +   +  + +  L  L  L++   + +  +   +  L+ L+ L +      KN     
Sbjct: 140 NNKITDI--TVLSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQNLYL-----SKN----- 185

Query: 260 RRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETL 312
               I ++  L  L           L  L +              +L    T+
Sbjct: 186 ---HISDLRALAGLKN---------LDVLELFSQECLNKPINHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 37/200 (18%)

Query: 140 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL 199
           +  L ++  L L+ N K+  + K +  L++L  L L+   ++++L   ++ L  L+  +L
Sbjct: 61  IQYLPNVTKLFLNGN-KLTDI-KPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116

Query: 200 TTKQ-KSLQESGIRSLGSLRCLTISGCR--DLEHLFEEIEQLSLLRTLLIHSYDDRKNTR 256
                  +  +G+  L  L  L +   +  D+  L     +L+ L TL            
Sbjct: 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDITVL----SRLTKLDTL------------ 158

Query: 257 PRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRG 316
             L    I +I  L  L +         L  L +    N ++   +L  L+ L+ L +  
Sbjct: 159 -SLEDNQISDIVPLAGLTK---------LQNLYLSK--NHISDLRALAGLKNLDVLELFS 206

Query: 317 CPKLSSLPEDMHHLTTLKLL 336
              L+       +L     +
Sbjct: 207 QECLNKPINHQSNLVVPNTV 226

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 51/225 (22%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK--SICELQSLQTLDLEGCLE 180
           LR L+L  +   +       L+ +++LD   +  +K++ +  +   L+ L  LD+     
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYT-N 435

Query: 181 LEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEI-EQLS 239
            +     I                         L SL  L ++G    ++    +    +
Sbjct: 436 TKIDFDGI----------------------FLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 240 LLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL 299
            L  L +                      QL ++   +       L  L +    N + L
Sbjct: 474 NLTFLDLSK-------------------CQLEQISWGVFDTLHR-LQLLNMSHN-NLLFL 512

Query: 300 P-GSLKDLEALETLAIRGCPKLSSLPED-MHHLTTLKLLAIGGCP 342
                  L +L TL      ++ +      H   +L    +    
Sbjct: 513 DSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 117 FSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSI-CELQSLQTLD 174
           F   + L +L L  + L          L  +  LDLS N++++ +  +    L  L TL 
Sbjct: 52  FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 175 LEGCLELEELPKDI-RYLVILRVFALTTKQ-KSLQESGIRSLGSLRCLTISG 224
           L+ C  L+EL   + R L  L+   L     ++L +   R LG+L  L + G
Sbjct: 112 LDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 49/233 (21%)

Query: 117 FSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL 175
           F   + L  L L  + +          L  +  L LS+N ++K+LP+ +   ++LQ L +
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--PKTLQELRV 128

Query: 176 EGCLELEELPKDI-RYLVILRVFALTTKQKSLQESGI-----RSLGSLRCLTISGCRDLE 229
               E+ ++ K +   L  + V  L T    L+ SGI     + +  L  + I+    + 
Sbjct: 129 HEN-EITKVRKSVFNGLNQMIVVELGTNP--LKSSGIENGAFQGMKKLSYIRIADTN-IT 184

Query: 230 H----LFEEIEQLSLLRTLL--IHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTD 283
                L   + +L L    +  + +               +K +  L +L   L      
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAAS-------------LKGLNNLAKL--GLSFNSIS 229

Query: 284 TLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLL 336
            +               GSL +   L  L +    KL  +P  +     ++++
Sbjct: 230 AVD-------------NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVV 268

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 5/145 (3%)

Query: 108 TSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI-CE 166
           + +         +  L+ L+L  + +         L+ + +LD   ++  +    S+   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 167 LQSLQTLDLEGCLELEELPKDIRYLVILRVFALT--TKQKSLQESGIRSLGSLRCLTISG 224
           L++L  LD+               L  L V  +   + Q++        L +L  L +S 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 225 CRDLEHLFEE-IEQLSLLRTLLIHS 248
           C+ LE L       LS L+ L +  
Sbjct: 480 CQ-LEQLSPTAFNSLSSLQVLNMSH 503

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 115 SCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTL 173
                S    +   R+ AL+     +   +++  L +     ++ L    +  L  L+ L
Sbjct: 6   CPHGSSG---LRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 174 DLEGCLELEELPKDI-RYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISG 224
            +     L  +  D   +   L    L+               SL+ L +SG
Sbjct: 62  TIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 141 GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT 200
             L ++  L +           ++  L SL  LD+      + +   I  L  +    L+
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 201 TKQKSLQESGIRSLGSLRCLTISGCR--DLEHLFEEIEQLSLLRTLLIHS 248
                     +++L  L+ L I      D   +    E    L  L   S
Sbjct: 145 YNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI----EDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 39/205 (19%)

Query: 120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCL 179
           S F   LN               +  + Y+ L+    +  L   I    +++ L +    
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNI- 76

Query: 180 ELEELPKDIRYLVILRVFALT-TKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQL 238
                   I  L  L    +      S +   +  L SL  L IS     + +  +I  L
Sbjct: 77  HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 239 SLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA 298
             + ++ +       N         I +I  L  LP+         L +L I        
Sbjct: 136 PKVNSIDLSY-----NGA-------ITDIMPLKTLPE---------LKSLNIQFD----- 169

Query: 299 LPGSLKDLEALETLAIRGCPKLSSL 323
               + D   +E       PKL+ L
Sbjct: 170 ---GVHDYRGIEDF-----PKLNQL 186

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 114 ESCFSKSQFLRVLNLRESALEVCPRKM-GNLKHMRYLDLSRNSKIKKLPKSICE-LQSLQ 171
           E   ++   L  L L  + L     +    + ++RYLDLS N  +  L + +   LQ+L+
Sbjct: 57  EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115

Query: 172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHL 231
            L L     +  + ++         F                +  L+ L +S  + +   
Sbjct: 116 VLLLYNN-HIVVVDRN--------AF--------------EDMAQLQKLYLSQNQ-ISRF 151

Query: 232 ----FEEIEQLSLLRTLLIHS 248
                ++  +L  L  L + S
Sbjct: 152 PVELIKDGNKLPKLMLLDLSS 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.52
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.5
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.25
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.91
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.45
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.02
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	88.28
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	81.15

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=6.5e-27  Score=236.34  Aligned_cols=245  Identities=18%  Similarity=0.171  Sum_probs=176.0

Q ss_pred             cCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094           93 LGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ  171 (377)
Q Consensus        93 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  171 (377)
                      +++|+.|++++|...   ..++..+..+++|++|++++|.+. .+|..++.+++|++|++++|.....+|..+..+++|+
T Consensus       393 ~~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          393 KNTLQELYLQNNGFT---GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             TCCCCEEECCSSEEE---EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             cCCccEEECCCCccc---cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence            445555555554332   123345666777777777777765 5566677777777777776655556676677777777


Q ss_pred             EEeccCccccccCchhhcccccccEeeecCcccc-cCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094          172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKS-LQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      +|++++|...+.+|..+..+++|++|++++|.+. ..|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|.
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            7777776555566777777777777777777766 345566777777777777777666666677777777777776664


Q ss_pred             CCc----------------------------------------------------------------------------c
Q 017094          251 DRK----------------------------------------------------------------------------N  254 (377)
Q Consensus       251 ~~~----------------------------------------------------------------------------~  254 (377)
                      ...                                                                            .
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            321                                                                            1


Q ss_pred             CCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcC
Q 017094          255 TRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLK  334 (377)
Q Consensus       255 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  334 (377)
                      ..++|+.|+++++.....+|..+  ..+++|+.|++++|...+.+|..++.+++|++|++++|.....+|..+..+++|+
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             ccccccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            12468888998887777888888  8889999999999887778999999999999999999877778888888899999


Q ss_pred             eeeccCCC
Q 017094          335 LLAIGGCP  342 (377)
Q Consensus       335 ~L~l~~c~  342 (377)
                      +|++++|+
T Consensus       708 ~L~ls~N~  715 (768)
T 3rgz_A          708 EIDLSNNN  715 (768)
T ss_dssp             EEECCSSE
T ss_pred             EEECcCCc
Confidence            99887763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=2.2e-26  Score=218.91  Aligned_cols=297  Identities=14%  Similarity=0.064  Sum_probs=206.9

Q ss_pred             CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCc
Q 017094           67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKH  145 (377)
Q Consensus        67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~  145 (377)
                      .++++++|++.++.+.... +..+..+++|++|++++|...  ....+..+..+++|++|++++|.+..+ |..++.+++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             CCTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CCCccCEEEecCCccCcCC-hhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            5578999999998877642 567899999999999988542  122234588899999999999998865 778999999


Q ss_pred             cceEeccCCCcccccChh--hcCCCcccEEeccCccccccCchh-hcccccccEeeecCcccccCc-ccCC---------
Q 017094          146 MRYLDLSRNSKIKKLPKS--ICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFALTTKQKSLQE-SGIR---------  212 (377)
Q Consensus       146 L~~L~l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~~~-~~l~---------  212 (377)
                      |++|++++|......|..  +..+++|++|++++|......|.. +..+++|++|++++|.+.... ..+.         
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            999999987544444444  888999999999998554444655 789999999999999877542 2222         


Q ss_pred             -------------------------CCCCCCEEEccCCCCchhhHHhcccC-----------------------------
Q 017094          213 -------------------------SLGSLRCLTISGCRDLEHLFEEIEQL-----------------------------  238 (377)
Q Consensus       213 -------------------------~l~~L~~L~l~~~~~~~~~~~~l~~l-----------------------------  238 (377)
                                               .+++|+.|++++|......+..+...                             
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  264 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP  264 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred             cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence                                     34678889998887766555544322                             


Q ss_pred             ----------cccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCcc
Q 017094          239 ----------SLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGS  302 (377)
Q Consensus       239 ----------~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~  302 (377)
                                ++|+.|++++|....      ...++|++|+++++......|..+  ..+++|++|++++|......+..
T Consensus       265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGGG
T ss_pred             cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCccCCcChhH
Confidence                      345555555554332      223467777777665443334444  56677777777776544444566


Q ss_pred             CCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          303 LKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       303 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      +..+++|++|++++|......|..+..+++|++|++++|. ++..+..    .+..+..++.+.+.++++.
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDG----IFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTT----TTTTCTTCCEEECCSSCBC
T ss_pred             hcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHh----HhccCCcccEEEccCCCcc
Confidence            6777778888887775444446667777888888887763 3333222    2345677777778777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.6e-26  Score=219.77  Aligned_cols=297  Identities=17%  Similarity=0.165  Sum_probs=230.2

Q ss_pred             CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCC
Q 017094           66 SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLK  144 (377)
Q Consensus        66 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~  144 (377)
                      ..++.++.|++.++.+.... +..|..+++|++|++++|...   ...+..+..+++|++|+|++|.+..+|. .+..++
T Consensus        29 ~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  104 (477)
T 2id5_A           29 GIPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS  104 (477)
T ss_dssp             CCCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred             CCCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence            35678999999998887653 557899999999999998654   2334568899999999999999998875 478999


Q ss_pred             ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEcc
Q 017094          145 HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTIS  223 (377)
Q Consensus       145 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~  223 (377)
                      +|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.++..+ ..+..+++|+.|+++
T Consensus       105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred             CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence            9999999987555556778889999999999998655555677899999999999999988765 458899999999999


Q ss_pred             CCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCC
Q 017094          224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM  297 (377)
Q Consensus       224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~  297 (377)
                      +|......+..+..+++|+.|++++|....      ....+|++|+++++. +..+|...+ ..+++|+.|++++|....
T Consensus       185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAV-RHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHH-TTCTTCCEEECCSSCCCE
T ss_pred             CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHh-cCccccCeeECCCCcCCc
Confidence            988766555678889999999999887655      223389999999874 556665433 678899999999887544


Q ss_pred             CCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          298 ALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       298 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      ..+..+..+++|++|++++|......|..+..+++|+.|++++|. ++..+..    .+..+..+..+.+.++++.
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEES----VFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGG----GBSCGGGCCEEECCSSCEE
T ss_pred             cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHh----HcCCCcccCEEEccCCCcc
Confidence            445567788889999998886555556777888889999988883 4433221    2344567777777777664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.5e-26  Score=210.54  Aligned_cols=222  Identities=25%  Similarity=0.354  Sum_probs=156.5

Q ss_pred             cCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccE
Q 017094           93 LGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQT  172 (377)
Q Consensus        93 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  172 (377)
                      .++++.|+++++.+.    .++..+..+++|++|++++|.+..+|..++.+++|++|++++| .+..+|..++.+++|++
T Consensus        80 ~~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCE
T ss_pred             ccceeEEEccCCCch----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCE
Confidence            366777777766543    2333455677777777777777777777777777777777765 44566777777777777


Q ss_pred             EeccCccccccCchhhcc---------cccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccch
Q 017094          173 LDLEGCLELEELPKDIRY---------LVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRT  243 (377)
Q Consensus       173 L~l~~~~~~~~~p~~l~~---------l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  243 (377)
                      |++++|...+.+|..+..         +++|++|++++|.++..|..++.+++|++|++++|... .++..++.+++|+.
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence            777776666666665543         77777777777777666666777777777777776543 34445666666666


Q ss_pred             hccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCC
Q 017094          244 LLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSL  323 (377)
Q Consensus       244 L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~  323 (377)
                      |++++|...                  ..+|..+  ..+++|++|++++|.....+|..+..+++|++|++++|..++.+
T Consensus       234 L~Ls~n~~~------------------~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          234 LDLRGCTAL------------------RNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             EECTTCTTC------------------CBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             EECcCCcch------------------hhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            666655433                  3566666  67788888888888888888888888888888888888888888


Q ss_pred             CcCCCCCCCcCeeeccC
Q 017094          324 PEDMHHLTTLKLLAIGG  340 (377)
Q Consensus       324 ~~~l~~l~~L~~L~l~~  340 (377)
                      |..+.++++|+.+++..
T Consensus       294 P~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          294 PSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CGGGGGSCTTCEEECCG
T ss_pred             cHHHhhccCceEEeCCH
Confidence            88888888888887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1.4e-26  Score=209.38  Aligned_cols=255  Identities=16%  Similarity=0.189  Sum_probs=200.6

Q ss_pred             CCCcEEEEEeccccc-cchhhhhcccCCceEEEeec-CCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCcCCCCc
Q 017094           69 KRVRHLSFAAANALR-NDFSSLLSYLGRLRTIFFST-DDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKMGNLKH  145 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~  145 (377)
                      .++++|.+.++.+.. ..++..+..+++|++|++++ +...   ..++..+..+++|++|++++|.+. .+|..+..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc---ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            578888888877664 13566788888999999884 5432   234456788888999999888887 77888888889


Q ss_pred             cceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccc-cccEeeecCcccc-cCcccCCCCCCCCEEEcc
Q 017094          146 MRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLV-ILRVFALTTKQKS-LQESGIRSLGSLRCLTIS  223 (377)
Q Consensus       146 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~~~-~~~~~l~~l~~L~~L~l~  223 (377)
                      |++|++++|.....+|..+..+++|++|++++|...+.+|..+..++ +|++|++++|.+. ..+..+..++ |+.|+++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999987755447888888888899999988765557888888887 8889999888887 4556677776 8888888


Q ss_pred             CCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094          224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSL  303 (377)
Q Consensus       224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  303 (377)
                      +|......+..+..+++|+.|++++|....                  ..+. +  ..+++|++|++++|...+.+|.++
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------~~~~-~--~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAF------------------DLGK-V--GLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECC------------------BGGG-C--CCCTTCCEEECCSSCCEECCCGGG
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceee------------------ecCc-c--cccCCCCEEECcCCcccCcCChHH
Confidence            887666667777888888888887775432                  2332 3  677999999999988766899999


Q ss_pred             CCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCC
Q 017094          304 KDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCK  349 (377)
Q Consensus       304 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  349 (377)
                      ..+++|++|++++|.....+|.. ..+++|+.+++.+|+.+...+.
T Consensus       265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred             hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence            99999999999999777688875 8899999999999998776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=4.3e-25  Score=218.36  Aligned_cols=290  Identities=13%  Similarity=0.131  Sum_probs=195.3

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCC-chhhHHHHHHHhhcc------CcccEEEeCCCccccCCc--C
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDD-EKTSQSFVESCFSKS------QFLRVLNLRESALEVCPR--K  139 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~------~~L~~L~L~~~~~~~l~~--~  139 (377)
                      +++++|.+.++.+.. .+|..+.++++|++|++++|. +.  ...++..+..+      ++|++|++++|.+..+|.  .
T Consensus       249 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~--~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~  325 (636)
T 4eco_A          249 KDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGIS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS  325 (636)
T ss_dssp             TTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSC--HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred             CCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCc--cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence            589999999887655 357789999999999999986 43  11345555554      899999999999999998  8


Q ss_pred             cCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccc-ccEeeecCcccccCcccCCCCC--C
Q 017094          140 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVI-LRVFALTTKQKSLQESGIRSLG--S  216 (377)
Q Consensus       140 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~l~~l~--~  216 (377)
                      ++.+++|++|++++|...+.+| .++.+++|++|++++| .+..+|..+..+++ |++|++++|.++..|..+..+.  +
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV  403 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence            9999999999999875444888 7888899999999887 45588888888888 8888888888876665555433  6


Q ss_pred             CCEEEccCCCCchhhHHhcc-------cCcccchhccccCCCCccC------CC--------------------------
Q 017094          217 LRCLTISGCRDLEHLFEEIE-------QLSLLRTLLIHSYDDRKNT------RP--------------------------  257 (377)
Q Consensus       217 L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~------~~--------------------------  257 (377)
                      |+.|++++|......|..+.       .+++|+.|++++|.....+      .+                          
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~  483 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN  483 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence            66666666665444444444       4444555555444333200      12                          


Q ss_pred             -----ccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceeccc------CcccCCCCCcC
Q 017094          258 -----RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIR------GCPKLSSLPED  326 (377)
Q Consensus       258 -----~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~------~~~~~~~~~~~  326 (377)
                           +|++|+++++.. ..+|..+....+++|++|++++|... .+|..+..+++|++|+++      +|...+.+|..
T Consensus       484 ~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~  561 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG  561 (636)
T ss_dssp             CTTGGGCCEEECCSSCC-CBCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred             ccccCCccEEECcCCcC-CccChhhhhccCCCcCEEECCCCCCC-CcChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence                 566666666533 35665551126667777777766533 366666667777777773      34445566666


Q ss_pred             CCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          327 MHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       327 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      +..+++|++|++++|.- +.++..     +  ...+..+.+.++++.
T Consensus       562 l~~l~~L~~L~Ls~N~l-~~ip~~-----~--~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          562 ITLCPSLTQLQIGSNDI-RKVNEK-----I--TPNISVLDIKDNPNI  600 (636)
T ss_dssp             GGGCSSCCEEECCSSCC-CBCCSC-----C--CTTCCEEECCSCTTC
T ss_pred             HhcCCCCCEEECCCCcC-CccCHh-----H--hCcCCEEECcCCCCc
Confidence            66777777777777654 443332     1  145666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=1.3e-25  Score=226.74  Aligned_cols=298  Identities=16%  Similarity=0.169  Sum_probs=214.8

Q ss_pred             CCCcEEEEEeccccccchh-hhhcccCCceEEEeecCCchh-hHHHH---------------------HHHhhc--cCcc
Q 017094           69 KRVRHLSFAAANALRNDFS-SLLSYLGRLRTIFFSTDDEKT-SQSFV---------------------ESCFSK--SQFL  123 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~---------------------~~~~~~--~~~L  123 (377)
                      +++++|.+.++.+... ++ ..+..+++|++|++++|.... ....+                     +..+..  +++|
T Consensus       318 ~~L~~L~L~~n~l~~~-ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          318 SLLESLALSSNNFSGE-LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             TTCCEEECCSSEEEEE-CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CCccEEECCCCcccCc-CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            4677777777655421 22 236677777777777765431 11111                     011111  4567


Q ss_pred             cEEEeCCCccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCc
Q 017094          124 RVLNLRESALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTK  202 (377)
Q Consensus       124 ~~L~L~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  202 (377)
                      ++|++++|.+. .+|..+..+++|++|++++|.....+|..++.+++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            77777777765 56777788888888888877555577777888888888888887666678888888888888888888


Q ss_pred             ccc-cCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccch
Q 017094          203 QKS-LQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQ  275 (377)
Q Consensus       203 ~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~  275 (377)
                      .+. ..|..+..+++|+.|++++|+....+|..++.+++|+.|++++|....      ...++|+.|+++++.....+|.
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            887 446678888888899988888777788888888899999998887653      3356889999988876656665


Q ss_pred             hhhh--------------------------------------------------------------------cCCCCccE
Q 017094          276 WLLQ--------------------------------------------------------------------CCTDTLHT  287 (377)
Q Consensus       276 ~~~~--------------------------------------------------------------------~~~~~L~~  287 (377)
                      +++.                                                                    ..+++|+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~  636 (768)
T 3rgz_A          557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF  636 (768)
T ss_dssp             GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred             HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence            4421                                                                    12467889


Q ss_pred             EeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEe
Q 017094          288 LVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIEL  367 (377)
Q Consensus       288 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~  367 (377)
                      |++++|...+.+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.--...+..     +..+..+..+.+
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-----l~~l~~L~~L~l  711 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-----MSALTMLTEIDL  711 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-----GGGCCCCSEEEC
T ss_pred             EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-----HhCCCCCCEEEC
Confidence            999998877789999999999999999999877789999999999999999998644333322     344556666666


Q ss_pred             CCCcc
Q 017094          368 DDEII  372 (377)
Q Consensus       368 ~~~~~  372 (377)
                      .++.+
T Consensus       712 s~N~l  716 (768)
T 3rgz_A          712 SNNNL  716 (768)
T ss_dssp             CSSEE
T ss_pred             cCCcc
Confidence            55543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1e-24  Score=200.09  Aligned_cols=278  Identities=18%  Similarity=0.216  Sum_probs=169.9

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      +++++|.+.++.+....  . +..+++|++|++++|.....     ..+..+++|++|++++|.+..++. +..+++|++
T Consensus        66 ~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~  136 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDIS--P-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS  136 (347)
T ss_dssp             TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             CCccEEEccCCccccch--h-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence            35666666655544432  1 55666666666666544321     135566666666666666655544 556666666


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  228 (377)
                      |++++|.....++. +..+++|++|++++| .+..++. +..+++|+.|++++|.+...+. +..+++|+.+++++|...
T Consensus       137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          137 LNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             EECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC
Confidence            66665544444333 566666666666665 3333333 5666677777777766665533 666677777777766543


Q ss_pred             hhhHHhcccCcccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC
Q 017094          229 EHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK  304 (377)
Q Consensus       229 ~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  304 (377)
                      ...+  +..+++|+.|++++|....    ...++|++|+++++. +..++ .+  ..+++|++|++++|. +..++ .+.
T Consensus       213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~--~~l~~L~~L~l~~n~-l~~~~-~~~  284 (347)
T 4fmz_A          213 DITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDIN-AV--KDLTKLKMLNVGSNQ-ISDIS-VLN  284 (347)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG-GG--TTCTTCCEEECCSSC-CCCCG-GGG
T ss_pred             CCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCCh-hH--hcCCCcCEEEccCCc-cCCCh-hhc
Confidence            3222  6677778888887776554    234678888887763 33443 33  677888888888774 44443 467


Q ss_pred             CCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094          305 DLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       305 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      .+++|++|++++|......+..+..+++|+.|++++|+ ++..+.      +..+.+++.+.+.++.+++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~------~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP------LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG------GGGCTTCSEESSSCC----
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC------hhhhhccceeehhhhcccC
Confidence            78888888888886555555667778888888888886 333321      3456778888888887753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.3e-25  Score=204.29  Aligned_cols=222  Identities=21%  Similarity=0.288  Sum_probs=196.7

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      ..++.|++.++.+.  .++..+..+++|++|++++|.+.    .++..+..+++|++|++++|.+..+|..+..+++|++
T Consensus        81 ~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~----~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           81 PGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM----ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE  154 (328)
T ss_dssp             TTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC----CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred             cceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc----chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence            58999999998877  45667888999999999998754    3456688999999999999999999999999999999


Q ss_pred             EeccCCCcccccChhhcC---------CCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCE
Q 017094          149 LDLSRNSKIKKLPKSICE---------LQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRC  219 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~---------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~  219 (377)
                      |++++|...+.+|..+..         +++|++|++++| .+..+|..++.+++|++|++++|.+...+..++.+++|+.
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence            999998888888887664         999999999997 5668999999999999999999999988888999999999


Q ss_pred             EEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCC
Q 017094          220 LTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL  299 (377)
Q Consensus       220 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l  299 (377)
                      |++++|...+.+|..++.+++|+.|++++|...                  ..+|.++  ..+++|++|++++|...+.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~------------------~~~p~~~--~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL------------------LTLPLDI--HRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC------------------CBCCTTG--GGCTTCCEEECTTCTTCCCC
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCch------------------hhcchhh--hcCCCCCEEeCCCCCchhhc
Confidence            999999988888888888888888888777644                  3777777  88999999999999999999


Q ss_pred             CccCCCCccCceecccCc
Q 017094          300 PGSLKDLEALETLAIRGC  317 (377)
Q Consensus       300 ~~~~~~l~~L~~L~l~~~  317 (377)
                      |.++..+++|+.+++..+
T Consensus       294 P~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          294 PSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CGGGGGSCTTCEEECCGG
T ss_pred             cHHHhhccCceEEeCCHH
Confidence            999999999999999865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.1e-25  Score=222.70  Aligned_cols=269  Identities=13%  Similarity=0.103  Sum_probs=205.7

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCch-----------------------------------------
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEK-----------------------------------------  107 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------------------------  107 (377)
                      .+++.|++.++.+.. .+++.+.++++|++|++++|...                                         
T Consensus        81 ~~V~~L~L~~~~l~g-~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSCCEE-EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcccCC-cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            488999999887653 46788999999999999988430                                         


Q ss_pred             ----------------------------------hhHHHHHHHhhccCcccEEEeCCCcccc------------------
Q 017094          108 ----------------------------------TSQSFVESCFSKSQFLRVLNLRESALEV------------------  135 (377)
Q Consensus       108 ----------------------------------~~~~~~~~~~~~~~~L~~L~L~~~~~~~------------------  135 (377)
                                                        .... ++..+..+++|++|+|++|.+..                  
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence                                              0011 45668899999999999999987                  


Q ss_pred             CCcCcC--CCCccceEeccCCCcccccChhhcCCCcccEEeccCcc-ccc-cCchhhccc------ccccEeeecCcccc
Q 017094          136 CPRKMG--NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCL-ELE-ELPKDIRYL------VILRVFALTTKQKS  205 (377)
Q Consensus       136 l~~~~~--~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~-~~p~~l~~l------~~L~~L~l~~~~~~  205 (377)
                      +|..++  .+++|++|++++|.....+|..++++++|++|++++|. ..+ .+|..++.+      ++|++|++++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            999999  99999999999988788999999999999999999986 444 688888877      99999999999999


Q ss_pred             cCcc--cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-----cCCCc-cceEEecccccccccchhh
Q 017094          206 LQES--GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-----NTRPR-LRRVFIKEITQLLELPQWL  277 (377)
Q Consensus       206 ~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~-L~~L~l~~~~~~~~l~~~~  277 (377)
                      ..|.  .++.+++|+.|++++|...+.+| .++.+++|+.|++++|....     ...++ |++|+++++.. ..+|.++
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l-~~lp~~~  396 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIF  396 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC-SSCCSCC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC-cccchhh
Confidence            8777  79999999999999998766777 78888899999998886543     12335 88888888753 3677655


Q ss_pred             hhcCCCCccEEeecCCCCCCCCCccCC-------CCccCceecccCcccCCCCCcCC-CCCCCcCeeeccCCC
Q 017094          278 LQCCTDTLHTLVIGDCPNFMALPGSLK-------DLEALETLAIRGCPKLSSLPEDM-HHLTTLKLLAIGGCP  342 (377)
Q Consensus       278 ~~~~~~~L~~L~l~~~~~~~~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~c~  342 (377)
                      ....+++|++|++++|......|..+.       .+++|++|++++|. ++.+|..+ ..+++|++|++++|.
T Consensus       397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC
T ss_pred             hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC
Confidence            222334777777777766555565555       55667777776663 33454332 345666666666553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=3.3e-24  Score=207.39  Aligned_cols=291  Identities=17%  Similarity=0.166  Sum_probs=173.8

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR  147 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~  147 (377)
                      ++++++|++.++.+.... +..+..+++|++|++++|...   ...+..+..+++|++|++++|.+..+|..  .+++|+
T Consensus        20 ~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~   93 (520)
T 2z7x_B           20 SQKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK   93 (520)
T ss_dssp             CTTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred             cccccEEECCCCcccccC-hhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence            367888888887766542 456778888888888887653   22345577788888888888888777766  678888


Q ss_pred             eEeccCCCccc-ccChhhcCCCcccEEeccCccccc-------------------------cCchhhccc----------
Q 017094          148 YLDLSRNSKIK-KLPKSICELQSLQTLDLEGCLELE-------------------------ELPKDIRYL----------  191 (377)
Q Consensus       148 ~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~-------------------------~~p~~l~~l----------  191 (377)
                      +|++++|.... .+|..++.+++|++|++++|....                         ..|..+..+          
T Consensus        94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             EEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            88888764333 356677777777777777653211                         111111111          


Q ss_pred             -------------------------------------------------------------------------ccccEee
Q 017094          192 -------------------------------------------------------------------------VILRVFA  198 (377)
Q Consensus       192 -------------------------------------------------------------------------~~L~~L~  198 (377)
                                                                                               ++|++|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence                                                                                     1344444


Q ss_pred             ecCcccc-cCcccC-----------------------------------------------------CCCCCCCEEEccC
Q 017094          199 LTTKQKS-LQESGI-----------------------------------------------------RSLGSLRCLTISG  224 (377)
Q Consensus       199 l~~~~~~-~~~~~l-----------------------------------------------------~~l~~L~~L~l~~  224 (377)
                      +++|.+. ..|..+                                                     ..+++|+.|++++
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~  333 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN  333 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred             eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence            4444433 222222                                                     3445555555555


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCCc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF  296 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~  296 (377)
                      |......+..++.+++|+.|++++|....        ...++|++|+++++.....+|...+ ..+++|++|++++|...
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-SWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC-CCCTTCCEEECCSSCCC
T ss_pred             CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh-ccCccCCEEECcCCCCC
Confidence            55444445555556666666666555442        2334566666665543333444311 34556666666665543


Q ss_pred             CCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          297 MALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       297 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      +.+|..+.  ++|++|++++| .++.+|..+..+++|++|++++|. ++..+..    .+..+.++..+.+.++++.
T Consensus       413 ~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~----~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          413 DTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDG----IFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             GGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTT----TTTTCTTCCEEECCSSCBC
T ss_pred             cchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHH----HhccCCcccEEECcCCCCc
Confidence            44443332  57777777776 455777766788888888888873 4444332    2455677888888888775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1e-23  Score=213.00  Aligned_cols=289  Identities=13%  Similarity=0.150  Sum_probs=201.5

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCC-chhhHHHHHHHhhcc-------CcccEEEeCCCccccCCc--
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDD-EKTSQSFVESCFSKS-------QFLRVLNLRESALEVCPR--  138 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~-------~~L~~L~L~~~~~~~l~~--  138 (377)
                      +++++|.+.++.+.. .+|..+.++++|+.|++++|. +..  ..++..+..+       ++|++|++++|.+..+|.  
T Consensus       491 ~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg--~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~  567 (876)
T 4ecn_A          491 KDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISA--AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA  567 (876)
T ss_dssp             TTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCH--HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred             CCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCccc--ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence            589999999887654 357789999999999999986 431  1344444444       499999999999999998  


Q ss_pred             CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccc-ccEeeecCcccccCcccCCCCCC-
Q 017094          139 KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVI-LRVFALTTKQKSLQESGIRSLGS-  216 (377)
Q Consensus       139 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~l~~l~~-  216 (377)
                      .++.+++|++|++++| .+..+| .++.+++|++|++++|. +..+|..+..+++ |+.|++++|.+...|..+..++. 
T Consensus       568 ~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~  644 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY  644 (876)
T ss_dssp             HHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred             hhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence            8999999999999976 455888 78899999999999874 4588888888988 99999999888766655544432 


Q ss_pred             -CCEEEccCCCCch----------------------------hhHHhc-ccCcccchhccccCCCCccC-----------
Q 017094          217 -LRCLTISGCRDLE----------------------------HLFEEI-EQLSLLRTLLIHSYDDRKNT-----------  255 (377)
Q Consensus       217 -L~~L~l~~~~~~~----------------------------~~~~~l-~~l~~L~~L~l~~~~~~~~~-----------  255 (377)
                       |+.|++++|....                            .+|..+ ..+++|+.|++++|.....+           
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l  724 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY  724 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence             5555555554322                            233332 35566666766666544311           


Q ss_pred             --CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccC------cccCCCCCcCC
Q 017094          256 --RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRG------CPKLSSLPEDM  327 (377)
Q Consensus       256 --~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~------~~~~~~~~~~l  327 (377)
                        .++|+.|+|+++. +..+|..+....+++|+.|++++|.. ..+|..+..+++|+.|+|++      |.....+|..+
T Consensus       725 ~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          725 KNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             TTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             cccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence              0167777777763 34677666212677788888877653 34777777777888887765      44455667777


Q ss_pred             CCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          328 HHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       328 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      ..+++|+.|++++|.- +.++...       ...+..+.+.++++.
T Consensus       803 ~~L~~L~~L~Ls~N~L-~~Ip~~l-------~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDI-RKVDEKL-------TPQLYILDIADNPNI  840 (876)
T ss_dssp             GGCSSCCEEECCSSCC-CBCCSCC-------CSSSCEEECCSCTTC
T ss_pred             hcCCCCCEEECCCCCC-CccCHhh-------cCCCCEEECCCCCCC
Confidence            7778888888887754 4443331       146677777776664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=3.8e-24  Score=210.81  Aligned_cols=223  Identities=19%  Similarity=0.136  Sum_probs=109.9

Q ss_pred             hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchh-hcccccccE
Q 017094          118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRV  196 (377)
Q Consensus       118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~  196 (377)
                      ..+++|++|++++|.+..+|..+..+++|++|++++|......|..+..+++|++|++++|.....+|.. +..+++|++
T Consensus       275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            3344455555555554444444555555555555544222222334444555555555544333233322 445555555


Q ss_pred             eeecCcccccC---cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-------cCCCccceEEecc
Q 017094          197 FALTTKQKSLQ---ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-------NTRPRLRRVFIKE  266 (377)
Q Consensus       197 L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~L~~L~l~~  266 (377)
                      |++++|.+...   +..+..+++|+.|++++|......+..+..+++|+.|++++|....       ...++|++|++++
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH  434 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence            55555554432   2344555555555555554443334445555555555555554322       1224566666665


Q ss_pred             cccccccchhhhhcCCCCccEEeecCCCCCC---CCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          267 ITQLLELPQWLLQCCTDTLHTLVIGDCPNFM---ALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       267 ~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      +......|..+  ..+++|++|++++|...+   ..+..+..+++|++|++++|...+..|..+..+++|++|++++|.
T Consensus       435 n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          435 SLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            54333334344  455666666666554322   112335556666666666664433445556666666666666663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=3.9e-24  Score=210.77  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCcc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHM  146 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L  146 (377)
                      ++.+++|++.++.+.... +..+.++++|++|++++|...   ...+..+..+++|++|++++|.+..+ |..++.+++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            345666666655554432 234555566666666555432   11223345555555555555555544 4455555555


Q ss_pred             ceEeccCCCcccccChhhcCCCcccEEeccCccccc-cCchhhcccccccEeeecCc
Q 017094          147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE-ELPKDIRYLVILRVFALTTK  202 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~  202 (377)
                      ++|++++|......+..++++++|++|++++|.... .+|..++++++|++|++++|
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            555555442211112334444444444444442221 23444444444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=2.1e-24  Score=205.28  Aligned_cols=271  Identities=14%  Similarity=0.128  Sum_probs=205.7

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cC-CcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VC-PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ  171 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  171 (377)
                      ++|++|++++|...   ...+..+..+++|++|++++|.+. .+ +..+..+++|++|++++|......|..++.+++|+
T Consensus        30 ~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  106 (455)
T 3v47_A           30 AHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE  106 (455)
T ss_dssp             TTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred             CccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence            78999999998654   233456889999999999999885 44 56799999999999998755555588899999999


Q ss_pred             EEeccCccccccCchh--hcccccccEeeecCcccccCc-cc-CCCCCCCCEEEccCCCCchhhHHhccc----------
Q 017094          172 TLDLEGCLELEELPKD--IRYLVILRVFALTTKQKSLQE-SG-IRSLGSLRCLTISGCRDLEHLFEEIEQ----------  237 (377)
Q Consensus       172 ~L~l~~~~~~~~~p~~--l~~l~~L~~L~l~~~~~~~~~-~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~----------  237 (377)
                      +|++++|...+..|..  +..+++|++|++++|.+.... .. +..+++|++|++++|......+..+..          
T Consensus       107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~  186 (455)
T 3v47_A          107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR  186 (455)
T ss_dssp             EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred             EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence            9999998654445554  889999999999999998763 33 789999999999998765444433333          


Q ss_pred             ------------------------CcccchhccccCCCCc----------------------------------------
Q 017094          238 ------------------------LSLLRTLLIHSYDDRK----------------------------------------  253 (377)
Q Consensus       238 ------------------------l~~L~~L~l~~~~~~~----------------------------------------  253 (377)
                                              +++|+.|++++|....                                        
T Consensus       187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  266 (455)
T 3v47_A          187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN  266 (455)
T ss_dssp             CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred             cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence                                    3567788887775432                                        


Q ss_pred             -----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCC
Q 017094          254 -----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMH  328 (377)
Q Consensus       254 -----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  328 (377)
                           ...++|++|+++++......|.++  ..+++|++|++++|......|..+..+++|++|++++|...+..|..+.
T Consensus       267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  344 (455)
T 3v47_A          267 FTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE  344 (455)
T ss_dssp             TTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred             cccccccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence                 011467777777765554555566  7788999999998876655677888899999999999865444467778


Q ss_pred             CCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094          329 HLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       329 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      .+++|++|++++|. ++....    ..+..+.+++.+.+.++.+++
T Consensus       345 ~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          345 NLDKLEVLDLSYNH-IRALGD----QSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             TCTTCCEEECCSSC-CCEECT----TTTTTCTTCCEEECCSSCCSC
T ss_pred             CcccCCEEECCCCc-ccccCh----hhccccccccEEECCCCcccc
Confidence            89999999999985 333322    235567888888888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=1.6e-23  Score=192.10  Aligned_cols=278  Identities=18%  Similarity=0.228  Sum_probs=222.6

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      +.+++|.+.++.+....   .+..+++|++|++++|......    . +..+++|++|++++|.+..++ .+..+++|++
T Consensus        44 ~~L~~L~l~~~~i~~~~---~~~~~~~L~~L~l~~n~i~~~~----~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~  114 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDIS----P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE  114 (347)
T ss_dssp             TTCSEEECCSSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             ccccEEEEeCCccccch---hhhhcCCccEEEccCCccccch----h-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence            48999999988776643   5888999999999998764322    2 889999999999999998875 6899999999


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  228 (377)
                      |++++| .+..++. +..+++|++|++++|.....++. +..+++|++|++++|.+...+. +..+++|+.|++++|...
T Consensus       115 L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          115 LYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             EECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred             EECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence            999976 5666666 88999999999999866666554 8999999999999999887754 889999999999998754


Q ss_pred             hhhHHhcccCcccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC
Q 017094          229 EHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK  304 (377)
Q Consensus       229 ~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  304 (377)
                      . ++. +..+++|+.|++++|....    ...++|++|+++++. +..++. +  ..+++|++|++++|. +..+ ..+.
T Consensus       191 ~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~n~-l~~~-~~~~  262 (347)
T 4fmz_A          191 D-ISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP-L--ANLSQLTWLEIGTNQ-ISDI-NAVK  262 (347)
T ss_dssp             C-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-G--TTCTTCCEEECCSSC-CCCC-GGGT
T ss_pred             c-ccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc-h--hcCCCCCEEECCCCc-cCCC-hhHh
Confidence            3 333 7889999999999987665    345789999999985 445555 4  788999999999985 4455 4578


Q ss_pred             CCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094          305 DLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       305 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      .+++|++|++++| .++.++ .+..+++|+.|++++|+--...+.     .+..+..++.+.+.++.+..
T Consensus       263 ~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          263 DLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDME-----VIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             TCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHH-----HHHTCTTCSEEECCSSSCCC
T ss_pred             cCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChh-----HhhccccCCEEEccCCcccc
Confidence            9999999999998 456565 478899999999999963222211     13346778888888887764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=6.4e-24  Score=197.95  Aligned_cols=284  Identities=13%  Similarity=0.104  Sum_probs=186.4

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~  147 (377)
                      ++++++.+.++.+.... +..+..+++|++|++++|...   ...+..+..+++|++|++++|.+..++ ..++.+++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             CCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCceEEEecCCchhhCC-hhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            57889999888766643 335788999999999987653   223345788899999999999988764 4578899999


Q ss_pred             eEeccCCCcccccChh-hcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094          148 YLDLSRNSKIKKLPKS-ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  226 (377)
                      +|++++| .+..+|.. +..+++|++|++++|......|..+..+++|+.|++++|.++..  .+..+++|+.|++++|.
T Consensus       121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred             EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc
Confidence            9999976 56677765 47899999999998754444455688899999999999988765  35556667776666654


Q ss_pred             Cch------------------hhHHhcccCcccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcCCCC
Q 017094          227 DLE------------------HLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDT  284 (377)
Q Consensus       227 ~~~------------------~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~  284 (377)
                      ...                  .++.  ...++|+.|++++|....    ...++|++|+++++......|..+  ..+++
T Consensus       198 l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~  273 (390)
T 3o6n_A          198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQR  273 (390)
T ss_dssp             CSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG--TTCSS
T ss_pred             ccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHc--ccccc
Confidence            321                  0100  112345555555554433    223466666666654333334444  55666


Q ss_pred             ccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccce
Q 017094          285 LHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQ  364 (377)
Q Consensus       285 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~  364 (377)
                      |++|++++|. +..+|..+..+++|++|++++| .++.+|..+..+++|+.|++++|+ ++..       .......++.
T Consensus       274 L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~-------~~~~~~~L~~  343 (390)
T 3o6n_A          274 LERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL-------KLSTHHTLKN  343 (390)
T ss_dssp             CCEEECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC-------CCCTTCCCSE
T ss_pred             CCEEECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-ccee-------CchhhccCCE
Confidence            6666666654 3445555556667777777666 344556555666677777777665 2222       1334566777


Q ss_pred             EEeCCCccC
Q 017094          365 IELDDEIIK  373 (377)
Q Consensus       365 ~~~~~~~~~  373 (377)
                      +.+.++++.
T Consensus       344 L~l~~N~~~  352 (390)
T 3o6n_A          344 LTLSHNDWD  352 (390)
T ss_dssp             EECCSSCEE
T ss_pred             EEcCCCCcc
Confidence            777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=6.2e-24  Score=216.74  Aligned_cols=270  Identities=14%  Similarity=0.098  Sum_probs=173.6

Q ss_pred             CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCc
Q 017094           67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKH  145 (377)
Q Consensus        67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~  145 (377)
                      .++.+++|++.++.+.... +..+..+++|++|++++|...  ....+..+..+++|++|+|++|.+..+ |..++.+++
T Consensus        22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            6679999999998877643 557899999999999987432  222245688999999999999998865 788999999


Q ss_pred             cceEeccCCCcccccChh--hcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccC-cccCCCC--CCCCE
Q 017094          146 MRYLDLSRNSKIKKLPKS--ICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQ-ESGIRSL--GSLRC  219 (377)
Q Consensus       146 L~~L~l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l--~~L~~  219 (377)
                      |++|++++|.....+|..  ++.+++|++|++++|...... +..++++++|+.|++++|.+... +..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            999999987554445554  889999999999998544433 35789999999999999887643 2344433  55666


Q ss_pred             EEccCCCCchhhHHhcccCcc------cchhccccCCCCc----------------------------------------
Q 017094          220 LTISGCRDLEHLFEEIEQLSL------LRTLLIHSYDDRK----------------------------------------  253 (377)
Q Consensus       220 L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~----------------------------------------  253 (377)
                      |++++|......+..++.+++      |+.|++++|....                                        
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            666555544433333333332      5555555442110                                        


Q ss_pred             ----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCC
Q 017094          254 ----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHH  329 (377)
Q Consensus       254 ----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  329 (377)
                          ..+++|+.|+++++......+..+  ..+++|+.|++++|......+..+.++++|++|++++|......|..+..
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  336 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG  336 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred             hhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence                002355666665554332223333  45556666666665543344445555666666666655433333445555


Q ss_pred             CCCcCeeeccCC
Q 017094          330 LTTLKLLAIGGC  341 (377)
Q Consensus       330 l~~L~~L~l~~c  341 (377)
                      +++|+.|++++|
T Consensus       337 l~~L~~L~L~~N  348 (844)
T 3j0a_A          337 LPKVAYIDLQKN  348 (844)
T ss_dssp             CTTCCEEECCSC
T ss_pred             CCCCCEEECCCC
Confidence            566666666555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=2.9e-24  Score=205.62  Aligned_cols=269  Identities=19%  Similarity=0.188  Sum_probs=218.1

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCcc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHM  146 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L  146 (377)
                      .+++++|.+.++.+.... +..+.++++|++|++++|....   .....+..+++|++|++++|.+..+ +..+..+++|
T Consensus        55 l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           55 FPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKL---IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCS---CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCc---cCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            358999999988776643 5679999999999999986542   2234578899999999999998865 6678999999


Q ss_pred             ceEeccCCCcccccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccC
Q 017094          147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISG  224 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~  224 (377)
                      ++|++++|......+..+..+++|++|++++|. +..+| ..+..+++|+.|++++|.+...+ ..+..+++|+.|++++
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence            999999875444556678899999999999984 45554 46899999999999999888654 5788999999999999


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA  298 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~  298 (377)
                      |.....++.......+|+.|++++|....      ...++|+.|+++++.. ..++...+ ..+++|++|++++|.....
T Consensus       210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~  287 (477)
T 2id5_A          210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSML-HELLRLQEIQLVGGQLAVV  287 (477)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC-CEECTTSC-TTCTTCCEEECCSSCCSEE
T ss_pred             CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC-CccChhhc-cccccCCEEECCCCccceE
Confidence            98887777776667799999999987655      3357899999999864 44444322 6789999999999876666


Q ss_pred             CCccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeeeccCCCCc
Q 017094          299 LPGSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAIGGCPAL  344 (377)
Q Consensus       299 l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~c~~l  344 (377)
                      .|..+..+++|++|++++|. ++.++ ..+..+++|+.|++.+|+--
T Consensus       288 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          288 EPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCcc
Confidence            68889999999999999985 55555 45688999999999998743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=8.5e-24  Score=211.12  Aligned_cols=294  Identities=16%  Similarity=0.137  Sum_probs=195.6

Q ss_pred             CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCC
Q 017094           66 SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLK  144 (377)
Q Consensus        66 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~  144 (377)
                      ..++++++|++.++.+.... +..+.++++|++|++++|...   ...+..+..+++|++|++++|.+..+|. .++.++
T Consensus        22 ~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~   97 (680)
T 1ziw_A           22 DLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT   97 (680)
T ss_dssp             CSCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence            34578999999998877643 456899999999999988654   2334568899999999999999998886 589999


Q ss_pred             ccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcc-c--CCCCCCCCEE
Q 017094          145 HMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-G--IRSLGSLRCL  220 (377)
Q Consensus       145 ~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~--l~~l~~L~~L  220 (377)
                      +|++|++++|. +..++ ..++.+++|++|++++|......|..+.++++|++|++++|.++..+. .  ...+++|+.|
T Consensus        98 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  176 (680)
T 1ziw_A           98 NLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL  176 (680)
T ss_dssp             TCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred             CCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence            99999999874 45554 678999999999999986655567778899999999999998876542 2  3356889999


Q ss_pred             EccCCCCchhhHHhcccCcccchhcc---------------------------ccCCCCccC------C--CccceEEec
Q 017094          221 TISGCRDLEHLFEEIEQLSLLRTLLI---------------------------HSYDDRKNT------R--PRLRRVFIK  265 (377)
Q Consensus       221 ~l~~~~~~~~~~~~l~~l~~L~~L~l---------------------------~~~~~~~~~------~--~~L~~L~l~  265 (377)
                      ++++|......+..+..+++|+.|.+                           ++|......      .  ++|++|+++
T Consensus       177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls  256 (680)
T 1ziw_A          177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS  256 (680)
T ss_dssp             ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred             ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence            99998765544555555555554444                           444322210      1  236666666


Q ss_pred             ccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCC-----CCCc----CCCCCCCcCee
Q 017094          266 EITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS-----SLPE----DMHHLTTLKLL  336 (377)
Q Consensus       266 ~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----~~~~----~l~~l~~L~~L  336 (377)
                      ++......+.++  ..+++|++|++++|......|..+.++++|++|++++|....     .+|.    .+..+++|+.|
T Consensus       257 ~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L  334 (680)
T 1ziw_A          257 YNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL  334 (680)
T ss_dssp             TSCCCEECTTTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred             CCCcCccCcccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence            554332223333  555666666666655444445556666666666666542211     2222    34556666666


Q ss_pred             eccCCCCccccCCCCCCCCCCCCCccceEEeCCCc
Q 017094          337 AIGGCPALSERCKPPTGEDWPKIAHITQIELDDEI  371 (377)
Q Consensus       337 ~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~  371 (377)
                      ++++|. ++..    ....+..+..++.+.+.++.
T Consensus       335 ~l~~n~-l~~~----~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          335 NMEDND-IPGI----KSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             ECCSCC-BCCC----CTTTTTTCTTCCEEECTTCB
T ss_pred             ECCCCc-cCCC----ChhHhccccCCcEEECCCCc
Confidence            666663 2221    11224455667777766543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=5.8e-24  Score=214.71  Aligned_cols=262  Identities=15%  Similarity=0.132  Sum_probs=185.3

Q ss_pred             CCCcEEEEEecccccc----------------chhhhhc--ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCC
Q 017094           69 KRVRHLSFAAANALRN----------------DFSSLLS--YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRE  130 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  130 (377)
                      ++++.|.+.++.+...                .+|..+.  ++++|+.|++++|...   ..++..+..+++|++|++++
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~---~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM---TQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC---CSCCGGGGGCSSCCEEECTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC---ccChHHHhCCCCCCEEECcC
Confidence            4899999999887662                2677766  9999999999998643   34457789999999999999


Q ss_pred             Cc-ccc--CCcCcCCCC-------ccceEeccCCCcccccCh--hhcCCCcccEEeccCccccccCchhhcccccccEee
Q 017094          131 SA-LEV--CPRKMGNLK-------HMRYLDLSRNSKIKKLPK--SICELQSLQTLDLEGCLELEELPKDIRYLVILRVFA  198 (377)
Q Consensus       131 ~~-~~~--l~~~~~~l~-------~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  198 (377)
                      |. +..  +|..++.++       +|++|++++| .+..+|.  .++.+++|++|++++|. +..+| .++.+++|+.|+
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEE
Confidence            98 764  776655554       9999999987 5569998  89999999999999985 55888 899999999999


Q ss_pred             ecCcccccCcccCCCCCC-CCEEEccCCCCchhhHHhcccCc--ccchhccccCCCCcc-----------CCCccceEEe
Q 017094          199 LTTKQKSLQESGIRSLGS-LRCLTISGCRDLEHLFEEIEQLS--LLRTLLIHSYDDRKN-----------TRPRLRRVFI  264 (377)
Q Consensus       199 l~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~-----------~~~~L~~L~l  264 (377)
                      +++|.+...|..+..+++ |+.|++++|... .+|..+..++  +|+.|++++|.....           ..++|+.|++
T Consensus       602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L  680 (876)
T 4ecn_A          602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL  680 (876)
T ss_dssp             CCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred             CcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence            999999988888999999 999999998855 6776666554  388888888765331           1236777777


Q ss_pred             cccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCC--------CccCceecccCcccCCCCCcCCC--CCCCcC
Q 017094          265 KEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKD--------LEALETLAIRGCPKLSSLPEDMH--HLTTLK  334 (377)
Q Consensus       265 ~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~  334 (377)
                      +++.. ..+|..++ ..+++|+.|++++|. +..+|..+..        +++|+.|+|++| .++.+|..+.  .+++|+
T Consensus       681 s~N~L-~~lp~~~~-~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~  756 (876)
T 4ecn_A          681 SYNEI-QKFPTELF-ATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLS  756 (876)
T ss_dssp             CSSCC-CSCCHHHH-HTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCC
T ss_pred             cCCcC-CccCHHHH-ccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcC
Confidence            66533 35555442 245555555555543 2244433221        124555555544 2234444443  444444


Q ss_pred             eeeccCC
Q 017094          335 LLAIGGC  341 (377)
Q Consensus       335 ~L~l~~c  341 (377)
                      .|++++|
T Consensus       757 ~L~Ls~N  763 (876)
T 4ecn_A          757 NMDVSYN  763 (876)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            4444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=2.8e-23  Score=202.82  Aligned_cols=291  Identities=17%  Similarity=0.180  Sum_probs=190.5

Q ss_pred             CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCcc
Q 017094           67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM  146 (377)
Q Consensus        67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L  146 (377)
                      .++.+++|++.++.+.... +..+..+++|++|++++|...   ...+..+..+++|++|++++|.+..+|..  .+++|
T Consensus        50 ~~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           50 LPPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL  123 (562)
T ss_dssp             SCTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred             CCCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence            4478999999998877643 457899999999999998654   23345688899999999999999888877  78999


Q ss_pred             ceEeccCCCcccc--cChhhcCCCcccEEeccCcccccc-------------------------Cchhhcc---------
Q 017094          147 RYLDLSRNSKIKK--LPKSICELQSLQTLDLEGCLELEE-------------------------LPKDIRY---------  190 (377)
Q Consensus       147 ~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~-------------------------~p~~l~~---------  190 (377)
                      ++|++++|. +..  .|..++++++|++|++++|.....                         .|..+..         
T Consensus       124 ~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~  202 (562)
T 3a79_B          124 RHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV  202 (562)
T ss_dssp             SEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred             CEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence            999999774 444  346788888888888887642210                         0111111         


Q ss_pred             -----------------cc-------------------------------------------------------cccEee
Q 017094          191 -----------------LV-------------------------------------------------------ILRVFA  198 (377)
Q Consensus       191 -----------------l~-------------------------------------------------------~L~~L~  198 (377)
                                       ++                                                       +|++|+
T Consensus       203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~  282 (562)
T 3a79_B          203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN  282 (562)
T ss_dssp             ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred             ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence                             11                                                       344444


Q ss_pred             ecCcccc-cCcccC-----------------------------------------------------CCCCCCCEEEccC
Q 017094          199 LTTKQKS-LQESGI-----------------------------------------------------RSLGSLRCLTISG  224 (377)
Q Consensus       199 l~~~~~~-~~~~~l-----------------------------------------------------~~l~~L~~L~l~~  224 (377)
                      +++|.+. ..|..+                                                     ..+++|+.|++++
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~  362 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ  362 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred             EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence            4444433 222222                                                     4556677777777


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCCc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF  296 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~  296 (377)
                      |......+..++.+++|+.|++++|....        ...++|++|+++++.....+|...+ ..+++|++|++++|...
T Consensus       363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-AWAESILVLNLSSNMLT  441 (562)
T ss_dssp             SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-CCCTTCCEEECCSSCCC
T ss_pred             CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-cCcccCCEEECCCCCCC
Confidence            66655556666677777777777765543        2235677777777654433554322 45567777777776544


Q ss_pred             CCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          297 MALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       297 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      ...|..+.  ++|++|++++| .++.+|..+..+++|++|++++|. ++.++..    .+..+.++..+.+.++++.
T Consensus       442 ~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~----~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          442 GSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDG----VFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             GGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTT----STTTCTTCCCEECCSCCBC
T ss_pred             cchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHH----HHhcCCCCCEEEecCCCcC
Confidence            44443322  67888888877 566778777788888888888874 4443322    2445677777888777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=4.1e-24  Score=210.60  Aligned_cols=266  Identities=17%  Similarity=0.135  Sum_probs=145.8

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCc-CcCCCCcc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPR-KMGNLKHM  146 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~-~~~~l~~L  146 (377)
                      +++++|.+.++.+..  +|..+..+++|++|++++|...   ...+..+..+++|++|++++|.+. .+|. .+..+++|
T Consensus       278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFE---NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCS---BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             cCCCEEeccCCccCC--CChhhcccccCCEEECccCCcC---cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            355555555554442  3444555566666666655432   122234555566666666666544 3332 35556666


Q ss_pred             ceEeccCCCccccc--ChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCc--ccCCCCCCCCEEEc
Q 017094          147 RYLDLSRNSKIKKL--PKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE--SGIRSLGSLRCLTI  222 (377)
Q Consensus       147 ~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l  222 (377)
                      ++|++++|......  +..+..+++|++|++++|......|..+..+++|+.|++++|.+....  ..+..+++|+.|++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            66666654322211  445556666666666665444444555666666666666666655332  23556666666666


Q ss_pred             cCCCCchhhHHhcccCcccchhccccCCCCc---------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCC
Q 017094          223 SGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK---------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDC  293 (377)
Q Consensus       223 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~  293 (377)
                      ++|......+..++.+++|+.|++++|....         ...++|++|+++++......|..+  ..+++|++|++++|
T Consensus       433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF--TSLKMMNHVDLSHN  510 (606)
T ss_dssp             TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSS
T ss_pred             CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh--ccccCCCEEECCCC
Confidence            6665544445555666666666666665432         123456666666654333334444  55666666666666


Q ss_pred             CCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          294 PNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       294 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      ......|+.+..+++| +|++++|......|..+..+++|+.|++++||
T Consensus       511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence            5444455566666666 66666664443334445556666666666665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=205.43  Aligned_cols=109  Identities=16%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             ccceEEecccccccccchhhhhcCCCCccEEeecCCCCC-CCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCee
Q 017094          258 RLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNF-MALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLL  336 (377)
Q Consensus       258 ~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  336 (377)
                      +|++|+++++......|..+  ..+++|++|++++|... ..+|..+..+++|++|++++|......|..+..+++|+.|
T Consensus       422 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          422 NLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             TCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            44444444443333333333  44555555555555432 2355556666666666666664433445556666667777


Q ss_pred             eccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          337 AIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       337 ~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      ++++|. ++..+.    ..+..+.++..+.+.++++.
T Consensus       500 ~l~~n~-l~~~~~----~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          500 NMASNQ-LKSVPD----GIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             ECCSSC-CSCCCT----TTTTTCTTCCEEECCSSCBC
T ss_pred             eCCCCc-CCCCCH----HHhhcccCCcEEEecCCccc
Confidence            776662 333322    12445566777777777665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.3e-24  Score=196.34  Aligned_cols=249  Identities=15%  Similarity=0.150  Sum_probs=190.6

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCC-Cccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRE-SALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ  171 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  171 (377)
                      .+++.|+++++..... ..++..+..+++|++|++++ +.+. .+|..++.+++|++|++++|.....+|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSC-EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCC-cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            5788999988765310 03445688889999999984 7766 6788888999999999987755457888888899999


Q ss_pred             EEeccCccccccCchhhcccccccEeeecCcccc-cCcccCCCCC-CCCEEEccCCCCchhhHHhcccCcccchhccccC
Q 017094          172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKS-LQESGIRSLG-SLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY  249 (377)
Q Consensus       172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  249 (377)
                      +|++++|.....+|..+..+++|++|++++|.+. ..+..++.++ +|+.|++++|......+..+..++ |+.|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            9999988655578888889999999999999887 5667788887 899999998877666677777665 777777766


Q ss_pred             CCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCC
Q 017094          250 DDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHH  329 (377)
Q Consensus       250 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  329 (377)
                      ...                  ...|..+  ..+++|++|++++|......| .+..+++|++|++++|.....+|..+..
T Consensus       208 ~l~------------------~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  266 (313)
T 1ogq_A          208 MLE------------------GDASVLF--GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             EEE------------------ECCGGGC--CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ccc------------------CcCCHHH--hcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhc
Confidence            432                  2455555  788999999999987544444 4788999999999999776688999999


Q ss_pred             CCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCc
Q 017094          330 LTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEI  371 (377)
Q Consensus       330 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~  371 (377)
                      +++|++|++++|+--...+..      ..+..+..+.+.+++
T Consensus       267 l~~L~~L~Ls~N~l~~~ip~~------~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          267 LKFLHSLNVSFNNLCGEIPQG------GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCS------TTGGGSCGGGTCSSS
T ss_pred             CcCCCEEECcCCcccccCCCC------ccccccChHHhcCCC
Confidence            999999999999643343332      235556666665554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1.4e-23  Score=195.62  Aligned_cols=257  Identities=17%  Similarity=0.193  Sum_probs=197.9

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~  147 (377)
                      +++++|.+.++.+.... +..+..+++|++|++++|...   ...+..+..+++|++|++++|.+..+|.. +..+++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             CCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCC---cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            48999999988776543 447889999999999998654   23345578899999999999999988876 58899999


Q ss_pred             eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee-------------------cCcccccCc
Q 017094          148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL-------------------TTKQKSLQE  208 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l-------------------~~~~~~~~~  208 (377)
                      +|++++|......|..+..+++|++|++++|. +..++  +..+++|+.|++                   ++|.+...+
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~  221 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  221 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence            99999875444445668899999999999874 44332  344455555544                   444444332


Q ss_pred             ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCC
Q 017094          209 SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCT  282 (377)
Q Consensus       209 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~  282 (377)
                      .  ...++|+.|++++|.....  ..++.+++|+.|++++|....      ...++|++|+++++ .+..++...  ..+
T Consensus       222 ~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l  294 (390)
T 3o6n_A          222 G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYG--QPI  294 (390)
T ss_dssp             C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSS--SCC
T ss_pred             c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCccc--CCC
Confidence            2  2346899999999876542  568899999999999997655      34568999999997 455677665  778


Q ss_pred             CCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094          283 DTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA  343 (377)
Q Consensus       283 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  343 (377)
                      ++|++|++++|. +..+|..+..+++|++|++++|. ++.++  +..+++|+.|++++|+-
T Consensus       295 ~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          295 PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             TTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred             CCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence            999999999985 66788888899999999999985 55555  67899999999999863

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=3.8e-23  Score=188.29  Aligned_cols=269  Identities=15%  Similarity=0.137  Sum_probs=133.5

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      +.++.|.+.++.+.... +..+..+++|++|++++|...   ...+..+..+++|++|++++|.+..+|..+.  ++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQE  125 (330)
T ss_dssp             TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred             CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCC---eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence            34455555544443321 223444555555555544332   1112334445555555555555544444332  44555


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCcccc--ccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLEL--EELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  226 (377)
                      |++++|......+..+..+++|++|++++|...  ...+..+..+++|++|++++|.+...+..+.  ++|+.|++++|.
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~  203 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK  203 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc
Confidence            555543222122223444555555555544221  1233344455555555555555444433222  445555555544


Q ss_pred             CchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCC
Q 017094          227 DLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL  306 (377)
Q Consensus       227 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l  306 (377)
                      .....+..+..+++|+.|++++|..                  ....+..+  ..+++|++|++++|. +..+|.++..+
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l------------------~~~~~~~~--~~l~~L~~L~L~~N~-l~~lp~~l~~l  262 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSI------------------SAVDNGSL--ANTPHLRELHLNNNK-LVKVPGGLADH  262 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCC------------------CEECTTTG--GGSTTCCEEECCSSC-CSSCCTTTTTC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcC------------------ceeChhhc--cCCCCCCEEECCCCc-CccCChhhccC
Confidence            3333333444444444444444432                  22222344  667888999998875 55788888888


Q ss_pred             ccCceecccCcccCCCCCc-CCC------CCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCC
Q 017094          307 EALETLAIRGCPKLSSLPE-DMH------HLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDE  370 (377)
Q Consensus       307 ~~L~~L~l~~~~~~~~~~~-~l~------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~  370 (377)
                      ++|++|++++|. ++.++. .+.      ..++|+.|++.++|--.....+   ..+.....+..+.+.++
T Consensus       263 ~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~---~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          263 KYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP---STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG---GGGTTCCCGGGEEC---
T ss_pred             CCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCc---cccccccceeEEEeccc
Confidence            899999998874 444442 221      2477888888888743222111   23444566666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.3e-23  Score=206.97  Aligned_cols=241  Identities=17%  Similarity=0.078  Sum_probs=108.4

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCc
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS  169 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~  169 (377)
                      +..+++|+.|+++++.....    + .+..+++|++|++++|.+..+| .+ .+++|++|++++|......  .+..+++
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l----~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~  351 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYL----E-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPS  351 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCC----C-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTT
T ss_pred             cccCCCCCEEEecCccchhh----h-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCC
Confidence            55556666666665543211    1 3455555666666666555555 22 5555555555544333322  2334555


Q ss_pred             ccEEeccCcccccc--CchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhH-HhcccCcccchhcc
Q 017094          170 LQTLDLEGCLELEE--LPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF-EEIEQLSLLRTLLI  246 (377)
Q Consensus       170 L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  246 (377)
                      |++|++++|.....  .|..+..+++|+.|++++|.+...+..+..+++|+.|++++|......+ ..+..+++|+.|++
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  431 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI  431 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence            55555554422111  2444444555555555555444443444444555555554444333222 23444444455544


Q ss_pred             ccCCCCc------cCCCccceEEecccccccc-cchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094          247 HSYDDRK------NTRPRLRRVFIKEITQLLE-LPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK  319 (377)
Q Consensus       247 ~~~~~~~------~~~~~L~~L~l~~~~~~~~-l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  319 (377)
                      ++|....      ...++|++|+++++..... +|..+  ..+++|++|++++|......|.++..+++|++|++++|..
T Consensus       432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            4444322      1123444444444432221 23333  3444444444444433333344444444444444444433


Q ss_pred             CCCCCcCCCCCCCcCeeeccCC
Q 017094          320 LSSLPEDMHHLTTLKLLAIGGC  341 (377)
Q Consensus       320 ~~~~~~~l~~l~~L~~L~l~~c  341 (377)
                      .+..|..+..+++|+.|++++|
T Consensus       510 ~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          510 LFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             SCEEGGGTTTCTTCCEEECTTS
T ss_pred             CCcCHHHccCCCcCCEEECCCC
Confidence            3333444444444444444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=2.9e-23  Score=189.28  Aligned_cols=279  Identities=14%  Similarity=0.176  Sum_probs=155.8

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccce
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMRY  148 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~  148 (377)
                      +++.+.+.++.+..  +|..+  .+++++|++++|...   ...+..+..+++|++|++++|.+..+ |..++.+++|++
T Consensus        34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            45555555544432  22222  256666666666433   12223456666666777766666644 455666666777


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcccc---cCcccCCCCCCCCEEEccC
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKS---LQESGIRSLGSLRCLTISG  224 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~---~~~~~l~~l~~L~~L~l~~  224 (377)
                      |++++| .+..+|..+.  ++|++|++++|. +..+| ..+..+++|+.|++++|.+.   ..+..+..+ +|+.|++++
T Consensus       107 L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          107 LYISKN-HLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             EECCSS-CCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             EECCCC-cCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            776654 4455555443  566666666653 33343 33566666666666666654   223344444 666666666


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMA  298 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~  298 (377)
                      |... .+|..+.  ++|+.|++++|....      ...++|++|+++++......+.++  ..+++|++|++++|. +..
T Consensus       182 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~  255 (332)
T 2ft3_A          182 AKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNK-LSR  255 (332)
T ss_dssp             SBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSC-CCB
T ss_pred             CCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEECCCCc-Cee
Confidence            5532 2333222  466666666665443      223466666666653332223344  677888888888865 557


Q ss_pred             CCccCCCCccCceecccCcccCCCCC-cCCCC------CCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCC
Q 017094          299 LPGSLKDLEALETLAIRGCPKLSSLP-EDMHH------LTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDE  370 (377)
Q Consensus       299 l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~------l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~  370 (377)
                      +|.++..+++|++|++++|. ++.++ ..+..      .++|+.|++.+||.......+   ..+..+.++..+.+.++
T Consensus       256 lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC---
T ss_pred             cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCc---ccccccchhhhhhcccc
Confidence            78778888888888888874 44443 22222      467888888888743222111   12334555666665543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.7e-23  Score=203.19  Aligned_cols=280  Identities=14%  Similarity=0.105  Sum_probs=178.8

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~  147 (377)
                      ..++.+.+.++.+.... +..+..+++|++|++++|...   ...+..+..+++|++|+|++|.+..+|. .++.+++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             CCCSEEEESSCEESEEC-THHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCceEEEeeCCCCCCcC-HHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            46777888777665543 345778888999998887653   2233457788888999998888886654 468888899


Q ss_pred             eEeccCCCcccccChh-hcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094          148 YLDLSRNSKIKKLPKS-ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  226 (377)
                      +|++++| .+..+|.. ++.+++|++|++++|......|..+..+++|+.|++++|.+...  .++.+++|+.|++++|.
T Consensus       127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred             EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCc
Confidence            9999876 55666655 47888899999988755444555688888889999888887765  34556667777666654


Q ss_pred             CchhhHHhcccCc---------------------ccchhccccCCCCc----cCCCccceEEecccccccccchhhhhcC
Q 017094          227 DLEHLFEEIEQLS---------------------LLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCC  281 (377)
Q Consensus       227 ~~~~~~~~l~~l~---------------------~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~  281 (377)
                      ...     +...+                     +|+.|++++|....    ...++|+.|+++++......|..+  ..
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~  276 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF--VK  276 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG--TT
T ss_pred             ccc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHh--cC
Confidence            321     12223                     44445554444332    223456666666654443344444  55


Q ss_pred             CCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCc
Q 017094          282 TDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAH  361 (377)
Q Consensus       282 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~  361 (377)
                      +++|+.|++++|. +..+|..+..+++|+.|++++|. ++.+|..+..+++|+.|++++|+- +..       .+..+..
T Consensus       277 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l-~~~-------~~~~~~~  346 (597)
T 3oja_B          277 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI-VTL-------KLSTHHT  346 (597)
T ss_dssp             CSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC-CCC-------CCCTTCC
T ss_pred             ccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCC-CCc-------ChhhcCC
Confidence            6666666666654 33455555566666666666663 345665556666677777766652 222       1334566


Q ss_pred             cceEEeCCCcc
Q 017094          362 ITQIELDDEII  372 (377)
Q Consensus       362 ~~~~~~~~~~~  372 (377)
                      +..+.+.++++
T Consensus       347 L~~L~l~~N~~  357 (597)
T 3oja_B          347 LKNLTLSHNDW  357 (597)
T ss_dssp             CSEEECCSSCE
T ss_pred             CCEEEeeCCCC
Confidence            77777777665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=2e-23  Score=203.22  Aligned_cols=154  Identities=18%  Similarity=0.230  Sum_probs=95.4

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCcc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHM  146 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L  146 (377)
                      ++.+++|++.++.+.... +..+..+++|++|++++|...   ...+..+..+++|++|++++|.+..++.. ++.+++|
T Consensus        25 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            357777777777665432 445677777777777776543   22234466777777777777777665543 6777777


Q ss_pred             ceEeccCCCccc-ccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCccccc-CcccCCCCCCCCEEEcc
Q 017094          147 RYLDLSRNSKIK-KLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTIS  223 (377)
Q Consensus       147 ~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~  223 (377)
                      ++|++++|.... ..|..++.+++|++|++++|.....+| ..+..+++|++|++++|.+.. .+..++.+++|+.|++.
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            777777653222 335556677777777777765455554 356677777777777766654 33445544444444444


Q ss_pred             CC
Q 017094          224 GC  225 (377)
Q Consensus       224 ~~  225 (377)
                      +|
T Consensus       181 ~n  182 (549)
T 2z81_A          181 LS  182 (549)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=7.7e-23  Score=199.10  Aligned_cols=119  Identities=16%  Similarity=0.208  Sum_probs=90.6

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc--CCcCcCCCCc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV--CPRKMGNLKH  145 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~l~~  145 (377)
                      .+++++|.+.++.+.... +..+..+++|++|++++|...   ...+..+..+++|++|++++|.+..  .|..++.+++
T Consensus        49 l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           49 CANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCC---SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             CCcccEEECCCCCcCccC-hhhccccccCCEEECCCCccC---ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            358999999988776543 457889999999999998654   3344568889999999999999874  4678889999


Q ss_pred             cceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcc
Q 017094          146 MRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRY  190 (377)
Q Consensus       146 L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~  190 (377)
                      |++|++++|...+.+| ..+..+++|++|++++|......|..+..
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  170 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS  170 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence            9999999876566665 46778888888888877544444544433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=4.3e-23  Score=202.78  Aligned_cols=257  Identities=17%  Similarity=0.185  Sum_probs=199.2

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~  147 (377)
                      +++++|.+.++.+.... +..+..+++|++|++++|.+.   ...+..+..+++|++|+|++|.+..+|.. ++.+++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           75 RQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             CCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCC---CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            48999999988776643 457899999999999998654   23345578899999999999999988776 58999999


Q ss_pred             eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc-------------------cccCc
Q 017094          148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ-------------------KSLQE  208 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-------------------~~~~~  208 (377)
                      +|++++|......|..++.+++|++|++++|. +..++  ++.+++|+.|++++|.                   +...+
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~  227 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  227 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence            99999875544556678899999999999874 44443  3445555555555544                   43332


Q ss_pred             ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc------cCCCccceEEecccccccccchhhhhcCC
Q 017094          209 SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQLLELPQWLLQCCT  282 (377)
Q Consensus       209 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~  282 (377)
                      ..  ..++|+.|++++|....  +..++.+++|+.|++++|....      ...++|+.|+|+++ .+..+|...  ..+
T Consensus       228 ~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l  300 (597)
T 3oja_B          228 GP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYG--QPI  300 (597)
T ss_dssp             CS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSS--SCC
T ss_pred             cc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCccc--ccC
Confidence            21  23578889998887654  3668899999999999998755      34568999999997 455677666  778


Q ss_pred             CCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094          283 DTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA  343 (377)
Q Consensus       283 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  343 (377)
                      ++|+.|++++|. +..+|.++..+++|+.|++++|. +..++  +..+++|+.|++++|+-
T Consensus       301 ~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          301 PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             TTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred             CCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence            999999999986 55788888899999999999986 45554  67889999999999973

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=3.9e-22  Score=190.22  Aligned_cols=275  Identities=16%  Similarity=0.198  Sum_probs=117.1

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      ++++|.+.++.+...  + .+..+++|++|++++|......    . +..+++|++|++++|.+..++. +..+++|++|
T Consensus        47 ~l~~L~l~~~~i~~l--~-~~~~l~~L~~L~Ls~n~l~~~~----~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  117 (466)
T 1o6v_A           47 QVTTLQADRLGIKSI--D-GVEYLNNLTQINFSNNQLTDIT----P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  117 (466)
T ss_dssp             TCCEEECCSSCCCCC--T-TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             cccEEecCCCCCccC--c-chhhhcCCCEEECCCCccCCch----h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence            445555544443332  1 2444555555555554432111    1 4445555555555555444433 4445555555


Q ss_pred             eccCCCcccccChhhcCCCcccEEeccCccccccCch--------------------hhcccccccEeeecCcccccCcc
Q 017094          150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPK--------------------DIRYLVILRVFALTTKQKSLQES  209 (377)
Q Consensus       150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~--------------------~l~~l~~L~~L~l~~~~~~~~~~  209 (377)
                      ++++| .+..++. +..+++|++|++++|. +..++.                    .+.++++|+.|++++|.+... .
T Consensus       118 ~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~  193 (466)
T 1o6v_A          118 TLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S  193 (466)
T ss_dssp             ECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G
T ss_pred             ECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h
Confidence            55543 3333332 4444444444444431 222211                    134444455555555444433 2


Q ss_pred             cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc----cCCCccceEEeccccc----------------
Q 017094          210 GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQ----------------  269 (377)
Q Consensus       210 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~----------------  269 (377)
                      .+..+++|+.|++++|......+  ++.+++|+.|++++|....    ...++|++|+++++..                
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  271 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  271 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence            34444445555554443322111  3334444444444443222    1123344444444321                


Q ss_pred             -----ccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCc
Q 017094          270 -----LLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL  344 (377)
Q Consensus       270 -----~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  344 (377)
                           +..++. +  ..+++|+.|++++|. +..++. +..+++|++|++++|. ++.++. +..+++|+.|++++|+ +
T Consensus       272 l~~n~l~~~~~-~--~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l  343 (466)
T 1o6v_A          272 LGANQISNISP-L--AGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNK-V  343 (466)
T ss_dssp             CCSSCCCCCGG-G--TTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSC-C
T ss_pred             CCCCccCcccc-c--cCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCc-c
Confidence                 112222 2  344444555554443 222222 3445555555555553 222222 3455555555555552 2


Q ss_pred             cccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          345 SERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       345 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      +..      ..+..+.++..+.+.++.+.
T Consensus       344 ~~~------~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          344 SDV------SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CCC------GGGTTCTTCCEEECCSSCCC
T ss_pred             CCc------hhhccCCCCCEEeCCCCccC
Confidence            222      12334455666666665553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=2.9e-22  Score=182.49  Aligned_cols=246  Identities=16%  Similarity=0.132  Sum_probs=161.0

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL  199 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  199 (377)
                      +.+++|++++|.+..++. .+..+++|++|++++|......|..++.+++|++|++++| .+..+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence            466667777766665544 5666677777777655333233556666677777777665 3445555443  56677777


Q ss_pred             cCcccccCc-ccCCCCCCCCEEEccCCCCch--hhHHhcccCcccchhccccCCCCc---cCCCccceEEeccccccccc
Q 017094          200 TTKQKSLQE-SGIRSLGSLRCLTISGCRDLE--HLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQLLEL  273 (377)
Q Consensus       200 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~~~l  273 (377)
                      ++|.+...+ ..+..+++|+.|++++|....  ..+..+..+++|+.|++++|....   ..+++|++|+++++......
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence            766666443 345666777777776665432  334456666777777776665443   22357888888877543333


Q ss_pred             chhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCC
Q 017094          274 PQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTG  353 (377)
Q Consensus       274 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~  353 (377)
                      +..+  ..+++|++|++++|......+..+..+++|++|++++| .++.+|..+..+++|++|++++|+ ++..+...-.
T Consensus       209 ~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~  284 (330)
T 1xku_A          209 AASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFC  284 (330)
T ss_dssp             TGGG--TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSS
T ss_pred             HHHh--cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcC
Confidence            5556  78899999999998755555567889999999999998 566899889999999999999985 4444322111


Q ss_pred             -CC-CCCCCccceEEeCCCccC
Q 017094          354 -ED-WPKIAHITQIELDDEIIK  373 (377)
Q Consensus       354 -~~-~~~i~~~~~~~~~~~~~~  373 (377)
                       .. ......+..+.+.++++.
T Consensus       285 ~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          285 PPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSC
T ss_pred             CcccccccccccceEeecCccc
Confidence             00 112356777888887764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=1.4e-21  Score=185.50  Aligned_cols=200  Identities=19%  Similarity=0.146  Sum_probs=130.9

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      +++++|++.++.+...  + .+..+++|++|++++|.+...      .+..+++|++|++++|.+..++  ++.+++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             CCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE------ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            4788888887766653  3 577888888888888765432      1677788888888888877764  777888888


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  228 (377)
                      |++++| .+..+|  ++.+++|++|++++| .+..++  ++.+++|++|++++|...... .++.+++|+.|++++|+..
T Consensus       111 L~L~~N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          111 LNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             EECCSS-CCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCC
T ss_pred             EECCCC-cCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccc
Confidence            888865 455554  677788888888776 344443  667777777777777433221 4666777777777776543


Q ss_pred             hhhHHhcccCcccchhccccCCCCc---cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCC
Q 017094          229 EHLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCP  294 (377)
Q Consensus       229 ~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~  294 (377)
                      . ++  ++.+++|+.|++++|....   ...++|++|+++++. +..+|  +  ..+++|++|++++|.
T Consensus       184 ~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip--~--~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          184 E-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK-LTEID--V--TPLTQLTYFDCSVNP  244 (457)
T ss_dssp             C-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCC--C--TTCTTCSEEECCSSC
T ss_pred             e-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-ccccC--c--cccCCCCEEEeeCCc
Confidence            3 32  5566677777776665443   234566666666653 33344  2  456666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=8.4e-22  Score=187.90  Aligned_cols=276  Identities=18%  Similarity=0.231  Sum_probs=164.8

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      +++++|++.++.+....  + +..+++|+.|++++|......    . +..+++|++|++++|.+..++. +..+++|++
T Consensus        68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~  138 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADIT----P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR  138 (466)
T ss_dssp             TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccCh----h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence            46777777766555432  2 566666666666665443211    1 4555566666666555554433 444555555


Q ss_pred             EeccCCCcccccCh--------------------hhcCCCcccEEeccCccccccCchhhcc------------------
Q 017094          149 LDLSRNSKIKKLPK--------------------SICELQSLQTLDLEGCLELEELPKDIRY------------------  190 (377)
Q Consensus       149 L~l~~~~~~~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~~p~~l~~------------------  190 (377)
                      |++++|. +..++.                    .+..+++|++|++++|. +..++ .+..                  
T Consensus       139 L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~  215 (466)
T 1o6v_A          139 LELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDIT  215 (466)
T ss_dssp             EEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred             EECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCcccccc
Confidence            5554431 221111                    13444555555555542 22222 2444                  


Q ss_pred             ----cccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc----cCCCccceE
Q 017094          191 ----LVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRV  262 (377)
Q Consensus       191 ----l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L  262 (377)
                          +++|+.|++++|.+... ..+..+++|+.|++++|......+  +..+++|+.|++++|....    ...++|++|
T Consensus       216 ~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  292 (466)
T 1o6v_A          216 PLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL  292 (466)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence                44555555555544443 245556666666666655433222  6667777777777776544    345689999


Q ss_pred             EecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          263 FIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       263 ~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      +++++. +..++. +  ..+++|+.|++++|... .++. +..+++|++|++++| .++.++ .+..+++|+.|++++|+
T Consensus       293 ~L~~n~-l~~~~~-~--~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          293 ELNENQ-LEDISP-I--SNLKNLTYLTLYFNNIS-DISP-VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             ECCSSC-CSCCGG-G--GGCTTCSEEECCSSCCS-CCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             EcCCCc-ccCchh-h--cCCCCCCEEECcCCcCC-Cchh-hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence            999875 444544 3  78899999999998644 4433 678999999999998 455554 57899999999999996


Q ss_pred             CccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094          343 ALSERCKPPTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       343 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      - ++...      +..+..+..+.+.++.+..
T Consensus       365 l-~~~~~------~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          365 I-SDLTP------LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             C-CBCGG------GTTCTTCCEEECCCEEEEC
T ss_pred             c-Cccch------hhcCCCCCEEeccCCcccC
Confidence            4 33321      3346677777777766543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=197.85  Aligned_cols=223  Identities=18%  Similarity=0.077  Sum_probs=162.0

Q ss_pred             ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChh--------------------hcCCCcccEEeccCc
Q 017094          119 KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKS--------------------ICELQSLQTLDLEGC  178 (377)
Q Consensus       119 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~--------------------~~~l~~L~~L~l~~~  178 (377)
                      .+++|+.|+++++.+..+|..+..+ +|++|++++| .+..+|..                    ...+++|++|++++|
T Consensus       280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n  357 (570)
T 2z63_A          280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN  357 (570)
T ss_dssp             GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESC-BCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred             CcCcccEEEecCccchhhhhhhccC-CccEEeeccC-cccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence            3455566666666655555555555 5555555544 22333321                    035567777777766


Q ss_pred             ccccc--CchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhH-HhcccCcccchhccccCCCCc--
Q 017094          179 LELEE--LPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF-EEIEQLSLLRTLLIHSYDDRK--  253 (377)
Q Consensus       179 ~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~--  253 (377)
                      .....  .|..+..+++|++|++++|.+...+..+..+++|+.|++++|......+ ..+..+++|+.|++++|....  
T Consensus       358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  437 (570)
T 2z63_A          358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  437 (570)
T ss_dssp             CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence            32222  2567788888999999988888776668889999999999887554433 357789999999999987654  


Q ss_pred             ----cCCCccceEEecccccc-cccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCC
Q 017094          254 ----NTRPRLRRVFIKEITQL-LELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMH  328 (377)
Q Consensus       254 ----~~~~~L~~L~l~~~~~~-~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  328 (377)
                          ...++|++|+++++... ..+|..+  ..+++|++|++++|......|.++..+++|++|++++|......+..+.
T Consensus       438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             hhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence                33568999999998754 3577776  8899999999999986666688899999999999999965444456688


Q ss_pred             CCCCcCeeeccCCCCcc
Q 017094          329 HLTTLKLLAIGGCPALS  345 (377)
Q Consensus       329 ~l~~L~~L~l~~c~~l~  345 (377)
                      .+++|+.|++++|+--.
T Consensus       516 ~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          516 RLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TCTTCCEEECCSSCBCC
T ss_pred             cccCCcEEEecCCcccC
Confidence            99999999999987443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=7.7e-22  Score=190.78  Aligned_cols=150  Identities=17%  Similarity=0.141  Sum_probs=125.9

Q ss_pred             cccccccEeeecCccccc-CcccCCCCCCCCEEEccCCCCch--hhHHhcccCcccchhccccCCCCc-------cCCCc
Q 017094          189 RYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTISGCRDLE--HLFEEIEQLSLLRTLLIHSYDDRK-------NTRPR  258 (377)
Q Consensus       189 ~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~  258 (377)
                      ..+++|++|++++|.+.. .+..++.+++|+.|++++|+...  .++..++.+++|+.|++++|....       ...++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            578899999999999886 56788999999999999998765  677789999999999999998765       22468


Q ss_pred             cceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcC-CCCCCCcCeee
Q 017094          259 LRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPED-MHHLTTLKLLA  337 (377)
Q Consensus       259 L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~  337 (377)
                      |++|+++++......|..+    .++|++|++++|. +..+|..+..+++|++|++++| .++.+|.. +..+++|+.|+
T Consensus       401 L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSC----CTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECcCCCCCcchhhhh----cccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence            9999999986555555433    2799999999986 5689988889999999999998 56678876 88999999999


Q ss_pred             ccCCCCc
Q 017094          338 IGGCPAL  344 (377)
Q Consensus       338 l~~c~~l  344 (377)
                      +++|+--
T Consensus       475 l~~N~~~  481 (520)
T 2z7x_B          475 LHTNPWD  481 (520)
T ss_dssp             CCSSCBC
T ss_pred             CcCCCCc
Confidence            9999744

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=4.8e-22  Score=194.03  Aligned_cols=262  Identities=18%  Similarity=0.214  Sum_probs=195.5

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC--cCcCCCCcc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP--RKMGNLKHM  146 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~~~~~l~~L  146 (377)
                      +++++|.+.++.+.... +..+..+++|++|++++|....    ++..  .+++|++|++++|.+..++  ..++.+++|
T Consensus        76 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~----lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L  148 (562)
T 3a79_B           76 SELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQN----ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL  148 (562)
T ss_dssp             TTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCCCE----ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred             CCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcCCc----cCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence            58999999988777643 5578889999999999887642    2222  6788888888888887653  678888888


Q ss_pred             ceEeccCCCccc-------------------------ccChhhcC--------------------------CC-------
Q 017094          147 RYLDLSRNSKIK-------------------------KLPKSICE--------------------------LQ-------  168 (377)
Q Consensus       147 ~~L~l~~~~~~~-------------------------~l~~~~~~--------------------------l~-------  168 (377)
                      ++|++++|....                         ..|..+..                          ++       
T Consensus       149 ~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l  228 (562)
T 3a79_B          149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI  228 (562)
T ss_dssp             CEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred             cEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecc
Confidence            888887653211                         01111111                          11       


Q ss_pred             ------------------------------------------------cccEEeccCccccccCchhh------------
Q 017094          169 ------------------------------------------------SLQTLDLEGCLELEELPKDI------------  188 (377)
Q Consensus       169 ------------------------------------------------~L~~L~l~~~~~~~~~p~~l------------  188 (377)
                                                                      +|++|++++|...+.+|..+            
T Consensus       229 ~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~  308 (562)
T 3a79_B          229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM  308 (562)
T ss_dssp             ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred             cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence                                                            45555555543323444433            


Q ss_pred             -----------------------------------------cccccccEeeecCccccc-CcccCCCCCCCCEEEccCCC
Q 017094          189 -----------------------------------------RYLVILRVFALTTKQKSL-QESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       189 -----------------------------------------~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~  226 (377)
                                                               ..+++|++|++++|.+.. .+..++.+++|+.|++++|+
T Consensus       309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred             hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence                                                     567899999999999886 45788999999999999988


Q ss_pred             Cch--hhHHhcccCcccchhccccCCCCc-------cCCCccceEEecccccccccchhhhhcCC-CCccEEeecCCCCC
Q 017094          227 DLE--HLFEEIEQLSLLRTLLIHSYDDRK-------NTRPRLRRVFIKEITQLLELPQWLLQCCT-DTLHTLVIGDCPNF  296 (377)
Q Consensus       227 ~~~--~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~  296 (377)
                      ...  .++..++.+++|+.|++++|....       ...++|++|+++++......|.     .+ ++|++|++++|. +
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N~-l  462 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNNR-I  462 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSSC-C
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCCc-C
Confidence            654  566778999999999999998754       2246899999999865444443     33 699999999985 6


Q ss_pred             CCCCccCCCCccCceecccCcccCCCCCcC-CCCCCCcCeeeccCCCCc
Q 017094          297 MALPGSLKDLEALETLAIRGCPKLSSLPED-MHHLTTLKLLAIGGCPAL  344 (377)
Q Consensus       297 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~c~~l  344 (377)
                      ..+|..+..+++|++|++++|. ++.+|.. +..+++|+.|++++|+--
T Consensus       463 ~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          463 MSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             cccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            7899888899999999999984 5678876 889999999999999743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=8.9e-22  Score=200.83  Aligned_cols=270  Identities=16%  Similarity=0.074  Sum_probs=205.8

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc-CCcC--cCCCC
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV-CPRK--MGNLK  144 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~~--~~~l~  144 (377)
                      -+++++|++.++.....--+..+.++++|++|++++|...   ...+..+..+++|++|+|++|.+.. .|..  ++.++
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY---FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC---EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc---ccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            3689999999885433212567999999999999998654   2345678899999999999999874 4544  89999


Q ss_pred             ccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchhhccc--ccccEeeecCcccccC-cccCCCCCC----
Q 017094          145 HMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKDIRYL--VILRVFALTTKQKSLQ-ESGIRSLGS----  216 (377)
Q Consensus       145 ~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l--~~L~~L~l~~~~~~~~-~~~l~~l~~----  216 (377)
                      +|++|++++|...... +..++++++|++|++++|......+..+..+  ++|+.|++++|.+... +..++.+++    
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  203 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN  203 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence            9999999987544332 3578999999999999986656667778777  8999999999988753 345555554    


Q ss_pred             --CCEEEccCCCCchhhHHhc------------------------------------cc--CcccchhccccCCCCc---
Q 017094          217 --LRCLTISGCRDLEHLFEEI------------------------------------EQ--LSLLRTLLIHSYDDRK---  253 (377)
Q Consensus       217 --L~~L~l~~~~~~~~~~~~l------------------------------------~~--l~~L~~L~l~~~~~~~---  253 (377)
                        |+.|++++|......+..+                                    ..  .++|+.|++++|....   
T Consensus       204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~  283 (844)
T 3j0a_A          204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS  283 (844)
T ss_dssp             CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred             CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence              9999999885433222211                                    11  2678999998887544   


Q ss_pred             ---cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCC
Q 017094          254 ---NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHL  330 (377)
Q Consensus       254 ---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  330 (377)
                         ...++|+.|+++++......+..+  ..+++|++|++++|......+..+..+++|++|++++|......+..+..+
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence               335689999999986554445555  788999999999987655567889999999999999985433334567889


Q ss_pred             CCcCeeeccCCC
Q 017094          331 TTLKLLAIGGCP  342 (377)
Q Consensus       331 ~~L~~L~l~~c~  342 (377)
                      ++|+.|++++|.
T Consensus       362 ~~L~~L~Ls~N~  373 (844)
T 3j0a_A          362 EKLQTLDLRDNA  373 (844)
T ss_dssp             CCCCEEEEETCC
T ss_pred             CCCCEEECCCCC
Confidence            999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=4.2e-22  Score=181.51  Aligned_cols=265  Identities=19%  Similarity=0.155  Sum_probs=203.2

Q ss_pred             CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEE
Q 017094           95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTL  173 (377)
Q Consensus        95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L  173 (377)
                      +++.++++++.....    +..+  .++|++|++++|.+..++ ..+..+++|++|++++|......|..++.+++|++|
T Consensus        34 ~l~~l~~~~~~l~~i----p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAV----PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCSSC----CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCCCcccc----CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            688899888755321    2212  368999999999998774 579999999999999875443447789999999999


Q ss_pred             eccCccccccCchhhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccCCCCch--hhHHhcccCcccchhccccCC
Q 017094          174 DLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISGCRDLE--HLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       174 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      ++++| .+..+|..+.  ++|++|++++|.+...+. .+..+++|+.|++++|....  ..+..+..+ +|+.|++++|.
T Consensus       108 ~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          108 YISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             ECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             ECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            99997 5667877665  899999999999987754 58899999999999988642  445566667 99999999987


Q ss_pred             CCcc---CCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCC
Q 017094          251 DRKN---TRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM  327 (377)
Q Consensus       251 ~~~~---~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l  327 (377)
                      ....   .+++|++|+++++......+..+  ..+++|++|++++|......+.++..+++|++|++++| .++.+|..+
T Consensus       184 l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l  260 (332)
T 2ft3_A          184 LTGIPKDLPETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL  260 (332)
T ss_dssp             CSSCCSSSCSSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTG
T ss_pred             CCccCccccCCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhh
Confidence            6552   23689999999985443333455  78899999999998755555567889999999999998 566899889


Q ss_pred             CCCCCcCeeeccCCCCccccCCCCCC-CCC-CCCCccceEEeCCCccC
Q 017094          328 HHLTTLKLLAIGGCPALSERCKPPTG-EDW-PKIAHITQIELDDEIIK  373 (377)
Q Consensus       328 ~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~-~~i~~~~~~~~~~~~~~  373 (377)
                      ..+++|++|++++|+ ++..+...-. ..+ .....+..+.+.++++.
T Consensus       261 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccc
Confidence            999999999999985 4444332211 111 11355778888887765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=5.1e-22  Score=178.88  Aligned_cols=225  Identities=19%  Similarity=0.205  Sum_probs=129.8

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC---CcCcCCCCccceEeccCCCcccccChhhcCCCcc
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC---PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL  170 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L  170 (377)
                      +++++|++++|...   ......+..+++|++|++++|.+...   +..+..+++|++|++++| .+..+|..+..+++|
T Consensus        28 ~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTC
T ss_pred             CCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCC
Confidence            45556665555432   11112345555566666655555422   334444555566666544 344455555555556


Q ss_pred             cEEeccCccccccCc--hhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCch-hhHHhcccCcccchhcc
Q 017094          171 QTLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLI  246 (377)
Q Consensus       171 ~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l  246 (377)
                      ++|++++| .+..++  ..+..+++|++|++++|.+... +..+..+++|++|++++|.... ..+..+..+++|+.|++
T Consensus       104 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          104 EHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             CEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence            66665554 233332  2455555555555555555433 2334555555555555554332 23344445555555555


Q ss_pred             ccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcC
Q 017094          247 HSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPED  326 (377)
Q Consensus       247 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  326 (377)
                      ++|..                  ....|..+  ..+++|++|++++|......+..+..+++|++|++++|......|..
T Consensus       183 s~n~l------------------~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          183 SQCQL------------------EQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             TTSCC------------------CEECTTTT--TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             CCCCc------------------CCcCHHHh--cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            54432                  22334455  67889999999998754444446788999999999999766667777


Q ss_pred             CCCCC-CcCeeeccCCCC
Q 017094          327 MHHLT-TLKLLAIGGCPA  343 (377)
Q Consensus       327 l~~l~-~L~~L~l~~c~~  343 (377)
                      +..++ +|+.|++++|+-
T Consensus       243 ~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCCCCTTCCEEECTTCCE
T ss_pred             HHhhhccCCEEEccCCCe
Confidence            88874 899999999863

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.4e-21  Score=185.52  Aligned_cols=227  Identities=15%  Similarity=0.111  Sum_probs=155.7

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      +++++|.+.++.+....    +..+++|++|++++|.+...      .+..+++|++|++++|.+..+|  ++.+++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~  131 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY  131 (457)
T ss_dssp             TTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             CCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCcee------ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence            58889999888776642    77888999999998876532      1778889999999999888775  788888999


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  228 (377)
                      |++++| .+..++  ++.+++|++|++++|..++.+  .+..+++|+.|++++|.++..+  +..+++|+.|++++|...
T Consensus       132 L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          132 LNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             EECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred             EECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence            999876 455554  677888888888887666665  3677788888888888777763  777777888888777644


Q ss_pred             hhhHHhcccCcccchhccccCCCCc---cCCCccceEEecccccccccchhhhhcCCCCccE----------EeecCCCC
Q 017094          229 EHLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT----------LVIGDCPN  295 (377)
Q Consensus       229 ~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~----------L~l~~~~~  295 (377)
                      ..   .++.+++|+.|++++|....   ...++|+.|+++++. +..+|.    ..+++|+.          |++++|..
T Consensus       205 ~~---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~-l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~  276 (457)
T 3bz5_A          205 KL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP-LTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQ  276 (457)
T ss_dssp             CC---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred             ee---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc-CCCcCH----HHCCCCCEEeccCCCCCEEECCCCcc
Confidence            32   36677777777777776544   234567777777663 223331    33444443          34444433


Q ss_pred             CCCCCccCCCCccCceecccCcccCCCCC
Q 017094          296 FMALPGSLKDLEALETLAIRGCPKLSSLP  324 (377)
Q Consensus       296 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~  324 (377)
                      ...+|  +..+++|+.|++++|..++.+|
T Consensus       277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          277 LIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             CCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CCccc--ccccccCCEEECCCCcccceec
Confidence            33333  3456777777777776555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=3.4e-21  Score=192.32  Aligned_cols=267  Identities=17%  Similarity=0.137  Sum_probs=171.1

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~  147 (377)
                      +++++|.+.++.+.... +..+.++++|++|++++|...   ......+..+++|++|++++|.+..++ ..++.+++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             TTCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             CcCcEEECCCCccCccC-HHHHhcccCcCEEECCCCccC---ccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            58999999988776542 567889999999999988654   222335788999999999999988775 5788999999


Q ss_pred             eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhc--ccccccEeeecCcccccCc-ccCCCC----------
Q 017094          148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIR--YLVILRVFALTTKQKSLQE-SGIRSL----------  214 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~--~l~~L~~L~l~~~~~~~~~-~~l~~l----------  214 (377)
                      +|++++|......|..++++++|++|++++|......+..+.  .+++|+.|++++|.+...+ ..+..+          
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence            999998755555566788899999999998744333344443  4578899999888776542 223222          


Q ss_pred             -----------------CCCCEEEccCCCCchhhHHhcccCcc--cchhccccCCCCc------cCCCccceEEeccccc
Q 017094          215 -----------------GSLRCLTISGCRDLEHLFEEIEQLSL--LRTLLIHSYDDRK------NTRPRLRRVFIKEITQ  269 (377)
Q Consensus       215 -----------------~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~  269 (377)
                                       ++|+.|++++|......+..+..++.  |+.|++++|....      ...++|++|+++++..
T Consensus       205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence                             44556666665544444444555543  7777777765433      2235677777776644


Q ss_pred             ccccchhhhhcCCCCccEEeecCCCCCC-----CCCc----cCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccC
Q 017094          270 LLELPQWLLQCCTDTLHTLVIGDCPNFM-----ALPG----SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGG  340 (377)
Q Consensus       270 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~-----~l~~----~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  340 (377)
                      ....|..+  ..+++|++|++++|....     .+|.    .+..+++|++|++++|......+..+..+++|++|++++
T Consensus       285 ~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  362 (680)
T 1ziw_A          285 QHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN  362 (680)
T ss_dssp             SEECTTTT--TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred             CccChhhh--cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence            43344444  555666666665542111     2222    344555666666665543333334455555555555555


Q ss_pred             C
Q 017094          341 C  341 (377)
Q Consensus       341 c  341 (377)
                      |
T Consensus       363 n  363 (680)
T 1ziw_A          363 S  363 (680)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=5e-22  Score=178.89  Aligned_cols=231  Identities=16%  Similarity=0.146  Sum_probs=186.2

Q ss_pred             CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCcc
Q 017094           67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM  146 (377)
Q Consensus        67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L  146 (377)
                      .++.+++|.+.++.+.... ...+..+++|++|++++|..... ...+..+..+++|++|++++|.+..+|..+..+++|
T Consensus        26 ~~~~l~~L~L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L  103 (306)
T 2z66_A           26 IPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL  103 (306)
T ss_dssp             CCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCEE-EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred             CCCCCCEEECCCCccCccC-HhHhhccccCCEEECCCCccCcc-cCcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence            4568999999998877533 33578999999999999875421 111233557899999999999999998889999999


Q ss_pred             ceEeccCCCcccccC--hhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc--CcccCCCCCCCCEEEc
Q 017094          147 RYLDLSRNSKIKKLP--KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL--QESGIRSLGSLRCLTI  222 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l  222 (377)
                      ++|++++| .+..++  ..+..+++|++|++++|......+..+..+++|+.|++++|.+..  .+..+..+++|+.|++
T Consensus       104 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          104 EHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             CEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence            99999976 555555  468899999999999986666667778999999999999999875  5678899999999999


Q ss_pred             cCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccch-hhhhcCCCCccEEeecCCCCCCCCCc
Q 017094          223 SGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQ-WLLQCCTDTLHTLVIGDCPNFMALPG  301 (377)
Q Consensus       223 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~~l~~  301 (377)
                      ++|......+..+..+++|+.|++++|....                   ++. .+  ..+++|++|++++|......+.
T Consensus       183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------------~~~~~~--~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-------------------LDTFPY--KCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCSB-------------------CCSGGG--TTCTTCCEEECTTSCCCBCSSS
T ss_pred             CCCCcCCcCHHHhcCCCCCCEEECCCCccCc-------------------cChhhc--cCcccCCEeECCCCCCcccCHH
Confidence            9998766556778888999999998876432                   222 33  6789999999999987777777


Q ss_pred             cCCCCc-cCceecccCcccCC
Q 017094          302 SLKDLE-ALETLAIRGCPKLS  321 (377)
Q Consensus       302 ~~~~l~-~L~~L~l~~~~~~~  321 (377)
                      .+..++ +|++|++++|+...
T Consensus       242 ~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          242 ELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             SCCCCCTTCCEEECTTCCEEC
T ss_pred             HHHhhhccCCEEEccCCCeec
Confidence            888885 99999999986544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=2.3e-21  Score=184.16  Aligned_cols=218  Identities=23%  Similarity=0.222  Sum_probs=129.8

Q ss_pred             CcccEEEeCCCccccC-CcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCch-hhcccccccEee
Q 017094          121 QFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFA  198 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~  198 (377)
                      +++++|+|++|.+..+ +..+..+++|++|++++|......+..+..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence            3555555555555543 3445555555555555442222223445555555555555542 333332 245555555555


Q ss_pred             ecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHH-hcccCcccchhccccCCCCc----cCCCccceEEecccccccc
Q 017094          199 LTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFE-EIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLLE  272 (377)
Q Consensus       199 l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~~  272 (377)
                      +++|.+...+ ..+..+++|+.|++++|+....++. .+..+++|+.|++++|....    ...++|++|+++++.....
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence            5555555432 2445555555555555444443332 24455555555555554433    2234666666666544434


Q ss_pred             cchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeeeccCCC
Q 017094          273 LPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       273 l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~c~  342 (377)
                      .|..+  ..+++|++|++++|......+..+..+++|+.|+|++|. ++.+| ..+..+++|+.|++.+||
T Consensus       234 ~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          234 RPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             Ccccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence            45556  788999999999987665667778899999999999985 45554 556789999999998886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=3.4e-21  Score=182.31  Aligned_cols=219  Identities=21%  Similarity=0.224  Sum_probs=124.5

Q ss_pred             CcccEEEeCCCccccCC-cCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCch-hhcccccccEe
Q 017094          121 QFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L  197 (377)
                      .+++.|+|++|.+..++ ..+..+++|++|++++|. +..+ +..+..+++|++|++++| .+..+|. .+..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence            34555555555554332 345555555555555442 2222 234445555555555554 2333332 34555555555


Q ss_pred             eecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHH-hcccCcccchhccccCCCCc----cCCCccceEEeccccccc
Q 017094          198 ALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFE-EIEQLSLLRTLLIHSYDDRK----NTRPRLRRVFIKEITQLL  271 (377)
Q Consensus       198 ~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~l~~~~~~~  271 (377)
                      ++++|.+...+ ..+..+++|+.|++++|+....++. .+..+++|+.|++++|....    ...++|++|+++++....
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence            55555554332 2445555555555555444333332 34455555555555554333    223456666666653332


Q ss_pred             ccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094          272 ELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA  343 (377)
Q Consensus       272 ~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  343 (377)
                      ..|..+  ..+++|++|++++|......+..+..+++|++|+|++|......+..+..+++|+.|++.+||-
T Consensus       222 ~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          222 IRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             ECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             cChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            334455  7788999999999876555677788899999999999854433335567889999999988863

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=7e-22  Score=181.62  Aligned_cols=250  Identities=18%  Similarity=0.209  Sum_probs=127.6

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~  147 (377)
                      +.+++|.+.++.+.... +..+.++++|++|++++|...   ...+..+..+++|++|++++|.+..+|.. ++.+++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            45666666655554422 224556666666666655432   11223355556666666666666555543 55566666


Q ss_pred             eEeccCCCcccccCh--hhcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccC-cccCCCCCCCCEEEcc
Q 017094          148 YLDLSRNSKIKKLPK--SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTIS  223 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~  223 (377)
                      +|++++| .+..+|.  .+..+++|++|++++|..+..+ +..+..+++|+.|++++|.+... +..+..+++|++|+++
T Consensus       128 ~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          128 FLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             EEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            6666654 3444444  4555666666666655333333 34455666666666666655533 3455556666666666


Q ss_pred             CCCCchhhHHh-cccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCC----C
Q 017094          224 GCRDLEHLFEE-IEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM----A  298 (377)
Q Consensus       224 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~----~  298 (377)
                      +|.. ..++.. +..+++|+.|++++|........              .++. .  ...+.++.++++++....    .
T Consensus       207 ~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~l~~-~--~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          207 MKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS--------------ELST-G--ETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             CSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             CCcc-ccchhhhhhhcccccEEECCCCcccccccc--------------cccc-c--cccchhhccccccccccCcchhh
Confidence            6553 233322 23455666666655544331110              0000 0  223445555555543211    2


Q ss_pred             CCccCCCCccCceecccCcccCCCCCcCC-CCCCCcCeeeccCCC
Q 017094          299 LPGSLKDLEALETLAIRGCPKLSSLPEDM-HHLTTLKLLAIGGCP  342 (377)
Q Consensus       299 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~c~  342 (377)
                      +|.++..+++|++|++++| .++.+|..+ ..+++|++|++++|+
T Consensus       269 l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            4445556666666666665 334555443 566666666666664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=8.6e-22  Score=181.02  Aligned_cols=245  Identities=14%  Similarity=0.147  Sum_probs=152.3

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchh-hcccccccEee
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFA  198 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~  198 (377)
                      ++|++|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence            366666666666665544 5666666777777655322223445666666777777665 34444443 56666677777


Q ss_pred             ecCcccccCcc--cCCCCCCCCEEEccCCCCchhh-HHhcccCcccchhccccCCCCc------cCCCccceEEeccccc
Q 017094          199 LTTKQKSLQES--GIRSLGSLRCLTISGCRDLEHL-FEEIEQLSLLRTLLIHSYDDRK------NTRPRLRRVFIKEITQ  269 (377)
Q Consensus       199 l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~------~~~~~L~~L~l~~~~~  269 (377)
                      +++|.+...+.  .+..+++|+.|++++|+....+ +..++.+++|+.|++++|....      ...++|++|+++++. 
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-  209 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-  209 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-
Confidence            77666665543  4566667777777666433333 3445666667777766665433      223466667776654 


Q ss_pred             ccccchhhhhcCCCCccEEeecCCCCCCCCCcc---CCCCccCceecccCcccCC----CCCcCCCCCCCcCeeeccCCC
Q 017094          270 LLELPQWLLQCCTDTLHTLVIGDCPNFMALPGS---LKDLEALETLAIRGCPKLS----SLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       270 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~---~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      +..++...+ ..+++|++|++++|......+..   ......++.+++.++....    .+|..+..+++|+.|++++|.
T Consensus       210 l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          210 HILLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             STTHHHHHH-HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             cccchhhhh-hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            345665443 45799999999998643322222   2246677888887764322    456677889999999999994


Q ss_pred             CccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          343 ALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       343 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                       ++..+..    -+..+.++..+.+.++++.
T Consensus       289 -l~~i~~~----~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          289 -LKSVPDG----IFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             -CCCCCTT----TTTTCTTCCEEECCSSCBC
T ss_pred             -CCccCHH----HHhcCCCCCEEEeeCCCcc
Confidence             4444332    1356788899999998876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=2.5e-21  Score=183.86  Aligned_cols=226  Identities=21%  Similarity=0.184  Sum_probs=160.1

Q ss_pred             CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCc
Q 017094           67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKH  145 (377)
Q Consensus        67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~  145 (377)
                      .++.+++|.+.++.+.... +..|..+++|+.|++++|.+.   ...+..+..+++|++|+|++|.+..+|. .+..+++
T Consensus        73 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  148 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK  148 (452)
T ss_dssp             CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred             CCCCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence            4457888888877766543 456778888888888877553   2223457778888888888888877654 3777888


Q ss_pred             cceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEeeecCcccccCcccCCCCCCCCEEEcc
Q 017094          146 MRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTIS  223 (377)
Q Consensus       146 L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~  223 (377)
                      |++|++++| .+..+|. .+..+++|++|++++|..+..++. .+..+++|++|++++|.+... +.+..+++|+.|+++
T Consensus       149 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          149 LRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMS  226 (452)
T ss_dssp             CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECT
T ss_pred             CCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECc
Confidence            888888866 4444443 577788888888887766666654 467788888888888887766 367778888888888


Q ss_pred             CCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094          224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSL  303 (377)
Q Consensus       224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  303 (377)
                      +|......+..+..+++|+.|++++|....                  ..+..+  ..+++|+.|++++|......+..+
T Consensus       227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSL------------------IERNAF--DGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             TSCCSEECGGGGTTCTTCCEEECTTSCCCE------------------ECTTTT--TTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             CCcCcccCcccccCccCCCEEEeCCCcCce------------------ECHHHh--cCCCCCCEEECCCCcCCccChHHh
Confidence            877666556677777788888877765432                  223333  667888888888875433333456


Q ss_pred             CCCccCceecccCcc
Q 017094          304 KDLEALETLAIRGCP  318 (377)
Q Consensus       304 ~~l~~L~~L~l~~~~  318 (377)
                      ..+++|+.|++++|+
T Consensus       287 ~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          287 TPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccccCCCEEEccCCC
Confidence            778888888888875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=3.2e-21  Score=182.53  Aligned_cols=227  Identities=19%  Similarity=0.156  Sum_probs=168.0

Q ss_pred             CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCc
Q 017094           67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKH  145 (377)
Q Consensus        67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~  145 (377)
                      .++.++.|.+.++.+.... +..+..+++|++|++++|....   ..+..+..+++|++|+|++|.+..++. .+..+++
T Consensus        62 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK  137 (440)
T ss_dssp             CCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSCCCE---ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred             CCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCcCCc---cChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence            4467888888888776653 4568888999999998886542   223457788899999999998887765 5788899


Q ss_pred             cceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCch-hhcccccccEeeecCcccccCcccCCCCCCCCEEEcc
Q 017094          146 MRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTIS  223 (377)
Q Consensus       146 L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~  223 (377)
                      |++|++++| .+..++ ..+..+++|++|++++|..+..++. .+..+++|++|++++|.++..+ .+..+++|+.|+++
T Consensus       138 L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls  215 (440)
T 3zyj_A          138 LKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLS  215 (440)
T ss_dssp             CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECT
T ss_pred             CceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECC
Confidence            999999876 455544 4677888999999988767776655 5788889999999998888774 68888899999999


Q ss_pred             CCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094          224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSL  303 (377)
Q Consensus       224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  303 (377)
                      +|......+..+..+++|+.|++++|....                  ..+..+  ..+++|+.|++++|.....-+..+
T Consensus       216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQV------------------IERNAF--DNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCE------------------ECTTSS--TTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CCccCccChhhhccCccCCEEECCCCceeE------------------EChhhh--cCCCCCCEEECCCCCCCccChhHh
Confidence            887666556677888888888888775432                  112223  566778888888765433334456


Q ss_pred             CCCccCceecccCccc
Q 017094          304 KDLEALETLAIRGCPK  319 (377)
Q Consensus       304 ~~l~~L~~L~l~~~~~  319 (377)
                      ..+++|+.|++++|+.
T Consensus       276 ~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPW  291 (440)
T ss_dssp             SSCTTCCEEECCSSCE
T ss_pred             ccccCCCEEEcCCCCc
Confidence            6778888888877753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=8.3e-22  Score=177.98  Aligned_cols=250  Identities=15%  Similarity=0.150  Sum_probs=151.1

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc--cCCcCcC-------CCCccceEeccCCCccccc
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE--VCPRKMG-------NLKHMRYLDLSRNSKIKKL  160 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~~~l  160 (377)
                      +...++|+.|++++|.. .....    +...  |+.|+++++.+.  .+|..+.       .+++|++|++++|.....+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~----~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  111 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQ----FTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA  111 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHH----HHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred             EccCCCceeEeeccccc-ccHHH----HHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence            34455666666666654 11111    2211  777778777774  3455444       6788888888876544466


Q ss_pred             Chhh--cCCCcccEEeccCccccccCchhhccc-----ccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchh--
Q 017094          161 PKSI--CELQSLQTLDLEGCLELEELPKDIRYL-----VILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEH--  230 (377)
Q Consensus       161 ~~~~--~~l~~L~~L~l~~~~~~~~~p~~l~~l-----~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--  230 (377)
                      |..+  ..+++|++|++++|. +...|..+..+     ++|++|++++|.+...+ ..++.+++|+.|++++|+..+.  
T Consensus       112 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          112 PPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             HHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            7665  778888888888864 44447666666     78888888888887665 6778888888888888876544  


Q ss_pred             hHHhc--ccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCCc
Q 017094          231 LFEEI--EQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLE  307 (377)
Q Consensus       231 ~~~~l--~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~  307 (377)
                      .+..+  +.+++|+.|++++|....                +..++..++ ..+++|++|++++|......| ..+..++
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~----------------~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMET----------------PSGVCSALA-AARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCC----------------HHHHHHHHH-HTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcc----------------hHHHHHHHH-hcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            34444  677778888877765431                112222221 345666666666655333332 2334556


Q ss_pred             cCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094          308 ALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       308 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      +|++|++++|. ++.+|..+.  ++|++|++++|. ++..+.      +..+.+++.+.+.++.++.
T Consensus       254 ~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~------~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          254 QLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS------PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC------TTTSCEEEEEECTTCTTTC
T ss_pred             CCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh------HhhCCCCCEEeccCCCCCC
Confidence            66666666653 345565544  566666666663 333211      3345556666666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=1.1e-22  Score=184.23  Aligned_cols=244  Identities=14%  Similarity=0.088  Sum_probs=159.2

Q ss_pred             hhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCC
Q 017094           88 SLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICEL  167 (377)
Q Consensus        88 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l  167 (377)
                      ..+..+++|++|++++|...   ...+..+..+++|++|++++|.+...++ +..+++|++|++++| .+..++    ..
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~   98 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VG   98 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----EC
T ss_pred             HHhccCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CC
Confidence            34455567777777776543   2233456777777777777777765543 667777777777765 444443    23


Q ss_pred             CcccEEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhc-ccCcccchhc
Q 017094          168 QSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEI-EQLSLLRTLL  245 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~  245 (377)
                      ++|++|++++|. +..++.  ..+++|+.|++++|.++..+ ..+..+++|+.|++++|......+..+ ..+++|+.|+
T Consensus        99 ~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            677777777763 333332  23566777777777776553 356667777777777776554444444 3567777777


Q ss_pred             cccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC-
Q 017094          246 IHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL-  320 (377)
Q Consensus       246 l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-  320 (377)
                      +++|....    ...++|++|+++++. +..+|..+  ..+++|++|++++|. +..+|..+..+++|+.|++++|+.. 
T Consensus       176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~--~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          176 LQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             CTTSCCCEEECCCCCTTCCEEECCSSC-CCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred             CCCCcCcccccccccccCCEEECCCCc-CCcchhhh--cccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccC
Confidence            77776543    225567777777763 44566555  667888888888875 5567777778888888888888655 


Q ss_pred             CCCCcCCCCCCCcCeeeccCCCCcccc
Q 017094          321 SSLPEDMHHLTTLKLLAIGGCPALSER  347 (377)
Q Consensus       321 ~~~~~~l~~l~~L~~L~l~~c~~l~~~  347 (377)
                      ..+|..+..+++|+.+++.+|+.++..
T Consensus       252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          252 GTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             cCHHHHHhccccceEEECCCchhccCC
Confidence            355666677788888888776666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=2.3e-20  Score=166.25  Aligned_cols=220  Identities=19%  Similarity=0.190  Sum_probs=166.0

Q ss_pred             eEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEEec
Q 017094           97 RTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDL  175 (377)
Q Consensus        97 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  175 (377)
                      ++++.+++.....    +  ....++|++|+++++.+..++ ..+..+++|++|++++|......|..+..+++|++|++
T Consensus        14 ~~~~c~~~~l~~i----p--~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAV----P--VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSC----C--TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcccC----C--cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            5667666543321    1  123468999999999998776 46889999999999977433344778889999999999


Q ss_pred             cCccccccC-chhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc
Q 017094          176 EGCLELEEL-PKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK  253 (377)
Q Consensus       176 ~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  253 (377)
                      ++|..+..+ |..+..+++|++|++++|.+... +..+..+++|+.|++++|......+..++.+++|+.|++++|... 
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-  166 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-  166 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-
Confidence            998646665 67788999999999999988866 456788999999999998765444445777888888888876532 


Q ss_pred             cCCCccceEEecccccccccchh-hhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCC-cCCCCCC
Q 017094          254 NTRPRLRRVFIKEITQLLELPQW-LLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLP-EDMHHLT  331 (377)
Q Consensus       254 ~~~~~L~~L~l~~~~~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~  331 (377)
                                        .++.. +  ..+++|++|++++|......|..+..+++|++|++++|.. +.++ ..+..++
T Consensus       167 ------------------~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~  225 (285)
T 1ozn_A          167 ------------------SVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLR  225 (285)
T ss_dssp             ------------------EECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTCT
T ss_pred             ------------------ccCHHHh--cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC-CcCCHHHcccCc
Confidence                              34432 3  5678899999998876555678888899999999998854 4444 4578889


Q ss_pred             CcCeeeccCCCCc
Q 017094          332 TLKLLAIGGCPAL  344 (377)
Q Consensus       332 ~L~~L~l~~c~~l  344 (377)
                      +|+.|++++|+-.
T Consensus       226 ~L~~L~l~~N~~~  238 (285)
T 1ozn_A          226 ALQYLRLNDNPWV  238 (285)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             ccCEEeccCCCcc
Confidence            9999999888743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=1.2e-20  Score=170.81  Aligned_cols=231  Identities=12%  Similarity=0.096  Sum_probs=181.8

Q ss_pred             ceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094           96 LRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD  174 (377)
Q Consensus        96 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  174 (377)
                      ++..+++.+   .........+..+++|++|++++|.+..++ ..+..+++|++|++++| .+...++ +..+++|++|+
T Consensus        12 l~i~~ls~~---~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~   86 (317)
T 3o53_A           12 YKIEKVTDS---SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLD   86 (317)
T ss_dssp             EEEESCCTT---THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEE
T ss_pred             eeEeecccc---chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEE
Confidence            334444544   334555566778889999999999998775 57899999999999987 4554444 88999999999


Q ss_pred             ccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-
Q 017094          175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-  253 (377)
Q Consensus       175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-  253 (377)
                      +++| .+..++    .+++|+.|++++|.+...+.  ..+++|+.|++++|......+..++.+++|+.|++++|.... 
T Consensus        87 Ls~n-~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           87 LNNN-YVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CCSS-EEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CcCC-cccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            9997 455444    45899999999999887643  347889999999998766555678889999999999987665 


Q ss_pred             ------cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCC
Q 017094          254 ------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDM  327 (377)
Q Consensus       254 ------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l  327 (377)
                            ...++|++|+++++. +..++..   ..+++|++|++++|. +..+|..+..+++|++|++++| .++.+|..+
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~  233 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNF-IYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL  233 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSC-CCEEECC---CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC
T ss_pred             cHHHHhhccCcCCEEECCCCc-Ccccccc---cccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHh
Confidence                  134789999999875 4455443   347899999999976 5566767888999999999998 566788888


Q ss_pred             CCCCCcCeeeccCCCCc
Q 017094          328 HHLTTLKLLAIGGCPAL  344 (377)
Q Consensus       328 ~~l~~L~~L~l~~c~~l  344 (377)
                      ..+++|+.|++++|+-.
T Consensus       234 ~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCCTTCCEEECTTCCCB
T ss_pred             hcCCCCCEEEccCCCcc
Confidence            89999999999998754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=2.7e-20  Score=184.00  Aligned_cols=137  Identities=16%  Similarity=0.209  Sum_probs=112.0

Q ss_pred             CCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCC
Q 017094           66 SIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLK  144 (377)
Q Consensus        66 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~  144 (377)
                      ..|+.+++|+++++.+.... +..|.++++|++|++++|.+..   ..+.+|..+++|++|+|++|.+..+|. .+.+++
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~---i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~  124 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  124 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred             CCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCCC---cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence            45678999999999887653 4579999999999999986542   233468899999999999999998875 589999


Q ss_pred             ccceEeccCCCcccccCh-hhcCCCcccEEeccCccccc-cCchhhcccccccEeeecCcccccC
Q 017094          145 HMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELE-ELPKDIRYLVILRVFALTTKQKSLQ  207 (377)
Q Consensus       145 ~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~  207 (377)
                      +|++|++++| .+..+|+ .++++++|++|++++|.... ..|..+..+++|++|++++|.++..
T Consensus       125 ~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          125 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            9999999987 5666654 58899999999999985333 3578889999999999999877643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=1.6e-20  Score=167.35  Aligned_cols=206  Identities=23%  Similarity=0.241  Sum_probs=150.3

Q ss_pred             cCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccceEeccCCCccccc-ChhhcCCCcc
Q 017094           93 LGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSL  170 (377)
Q Consensus        93 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L  170 (377)
                      .+++++|+++++....   ..+..+..+++|++|++++|.+..+ |..+..+++|++|++++|..+..+ |..+..+++|
T Consensus        31 ~~~l~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             CTTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCcCCc---cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            4688999998876542   2234577888999999999988866 677888999999999977546655 6678888999


Q ss_pred             cEEeccCccccccCchhhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccC
Q 017094          171 QTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY  249 (377)
Q Consensus       171 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  249 (377)
                      ++|++++|......|..+..+++|++|++++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            999999875444446678889999999999998887653 4788899999999988754433345777888888888777


Q ss_pred             CCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCC
Q 017094          250 DDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS  321 (377)
Q Consensus       250 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  321 (377)
                      ....                  ..|..+  ..+++|++|++++|......+..+..+++|++|++++|+...
T Consensus       188 ~l~~------------------~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          188 RVAH------------------VHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCCE------------------ECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccc------------------cCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            5432                  224444  566778888888765433333456777888888888775543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=3.3e-22  Score=190.34  Aligned_cols=221  Identities=19%  Similarity=0.197  Sum_probs=123.2

Q ss_pred             CCcEEEEEecccccc---chhhhhcccCCceEEEeecCCchhhHHHHHHHhhccC----cccEEEeCCCccc-----cCC
Q 017094           70 RVRHLSFAAANALRN---DFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQ----FLRVLNLRESALE-----VCP  137 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~-----~l~  137 (377)
                      ++++|.+.++.+...   .++..+..+++|++|++++|...  ..........+.    +|++|++++|.+.     .++
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            677777777765542   34555666777777777776543  222223333344    5777777777765     345


Q ss_pred             cCcCCCCccceEeccCCCcccccChhhc-----CCCcccEEeccCccccc----cCchhhcccccccEeeecCcccccCc
Q 017094          138 RKMGNLKHMRYLDLSRNSKIKKLPKSIC-----ELQSLQTLDLEGCLELE----ELPKDIRYLVILRVFALTTKQKSLQE  208 (377)
Q Consensus       138 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~-----~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~  208 (377)
                      ..+..+++|++|++++|......+..+.     ..++|++|++++|....    .++..+..+++|++|++++|.+....
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence            6667777777777776542222122121     23467777777663322    23444556677777777776654321


Q ss_pred             -ccCC-----CCCCCCEEEccCCCCch----hhHHhcccCcccchhccccCCCCc-----------cCCCccceEEeccc
Q 017094          209 -SGIR-----SLGSLRCLTISGCRDLE----HLFEEIEQLSLLRTLLIHSYDDRK-----------NTRPRLRRVFIKEI  267 (377)
Q Consensus       209 -~~l~-----~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~-----------~~~~~L~~L~l~~~  267 (377)
                       ..+.     ..++|+.|++++|....    .++..+..+++|+.|++++|....           ...++|++|++++|
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence             1111     24467777777665443    245555666677777776665433           12456667776666


Q ss_pred             ccccc----cchhhhhcCCCCccEEeecCCC
Q 017094          268 TQLLE----LPQWLLQCCTDTLHTLVIGDCP  294 (377)
Q Consensus       268 ~~~~~----l~~~~~~~~~~~L~~L~l~~~~  294 (377)
                      .....    ++..+  ..+++|++|++++|.
T Consensus       267 ~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          267 GITAKGCGDLCRVL--RAKESLKELSLAGNE  295 (461)
T ss_dssp             CCCHHHHHHHHHHH--HHCTTCCEEECTTCC
T ss_pred             CCCHHHHHHHHHHH--hhCCCcceEECCCCC
Confidence            32211    34443  445666666666653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=1.2e-21  Score=186.50  Aligned_cols=271  Identities=18%  Similarity=0.152  Sum_probs=190.0

Q ss_pred             CCcEEEEEecccccc---chhhhhcccCCceEEEeecCCchhh-HHHHHHH-hhccCcccEEEeCCCcccc-----CCcC
Q 017094           70 RVRHLSFAAANALRN---DFSSLLSYLGRLRTIFFSTDDEKTS-QSFVESC-FSKSQFLRVLNLRESALEV-----CPRK  139 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~-~~~~~~L~~L~L~~~~~~~-----l~~~  139 (377)
                      ++++|.+.++.+...   .++..+..+++|++|++++|..... ...+... ....++|++|++++|.+..     ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            688888888876642   3466778888899999888865421 1112222 2235678999998888763     3555


Q ss_pred             cCCCCccceEeccCCCcccccChhhc-----CCCcccEEeccCccccc----cCchhhcccccccEeeecCcccccC---
Q 017094          140 MGNLKHMRYLDLSRNSKIKKLPKSIC-----ELQSLQTLDLEGCLELE----ELPKDIRYLVILRVFALTTKQKSLQ---  207 (377)
Q Consensus       140 ~~~l~~L~~L~l~~~~~~~~l~~~~~-----~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~---  207 (377)
                      +..+++|++|++++|......+..+.     ..++|++|++++|....    .++..+..+++|++|++++|.+...   
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            66778999999987743222222232     25689999999874333    2566778889999999999977643   


Q ss_pred             ---cccCCCCCCCCEEEccCCCCchh----hHHhcccCcccchhccccCCCCc-----------cCCCccceEEeccccc
Q 017094          208 ---ESGIRSLGSLRCLTISGCRDLEH----LFEEIEQLSLLRTLLIHSYDDRK-----------NTRPRLRRVFIKEITQ  269 (377)
Q Consensus       208 ---~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~-----------~~~~~L~~L~l~~~~~  269 (377)
                         +.....+++|+.|++++|.....    ++..+..+++|++|++++|....           ...++|++|++++|..
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               12234688999999999876543    56677789999999999987643           2336899999999864


Q ss_pred             ccc----cchhhhhcCCCCccEEeecCCCCCCCCCcc----CC-CCccCceecccCcccCC----CCCcCCCCCCCcCee
Q 017094          270 LLE----LPQWLLQCCTDTLHTLVIGDCPNFMALPGS----LK-DLEALETLAIRGCPKLS----SLPEDMHHLTTLKLL  336 (377)
Q Consensus       270 ~~~----l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~----~~-~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L  336 (377)
                      ...    ++.++  ..+++|++|++++|...+..+..    +. ..++|++|++++|....    .+|..+..+++|++|
T Consensus       326 ~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          326 TAACCSHFSSVL--AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             BGGGHHHHHHHH--HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             chHHHHHHHHHH--hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            332    45555  67799999999998532221222    22 26799999999995443    567777788999999


Q ss_pred             eccCCC
Q 017094          337 AIGGCP  342 (377)
Q Consensus       337 ~l~~c~  342 (377)
                      ++++|+
T Consensus       404 ~l~~N~  409 (461)
T 1z7x_W          404 DLSNNC  409 (461)
T ss_dssp             ECCSSS
T ss_pred             ECCCCC
Confidence            999985

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=3.9e-21  Score=183.95  Aligned_cols=229  Identities=14%  Similarity=0.095  Sum_probs=134.5

Q ss_pred             CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094           95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD  174 (377)
Q Consensus        95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  174 (377)
                      +|++|++++|.+..   ..+..+..+++|++|+|++|.+...++ +..+++|++|++++| .+..+|.    .++|++|+
T Consensus        35 ~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~  105 (487)
T 3oja_A           35 NVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH  105 (487)
T ss_dssp             GCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred             CccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence            66666666664431   223345666666666666666654443 666666666666654 3444432    25666666


Q ss_pred             ccCccccccCchhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcc-cCcccchhccccCCCC
Q 017094          175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIE-QLSLLRTLLIHSYDDR  252 (377)
Q Consensus       175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~  252 (377)
                      +++|. +..++.  ..+++|+.|++++|.++.. +..++.+++|+.|++++|......+..+. .+++|+.|++++|...
T Consensus       106 L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            66653 333322  2345666666666666654 33556666666666666665554454443 5666666666666543


Q ss_pred             c----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC-CCCCcCC
Q 017094          253 K----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL-SSLPEDM  327 (377)
Q Consensus       253 ~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~l  327 (377)
                      .    ...++|+.|+++++. +..+|..+  ..+++|+.|++++|. +..+|..+..+++|+.|++++|+.. ..+|..+
T Consensus       183 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DVKGQVVFAKLKTLDLSSNK-LAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEECCCCCTTCCEEECCSSC-CCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cccccccCCCCCEEECCCCC-CCCCCHhH--cCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            3    224456666666553 33455554  566777777777755 4456666777777777777777554 2445555


Q ss_pred             CCCCCcCeeecc
Q 017094          328 HHLTTLKLLAIG  339 (377)
Q Consensus       328 ~~l~~L~~L~l~  339 (377)
                      ..++.|+.+++.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            666666666664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=4.6e-21  Score=173.10  Aligned_cols=229  Identities=17%  Similarity=0.153  Sum_probs=162.0

Q ss_pred             hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCc-ccccChhhc-------CCCcccEEeccCccccccCchhh-
Q 017094          118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSK-IKKLPKSIC-------ELQSLQTLDLEGCLELEELPKDI-  188 (377)
Q Consensus       118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~l~~~~~-------~l~~L~~L~l~~~~~~~~~p~~l-  188 (377)
                      ...++|++|++++|.+ .+|..+...  |+.|++++|.. ...+|..+.       .+++|++|++++|...+.+|..+ 
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            3456788888888888 777655543  88888887643 124565554       68899999999886555777766 


Q ss_pred             -cccccccEeeecCcccccCcccCCCC-----CCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceE
Q 017094          189 -RYLVILRVFALTTKQKSLQESGIRSL-----GSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRV  262 (377)
Q Consensus       189 -~~l~~L~~L~l~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L  262 (377)
                       ..+++|++|++++|.++..+..++.+     ++|++|++++|......+..++.+++|+.|++++|....         
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------  187 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG---------  187 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH---------
T ss_pred             HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc---------
Confidence             88899999999999888766555555     889999999888765555678888888888888775322         


Q ss_pred             EecccccccccchhhhhcCCCCccEEeecCCCCCCCC---C-ccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeee
Q 017094          263 FIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL---P-GSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLA  337 (377)
Q Consensus       263 ~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l---~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~  337 (377)
                             ...++..+....+++|++|++++|. +..+   + ..+..+++|++|++++|......| ..+..+++|++|+
T Consensus       188 -------~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  259 (312)
T 1wwl_A          188 -------ERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN  259 (312)
T ss_dssp             -------HHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred             -------chHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence                   0012222222578999999999986 4432   2 223578999999999996555443 4456789999999


Q ss_pred             ccCCCCccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094          338 IGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       338 l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      +++|. ++.++..     +.  .+++.+.+.++.+..
T Consensus       260 Ls~N~-l~~ip~~-----~~--~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          260 LSFTG-LKQVPKG-----LP--AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             CTTSC-CSSCCSS-----CC--SEEEEEECCSSCCCS
T ss_pred             CCCCc-cChhhhh-----cc--CCceEEECCCCCCCC
Confidence            99995 4444332     11  678888888877764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=1.7e-19  Score=160.87  Aligned_cols=102  Identities=26%  Similarity=0.320  Sum_probs=46.9

Q ss_pred             cccEEEeCCCccccC-CcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeec
Q 017094          122 FLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT  200 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~  200 (377)
                      .++.|++++|.+..+ +..+..+++|++|++++| .+..++.. +.+++|++|++++| .+..+|..+..+++|++|+++
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence            445555555554433 233444555555555543 33333332 34445555555543 333444444445555555555


Q ss_pred             CcccccCc-ccCCCCCCCCEEEccCCC
Q 017094          201 TKQKSLQE-SGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       201 ~~~~~~~~-~~l~~l~~L~~L~l~~~~  226 (377)
                      +|.++..+ ..+..+++|+.|++++|+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCC
Confidence            55444433 234444455555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=6.5e-20  Score=175.47  Aligned_cols=218  Identities=12%  Similarity=0.098  Sum_probs=176.4

Q ss_pred             HHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcc
Q 017094          112 FVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRY  190 (377)
Q Consensus       112 ~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~  190 (377)
                      .+......+++|++|+|++|.+..++ ..+..+++|++|++++|. +...++ +..+++|++|++++| .+..+|    .
T Consensus        25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~----~   97 (487)
T 3oja_A           25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELL----V   97 (487)
T ss_dssp             HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEE----E
T ss_pred             HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCC----C
Confidence            33334455669999999999998764 689999999999999874 554444 889999999999998 455554    3


Q ss_pred             cccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc-------cCCCccceEE
Q 017094          191 LVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK-------NTRPRLRRVF  263 (377)
Q Consensus       191 l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~L~~L~  263 (377)
                      .++|+.|++++|.+...+.  ..+++|+.|++++|......+..++.+++|+.|++++|....       ...++|++|+
T Consensus        98 ~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A           98 GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            4899999999999987643  356899999999998777667778899999999999997665       1357899999


Q ss_pred             ecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094          264 IKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA  343 (377)
Q Consensus       264 l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  343 (377)
                      ++++. +..++..   ..+++|++|++++|. +..+|..+..+++|+.|++++|. ++.+|..+..+++|+.|++++|+-
T Consensus       176 Ls~N~-l~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          176 LQYNF-IYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CTTSC-CCEEECC---CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred             cCCCc-ccccccc---ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence            99985 4455443   358999999999976 55677678899999999999984 566888889999999999999975


Q ss_pred             c
Q 017094          344 L  344 (377)
Q Consensus       344 l  344 (377)
                      .
T Consensus       250 ~  250 (487)
T 3oja_A          250 H  250 (487)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=4.8e-19  Score=173.23  Aligned_cols=234  Identities=20%  Similarity=0.180  Sum_probs=148.0

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      ++++.|.+.++.+...  +.   .+++|++|++++|.+...    +.   .+++|++|++++|.+..+|.   .+++|++
T Consensus        61 ~~L~~L~L~~N~l~~l--p~---~l~~L~~L~Ls~N~l~~l----p~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~  125 (622)
T 3g06_A           61 AHITTLVIPDNNLTSL--PA---LPPELRTLEVSGNQLTSL----PV---LPPGLLELSIFSNPLTHLPA---LPSGLCK  125 (622)
T ss_dssp             TTCSEEEECSCCCSCC--CC---CCTTCCEEEECSCCCSCC----CC---CCTTCCEEEECSCCCCCCCC---CCTTCCE
T ss_pred             CCCcEEEecCCCCCCC--CC---cCCCCCEEEcCCCcCCcC----CC---CCCCCCEEECcCCcCCCCCC---CCCCcCE
Confidence            5667777776655532  22   456677777776654321    11   45667777777776666655   4566777


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  228 (377)
                      |++++| .+..+|..   +++|++|++++| .+..+|.   .+++|+.|++++|.++..+   ..+++|+.|++++|...
T Consensus       126 L~L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          126 LWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             EECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred             EECCCC-CCCcCCCC---CCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC
Confidence            777654 45555543   366777777765 4444543   2456677777777766654   44577777777776643


Q ss_pred             hhhHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCC
Q 017094          229 EHLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL  306 (377)
Q Consensus       229 ~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l  306 (377)
                       .++.   .+++|+.|++++|....  ..+++|+.|+++++ .+..+|     ..+++|++|++++|. +..+|.   .+
T Consensus       195 -~l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N~-L~~lp~---~~  260 (622)
T 3g06_A          195 -SLPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNR-LTSLPM---LP  260 (622)
T ss_dssp             -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC---CC
T ss_pred             -CCCC---ccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCCC-CCcCCc---cc
Confidence             2322   24567777777776544  22357888888776 444555     445778888888764 556665   56


Q ss_pred             ccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094          307 EALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA  343 (377)
Q Consensus       307 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  343 (377)
                      ++|++|++++| .++.+|..+..+++|+.|++++|+-
T Consensus       261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence            77888888877 4557777777788888888888763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.82  E-value=5.7e-19  Score=167.36  Aligned_cols=177  Identities=19%  Similarity=0.285  Sum_probs=99.2

Q ss_pred             CCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCcc
Q 017094           67 IPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHM  146 (377)
Q Consensus        67 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L  146 (377)
                      .++++++|.+.++.+..  ++.   ..++|++|++++|......       ...++|++|++++|.+..+| .++.+++|
T Consensus        89 ~~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~l~-------~~~~~L~~L~L~~n~l~~lp-~~~~l~~L  155 (454)
T 1jl5_A           89 LPPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLEKLP-ELQNSSFL  155 (454)
T ss_dssp             CCTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSCCC-------SCCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred             CcCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCccc-------CCCCCCCEEECcCCCCCCCc-ccCCCCCC
Confidence            34577777777766554  222   2367777777766543211       01156777777777777666 46777777


Q ss_pred             ceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094          147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  226 (377)
                      ++|++++| .+..+|..+   .+|++|++++| .+..+| .++.+++|++|++++|.+...+..   .++|+.|++++|.
T Consensus       156 ~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~  226 (454)
T 1jl5_A          156 KIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI  226 (454)
T ss_dssp             CEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC
T ss_pred             CEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCc
Confidence            77777765 444555432   46677777665 344455 466666666666666666554321   1355666665554


Q ss_pred             CchhhHHhcccCcccchhccccCCCCc--cCCCccceEEeccc
Q 017094          227 DLEHLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEI  267 (377)
Q Consensus       227 ~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~  267 (377)
                      .. .+| .++.+++|+.|++++|....  ..+++|++|+++++
T Consensus       227 l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          227 LE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN  267 (454)
T ss_dssp             CS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSS
T ss_pred             CC-ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCC
Confidence            32 333 25555556666555554333  12234455554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.5e-20  Score=171.47  Aligned_cols=215  Identities=17%  Similarity=0.145  Sum_probs=130.6

Q ss_pred             CceEEEeecCCchhhHHHHHHHhhcc--CcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccc-cChhhcCCCccc
Q 017094           95 RLRTIFFSTDDEKTSQSFVESCFSKS--QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKK-LPKSICELQSLQ  171 (377)
Q Consensus        95 ~L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~  171 (377)
                      .+++++++++...      +..+..+  ++++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|+
T Consensus        48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            3566666665432      1223333  567777777777665555566677777777776542222 566666777777


Q ss_pred             EEeccCccccccCchhhcccccccEeeecCc-cccc--CcccCCCCCCCCEEEccCC-CCchh-hHHhcccCc-ccchhc
Q 017094          172 TLDLEGCLELEELPKDIRYLVILRVFALTTK-QKSL--QESGIRSLGSLRCLTISGC-RDLEH-LFEEIEQLS-LLRTLL  245 (377)
Q Consensus       172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~-~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~  245 (377)
                      +|++++|......+..+..+++|++|++++| .++.  .+..+..+++|++|++++| ..... ++..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            7777776444455666667777777777776 4442  2334566777777777777 44332 455566677 777777


Q ss_pred             cccCCC-Cc--------cCCCccceEEecccccc-cccchhhhhcCCCCccEEeecCCCCCC-CCCccCCCCccCceecc
Q 017094          246 IHSYDD-RK--------NTRPRLRRVFIKEITQL-LELPQWLLQCCTDTLHTLVIGDCPNFM-ALPGSLKDLEALETLAI  314 (377)
Q Consensus       246 l~~~~~-~~--------~~~~~L~~L~l~~~~~~-~~l~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l  314 (377)
                      +++|.. ..        ...++|++|++++|..+ ...+..+  ..+++|++|++++|..+. .....+..+++|++|++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  279 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  279 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence            777631 11        23456666666666533 2344444  566888888888875221 11124567888888888


Q ss_pred             cCc
Q 017094          315 RGC  317 (377)
Q Consensus       315 ~~~  317 (377)
                      ++|
T Consensus       280 ~~~  282 (336)
T 2ast_B          280 FGI  282 (336)
T ss_dssp             TTS
T ss_pred             cCc
Confidence            887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=8.1e-19  Score=171.64  Aligned_cols=255  Identities=18%  Similarity=0.175  Sum_probs=199.7

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      .++.|.+.++.+..  +|..+.  ++|+.|++++|.+...    +.   .+++|++|++++|.++.+|.   .+++|++|
T Consensus        41 ~l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~l----p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L  106 (622)
T 3g06_A           41 GNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTSL----PA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL  106 (622)
T ss_dssp             CCCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSCC----CC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred             CCcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCCCC----CC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence            58889998887764  343343  8999999999876522    11   57899999999999998887   67999999


Q ss_pred             eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094          150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE  229 (377)
Q Consensus       150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  229 (377)
                      ++++| .+..+|.   .+++|++|++++| .+..+|..   +++|++|++++|.++..+.   .+++|+.|++++|....
T Consensus       107 ~Ls~N-~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          107 SIFSN-PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             EECSC-CCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred             ECcCC-cCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC
Confidence            99976 6777776   6789999999987 56777764   4899999999999887654   35789999999987543


Q ss_pred             hhHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCc
Q 017094          230 HLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLE  307 (377)
Q Consensus       230 ~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~  307 (377)
                       ++   ..+++|+.|++++|....  ...++|+.|+++++ .+..+|     ..+++|++|++++|. +..+|   ..++
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N~-L~~lp---~~l~  241 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSLP-----ALPSGLKELIVSGNR-LTSLP---VLPS  241 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCC-----CCCTTCCEEECCSSC-CSCCC---CCCT
T ss_pred             -Cc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCC-cccccC-----CCCCCCCEEEccCCc-cCcCC---CCCC
Confidence             44   457899999999998765  34578999999987 444666     345899999999975 56677   4678


Q ss_pred             cCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCCccC
Q 017094          308 ALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDEIIK  373 (377)
Q Consensus       308 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (377)
                      +|++|++++| .++.+|.   .+++|+.|++++| .++.++     ..+..+.++..+.+.++.+.
T Consensus       242 ~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp-----~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          242 ELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLP-----ESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             TCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCC-----GGGGGSCTTCEEECCSCCCC
T ss_pred             cCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCC-----HHHhhccccCEEEecCCCCC
Confidence            9999999998 5667886   6789999999998 455443     23556788888888888775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=2.5e-19  Score=158.74  Aligned_cols=128  Identities=22%  Similarity=0.147  Sum_probs=55.0

Q ss_pred             cccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094          122 FLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL  199 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  199 (377)
                      +|++|++++|.+..++. .+..+++|++|++++| .+..++ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            34444444444443332 3444444444444443 222222 23444444455554444222222233444444555555


Q ss_pred             cCcccccCc-ccCCCCCCCCEEEccCCCCch-hhHHhcccCcccchhccccCC
Q 017094          200 TTKQKSLQE-SGIRSLGSLRCLTISGCRDLE-HLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       200 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      ++|.+...+ ..++.+++|++|++++|.... .++..++.+++|+.|++++|.
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            444444332 134444555555555444322 123444444445555444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.2e-18  Score=153.79  Aligned_cols=195  Identities=22%  Similarity=0.270  Sum_probs=86.5

Q ss_pred             ccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchh-hcccccccEeeec
Q 017094          123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFALT  200 (377)
Q Consensus       123 L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~  200 (377)
                      .+.++++++.+..+|..+.  ++|++|++++| .+..++ ..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence            3444555544444444332  34555555543 233332 23444555555555544 23333322 2445555555555


Q ss_pred             CcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhh
Q 017094          201 TKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQ  279 (377)
Q Consensus       201 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~  279 (377)
                      +|.+...+ ..+..+++|+.|++++|......+..++.+++|+.|++++|...                   .++...+ 
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~~~~~-  153 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------------------SLPKGVF-  153 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTT-
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------------------ccCHhHc-
Confidence            55544433 23344555555555554433322233444444555544444321                   2222111 


Q ss_pred             cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCc-CCCCCCCcCeeeccCCC
Q 017094          280 CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPE-DMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~c~  342 (377)
                      ..+++|++|++++|......+..+..+++|++|++++|. ++.+|. .+..+++|+.|++.+||
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence            344555555555543222222234555556666665552 333332 34455556666655554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=1.2e-18  Score=172.10  Aligned_cols=108  Identities=21%  Similarity=0.295  Sum_probs=87.6

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCcc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHM  146 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L  146 (377)
                      -+++++|++.++.+.... +.+|.++++|++|++++|....   ..+..|..+++|++|++++|.+..++. .++.+++|
T Consensus        75 l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~---l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L  150 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  150 (635)
T ss_dssp             CTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCE---ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             CCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCC---CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence            368999999998877643 4578999999999999987642   233468899999999999999998865 58999999


Q ss_pred             ceEeccCCCccc-ccChhhcCCCcccEEeccCcc
Q 017094          147 RYLDLSRNSKIK-KLPKSICELQSLQTLDLEGCL  179 (377)
Q Consensus       147 ~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~  179 (377)
                      ++|++++|.... .+|..++.+++|++|++++|.
T Consensus       151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            999999874332 457778889999999998764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=1.2e-18  Score=165.16  Aligned_cols=237  Identities=19%  Similarity=0.203  Sum_probs=114.9

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      +.+++|.+.++.+....  .   ..++|++|++++|....    ++ .+..+++|++|++++|.+..+|..+   .+|++
T Consensus       111 ~~L~~L~l~~n~l~~l~--~---~~~~L~~L~L~~n~l~~----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~  177 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALS--D---LPPLLEYLGVSNNQLEK----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEF  177 (454)
T ss_dssp             TTCCEEECCSSCCSCCC--S---CCTTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCE
T ss_pred             CCCcEEECCCCccCccc--C---CCCCCCEEECcCCCCCC----Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccE
Confidence            45566666555443311  0   01455566665554331    11 2555555566666555555544332   35555


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCcc-------------------ccccCchhhcccccccEeeecCcccccCcc
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCL-------------------ELEELPKDIRYLVILRVFALTTKQKSLQES  209 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------------~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~  209 (377)
                      |++++| .+..+| .++.+++|++|++++|.                   .+..+| .++.+++|++|++++|.+...+.
T Consensus       178 L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          178 IAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             EECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred             EECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccc
Confidence            555544 333344 34555555555555542                   222333 24444444444444444443322


Q ss_pred             cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhhcCCCCccE
Q 017094          210 GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT  287 (377)
Q Consensus       210 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~  287 (377)
                      .   +++|+.|++++|.... ++.   .+++|+.|++++|....  ..+++|+.|+++++. +..++     ...++|++
T Consensus       255 ~---~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~-l~~i~-----~~~~~L~~  321 (454)
T 1jl5_A          255 L---PPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE-IRSLC-----DLPPSLEE  321 (454)
T ss_dssp             C---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC-CSEEC-----CCCTTCCE
T ss_pred             c---ccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCc-CCccc-----CCcCcCCE
Confidence            1   2344444444443221 211   12445555555554433  223455555555542 11221     11246777


Q ss_pred             EeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          288 LVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       288 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      |++++|. +..+|..   +++|++|++++| .++.+|.   .+++|+.|++++|+
T Consensus       322 L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          322 LNVSNNK-LIELPAL---PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             EECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred             EECCCCc-ccccccc---CCcCCEEECCCC-ccccccc---hhhhccEEECCCCC
Confidence            7777754 3345543   467777777776 4455665   35777777777764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=4.8e-21  Score=178.22  Aligned_cols=235  Identities=13%  Similarity=0.080  Sum_probs=119.9

Q ss_pred             hhhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCcccc----CCcC-------cCCCCccceEeccCC
Q 017094           87 SSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALEV----CPRK-------MGNLKHMRYLDLSRN  154 (377)
Q Consensus        87 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~----l~~~-------~~~l~~L~~L~l~~~  154 (377)
                      ...+..+++|++|++++|.+.. ....+...+..+++|++|+|++|.+..    +|..       +..+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            3445566666666666664431 122233345566666666666654331    2222       245666666666655


Q ss_pred             Cccc----ccChhhcCCCcccEEeccCcccccc----Cchhhccc---------ccccEeeecCccccc--Cc---ccCC
Q 017094          155 SKIK----KLPKSICELQSLQTLDLEGCLELEE----LPKDIRYL---------VILRVFALTTKQKSL--QE---SGIR  212 (377)
Q Consensus       155 ~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l---------~~L~~L~l~~~~~~~--~~---~~l~  212 (377)
                      ....    .+|..+..+++|++|++++|.....    ++..+..+         ++|++|++++|.+..  .+   ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            3322    2455566666666666666543211    22223333         566666666666541  11   2344


Q ss_pred             CCCCCCEEEccCCCCchh----hHH-hcccCcccchhccccCCCCc----------cCCCccceEEecccccccc----c
Q 017094          213 SLGSLRCLTISGCRDLEH----LFE-EIEQLSLLRTLLIHSYDDRK----------NTRPRLRRVFIKEITQLLE----L  273 (377)
Q Consensus       213 ~l~~L~~L~l~~~~~~~~----~~~-~l~~l~~L~~L~l~~~~~~~----------~~~~~L~~L~l~~~~~~~~----l  273 (377)
                      .+++|+.|++++|.....    +.. .+..+++|+.|++++|....          ...++|++|+|++|.....    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            556666666666654321    222 45566666666666655421          1223444444444432111    3


Q ss_pred             chhhhhcCCCCccEEeecCCCCCC----CCCccC-CCCccCceecccCcccCC
Q 017094          274 PQWLLQCCTDTLHTLVIGDCPNFM----ALPGSL-KDLEALETLAIRGCPKLS  321 (377)
Q Consensus       274 ~~~~~~~~~~~L~~L~l~~~~~~~----~l~~~~-~~l~~L~~L~l~~~~~~~  321 (377)
                      +..+....+++|++|++++|....    .+|..+ ..+++|++|++++|....
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            333311236677777777765333    255555 446777777777765443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=6.1e-19  Score=158.78  Aligned_cols=197  Identities=21%  Similarity=0.253  Sum_probs=135.7

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCc
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS  169 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~  169 (377)
                      ...+++|++|+++++.....    + .+..+++|++|++++|.+..++. +..+++|++|++++| .+..++ .+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l----~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI----E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCccCc----h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCC
Confidence            44567788888877754321    1 36677888888888888777766 777888888888865 455554 4777888


Q ss_pred             ccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccC
Q 017094          170 LQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY  249 (377)
Q Consensus       170 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  249 (377)
                      |++|++++| .+..++. +..+++|++|++++|.+...+. +..+++|+.|++++|.... ++. +..+++|+.|++++|
T Consensus       109 L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          109 IKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN  183 (308)
T ss_dssp             CCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred             CCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC
Confidence            888888876 4555554 7778888888888887776643 7777888888888776433 322 666677777777666


Q ss_pred             CCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCC
Q 017094          250 DDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLP  324 (377)
Q Consensus       250 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~  324 (377)
                      ...                   .++. +  ..+++|++|++++|. +..++ .+..+++|+.|++++|+. +..|
T Consensus       184 ~l~-------------------~~~~-l--~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N~i-~~~~  233 (308)
T 1h6u_A          184 KIS-------------------DISP-L--ASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQTI-TNQP  233 (308)
T ss_dssp             CCC-------------------CCGG-G--GGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEEEE-ECCC
T ss_pred             ccC-------------------cChh-h--cCCCCCCEEEccCCc-cCccc-cccCCCCCCEEEccCCee-ecCC
Confidence            432                   3332 3  667888888888875 44555 367888888888888753 4444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.7e-18  Score=156.06  Aligned_cols=228  Identities=13%  Similarity=0.070  Sum_probs=147.6

Q ss_pred             ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccc-cCCcCc--CCCCccceEeccCCCcccccC----hhh
Q 017094           92 YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALE-VCPRKM--GNLKHMRYLDLSRNSKIKKLP----KSI  164 (377)
Q Consensus        92 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~l~----~~~  164 (377)
                      ....++.+.+..+......-.....+..+++|++|++++|.+. ..|..+  ..+++|++|++++|......+    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3345778888776543211111112334567999999999987 456666  889999999999875443333    234


Q ss_pred             cCCCcccEEeccCccccccCchhhcccccccEeeecCccccc---Cc--ccCCCCCCCCEEEccCCCCc--hhhHHh-cc
Q 017094          165 CELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL---QE--SGIRSLGSLRCLTISGCRDL--EHLFEE-IE  236 (377)
Q Consensus       165 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~---~~--~~l~~l~~L~~L~l~~~~~~--~~~~~~-l~  236 (377)
                      ..+++|++|++++|......|..+..+++|++|++++|.+..   .+  ..+..+++|++|++++|...  ...+.. ++
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            568889999998875544445677888888888888887643   11  23367788888888887653  222222 45


Q ss_pred             cCcccchhccccCCCCccCCCccceEEecccccccccchhhhh-cCCCCccEEeecCCCCCCCCCccCCCCccCceeccc
Q 017094          237 QLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQ-CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIR  315 (377)
Q Consensus       237 ~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~  315 (377)
                      .+++|++|++++|....                  ..|..+.. ..+++|++|++++|. +..+|..+.  ++|++|+++
T Consensus       222 ~l~~L~~L~Ls~N~l~~------------------~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls  280 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRA------------------TVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLS  280 (310)
T ss_dssp             HTCCCSSEECTTSCCCC------------------CCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECC
T ss_pred             cCCCCCEEECCCCCCCc------------------cchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECC
Confidence            67788888887776443                  11222200 123678888888765 446776653  788888888


Q ss_pred             CcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          316 GCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       316 ~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      +| .++.+|. +..+++|+.|++++++
T Consensus       281 ~N-~l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          281 SN-RLNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             SC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred             CC-cCCCCch-hhhCCCccEEECcCCC
Confidence            87 4555554 5677888888888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=4.6e-19  Score=153.66  Aligned_cols=199  Identities=15%  Similarity=0.211  Sum_probs=147.2

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCc-hhhcccccccEe
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELP-KDIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L  197 (377)
                      .+|++|++++|.+..+|. .+..+++|++|++++|..++.++. .+..+++|++|++++|..+..+| ..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378888898888887765 678889999999987644666654 67888999999998733555555 457888999999


Q ss_pred             eecCcccccCcccCCCCCCCC---EEEccCCCCchhhH-HhcccCcccc-hhccccCCCCccCCCccceEEecccccccc
Q 017094          198 ALTTKQKSLQESGIRSLGSLR---CLTISGCRDLEHLF-EEIEQLSLLR-TLLIHSYDDRKNTRPRLRRVFIKEITQLLE  272 (377)
Q Consensus       198 ~l~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~-~~l~~l~~L~-~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (377)
                      ++++|.++..+. +..+++|+   .|++++|..+..++ ..+..+++|+ .|++++|..                   ..
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-------------------~~  170 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-------------------TS  170 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-------------------CE
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-------------------cc
Confidence            999998887754 78888888   99999883334443 3467778888 888877643                   24


Q ss_pred             cchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCC-ccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCc
Q 017094          273 LPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDL-EALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL  344 (377)
Q Consensus       273 l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  344 (377)
                      +|...+  ..++|++|++++|..+..++ ..+..+ ++|++|++++| .++.+|..  .+++|+.|++.++..|
T Consensus       171 i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          171 VQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL  239 (239)
T ss_dssp             ECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred             cCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence            555443  22789999999986455654 457788 99999999987 45667754  7889999999988653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=8.7e-19  Score=154.95  Aligned_cols=208  Identities=17%  Similarity=0.116  Sum_probs=126.3

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCC
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQ  168 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~  168 (377)
                      ...+++|+.|.+.++.....     ..+..+++|++|++++|.+..++ .+..+++|++|++++| .+..++ ..+..++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~-----~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV-----QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLT  109 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCT
T ss_pred             cccccceeeeeeCCCCcccc-----cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCc
Confidence            44566777777766644321     12566777777777777766543 5666777777777765 334333 3356677


Q ss_pred             cccEEeccCccccccCchhhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccc
Q 017094          169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIH  247 (377)
Q Consensus       169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  247 (377)
                      +|++|++++|......+..+..+++|++|++++|.++..+. .+..+++|+.|++++|......+..++.+++|+.|+++
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            77777777764332233345667777777777776665543 35667777777777766443333335566666666666


Q ss_pred             cCCCCccCCCccceEEecccccccccch-hhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcC
Q 017094          248 SYDDRKNTRPRLRRVFIKEITQLLELPQ-WLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPED  326 (377)
Q Consensus       248 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  326 (377)
                      +|...                   .++. .+  ..+++|++|++++|..       .+.+++|+.|+++.|.....+|..
T Consensus       190 ~N~l~-------------------~~~~~~~--~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          190 QNQLK-------------------SVPDGVF--DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             SSCCS-------------------CCCTTTT--TTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCT
T ss_pred             CCcCC-------------------ccCHHHH--hCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCc
Confidence            65432                   2222 23  5667788888877642       245667777877777666677766


Q ss_pred             CCCCCC
Q 017094          327 MHHLTT  332 (377)
Q Consensus       327 l~~l~~  332 (377)
                      +..++.
T Consensus       242 ~~~~~~  247 (272)
T 3rfs_A          242 AGSVAP  247 (272)
T ss_dssp             TSCBCG
T ss_pred             ccccCC
Confidence            655444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=4.9e-20  Score=168.05  Aligned_cols=244  Identities=16%  Similarity=0.119  Sum_probs=160.0

Q ss_pred             CCcEEEEEeccccccchhhhhccc--CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc--CCcCcCCCCc
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYL--GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV--CPRKMGNLKH  145 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~l~~  145 (377)
                      ..+++++.++.+.    +..+..+  ++++.|++.++......    ..+..+++|++|++++|.+..  ++..+..+++
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPL----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCC----CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccc----hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence            4667777665544    2234555  77888888776543211    114467788888888887652  6666777888


Q ss_pred             cceEeccCCCcccccChhhcCCCcccEEeccCccccc--cCchhhcccccccEeeecCc-cccc--CcccCCCCC-CCCE
Q 017094          146 MRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE--ELPKDIRYLVILRVFALTTK-QKSL--QESGIRSLG-SLRC  219 (377)
Q Consensus       146 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~-~~~~--~~~~l~~l~-~L~~  219 (377)
                      |++|++++|......+..++.+++|++|++++|..+.  .++..+..+++|++|++++| .++.  .+..+..++ +|++
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~  199 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  199 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence            8888888764443566677778888888888774444  25666777888888888887 6663  234566677 8888


Q ss_pred             EEccCCC--Cc-hhhHHhcccCcccchhccccCCCCc-------cCCCccceEEecccccccccc-hhhhhcCCCCccEE
Q 017094          220 LTISGCR--DL-EHLFEEIEQLSLLRTLLIHSYDDRK-------NTRPRLRRVFIKEITQLLELP-QWLLQCCTDTLHTL  288 (377)
Q Consensus       220 L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~~~L~~L  288 (377)
                      |++++|.  .. ..++..+..+++|+.|++++|...+       ...++|++|++++|..+.... ..+  ..+++|++|
T Consensus       200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L  277 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTL  277 (336)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG--GGCTTCCEE
T ss_pred             EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH--hcCCCCCEE
Confidence            8888873  32 4456666778888888888877322       234678888888876332221 133  578999999


Q ss_pred             eecCCCCCCCCCc-cCCCC-ccCceecccCcccCCCCCcCCC
Q 017094          289 VIGDCPNFMALPG-SLKDL-EALETLAIRGCPKLSSLPEDMH  328 (377)
Q Consensus       289 ~l~~~~~~~~l~~-~~~~l-~~L~~L~l~~~~~~~~~~~~l~  328 (377)
                      ++++|     +++ .+..+ .+|+.|++++|...+..|..+.
T Consensus       278 ~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          278 QVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             ECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             eccCc-----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence            99998     332 22333 3477778887765555565443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.79  E-value=3.8e-20  Score=172.16  Aligned_cols=247  Identities=12%  Similarity=0.033  Sum_probs=182.7

Q ss_pred             CCCcEEEEEeccccccc---hhhhhcccCCceEEEeecCCchh-------hHHHHHHHhhccCcccEEEeCCCcccc---
Q 017094           69 KRVRHLSFAAANALRND---FSSLLSYLGRLRTIFFSTDDEKT-------SQSFVESCFSKSQFLRVLNLRESALEV---  135 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~~~~L~~L~L~~~~~~~---  135 (377)
                      +.+++|.+.++.+....   +...+..+++|++|++++|....       ....+...+..+++|++|+|++|.+..   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            47999999988776532   33457789999999999875432       223344456889999999999999875   


Q ss_pred             --CCcCcCCCCccceEeccCCCccc----ccChhhcCC---------CcccEEeccCcccc-ccCc---hhhcccccccE
Q 017094          136 --CPRKMGNLKHMRYLDLSRNSKIK----KLPKSICEL---------QSLQTLDLEGCLEL-EELP---KDIRYLVILRV  196 (377)
Q Consensus       136 --l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l---------~~L~~L~l~~~~~~-~~~p---~~l~~l~~L~~  196 (377)
                        +|..+..+++|++|++++|....    .++..+..+         ++|++|++++|... ..+|   ..+..+++|+.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence              67788899999999999875432    233344444         89999999998543 2344   46778999999


Q ss_pred             eeecCccccc------CcccCCCCCCCCEEEccCCCCc----hhhHHhcccCcccchhccccCCCCc------------c
Q 017094          197 FALTTKQKSL------QESGIRSLGSLRCLTISGCRDL----EHLFEEIEQLSLLRTLLIHSYDDRK------------N  254 (377)
Q Consensus       197 L~l~~~~~~~------~~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~------------~  254 (377)
                      |++++|.+..      .+..+..+++|+.|++++|...    ..++..+..+++|+.|++++|....            .
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            9999998872      2237888999999999999864    6678888999999999999998754            1


Q ss_pred             CCCccceEEeccccccc----ccchhhhhcCCCCccEEeecCCCCCCCCC--ccC-CCCccCceecccC
Q 017094          255 TRPRLRRVFIKEITQLL----ELPQWLLQCCTDTLHTLVIGDCPNFMALP--GSL-KDLEALETLAIRG  316 (377)
Q Consensus       255 ~~~~L~~L~l~~~~~~~----~l~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~-~~l~~L~~L~l~~  316 (377)
                      ..++|++|+|+++....    .+|..+. ..+++|++|++++|......+  ..+ ..+++++.+.+..
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence            26889999999986554    3766653 457999999999987544332  222 2355555555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=4.2e-20  Score=181.36  Aligned_cols=39  Identities=26%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             CCCCccCceecccCcccCC--CCCcCCCCCCCcCeeeccCCC
Q 017094          303 LKDLEALETLAIRGCPKLS--SLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       303 ~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      +.++++|++|++++|. ++  .++.....+++|++|++++|+
T Consensus       484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            3455556666666554 22  122223345566666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=9e-19  Score=155.17  Aligned_cols=202  Identities=15%  Similarity=0.081  Sum_probs=145.4

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccE
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQT  172 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  172 (377)
                      +++++|++++|....   .....+..+++|++|++++|.+..++. .+..+++|++|++++|......+..+..+++|++
T Consensus        28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence            579999999886542   222357889999999999999887654 7889999999999987444344467889999999


Q ss_pred             EeccCccccccCchhhcccccccEeeecCccccc--CcccCCCCCCCCEEEccCCCCchhhHHhcccCcccc----hhcc
Q 017094          173 LDLEGCLELEELPKDIRYLVILRVFALTTKQKSL--QESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLR----TLLI  246 (377)
Q Consensus       173 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l  246 (377)
                      |++++|......+..+..+++|++|++++|.+..  .+..+..+++|+.|++++|......+..+..+++|+    .|++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            9999874433333368899999999999999886  467888999999999999876554444555555555    4555


Q ss_pred             ccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccC
Q 017094          247 HSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKL  320 (377)
Q Consensus       247 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~  320 (377)
                      ++|..                   ..++...  ....+|++|++++|. +..+|. .+..+++|++|++++|+..
T Consensus       185 s~n~l-------------------~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          185 SLNPM-------------------NFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSSCC-------------------CEECTTS--SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCcc-------------------cccCccc--cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccc
Confidence            55432                   2344333  233478888888766 444444 3567888888888877543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=1e-18  Score=154.53  Aligned_cols=203  Identities=18%  Similarity=0.182  Sum_probs=157.7

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC-cCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK-MGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~  147 (377)
                      +.++.|.+.++.+....   .+..+++|+.|++++|.....     ..+..+++|++|++++|.+..++.. +..+++|+
T Consensus        41 ~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHDI-----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             TTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCCC-----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCCc-----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            47899999888766543   588899999999999876532     3588999999999999999977654 68999999


Q ss_pred             eEeccCCCcccccC-hhhcCCCcccEEeccCccccccCch-hhcccccccEeeecCcccccCcc-cCCCCCCCCEEEccC
Q 017094          148 YLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTTKQKSLQES-GIRSLGSLRCLTISG  224 (377)
Q Consensus       148 ~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~  224 (377)
                      +|++++|. +..++ ..+..+++|++|++++| .+..+|. .+..+++|+.|++++|.++..+. .+..+++|+.|++++
T Consensus       113 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          113 ELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             EEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence            99999874 55554 45788999999999998 4555554 46899999999999999987654 468899999999999


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK  304 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  304 (377)
                      |......+..+..+++|+.|++++|+..                           +.+++|+.|+++.|...+.+|.+++
T Consensus       191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------------------~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------------------CTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBC---------------------------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             CcCCccCHHHHhCCcCCCEEEccCCCcc---------------------------ccCcHHHHHHHHHHhCCCcccCccc
Confidence            9876555555788999999999888643                           3345566666665555556666665


Q ss_pred             CCcc
Q 017094          305 DLEA  308 (377)
Q Consensus       305 ~l~~  308 (377)
                      .++.
T Consensus       244 ~~~~  247 (272)
T 3rfs_A          244 SVAP  247 (272)
T ss_dssp             CBCG
T ss_pred             ccCC
Confidence            5543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=5.2e-18  Score=152.70  Aligned_cols=164  Identities=16%  Similarity=0.223  Sum_probs=75.7

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      ++++|.+.++.+....   .+..+++|+.|++++|......    . +..+++|++|++++|.+..++ .+..+++|++|
T Consensus        42 ~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~----~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLA----P-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             TCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----G-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             CcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCCh----h-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence            4555555544443321   3444555555555554432111    1 445555555555555554443 34455555555


Q ss_pred             eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094          150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE  229 (377)
Q Consensus       150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  229 (377)
                      ++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+...+. +..+++|+.|++++|....
T Consensus       113 ~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          113 DLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             ECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             ECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence            55543 3333333 445555555555554 2333332 4455555555555555544432 4555555555555544322


Q ss_pred             hhHHhcccCcccchhccccC
Q 017094          230 HLFEEIEQLSLLRTLLIHSY  249 (377)
Q Consensus       230 ~~~~~l~~l~~L~~L~l~~~  249 (377)
                       ++. +..+++|+.|++++|
T Consensus       188 -~~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          188 -ISP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             -CGG-GGGCTTCCEEECTTS
T ss_pred             -Chh-hcCCCCCCEEEccCC
Confidence             111 344444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.4e-17  Score=147.02  Aligned_cols=197  Identities=22%  Similarity=0.247  Sum_probs=136.4

Q ss_pred             CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChh-hcCCCcccE
Q 017094           95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKS-ICELQSLQT  172 (377)
Q Consensus        95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~  172 (377)
                      ..++++++++.....    +..+  ..+++.|++++|.+..++. .+..+++|++|++++| .+..+|.. +..+++|++
T Consensus        17 ~~~~l~~~~~~l~~i----p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI----PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTTSCCSSC----CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCE
T ss_pred             CCCEEEccCCCCCcc----CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCE
Confidence            466777776654321    1111  2578888888888887764 6788888888888875 45566554 467888888


Q ss_pred             EeccCccccccCc-hhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094          173 LDLEGCLELEELP-KDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       173 L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      |++++|. +..+| ..+..+++|++|++++|.+...+ ..+..+++|+.|++++|......+..++.+++|+.|++++|.
T Consensus        90 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           90 LWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             EECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            8888874 44554 44678888888888888887664 446788889999988886544333346677788888877765


Q ss_pred             CCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccC
Q 017094          251 DRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKL  320 (377)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~  320 (377)
                      ..                   .++...+ ..+++|++|++++|. +..+|. .+..+++|+.|++++|+..
T Consensus       169 l~-------------------~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          169 LK-------------------RVPEGAF-DKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CS-------------------CCCTTTT-TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             Cc-------------------EeChhHh-ccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCCee
Confidence            32                   3333211 567888999998875 444544 4678888999999888643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=6.6e-18  Score=150.59  Aligned_cols=129  Identities=22%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEe
Q 017094          118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVF  197 (377)
Q Consensus       118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L  197 (377)
                      .++++++.++++++.+..+|..+.  +++++|++++|......+..+..+++|++|++++| .+..++.. ..+++|+.|
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence            344455555555555555554432  45555555544322222344555555555555554 23333322 445555555


Q ss_pred             eecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094          198 ALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       198 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      ++++|.+...+..+..+++|+.|++++|+.....+..+..+++|+.|++++|.
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence            55555555544445555555555555554332222334455555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.75  E-value=7.6e-19  Score=161.89  Aligned_cols=241  Identities=12%  Similarity=0.067  Sum_probs=128.1

Q ss_pred             hhhhcccCCceEEEeecCCchh-hHHHHHHHhhccC-cccEEEeCCCccccC-CcCcCCC-----CccceEeccCCCccc
Q 017094           87 SSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQ-FLRVLNLRESALEVC-PRKMGNL-----KHMRYLDLSRNSKIK  158 (377)
Q Consensus        87 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~-~L~~L~L~~~~~~~l-~~~~~~l-----~~L~~L~l~~~~~~~  158 (377)
                      +..+...++|++|++++|.+.. ....+...+..++ +|++|++++|.+... +..+..+     ++|++|++++|....
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY   94 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence            4334444557777777776542 2233335566666 777777777776643 3333333     677777777664322


Q ss_pred             ccChh----hcCC-CcccEEeccCccccccCchhh----cc-cccccEeeecCcccccC-----cccCCCCC-CCCEEEc
Q 017094          159 KLPKS----ICEL-QSLQTLDLEGCLELEELPKDI----RY-LVILRVFALTTKQKSLQ-----ESGIRSLG-SLRCLTI  222 (377)
Q Consensus       159 ~l~~~----~~~l-~~L~~L~l~~~~~~~~~p~~l----~~-l~~L~~L~l~~~~~~~~-----~~~l~~l~-~L~~L~l  222 (377)
                      ..+..    +..+ ++|++|++++|......+..+    .. .++|++|++++|.+...     +..+..++ +|++|++
T Consensus        95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L  174 (362)
T 3goz_A           95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL  174 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence            33332    3333 677777777764322222222    23 24777777777766632     12233443 7777777


Q ss_pred             cCCCCchhhHH----hcccC-cccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCC
Q 017094          223 SGCRDLEHLFE----EIEQL-SLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFM  297 (377)
Q Consensus       223 ~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~  297 (377)
                      ++|......+.    .+..+ ++|+.|++++|....              .+...++..+. ...++|++|++++|....
T Consensus       175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~--------------~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL--------------KSYAELAYIFS-SIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG--------------SCHHHHHHHHH-HSCTTCCEEECCSSCCCC
T ss_pred             cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh--------------hHHHHHHHHHh-cCCCCceEEECcCCCCCc
Confidence            77765433332    33344 366666666665432              11112343331 123467777777664322


Q ss_pred             CC----CccCCCCccCceecccCccc-------CCCCCcCCCCCCCcCeeeccCCC
Q 017094          298 AL----PGSLKDLEALETLAIRGCPK-------LSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       298 ~l----~~~~~~l~~L~~L~l~~~~~-------~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      .-    ...+..+++|++|++++|..       ...++..+..+++|++|++++++
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            11    22345666677777776641       11233345566667777776664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=3.8e-17  Score=147.23  Aligned_cols=228  Identities=14%  Similarity=0.140  Sum_probs=165.7

Q ss_pred             CcccEEEeCCCcccc--CCc--CcCCCCccceEeccCCCcccccChhh--cCCCcccEEeccCccccccCc----hhhcc
Q 017094          121 QFLRVLNLRESALEV--CPR--KMGNLKHMRYLDLSRNSKIKKLPKSI--CELQSLQTLDLEGCLELEELP----KDIRY  190 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~--l~~--~~~~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~p----~~l~~  190 (377)
                      ..++.+.+.++.+..  +..  ....+++|++|++++|......|..+  ..+++|++|++++|......+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            457888888877641  111  12234679999999886666777776  889999999999985444333    34467


Q ss_pred             cccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchh--hHHh--cccCcccchhccccCCCCccCCCccceEEec
Q 017094          191 LVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEH--LFEE--IEQLSLLRTLLIHSYDDRKNTRPRLRRVFIK  265 (377)
Q Consensus       191 l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~--l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~  265 (377)
                      +++|++|++++|.+...+ ..++.+++|++|++++|+....  ++..  ++.+++|++|++++|....            
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------  211 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET------------  211 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC------------
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc------------
Confidence            899999999999998664 6788999999999999986543  3322  3678889999998875421            


Q ss_pred             ccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCC---ccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          266 EITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL---EALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       266 ~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                          +...+.+++ ..+++|++|++++|......|..+..+   ++|++|++++|. ++.+|..+.  ++|++|++++|.
T Consensus       212 ----l~~~~~~l~-~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~  283 (310)
T 4glp_A          212 ----PTGVCAALA-AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNR  283 (310)
T ss_dssp             ----HHHHHHHHH-HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCC
T ss_pred             ----hHHHHHHHH-hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCc
Confidence                112222222 567999999999988655557777665   799999999984 568887664  899999999995


Q ss_pred             CccccCCCCCCCCCCCCCccceEEeCCCccCCC
Q 017094          343 ALSERCKPPTGEDWPKIAHITQIELDDEIIKSS  375 (377)
Q Consensus       343 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  375 (377)
                       ++..+.      ...+.+++.+.+.++++...
T Consensus       284 -l~~~~~------~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          284 -LNRAPQ------PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             -CCSCCC------TTSCCCCSCEECSSTTTSCC
T ss_pred             -CCCCch------hhhCCCccEEECcCCCCCCC
Confidence             343322      33568889999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=1.6e-18  Score=170.16  Aligned_cols=158  Identities=12%  Similarity=0.029  Sum_probs=77.2

Q ss_pred             CchhhcccccccEeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhcccc----------CCC
Q 017094          184 LPKDIRYLVILRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHS----------YDD  251 (377)
Q Consensus       184 ~p~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~  251 (377)
                      +|..+..+++|++|++++|.++...  ..+..+++|+.|++.++.....++.....+++|++|++++          |..
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL  364 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence            3444455556666666655533211  2235566666666653222222233334556666666663          333


Q ss_pred             Cc--------cCCCccceEEecccccccccchhhhhcCCCCccEEeecC---CCCCCCCC------ccCCCCccCceecc
Q 017094          252 RK--------NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGD---CPNFMALP------GSLKDLEALETLAI  314 (377)
Q Consensus       252 ~~--------~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~---~~~~~~l~------~~~~~l~~L~~L~l  314 (377)
                      .+        ..+++|++|++. +..+.......+...+++|++|++++   |..+...|      ..+.++++|++|++
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L  443 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF  443 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             cCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence            22        224566666663 23332222112223466777777763   33343322      12345777777777


Q ss_pred             cCccc-CC-CCCcC-CCCCCCcCeeeccCCC
Q 017094          315 RGCPK-LS-SLPED-MHHLTTLKLLAIGGCP  342 (377)
Q Consensus       315 ~~~~~-~~-~~~~~-l~~l~~L~~L~l~~c~  342 (377)
                      +.|.. ++ ..+.. ...+++|+.|++++|.
T Consensus       444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~  474 (592)
T 3ogk_B          444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG  474 (592)
T ss_dssp             ECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred             ecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence            65542 22 11111 1346778888888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=1.2e-17  Score=144.76  Aligned_cols=198  Identities=14%  Similarity=0.132  Sum_probs=142.7

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCc-cccCCc-CcCCCCccceEeccCCCcccccC-hhhcCCCcc
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESA-LEVCPR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSL  170 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L  170 (377)
                      ++++.|++++|....   ..+..+..+++|++|++++|. +..++. .+..+++|++|++++|..+..+| ..+..+++|
T Consensus        31 ~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             CcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            478889988886542   223357788899999999996 877765 67889999999998734666665 467789999


Q ss_pred             cEEeccCccccccCchhhccccccc---EeeecCc-ccccCc-ccCCCCCCCC-EEEccCCCCchhhHHhcccCcccchh
Q 017094          171 QTLDLEGCLELEELPKDIRYLVILR---VFALTTK-QKSLQE-SGIRSLGSLR-CLTISGCRDLEHLFEEIEQLSLLRTL  244 (377)
Q Consensus       171 ~~L~l~~~~~~~~~p~~l~~l~~L~---~L~l~~~-~~~~~~-~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L  244 (377)
                      ++|++++| .+..+|. +..+++|+   .|++++| .+...+ ..+..+++|+ .|++++|... .++......++|+.|
T Consensus       108 ~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L  184 (239)
T 2xwt_C          108 KFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV  184 (239)
T ss_dssp             CEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE
T ss_pred             CEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE
Confidence            99999987 4566776 77788887   9999998 777654 4578899999 9999887654 444332223566666


Q ss_pred             ccccCCCCccCCCccceEEecccccccccchhhhhcCC-CCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094          245 LIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCT-DTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK  319 (377)
Q Consensus       245 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  319 (377)
                      ++++|.                  .+..++...+ ..+ ++|++|++++|. +..+|..  .+++|+.|++.++..
T Consensus       185 ~L~~n~------------------~l~~i~~~~~-~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          185 YLNKNK------------------YLTVIDKDAF-GGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             ECTTCT------------------TCCEECTTTT-TTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC--
T ss_pred             EcCCCC------------------CcccCCHHHh-hccccCCcEEECCCCc-cccCChh--HhccCceeeccCccC
Confidence            666553                  2335554333 566 899999999865 5567754  788999999988753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=2e-16  Score=138.01  Aligned_cols=176  Identities=16%  Similarity=0.128  Sum_probs=110.2

Q ss_pred             CcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeec
Q 017094          121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT  200 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~  200 (377)
                      ...+.++++++.+..+|..+.  ++++.|++++|......+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            346777788877777776654  577888888664333344457777888888888764433344456777788888888


Q ss_pred             CcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccch-hhh
Q 017094          201 TKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQ-WLL  278 (377)
Q Consensus       201 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~  278 (377)
                      +|.++..+ ..+..+++|+.|++++|......+..+..+++|+.|++++|...                   .++. .+ 
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------~~~~~~~-  151 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------------------SIPAGAF-  151 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTT-
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-------------------ccCHHHc-
Confidence            87777654 34567777777777777544322233455666666666655322                   2333 22 


Q ss_pred             hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094          279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK  319 (377)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  319 (377)
                       ..+++|++|++++|......+..+..+++|++|++++|+.
T Consensus       152 -~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          152 -DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             -TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             -CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence             4556677777776653333333566677777777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=8.7e-17  Score=147.36  Aligned_cols=215  Identities=16%  Similarity=0.172  Sum_probs=155.5

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccC-chhhcccccccEe
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L  197 (377)
                      .++++|+|++|.++.+|. ++.++++|++|++++|...+.+|. ++..++++.++...++..+..+ |..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            578888888888888775 578888888888887755565654 4567777776544443455555 4557888888888


Q ss_pred             eecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHH-hcccC-cccchhccccCCCCc-----cCCCccceEEeccccc
Q 017094          198 ALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFE-EIEQL-SLLRTLLIHSYDDRK-----NTRPRLRRVFIKEITQ  269 (377)
Q Consensus       198 ~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l-~~L~~L~l~~~~~~~-----~~~~~L~~L~l~~~~~  269 (377)
                      ++++|.+...+ ..+....++..+++.++..+..++. .+..+ ..++.|++++|....     +...++++|.+.++..
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            88888887654 2344566677788777655554443 34444 357788888876544     2345788888888888


Q ss_pred             ccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccC
Q 017094          270 LLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGG  340 (377)
Q Consensus       270 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  340 (377)
                      +..+|...+ ..+++|++|++++|. +..+|.  ..+.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus       190 l~~i~~~~f-~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          190 LEELPNDVF-HGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCCTTTT-TTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             ccCCCHHHh-ccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            889987554 678999999999975 677775  3467788888888888888885 78899999998864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.71  E-value=6.7e-19  Score=172.82  Aligned_cols=109  Identities=13%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc-----CCcCcCCC
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV-----CPRKMGNL  143 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~l  143 (377)
                      +++++|.+.++.+....+......+++|++|++.+|.. .....+...+..+++|++|++++|.+..     ++.....+
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            48899999988765544333333689999999988732 2344466667788999999999988653     33344467


Q ss_pred             CccceEeccCCC-ccc--ccChhhcCCCcccEEeccCc
Q 017094          144 KHMRYLDLSRNS-KIK--KLPKSICELQSLQTLDLEGC  178 (377)
Q Consensus       144 ~~L~~L~l~~~~-~~~--~l~~~~~~l~~L~~L~l~~~  178 (377)
                      ++|++|++++|. .+.  .++..+..+++|++|++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            788888888764 111  22222344677777777766

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=6.8e-18  Score=155.51  Aligned_cols=248  Identities=16%  Similarity=0.138  Sum_probs=164.4

Q ss_pred             HHHHHHhhccCcccEEEeCCCccccCC-----cCcCCCC-ccceEeccCCCcccccChhhcCC-----CcccEEeccCcc
Q 017094          111 SFVESCFSKSQFLRVLNLRESALEVCP-----RKMGNLK-HMRYLDLSRNSKIKKLPKSICEL-----QSLQTLDLEGCL  179 (377)
Q Consensus       111 ~~~~~~~~~~~~L~~L~L~~~~~~~l~-----~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~  179 (377)
                      ..++.++...++|++|++++|.+...+     ..+..++ +|++|++++|......+..+..+     ++|++|++++|.
T Consensus        12 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           12 NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            345566667777999999999988665     5677788 89999999875444445555554     899999999985


Q ss_pred             ccccCchh----hccc-ccccEeeecCcccccCcc-----cCCC-CCCCCEEEccCCCCch----hhHHhcccCc-ccch
Q 017094          180 ELEELPKD----IRYL-VILRVFALTTKQKSLQES-----GIRS-LGSLRCLTISGCRDLE----HLFEEIEQLS-LLRT  243 (377)
Q Consensus       180 ~~~~~p~~----l~~l-~~L~~L~l~~~~~~~~~~-----~l~~-l~~L~~L~l~~~~~~~----~~~~~l~~l~-~L~~  243 (377)
                      .....+..    +..+ ++|+.|++++|.++..+.     .+.. .++|++|++++|....    .++..+..++ +|++
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence            44444443    3444 899999999998876532     2344 4689999999987653    4455556665 7888


Q ss_pred             hccccCCCCccCCCccceEEecccccccccchhhhhcCC-CCccEEeecCCCCCCC----CCccCCC-CccCceecccCc
Q 017094          244 LLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCT-DTLHTLVIGDCPNFMA----LPGSLKD-LEALETLAIRGC  317 (377)
Q Consensus       244 L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~----l~~~~~~-l~~L~~L~l~~~  317 (377)
                      |++++|....              .....+...+  ..+ ++|++|++++|.....    ++..+.. .++|++|++++|
T Consensus       172 L~Ls~n~l~~--------------~~~~~l~~~l--~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          172 LNLRGNNLAS--------------KNCAELAKFL--ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             EECTTSCGGG--------------SCHHHHHHHH--HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             eeecCCCCch--------------hhHHHHHHHH--HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence            8887775432              1111222233  345 5999999999863321    4444544 459999999998


Q ss_pred             ccCCCC----CcCCCCCCCcCeeeccCCC--CccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094          318 PKLSSL----PEDMHHLTTLKLLAIGGCP--ALSERCKPPTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       318 ~~~~~~----~~~l~~l~~L~~L~l~~c~--~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      .....-    ...+..+++|+.|++++|.  .++..........+....++..+.+.++.+..
T Consensus       236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            543322    2445788999999999986  22222111122234456667777777777764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=2e-16  Score=141.12  Aligned_cols=168  Identities=18%  Similarity=0.249  Sum_probs=91.9

Q ss_pred             ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEee
Q 017094          119 KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFA  198 (377)
Q Consensus       119 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  198 (377)
                      .+++|+.|++++|.+..++ .+..+++|++|++++| .+..++. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred             hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEE
Confidence            3455666666666555553 3555566666666654 3444444 556666666666654 333333 255666666666


Q ss_pred             ecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhh
Q 017094          199 LTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL  278 (377)
Q Consensus       199 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  278 (377)
                      +++|.+... +.+..+++|+.|++++|.... + ..+..+++|+.|++++|...                   .++. + 
T Consensus       119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~-------------------~~~~-l-  174 (291)
T 1h6t_A          119 LEHNGISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQIS-------------------DIVP-L-  174 (291)
T ss_dssp             CTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-------------------CCGG-G-
T ss_pred             CCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccc-------------------cchh-h-
Confidence            666665554 345556666666666655332 2 34555555555555554322                   2222 2 


Q ss_pred             hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcc
Q 017094          279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP  318 (377)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~  318 (377)
                       ..+++|+.|++++|. +..++. +..+++|+.|++++|+
T Consensus       175 -~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          175 -AGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -TTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             -cCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcCCc
Confidence             455666666666653 344443 5666667777766664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=5e-16  Score=135.46  Aligned_cols=176  Identities=17%  Similarity=0.182  Sum_probs=137.6

Q ss_pred             CccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEc
Q 017094          144 KHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTI  222 (377)
Q Consensus       144 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l  222 (377)
                      ...+++++++ ..+..+|..+.  +++++|++++|......+..+..+++|++|++++|.+...+ ..+..+++|+.|++
T Consensus        14 ~~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4678899986 47888887654  68999999998555555567899999999999999998765 45789999999999


Q ss_pred             cCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-
Q 017094          223 SGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-  301 (377)
Q Consensus       223 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-  301 (377)
                      ++|......+..+..+++|+.|++++|...                   .++...+ ..+++|++|++++|. +..++. 
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~  149 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-------------------SLPSGVF-DRLTKLKELRLNTNQ-LQSIPAG  149 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTT-TTCTTCCEEECCSSC-CCCCCTT
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCC-------------------CcChhHh-ccCCcccEEECcCCc-CCccCHH
Confidence            998866544455778888888888887543                   3443322 678999999999986 445554 


Q ss_pred             cCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094          302 SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA  343 (377)
Q Consensus       302 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  343 (377)
                      .+..+++|++|++++|......+..+..+++|+.|++.+|+-
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            688999999999999855444345688999999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=7.8e-18  Score=165.25  Aligned_cols=151  Identities=15%  Similarity=0.098  Sum_probs=95.5

Q ss_pred             CCCcEEEEEeccccc-c-------------chhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCC-cc
Q 017094           69 KRVRHLSFAAANALR-N-------------DFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRES-AL  133 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~-~-------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~  133 (377)
                      +++++|.+.++.... .             .+......+++|++|+++++...  ...+......+++|++|++++| .+
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            478999998864221 1             12334567899999999988643  3334444447899999999998 45


Q ss_pred             cc--CCcCcCCCCccceEeccCCCccc----ccChhhcCCCcccEEeccCcc-cc--ccCchhhcccccccEeeecCc-c
Q 017094          134 EV--CPRKMGNLKHMRYLDLSRNSKIK----KLPKSICELQSLQTLDLEGCL-EL--EELPKDIRYLVILRVFALTTK-Q  203 (377)
Q Consensus       134 ~~--l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~-~~--~~~p~~l~~l~~L~~L~l~~~-~  203 (377)
                      ..  ++..+..+++|++|++++|....    .++.....+++|++|++++|. .+  ..++..+..+++|+.|++++| .
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            43  55555678999999999875222    233333467899999999874 11  112233456788999999877 2


Q ss_pred             cccCcccCCCCCCCCEEE
Q 017094          204 KSLQESGIRSLGSLRCLT  221 (377)
Q Consensus       204 ~~~~~~~l~~l~~L~~L~  221 (377)
                      ....+..+..+++|+.|+
T Consensus       224 ~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEE
T ss_pred             HHHHHHHHhcCCcceEcc
Confidence            222223333444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=1.2e-15  Score=139.79  Aligned_cols=217  Identities=17%  Similarity=0.117  Sum_probs=164.8

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccE-eeec
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRV-FALT  200 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~-L~l~  200 (377)
                      +.++-+++.++.+|..+  .+++++|++++| .++.+|. +|..+++|++|++++|...+.+|. .+.++++++. +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56777888888898776  368999999976 6788875 588999999999999866666665 4678888765 5666


Q ss_pred             CcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc--------cCCCccceEEeccccccc
Q 017094          201 TKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK--------NTRPRLRRVFIKEITQLL  271 (377)
Q Consensus       201 ~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------~~~~~L~~L~l~~~~~~~  271 (377)
                      +|.+... +..+..+++|+.|++++|......+..+....++..+++.++....        .....++.|+++++ .+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-ccc
Confidence            7777765 4678899999999999987544333334455567777776654333        12246888999886 556


Q ss_pred             ccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCC
Q 017094          272 ELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCK  349 (377)
Q Consensus       272 ~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  349 (377)
                      .++...  ....+|++|++.++..++.+|. .+..+++|++|++++| .++.+|..  .+.+|+.|.+.+|..++..+.
T Consensus       168 ~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          168 EIHNSA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             EECTTS--STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred             CCChhh--ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC
Confidence            777766  4557899999998888888886 5689999999999998 67778853  467888888888888887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=8.1e-16  Score=150.22  Aligned_cols=169  Identities=18%  Similarity=0.243  Sum_probs=90.2

Q ss_pred             ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEee
Q 017094          119 KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFA  198 (377)
Q Consensus       119 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  198 (377)
                      .+.+|+.|+++++.+..++ .+..+++|+.|++++| .+..+++ +..+++|+.|++++| .+..+| .+..+++|+.|+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred             cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence            4455566666666555554 3555566666666644 3444443 555666666666654 333333 455566666666


Q ss_pred             ecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhh
Q 017094          199 LTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL  278 (377)
Q Consensus       199 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  278 (377)
                      +++|.+... +.+..+++|+.|++++|.... + ..+..+++|+.|++++|...                   .++. + 
T Consensus       116 Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-------------------~~~~-l-  171 (605)
T 1m9s_A          116 LEHNGISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQIS-------------------DIVP-L-  171 (605)
T ss_dssp             CTTSCCCCC-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCC-------------------CCGG-G-
T ss_pred             ecCCCCCCC-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCC-------------------Cchh-h-
Confidence            666655554 345556666666666654332 1 34455555555555554322                   2222 2 


Q ss_pred             hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094          279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK  319 (377)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  319 (377)
                       ..+++|+.|++++|. +..++ .+..+++|+.|+|++|..
T Consensus       172 -~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          172 -AGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             -TTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             -ccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCcC
Confidence             455666666666653 33343 355666666666666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.65  E-value=8.4e-16  Score=148.63  Aligned_cols=184  Identities=18%  Similarity=0.183  Sum_probs=91.2

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT  201 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  201 (377)
                      +|+.|+++++.+..+|..+.  ++|++|++++| .+..+|   ..+++|++|++++| .+..+|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            56666666666665555442  55666666654 444555   34566666666665 3344554 433  566666666


Q ss_pred             cccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCcc--CCCccceEEecccccccccchhhhh
Q 017094          202 KQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKN--TRPRLRRVFIKEITQLLELPQWLLQ  279 (377)
Q Consensus       202 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~  279 (377)
                      |.++.+|.   .+++|+.|++++|.... +|.   .+++|+.|++++|.....  ..++|+.|+++++ .+..+|. +..
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N-~L~~lp~-~~~  200 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-LLESLPA-VPV  200 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-CC-
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCC-CCCchhh-HHH
Confidence            66665543   45666666666655322 322   344555555555432210  0123333444333 2223433 200


Q ss_pred             ---cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCc
Q 017094          280 ---CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPE  325 (377)
Q Consensus       280 ---~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  325 (377)
                         ...+.|+.|++++|. +..+|..+..+++|+.|++++|+..+.+|.
T Consensus       201 ~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             -------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence               011122666666653 445666555566666666666654444333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=5.1e-16  Score=130.22  Aligned_cols=151  Identities=16%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             CCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCccccc-CcccCCCCCCCCE
Q 017094          141 GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSL-QESGIRSLGSLRC  219 (377)
Q Consensus       141 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~  219 (377)
                      ..+++|++|++++| .+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .+..++.+++|+.
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            56678888888865 556666 5778888888888877 444443 57778888888888887774 3466777788888


Q ss_pred             EEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCC
Q 017094          220 LTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL  299 (377)
Q Consensus       220 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l  299 (377)
                      |++++|......+..++.+++|+.|++++|...                  .+++ .+  ..+++|++|++++|. +..+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i------------------~~~~-~l--~~l~~L~~L~l~~n~-i~~~  174 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAI------------------TDIM-PL--KTLPELKSLNIQFDG-VHDY  174 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC------------------CCCG-GG--GGCSSCCEEECTTBC-CCCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCc------------------cccH-hh--cCCCCCCEEECCCCC-CcCh
Confidence            888877766656666666666666666665421                  1333 22  455666666666654 3333


Q ss_pred             CccCCCCccCceecccCcc
Q 017094          300 PGSLKDLEALETLAIRGCP  318 (377)
Q Consensus       300 ~~~~~~l~~L~~L~l~~~~  318 (377)
                      + .+..+++|++|++++|.
T Consensus       175 ~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          175 R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             T-TGGGCSSCCEEEECBC-
T ss_pred             H-HhccCCCCCEEEeeCcc
Confidence            3 44556666666666553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.63  E-value=2.3e-15  Score=134.17  Aligned_cols=167  Identities=19%  Similarity=0.240  Sum_probs=114.4

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      ++++|.+.++.+....   .+..+++|++|++++|......    . +..+++|++|++++|.+..++. +..+++|++|
T Consensus        47 ~L~~L~l~~~~i~~~~---~~~~l~~L~~L~L~~n~l~~~~----~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIK----P-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             TCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             cccEEEccCCCcccCh---hHhcCCCCCEEEccCCccCCCc----c-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence            6777777776665532   4677788888888777654221    1 6777788888888887776543 7777888888


Q ss_pred             eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094          150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE  229 (377)
Q Consensus       150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  229 (377)
                      ++++| .+..++ .+..+++|++|++++| .+..+ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|....
T Consensus       118 ~L~~n-~i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          118 SLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ECTTS-CCCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             ECCCC-cCCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence            88765 455553 4677788888888776 44444 457777888888888887776644 7777888888887776433


Q ss_pred             hhHHhcccCcccchhccccCCCC
Q 017094          230 HLFEEIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       230 ~~~~~l~~l~~L~~L~l~~~~~~  252 (377)
                       ++ .+..+++|+.|++++|...
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             -Ch-hhccCCCCCEEECcCCccc
Confidence             32 3666777777777766543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=2.8e-15  Score=126.84  Aligned_cols=178  Identities=20%  Similarity=0.208  Sum_probs=105.9

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEeeecC
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALTT  201 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~  201 (377)
                      +.++.+++.+..+|..+  .++|++|++++| .+..++. .+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence            45555666666665443  346777777755 3344433 3556677777777765 3344443 346677777777777


Q ss_pred             cccccCcc-cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhc
Q 017094          202 KQKSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQC  280 (377)
Q Consensus       202 ~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~  280 (377)
                      |.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|...                   .++...+ .
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------------------~~~~~~~-~  145 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------------------SVPDGVF-D  145 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------CCCTTTT-T
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------------------eeCHHHh-c
Confidence            76665543 3566777777777776544322333556666666666665432                   2332211 5


Q ss_pred             CCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCC
Q 017094          281 CTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTT  332 (377)
Q Consensus       281 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  332 (377)
                      .+++|++|++++|.       +.+.+++|+.|+++.|.....+|..++.++.
T Consensus       146 ~l~~L~~L~l~~N~-------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          146 RLTSLQYIWLHDNP-------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TCTTCCEEECCSCC-------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cCCCccEEEecCCC-------eecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            56778888887764       2345667888888887766677776655544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=4.2e-15  Score=124.59  Aligned_cols=147  Identities=14%  Similarity=0.154  Sum_probs=84.7

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCcccc-CCcCcCCCCccce
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEV-CPRKMGNLKHMRY  148 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~l~~L~~  148 (377)
                      ++++|.+.++.+...  + .+..+++|++|++++|.....     ..+..+++|++|++++|.+.. .+..++.+++|++
T Consensus        45 ~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           45 SLTYITLANINVTDL--T-GIEYAHNIKDLTINNIHATNY-----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             TCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESCCCSCC-----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             CccEEeccCCCccCh--H-HHhcCCCCCEEEccCCCCCcc-----hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            566666666555532  2 355666666666666533211     135556666666666666653 4555666666666


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCC
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~  226 (377)
                      |++++|......|..++.+++|++|++++|..+..+| .+..+++|+.|++++|.+...+ .+..+++|+.|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            6666553333445556666666666666654355554 4566666666666666665543 55556666666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=1.8e-15  Score=128.06  Aligned_cols=128  Identities=24%  Similarity=0.281  Sum_probs=67.8

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEe
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L  197 (377)
                      ++|++|+++++.+..++. .+..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|. .+..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence            355666666666554443 2455666666666654 3333333 24556666666666552 333333 34556666666


Q ss_pred             eecCcccccCcc-cCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094          198 ALTTKQKSLQES-GIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       198 ~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      ++++|.+...+. .+..+++|+.|++++|......+..+..+++|+.|++++|+
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            666666554432 24556666666666655432222234555566666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.60  E-value=4.5e-15  Score=144.97  Aligned_cols=169  Identities=18%  Similarity=0.250  Sum_probs=136.3

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccce
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRY  148 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~  148 (377)
                      +.++.|.+.++.+....   .+..+++|+.|++++|.+.....     +..+++|+.|+|++|.+..+| .+..+++|++
T Consensus        43 ~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             CCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh-----hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            37788888877766543   58889999999999987653221     788999999999999998776 7888999999


Q ss_pred             EeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCc
Q 017094          149 LDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       149 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  228 (377)
                      |++++| .+..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.+...++ +..+++|+.|++++|...
T Consensus       114 L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          114 LSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EECTTS-CCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EEecCC-CCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence            999976 556654 4888999999999987 45555 568899999999999999887755 889999999999998754


Q ss_pred             hhhHHhcccCcccchhccccCCCCc
Q 017094          229 EHLFEEIEQLSLLRTLLIHSYDDRK  253 (377)
Q Consensus       229 ~~~~~~l~~l~~L~~L~l~~~~~~~  253 (377)
                      . + ..+..+++|+.|++++|....
T Consensus       189 ~-l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          189 D-L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             B-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             C-C-hHHccCCCCCEEEccCCcCcC
Confidence            4 3 457888999999999887655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=1.1e-15  Score=147.79  Aligned_cols=185  Identities=19%  Similarity=0.242  Sum_probs=110.5

Q ss_pred             CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094           95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD  174 (377)
Q Consensus        95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  174 (377)
                      +++.|++++|.+..    ++..+  +++|++|++++|.+..+|   ..+++|++|++++| .+..+|. +..  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~----lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS----LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC----CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc----cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEE
Confidence            66666666654432    11111  255666666666666665   34566666666654 4444555 433  666666


Q ss_pred             ccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCcc
Q 017094          175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKN  254 (377)
Q Consensus       175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  254 (377)
                      +++| .+..+|.   .+++|+.|++++|.++.++.   .+++|+.|++++|.... +|. +.  ++|+.|++++|.....
T Consensus       127 Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          127 VDNN-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             CCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred             CCCC-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence            6665 3444554   45666666666666665543   45666666666665332 444 33  5666666666654321


Q ss_pred             --CCCcc-------ceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCC
Q 017094          255 --TRPRL-------RRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDL  306 (377)
Q Consensus       255 --~~~~L-------~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l  306 (377)
                        .+.+|       +.|+++++ .+..+|..+  ..+++|+.|++++|......|..+..+
T Consensus       196 p~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          196 PAVPVRNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCCC--------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhHHHhhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence              11245       88888876 455788888  569999999999998766666655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=2.8e-17  Score=159.54  Aligned_cols=194  Identities=14%  Similarity=0.113  Sum_probs=117.6

Q ss_pred             hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCC-------------cccccChhhcCCCcccEEe-ccCcccccc
Q 017094          118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNS-------------KIKKLPKSICELQSLQTLD-LEGCLELEE  183 (377)
Q Consensus       118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------~~~~l~~~~~~l~~L~~L~-l~~~~~~~~  183 (377)
                      ..+++|+.|+|++|.+..+|..++.+++|+.|++++|.             .....|..++.+++|+.|+ ++.+ .+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence            34566777777777777777777777777777775432             2234455566677777776 4332 2222


Q ss_pred             Cch------hhcc--cccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccC
Q 017094          184 LPK------DIRY--LVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNT  255 (377)
Q Consensus       184 ~p~------~l~~--l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  255 (377)
                      ++.      .+..  ...|+.|++++|.++..|. ++.+++|+.|++++|... .+|..++.+++|+.|++++|...   
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---  499 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---  499 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC---
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC---
Confidence            211      1111  1246777777777776654 777777777777776544 56666777777777777665432   


Q ss_pred             CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCC-CccCCCCccCceecccCcccCCCCCcCC----CCC
Q 017094          256 RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMAL-PGSLKDLEALETLAIRGCPKLSSLPEDM----HHL  330 (377)
Q Consensus       256 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l  330 (377)
                                      .+| .+  ..+++|+.|++++|...... |..+..+++|+.|++++|.. +.+|...    ..+
T Consensus       500 ----------------~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~l  559 (567)
T 1dce_A          500 ----------------NVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEML  559 (567)
T ss_dssp             ----------------CCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHC
T ss_pred             ----------------CCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHC
Confidence                            344 33  66777777777776533332 67777777777777777743 3333322    226


Q ss_pred             CCcCeee
Q 017094          331 TTLKLLA  337 (377)
Q Consensus       331 ~~L~~L~  337 (377)
                      |+|+.|+
T Consensus       560 p~L~~L~  566 (567)
T 1dce_A          560 PSVSSIL  566 (567)
T ss_dssp             TTCSEEE
T ss_pred             cccCccC
Confidence            6777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=2.8e-15  Score=149.85  Aligned_cols=195  Identities=16%  Similarity=0.153  Sum_probs=121.2

Q ss_pred             CCCcEEEEEeccccccchhhhhcccCCceEEEeecCCch-hhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094           69 KRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEK-TSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR  147 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~  147 (377)
                      +.+++|++..+.+...  +........|+.+.+...... ......+..+..+..|+.|+|++|.+..+|..+..+++|+
T Consensus       173 ~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~  250 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT  250 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred             CccceEEeeCCCCCcc--hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence            4577777776655442  223334444444444332111 1112445678899999999999999999998888999999


Q ss_pred             eEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCC
Q 017094          148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~  227 (377)
                      +|+|++| .+..+|..++.+++|++|+|++| .+..+|..++.+++|++|++++|.+..+|..++.+++|+.|++++|..
T Consensus       251 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          251 RLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             EEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            9999986 66699999999999999999998 466899999999999999999999998888899999999999999998


Q ss_pred             chhhHHhcccCc-ccchhccccCCCCccCCCccceEEeccc
Q 017094          228 LEHLFEEIEQLS-LLRTLLIHSYDDRKNTRPRLRRVFIKEI  267 (377)
Q Consensus       228 ~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~L~~L~l~~~  267 (377)
                      ....+..+..+. .+..+++++|......+..|+.|++..+
T Consensus       329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD  369 (727)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred             CCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence            777777665543 2234778888777667778888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=4.3e-15  Score=130.38  Aligned_cols=162  Identities=16%  Similarity=0.189  Sum_probs=70.0

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ  203 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  203 (377)
                      ..++++++.+..++ .+..+++|++|++++| .+..++ .+..+++|++|++++| .+..++. +..+++|++|++++|.
T Consensus        22 ~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           22 VKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             HHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc
Confidence            33344444444333 3344444444444433 333333 3444444455554443 2333333 4444445555555544


Q ss_pred             cccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCC
Q 017094          204 KSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTD  283 (377)
Q Consensus       204 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~  283 (377)
                      +...+. +.. ++|+.|++++|.... + ..+..+++|+.|++++|...                   .++ .+  ..++
T Consensus        97 l~~l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~-------------------~~~-~l--~~l~  150 (263)
T 1xeu_A           97 LKNLNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLK-------------------SIV-ML--GFLS  150 (263)
T ss_dssp             CSCCTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCC-------------------BCG-GG--GGCT
T ss_pred             cCCcCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCC-------------------CCh-HH--ccCC
Confidence            444321 222 445555555544322 1 22444444444444444321                   111 12  3445


Q ss_pred             CccEEeecCCCCCCCCCccCCCCccCceecccCcc
Q 017094          284 TLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP  318 (377)
Q Consensus       284 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~  318 (377)
                      +|++|++++|.. ..+ ..+..+++|+.|++++|.
T Consensus       151 ~L~~L~L~~N~i-~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          151 KLEVLDLHGNEI-TNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TCCEEECTTSCC-CBC-TTSTTCCCCCEEEEEEEE
T ss_pred             CCCEEECCCCcC-cch-HHhccCCCCCEEeCCCCc
Confidence            555555555432 222 344555555555555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=2.6e-14  Score=116.54  Aligned_cols=133  Identities=16%  Similarity=0.138  Sum_probs=103.9

Q ss_pred             hccCcccEEEeCCCccc--cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccccc
Q 017094          118 SKSQFLRVLNLRESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR  195 (377)
Q Consensus       118 ~~~~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  195 (377)
                      ...++|+.|++++|.+.  .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            44578889999988887  788888888999999998764 5555 5678888999999988754444777777789999


Q ss_pred             EeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhhH---HhcccCcccchhccccCCCC
Q 017094          196 VFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLF---EEIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       196 ~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~  252 (377)
                      +|++++|.++..+  ..+..+++|+.|++++|......+   ..+..+++|+.|++++|...
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            9999999888764  678888999999998887543222   36778888999888887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.52  E-value=3.6e-14  Score=124.44  Aligned_cols=150  Identities=15%  Similarity=0.146  Sum_probs=103.7

Q ss_pred             hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC
Q 017094           89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ  168 (377)
Q Consensus        89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~  168 (377)
                      .+..+++|+.|++++|.....    + .+..+++|++|++++|.+..++. +..+++|++|++++| .+..+|.. .. +
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l----~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~  106 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSL----A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-A  106 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-S
T ss_pred             chhhcCcCcEEECcCCCcccc----h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-C
Confidence            356677788888877755422    1 46677788888888887777765 777788888888865 55556543 33 7


Q ss_pred             cccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhcccc
Q 017094          169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHS  248 (377)
Q Consensus       169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  248 (377)
                      +|++|++++| .+..++ .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.....  ..+..+++|+.|++++
T Consensus       107 ~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          107 CLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             SCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             cccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence            7888888876 445554 4777788888888888777663 677778888888887765443  4566677777777776


Q ss_pred             CCCC
Q 017094          249 YDDR  252 (377)
Q Consensus       249 ~~~~  252 (377)
                      |...
T Consensus       182 N~~~  185 (263)
T 1xeu_A          182 QKCV  185 (263)
T ss_dssp             EEEE
T ss_pred             Cccc
Confidence            6543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.52  E-value=9.9e-14  Score=118.30  Aligned_cols=130  Identities=22%  Similarity=0.302  Sum_probs=78.9

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchh-hcccccccEee
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFA  198 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~  198 (377)
                      +.|+.|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++| .+..+|.. +..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence            466777777777665543 5666677777777765333233556666777777777765 34455443 45666777777


Q ss_pred             ecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094          199 LTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD  251 (377)
Q Consensus       199 l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  251 (377)
                      +++|.+... +..+..+++|+.|++++|......+..+..+++|+.|++++|+.
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            777766654 34566666777777766654433333455566666666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=3.2e-14  Score=113.52  Aligned_cols=128  Identities=14%  Similarity=0.097  Sum_probs=102.6

Q ss_pred             hccCcccEEEeCCCccc--cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccccc
Q 017094          118 SKSQFLRVLNLRESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILR  195 (377)
Q Consensus       118 ~~~~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  195 (377)
                      ...++|+.|++++|.+.  .+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            34578999999999987  78888889999999999976 55555 6688899999999998854444788788899999


Q ss_pred             EeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhhH---HhcccCcccchhccc
Q 017094          196 VFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLF---EEIEQLSLLRTLLIH  247 (377)
Q Consensus       196 ~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  247 (377)
                      +|++++|.++..+  ..+..+++|+.|++++|......+   ..+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999999888753  678889999999999987543322   357788888888875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.50  E-value=1.5e-13  Score=117.23  Aligned_cols=99  Identities=21%  Similarity=0.269  Sum_probs=51.4

Q ss_pred             ceEeccCCCcccccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccC
Q 017094          147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISG  224 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~  224 (377)
                      +.++.++ ..+..+|..+.  ++|++|++++|. +..++ ..+..+++|+.|++++|.+... +..+..+++|+.|++++
T Consensus        14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTT-SCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCC-CCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            4556654 35556665432  566677776653 33333 3456666666666666666543 34556666666666666


Q ss_pred             CCCchhhHHhcccCcccchhccccC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSY  249 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~  249 (377)
                      |.....-+..+..+++|+.|++++|
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcCCccCHhHccCCCCCCEEECCCC
Confidence            5433211112334444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=116.85  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=82.2

Q ss_pred             CcccEEEeCCCccccCC--cCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEe
Q 017094          121 QFLRVLNLRESALEVCP--RKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L  197 (377)
                      ..+++|++++|.+..++  ..+..+++|++|++++| .+..++ ..+..+++|++|++++|......+..+..+++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            34567777777776553  23667777777777765 344443 356677777777777764333334446677777777


Q ss_pred             eecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094          198 ALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD  251 (377)
Q Consensus       198 ~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  251 (377)
                      ++++|.+... +..+..+++|+.|++++|......+..+..+++|+.|++++|+.
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            7777776654 35566677777777777665544455666666677776666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.49  E-value=7e-14  Score=128.52  Aligned_cols=127  Identities=21%  Similarity=0.235  Sum_probs=72.2

Q ss_pred             CcccEEEeCCCccccCCcC-cC-CCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccC-chhhcccccccE
Q 017094          121 QFLRVLNLRESALEVCPRK-MG-NLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEEL-PKDIRYLVILRV  196 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~~-~~-~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~  196 (377)
                      ..++.|+|++|.+..++.. +. .+++|++|++++| .+..++ ..+..+++|++|++++|. +..+ +..+..+++|+.
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCE
Confidence            3466777777776655433 43 6677777777655 344443 346666777777777653 3333 334566677777


Q ss_pred             eeecCcccccC-cccCCCCCCCCEEEccCCCCchhhHHh-c---ccCcccchhccccCC
Q 017094          197 FALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDLEHLFEE-I---EQLSLLRTLLIHSYD  250 (377)
Q Consensus       197 L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-l---~~l~~L~~L~l~~~~  250 (377)
                      |++++|.+... +..+..+++|+.|++++|.... ++.. +   ..+++|+.|++++|.
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSC
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCC
Confidence            77777666643 3456666677777776665332 2222 2   345555555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=2e-13  Score=116.45  Aligned_cols=149  Identities=19%  Similarity=0.199  Sum_probs=92.7

Q ss_pred             ceEeccCCCcccccChhhcCCCcccEEeccCccccccC-c-hhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEcc
Q 017094          147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEEL-P-KDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTIS  223 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-p-~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~  223 (377)
                      +.++++++ .++.+|..+  .+.+++|++++|. +..+ | ..+..+++|+.|++++|.++..+ ..+..+++|++|+++
T Consensus        14 ~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSS-CCSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCC-CcccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            57788754 566777654  3456788888864 4444 3 23677888888888888777654 367778888888888


Q ss_pred             CCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094          224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSL  303 (377)
Q Consensus       224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  303 (377)
                      +|......+..+..+++|+.|++++|....                  -.|..+  ..+++|++|++++|......|..+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITC------------------VGNDSF--IGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCC------------------BCTTSS--TTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCe------------------ECHhHc--CCCccCCEEECCCCcCCEECHHHh
Confidence            776544444446666666666666654322                  112223  455666666666655443345566


Q ss_pred             CCCccCceecccCccc
Q 017094          304 KDLEALETLAIRGCPK  319 (377)
Q Consensus       304 ~~l~~L~~L~l~~~~~  319 (377)
                      ..+++|++|++++|+.
T Consensus       150 ~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          150 DTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TTCTTCCEEECCSCCE
T ss_pred             cCCCCCCEEEecCcCC
Confidence            6666666666666643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.48  E-value=3.1e-13  Score=115.97  Aligned_cols=128  Identities=22%  Similarity=0.271  Sum_probs=55.4

Q ss_pred             CcccEEEeCCCccccC-CcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEe
Q 017094          121 QFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L  197 (377)
                      ++|++|++++|.+..+ |..+..+++|++|++++| .+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence            3445555555554433 333444455555555543 2333332 2344455555555544 2223322 23444455555


Q ss_pred             eecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094          198 ALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       198 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      ++++|.+...+..+..+++|+.|++++|+.....+..+..+++|+.|++++|+
T Consensus       118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            55555444444444444445555544443322111223344444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=1.4e-15  Score=147.66  Aligned_cols=103  Identities=20%  Similarity=0.246  Sum_probs=76.0

Q ss_pred             ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccC
Q 017094          145 HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISG  224 (377)
Q Consensus       145 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~  224 (377)
                      .|+.|++++| .+..+|. ++.+++|++|++++| .+..+|..++.+++|+.|++++|.++..| .++.+++|+.|++++
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            4777888765 5666776 777888888888876 45577777888888888888888777765 777788888888887


Q ss_pred             CCCchhh-HHhcccCcccchhccccCCC
Q 017094          225 CRDLEHL-FEEIEQLSLLRTLLIHSYDD  251 (377)
Q Consensus       225 ~~~~~~~-~~~l~~l~~L~~L~l~~~~~  251 (377)
                      |...... |..++.+++|+.|++++|..
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            7654443 67777777788877777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.47  E-value=1.6e-13  Score=117.69  Aligned_cols=130  Identities=23%  Similarity=0.269  Sum_probs=107.5

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCccc
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQ  171 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~  171 (377)
                      ++|+.|++++|.+..   ..+..+..+++|++|+|++|.+..+|. .+..+++|++|++++| .+..++. .+..+++|+
T Consensus        40 ~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~  115 (229)
T 3e6j_A           40 TNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLK  115 (229)
T ss_dssp             TTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhC
Confidence            889999999987642   334567889999999999999988875 4688999999999976 5566654 467899999


Q ss_pred             EEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCc
Q 017094          172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  228 (377)
                      +|++++| .+..+|..+..+++|+.|++++|.+...+ ..+..+++|+.|++.+|...
T Consensus       116 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          116 ELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             EEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             eEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            9999987 56788999999999999999999998765 45788999999999998743

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=7.4e-14  Score=113.82  Aligned_cols=132  Identities=19%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094           92 YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ  171 (377)
Q Consensus        92 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  171 (377)
                      ..++|++|++++|...  ...++..+..+++|++|++++|.+..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~--~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCB--TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCC--hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            3466777777776542  122333456777788888888777766 6777788888888887643333666666688888


Q ss_pred             EEeccCccccccCc--hhhcccccccEeeecCcccccCcc----cCCCCCCCCEEEccCCCC
Q 017094          172 TLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQES----GIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       172 ~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~~~~~  227 (377)
                      +|++++| .+..+|  ..+..+++|+.|++++|.+...+.    .+..+++|+.|++.+|..
T Consensus        99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            8888876 455554  567778888888888888776654    677788888888877753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.46  E-value=1.4e-13  Score=126.49  Aligned_cols=173  Identities=18%  Similarity=0.161  Sum_probs=126.0

Q ss_pred             cEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhh-ccCcccEEEeCCCccccCC-cCcCCCCccceE
Q 017094           72 RHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFS-KSQFLRVLNLRESALEVCP-RKMGNLKHMRYL  149 (377)
Q Consensus        72 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L  149 (377)
                      +.+.+.+..+..  +|..+  .+.++.|++++|.+..   .....+. .+++|++|+|++|.+..++ ..+..+++|++|
T Consensus        21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            455555554443  23222  3468899999986642   2223355 7899999999999998776 468899999999


Q ss_pred             eccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccC----CCCCCCCEEEccC
Q 017094          150 DLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGI----RSLGSLRCLTISG  224 (377)
Q Consensus       150 ~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l----~~l~~L~~L~l~~  224 (377)
                      ++++| .+..++ ..+..+++|++|++++|......|..+..+++|+.|++++|.+...+..+    ..+++|+.|++++
T Consensus        94 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           94 DLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             ECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             ECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            99987 455554 46788999999999998554445777899999999999999998876544    5789999999999


Q ss_pred             CCCchhhHHhcccCcc--cchhccccCCCC
Q 017094          225 CRDLEHLFEEIEQLSL--LRTLLIHSYDDR  252 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  252 (377)
                      |.....-+..+..++.  ++.|++.+|+..
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            8765444455667776  478888887753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=1e-13  Score=110.55  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=91.8

Q ss_pred             ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCccc
Q 017094           92 YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQ  171 (377)
Q Consensus        92 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  171 (377)
                      ..++++.|++++|...  ...++..+..+++|++|++++|.+..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCB--TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCC--hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            3467777777776543  123334467778888888888887766 6777888888888887643333777676788888


Q ss_pred             EEeccCccccccCc--hhhcccccccEeeecCcccccCcc----cCCCCCCCCEEEcc
Q 017094          172 TLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQES----GIRSLGSLRCLTIS  223 (377)
Q Consensus       172 ~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~  223 (377)
                      +|++++|. +..+|  ..+..+++|++|++++|.++..+.    .+..+++|+.|+++
T Consensus        92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888874 45443  677888888888888888876654    57778888888775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=7.3e-13  Score=110.40  Aligned_cols=126  Identities=17%  Similarity=0.132  Sum_probs=87.0

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh--hhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK--SICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT  201 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  201 (377)
                      ++++++++.+..+|..+..  +|++|++++| .+..++.  .+..+++|++|++++|......|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5677777777777765543  7777777765 4555544  267777788888877644444466777777788888887


Q ss_pred             cccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCC
Q 017094          202 KQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       202 ~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  252 (377)
                      |.++..+ ..+..+++|+.|++++|+.....+..+..+++|+.|++++|+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            7777554 34677778888888777766555666777777777777777643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=4.1e-13  Score=110.29  Aligned_cols=129  Identities=15%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhhccC-cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhh-cCC
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQ-FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSI-CEL  167 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l  167 (377)
                      +.++++|++|++++|.+...    +. +..+. +|++|++++|.+..+ ..+..+++|++|++++| .+..+|+.+ ..+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i----~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l   87 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI----EN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQAL   87 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC----CC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred             cCCcCCceEEEeeCCCCchh----HH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcC
Confidence            55566777777776654321    12 23333 677777777776665 46666677777777755 444555333 666


Q ss_pred             CcccEEeccCccccccCch--hhcccccccEeeecCcccccCccc----CCCCCCCCEEEccCCC
Q 017094          168 QSLQTLDLEGCLELEELPK--DIRYLVILRVFALTTKQKSLQESG----IRSLGSLRCLTISGCR  226 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~l~~~~  226 (377)
                      ++|++|++++| .+..+|.  .+..+++|+.|++++|.+...+..    +..+++|+.|++++|.
T Consensus        88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            77777777765 3455554  566666666777766666655432    5556666666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=4.9e-13  Score=109.83  Aligned_cols=132  Identities=22%  Similarity=0.204  Sum_probs=106.0

Q ss_pred             hhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhh-ccccccc
Q 017094          117 FSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDI-RYLVILR  195 (377)
Q Consensus       117 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~  195 (377)
                      +..+.+|+.|++++|.+..+|......++|++|++++| .+..+ ..+..+++|++|++++| .+..+|..+ ..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence            55678999999999999888653333459999999986 56666 56889999999999997 456666554 8999999


Q ss_pred             EeeecCcccccCcc--cCCCCCCCCEEEccCCCCchhhHH----hcccCcccchhccccCCCC
Q 017094          196 VFALTTKQKSLQES--GIRSLGSLRCLTISGCRDLEHLFE----EIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       196 ~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~  252 (377)
                      +|++++|.+...+.  .+..+++|+.|++++|... .++.    .+..+++|+.|+++.+...
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999987665  7889999999999998754 3443    3788999999999988653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=6.5e-14  Score=140.00  Aligned_cols=192  Identities=19%  Similarity=0.135  Sum_probs=109.4

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEE-----eCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCC
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLN-----LRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ  168 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~-----L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~  168 (377)
                      +.++.|.+.++....    .+..+.....|..+.     +..+.+...+..+..+++|+.|++++| .+..+|..+..++
T Consensus       173 ~~~~~l~L~~n~~~~----~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDE----ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYD  247 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCC
T ss_pred             CccceEEeeCCCCCc----chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCC
Confidence            567788887654322    122222222333333     333344445677889999999999976 5678888888999


Q ss_pred             cccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhcccc
Q 017094          169 SLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHS  248 (377)
Q Consensus       169 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  248 (377)
                      +|++|+|++| .+..+|..+..+++|+.|++++|.++.+|..++.+++|+.|++++|.. ..+|..++.+++|+.|++++
T Consensus       248 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          248 FLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             SCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTT
T ss_pred             CCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCC
Confidence            9999999997 556899999999999999999999998888899999999999999865 57787888999999999988


Q ss_pred             CCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCc
Q 017094          249 YDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGC  317 (377)
Q Consensus       249 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  317 (377)
                      |....                  .+|..+.... ..+..+++++|.....+|.      .|+.|+++.|
T Consensus       326 N~l~~------------------~~p~~~~~~~-~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          326 NPLEK------------------QFLKILTEKS-VTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             SCCCS------------------HHHHHHHHHH-HHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CccCC------------------CChHHHhhcc-hhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            87543                  3444431111 1123356777765555554      4556666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=3.8e-12  Score=106.06  Aligned_cols=125  Identities=20%  Similarity=0.204  Sum_probs=71.3

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ  203 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  203 (377)
                      ++++++++.+..+|..+.  ++|++|++++| .+..+|..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            455666666666655432  46666666654 455566666666666666666653222223446666666666666666


Q ss_pred             cccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094          204 KSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD  251 (377)
Q Consensus       204 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  251 (377)
                      ++..+ ..+..+++|+.|++++|......+..+..+++|+.|++++|+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            66543 3456666666666666654332223355566666666666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=1.5e-14  Score=121.35  Aligned_cols=128  Identities=23%  Similarity=0.294  Sum_probs=100.9

Q ss_pred             HHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhccccc
Q 017094          114 ESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVI  193 (377)
Q Consensus       114 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~  193 (377)
                      +..+..+++|++|++++|.+..+| .+..+++|++|++++| .+..+|..+..+++|++|++++| .+..+| .+..+++
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~  116 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN  116 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH
T ss_pred             hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC
Confidence            346778889999999999888887 8888899999999876 56678887777889999999987 555566 6888899


Q ss_pred             ccEeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhhHH----------hcccCcccchhc
Q 017094          194 LRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHLFE----------EIEQLSLLRTLL  245 (377)
Q Consensus       194 L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L~  245 (377)
                      |++|++++|.+...+  ..+..+++|+.|++++|......+.          .+..+++|+.|+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            999999999888654  3688899999999998875443332          266778888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=9.2e-12  Score=112.83  Aligned_cols=80  Identities=13%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCc-eecccCcccCCCCC-cCCCCCCC
Q 017094          256 RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALE-TLAIRGCPKLSSLP-EDMHHLTT  332 (377)
Q Consensus       256 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~-~L~l~~~~~~~~~~-~~l~~l~~  332 (377)
                      +++|++++|.++ .+..++...+ ..+++|+.+++.++  +..++. .|.++++|+ .+++.+  .++.++ ..+.+|++
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence            456777777654 3556666554 56777888888764  444443 466777887 887776  344443 55677788


Q ss_pred             cCeeeccCC
Q 017094          333 LKLLAIGGC  341 (377)
Q Consensus       333 L~~L~l~~c  341 (377)
                      |+.|++.++
T Consensus       299 L~~l~l~~n  307 (329)
T 3sb4_A          299 LRYVLATGD  307 (329)
T ss_dssp             EEEEEECSS
T ss_pred             CCEEEeCCC
Confidence            888877543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.28  E-value=6.7e-12  Score=104.49  Aligned_cols=126  Identities=21%  Similarity=0.141  Sum_probs=96.3

Q ss_pred             eEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC--cCCCCccceEeccCCCcccccChhhcCCCcccEEe
Q 017094           97 RTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK--MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLD  174 (377)
Q Consensus        97 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  174 (377)
                      ++++++++.+...    +..+  ..+|++|++++|.+..++..  +..+++|++|++++|......|..+..+++|++|+
T Consensus        11 ~~l~~s~~~l~~i----p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLKEI----PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCSSC----CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCcCcC----ccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            5677777654321    1111  23889999999999877653  88899999999998754444477888999999999


Q ss_pred             ccCccccccCchhhcccccccEeeecCcccccC-cccCCCCCCCCEEEccCCCCc
Q 017094          175 LEGCLELEELPKDIRYLVILRVFALTTKQKSLQ-ESGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       175 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~  228 (377)
                      +++|......+..+..+++|++|++++|.++.. +..+..+++|+.|++++|...
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999854444455688899999999999998854 567888999999999998754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=3.3e-11  Score=100.35  Aligned_cols=106  Identities=25%  Similarity=0.321  Sum_probs=87.2

Q ss_pred             CcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094          121 QFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL  199 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  199 (377)
                      ++|++|++++|.+..+|..+..+++|++|++++| .+..++ ..+..+++|++|++++|......|..+..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            5789999999999988888999999999999976 455444 56888999999999987543334456889999999999


Q ss_pred             cCcccccCcc-cCCCCCCCCEEEccCCCC
Q 017094          200 TTKQKSLQES-GIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       200 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~  227 (377)
                      ++|.++..+. .+..+++|+.|++.+|..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            9999987764 578899999999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.25  E-value=3.8e-11  Score=98.47  Aligned_cols=104  Identities=28%  Similarity=0.353  Sum_probs=50.9

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEe
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L  197 (377)
                      ++|+.|++++|.+..++. .+..+++|++|++++| .+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence            355555555555554433 2345555555555544 3333332 2345555555555554 2333332 24455555555


Q ss_pred             eecCcccccCccc-CCCCCCCCEEEccCCC
Q 017094          198 ALTTKQKSLQESG-IRSLGSLRCLTISGCR  226 (377)
Q Consensus       198 ~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~  226 (377)
                      ++++|.++..+.. +..+++|+.|++++|.
T Consensus       106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            5555555544332 3445555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=4e-13  Score=112.54  Aligned_cols=146  Identities=17%  Similarity=0.190  Sum_probs=116.3

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR  147 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~  147 (377)
                      .-.++...+.+....-..++..+..+++|++|++++|....    ++ .+..+++|++|++++|.+..+|..+..+++|+
T Consensus        22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~   96 (198)
T 1ds9_A           22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE   96 (198)
T ss_dssp             CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred             CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence            34666666665533333445588999999999999986543    23 67889999999999999999998888889999


Q ss_pred             eEeccCCCcccccChhhcCCCcccEEeccCccccccCch--hhcccccccEeeecCcccccCccc-----------CCCC
Q 017094          148 YLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPK--DIRYLVILRVFALTTKQKSLQESG-----------IRSL  214 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~-----------l~~l  214 (377)
                      +|++++| .+..+| .+..+++|++|++++| .+..++.  .+..+++|++|++++|.+...++.           +..+
T Consensus        97 ~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A           97 ELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             EEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             EEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence            9999986 666676 5889999999999987 4555543  688999999999999988754322           6789


Q ss_pred             CCCCEEE
Q 017094          215 GSLRCLT  221 (377)
Q Consensus       215 ~~L~~L~  221 (377)
                      ++|+.|+
T Consensus       174 ~~L~~Ld  180 (198)
T 1ds9_A          174 PNLKKLD  180 (198)
T ss_dssp             SSCSEEC
T ss_pred             CCcEEEC
Confidence            9999997

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=4.4e-10  Score=92.08  Aligned_cols=125  Identities=18%  Similarity=0.247  Sum_probs=96.0

Q ss_pred             ccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCch-hhcccccccEeeec
Q 017094          123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELPK-DIRYLVILRVFALT  200 (377)
Q Consensus       123 L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~  200 (377)
                      .+.++++++.+..+|..+.  ++|++|++++|. +..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECC
Confidence            4678888888888875543  789999999764 555554 4678899999999987 4555554 46889999999999


Q ss_pred             CcccccCcc-cCCCCCCCCEEEccCCCCchhhHH-hcccCcccchhccccCCCC
Q 017094          201 TKQKSLQES-GIRSLGSLRCLTISGCRDLEHLFE-EIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       201 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~  252 (377)
                      +|.++..+. .+..+++|+.|++++|... .++. .+..+++|+.|++++|+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence            998887654 4678999999999988754 3443 4577889999999988754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.12  E-value=1.1e-10  Score=105.59  Aligned_cols=101  Identities=20%  Similarity=0.152  Sum_probs=72.6

Q ss_pred             CCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCcc-EEeecC
Q 017094          214 LGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLH-TLVIGD  292 (377)
Q Consensus       214 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~-~L~l~~  292 (377)
                      +++|+.+++.+|+...--..++..|++|+.+.+.++                    +..++...+ ..+++|+ .+.+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--------------------i~~I~~~aF-~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--------------------LKTIGQRVF-SNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--------------------CCEECTTTT-TTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--------------------cceehHHHh-hCChhccEEEEEcc
Confidence            789999999987643322345778888888888664                    235555444 6778898 999987


Q ss_pred             CCCCCCC-CccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeeec
Q 017094          293 CPNFMAL-PGSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAI  338 (377)
Q Consensus       293 ~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  338 (377)
                        .+..+ +..|.++++|+.+++..+ .++.++ ..+.++++|+.|+.
T Consensus       284 --~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          284 --SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             --TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred             --cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence              34455 456889999999999876 455554 46788889988864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=4.5e-10  Score=91.42  Aligned_cols=102  Identities=24%  Similarity=0.247  Sum_probs=81.5

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchh-hcccccccEeee
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFAL  199 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l  199 (377)
                      ..+.++++++.+..+|..+.  ++|++|++++| .+..+ |..+..+++|++|++++| .+..+|.. +..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence            35788999999988887664  88999999976 45544 667888999999999987 45566554 588999999999


Q ss_pred             cCcccccCcc-cCCCCCCCCEEEccCCCC
Q 017094          200 TTKQKSLQES-GIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       200 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~  227 (377)
                      ++|.++..+. .+..+++|+.|++++|..
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            9999887764 478889999999988864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.10  E-value=4.8e-10  Score=91.58  Aligned_cols=100  Identities=23%  Similarity=0.270  Sum_probs=78.9

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchh-hcccccccEeeecC
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRVFALTT  201 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~  201 (377)
                      +.++++++.+..+|..+.  ++|++|++++|. +..+ |..+..+++|++|++++| .+..+|.. +..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            678888888888887664  788999998764 4444 667888899999999887 56666654 57888999999999


Q ss_pred             cccccCccc-CCCCCCCCEEEccCCCC
Q 017094          202 KQKSLQESG-IRSLGSLRCLTISGCRD  227 (377)
Q Consensus       202 ~~~~~~~~~-l~~l~~L~~L~l~~~~~  227 (377)
                      |.+...+.. +..+++|+.|++++|..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCc
Confidence            888877654 78888899999888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.04  E-value=2.6e-09  Score=99.06  Aligned_cols=149  Identities=14%  Similarity=0.184  Sum_probs=92.3

Q ss_pred             hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCC
Q 017094           89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICEL  167 (377)
Q Consensus        89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l  167 (377)
                      +|.++ +|+.+.+..+ ..   ..-..+|..+ +|+.+.+.. .+..++ .++..|++|+.+++..+ .+..++.....+
T Consensus       131 aF~~~-~L~~i~l~~~-i~---~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~  202 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LK---SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVY  202 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CC---EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTT
T ss_pred             hcccC-CccEEEeCCC-cc---EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEee
Confidence            56665 6888887654 11   1112234443 588888876 455443 56778888888888754 566666655556


Q ss_pred             CcccEEeccCccccccC-chhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhh-HHhcccCcccchhc
Q 017094          168 QSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHL-FEEIEQLSLLRTLL  245 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~  245 (377)
                      .+|+.+.+..+  +..+ ...+.++++|+.+.+..+-.......+.. .+|+.+.+..+  +..+ ..++..|++|+.+.
T Consensus       203 ~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          203 AGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEE
Confidence            78888888643  4444 34567788888888876532222234444 67888887542  2223 34566777888887


Q ss_pred             cccCC
Q 017094          246 IHSYD  250 (377)
Q Consensus       246 l~~~~  250 (377)
                      +.++.
T Consensus       278 l~~~~  282 (401)
T 4fdw_A          278 TYGST  282 (401)
T ss_dssp             EESSC
T ss_pred             eCCcc
Confidence            76654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.98  E-value=2.3e-10  Score=105.18  Aligned_cols=160  Identities=15%  Similarity=0.062  Sum_probs=87.7

Q ss_pred             cCCceEEEeecCCchhh-HHHHHHHhh-ccCcccEEEeCCCcccc--CCcCcCCCCccceEeccCCCcccccCh----hh
Q 017094           93 LGRLRTIFFSTDDEKTS-QSFVESCFS-KSQFLRVLNLRESALEV--CPRKMGNLKHMRYLDLSRNSKIKKLPK----SI  164 (377)
Q Consensus        93 ~~~L~~L~l~~~~~~~~-~~~~~~~~~-~~~~L~~L~L~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~l~~----~~  164 (377)
                      +++|+.|++++|.+... ...+...+. ...+|++|+|++|.+..  .......+++|++|++++|........    .+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45677777777655421 122222233 22577777777776642  222223455677777776532221111    12


Q ss_pred             -cCCCcccEEeccCccccc----cCchhhcccccccEeeecCcccccC-----cccCCCCCCCCEEEccCCCCchh----
Q 017094          165 -CELQSLQTLDLEGCLELE----ELPKDIRYLVILRVFALTTKQKSLQ-----ESGIRSLGSLRCLTISGCRDLEH----  230 (377)
Q Consensus       165 -~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~----  230 (377)
                       ...++|++|++++|....    .++..+..+++|++|++++|.+...     ...+..+++|++|++++|.....    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             234667777777763221    2344456667777777777766532     23445566777777777765432    


Q ss_pred             hHHhcccCcccchhccccCCCC
Q 017094          231 LFEEIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       231 ~~~~l~~l~~L~~L~l~~~~~~  252 (377)
                      +...+..+++|++|++++|...
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            3334445667777777776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.91  E-value=2.8e-09  Score=86.67  Aligned_cols=105  Identities=17%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             ccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCccc-CCCCCCCCEEEcc
Q 017094          145 HMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESG-IRSLGSLRCLTIS  223 (377)
Q Consensus       145 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~  223 (377)
                      ..+.++++++ .+..+|..+  .++|++|++++|......|..+..+++|++|++++|.++..+.. +..+++|+.|+++
T Consensus        10 ~~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999965 778888765  48999999999844444477789999999999999999987654 6899999999999


Q ss_pred             CCCCchhhHHhcccCcccchhccccCCCC
Q 017094          224 GCRDLEHLFEEIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       224 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  252 (377)
                      +|+.....+..+..+++|+.|++++|+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            98765444445888999999999998754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.91  E-value=3e-09  Score=86.85  Aligned_cols=104  Identities=14%  Similarity=0.106  Sum_probs=84.4

Q ss_pred             cceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCccc-CCCCCCCCEEEccC
Q 017094          146 MRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESG-IRSLGSLRCLTISG  224 (377)
Q Consensus       146 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~  224 (377)
                      -+.++++++ .+..+|..+.  ++|++|++++|......|..+..+++|++|++++|.++..+.. +..+++|+.|++++
T Consensus        14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            378899864 6788887664  8999999999854444477889999999999999999988654 58999999999999


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  252 (377)
                      |+.....+..+..+++|+.|++++|+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            8765433334888999999999998754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.90  E-value=5.8e-10  Score=102.48  Aligned_cols=167  Identities=14%  Similarity=0.038  Sum_probs=118.1

Q ss_pred             CCCcEEEEEeccccccc---hhhhhc-ccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-----CcC
Q 017094           69 KRVRHLSFAAANALRND---FSSLLS-YLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-----PRK  139 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~~---~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-----~~~  139 (377)
                      +.++.|++.++.+....   +...+. ..++|++|++++|.+.  ..........+++|+.|+|++|.+...     ...
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            47889999988876533   222232 2379999999998754  344444455667899999999988632     222


Q ss_pred             c-CCCCccceEeccCCCccc----ccChhhcCCCcccEEeccCccccc----cCchhhcccccccEeeecCcccccCc--
Q 017094          140 M-GNLKHMRYLDLSRNSKIK----KLPKSICELQSLQTLDLEGCLELE----ELPKDIRYLVILRVFALTTKQKSLQE--  208 (377)
Q Consensus       140 ~-~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~--  208 (377)
                      + ...++|++|++++|....    .++..+..+++|++|++++|....    .++..+..+++|+.|++++|.++...  
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            2 346789999999874322    355566788999999999985322    23556778889999999999887431  


Q ss_pred             ---ccCCCCCCCCEEEccCCCCchhhHHhccc
Q 017094          209 ---SGIRSLGSLRCLTISGCRDLEHLFEEIEQ  237 (377)
Q Consensus       209 ---~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  237 (377)
                         ..+...++|++|++++|.........+..
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence               34556789999999999876655444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.86  E-value=1.6e-07  Score=87.00  Aligned_cols=233  Identities=15%  Similarity=0.157  Sum_probs=137.1

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccC-hhhcCC
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLP-KSICEL  167 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l  167 (377)
                      +..+..++.+.+...-.    ..-..+|..+ +|+.+.+..+ +..++ .++.++ +|+.+.+..  .+..++ .+|..|
T Consensus       109 ~~~~~~l~~i~ip~~i~----~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c  179 (401)
T 4fdw_A          109 TEILKGYNEIILPNSVK----SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYC  179 (401)
T ss_dssp             EEECSSCSEEECCTTCC----EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTC
T ss_pred             EEecCCccEEEECCccC----EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCc
Confidence            34456777777664311    1112335554 6888887765 44443 345554 588888873  455444 467778


Q ss_pred             CcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhH-HhcccCcccchhcc
Q 017094          168 QSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLF-EEIEQLSLLRTLLI  246 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  246 (377)
                      ++|+.+++.++ .+..++.....+.+|+.+.+..+-.......+..+++|+.+.+..+  +..+. .++.. .+|+.+.+
T Consensus       180 ~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          180 YNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             TTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred             ccCCeeecCCC-cceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe
Confidence            88888888765 5666665554567888888876533333456777888888888653  22222 22333 56777766


Q ss_pred             ccCCC-Cc----cCCCccceEEeccccc----ccccchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCCccCceecccC
Q 017094          247 HSYDD-RK----NTRPRLRRVFIKEITQ----LLELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLEALETLAIRG  316 (377)
Q Consensus       247 ~~~~~-~~----~~~~~L~~L~l~~~~~----~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~  316 (377)
                      ..+-. ..    ..+++|+.+.+.+...    ...++...+ ..|++|+.+.+.+  .+..++ ..|.++.+|+.+.|..
T Consensus       256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT
T ss_pred             CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc
Confidence            43210 00    3355777777765321    123444433 5667788887774  244443 3466778888888854


Q ss_pred             cccCCCCC-cCCCCCCCcCeeeccCC
Q 017094          317 CPKLSSLP-EDMHHLTTLKLLAIGGC  341 (377)
Q Consensus       317 ~~~~~~~~-~~l~~l~~L~~L~l~~c  341 (377)
                      +  ++.++ ..+..+ +|+.+++.++
T Consensus       333 ~--l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          333 N--VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             T--CCEECTTSSSSS-CCCEEEECCS
T ss_pred             c--ccEEcHHhCCCC-CCCEEEEcCC
Confidence            3  44443 445666 8888888776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=1.4e-08  Score=92.37  Aligned_cols=102  Identities=16%  Similarity=0.107  Sum_probs=75.5

Q ss_pred             EEEeCCC-ccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEeeecCc
Q 017094          125 VLNLRES-ALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTK  202 (377)
Q Consensus       125 ~L~L~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  202 (377)
                      .++.+++ .+..+|. +..+++|++|+|++++.+..+| ..+..+++|++|+|++|......|..+.++++|++|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4577776 7888888 8888888888888523566555 56778888888888887544444556788888888888888


Q ss_pred             ccccCcccCCCCCCCCEEEccCCCC
Q 017094          203 QKSLQESGIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       203 ~~~~~~~~l~~l~~L~~L~l~~~~~  227 (377)
                      .+...+..+.....|+.|++.+|..
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCc
Confidence            8887765544444488888888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=1.6e-08  Score=92.26  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=51.1

Q ss_pred             CCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhc--ccccccEeeecCc--c------cccCccc
Q 017094          141 GNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIR--YLVILRVFALTTK--Q------KSLQESG  210 (377)
Q Consensus       141 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~--~l~~L~~L~l~~~--~------~~~~~~~  210 (377)
                      ..+++|+.|++++|... .++. + .+++|++|++..|.........+.  .+++|++|+++.+  .      .......
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            44455555555543211 2222 2 255566666654432111111222  4566666665421  1      1011111


Q ss_pred             C--CCCCCCCEEEccCCCCchhhHHhc---ccCcccchhccccCC
Q 017094          211 I--RSLGSLRCLTISGCRDLEHLFEEI---EQLSLLRTLLIHSYD  250 (377)
Q Consensus       211 l--~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~  250 (377)
                      +  ..+++|+.|++.+|......+..+   ..+++|++|+++.|.
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            2  347788888888777654433333   246677777776554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=1.1e-08  Score=93.20  Aligned_cols=182  Identities=10%  Similarity=0.114  Sum_probs=115.5

Q ss_pred             CCCcEEEEEecccc--c-----cchhhhhcccCCceEEEeecCCchh-----h-HHHHHHHhhccCcccEEEeCCCcccc
Q 017094           69 KRVRHLSFAAANAL--R-----NDFSSLLSYLGRLRTIFFSTDDEKT-----S-QSFVESCFSKSQFLRVLNLRESALEV  135 (377)
Q Consensus        69 ~~l~~L~l~~~~~~--~-----~~~~~~~~~~~~L~~L~l~~~~~~~-----~-~~~~~~~~~~~~~L~~L~L~~~~~~~  135 (377)
                      ..++.|.+......  .     ..+..+...+++|+.|.+.+.....     . ...+...+..+++|+.|+|+++.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            46778877754332  1     1123446678999999987642210     0 11345667889999999999874334


Q ss_pred             CCcCcCCCCccceEeccCCCcccccChhhc--CCCcccEEeccCccc-------cccCchhh--cccccccEeeecCccc
Q 017094          136 CPRKMGNLKHMRYLDLSRNSKIKKLPKSIC--ELQSLQTLDLEGCLE-------LEELPKDI--RYLVILRVFALTTKQK  204 (377)
Q Consensus       136 l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~--~l~~L~~L~l~~~~~-------~~~~p~~l--~~l~~L~~L~l~~~~~  204 (377)
                      ++. + .+++|+.|++..|.........+.  .+++|++|+|+.+..       +..+...+  ..+++|++|++.+|.+
T Consensus       187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            544 3 388999999986642222222333  789999999863211       22222223  3589999999999887


Q ss_pred             ccCc----ccCCCCCCCCEEEccCCCCchh----hHHhcccCcccchhccccCCCC
Q 017094          205 SLQE----SGIRSLGSLRCLTISGCRDLEH----LFEEIEQLSLLRTLLIHSYDDR  252 (377)
Q Consensus       205 ~~~~----~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~  252 (377)
                      ....    .....+++|++|+++.|.....    ++..+..+++|+.|+++.|...
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            6321    1224688999999998876553    3333456678888888776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.50  E-value=1.6e-07  Score=85.34  Aligned_cols=87  Identities=18%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             hhccCcccEEEeCC-CccccCC-cCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchhhccccc
Q 017094          117 FSKSQFLRVLNLRE-SALEVCP-RKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKDIRYLVI  193 (377)
Q Consensus       117 ~~~~~~L~~L~L~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~  193 (377)
                      +..+.+|+.|+|++ |.+..++ ..+..+++|++|+|++| .+..+ |..|..+++|++|+|++| .+..+|..+.....
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~  104 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS  104 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC
Confidence            44445555555553 5555443 34555555555555544 23322 234455555555555554 33344333222222


Q ss_pred             ccEeeecCcccc
Q 017094          194 LRVFALTTKQKS  205 (377)
Q Consensus       194 L~~L~l~~~~~~  205 (377)
                      |+.|++.+|.+.
T Consensus       105 L~~l~l~~N~~~  116 (347)
T 2ifg_A          105 LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ceEEEeeCCCcc
Confidence            555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.49  E-value=1.9e-06  Score=79.65  Aligned_cols=129  Identities=13%  Similarity=0.156  Sum_probs=72.6

Q ss_pred             hhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCccceEeccCCCccccc-----
Q 017094           87 SSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHMRYLDLSRNSKIKKL-----  160 (377)
Q Consensus        87 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l-----  160 (377)
                      ..+|.+|.+|+++.+..+ .   ...-..+|..|.+|+.+++..+ +..+ ..++..+.+|+.+.+..  .+..+     
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF  136 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGVEAF  136 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred             HHHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecceee
Confidence            347888899999988643 2   1122346888889999988654 3333 23566667776666542  11111     


Q ss_pred             ------------------ChhhcCCCcccEEeccCccccccC-chhhcccccccEeeecCcccccCcccCCCCCCCCEEE
Q 017094          161 ------------------PKSICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLT  221 (377)
Q Consensus       161 ------------------~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~  221 (377)
                                        ..+|..+++|+.+.+..+  +..+ ...+.++.+|+.+.+..+-.......+..+..|+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCC
T ss_pred             ecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeCchhhccccccceee
Confidence                              123555666666666542  2222 2345566667766666543222234555566666555


Q ss_pred             ccC
Q 017094          222 ISG  224 (377)
Q Consensus       222 l~~  224 (377)
                      +..
T Consensus       215 ~~~  217 (394)
T 4fs7_A          215 FPN  217 (394)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.44  E-value=1.8e-06  Score=79.96  Aligned_cols=80  Identities=20%  Similarity=0.363  Sum_probs=49.6

Q ss_pred             CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCCccCceecccCcccCCCCC-cCCCCCCCc
Q 017094          256 RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTL  333 (377)
Q Consensus       256 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L  333 (377)
                      +..|+.+.+.  ..+..++...+ ..|.+|+.+.+..+  +..+. .+|.++.+|+.+.+-.  .++.+. ..+.+|++|
T Consensus       287 c~~L~~i~l~--~~i~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          287 CPALQDIEFS--SRITELPESVF-AGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL  359 (394)
T ss_dssp             CTTCCEEECC--TTCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred             ccccccccCC--CcccccCceee-cCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence            4456666664  24455655544 56677888887642  33443 3466788888888854  245554 346778888


Q ss_pred             CeeeccCCC
Q 017094          334 KLLAIGGCP  342 (377)
Q Consensus       334 ~~L~l~~c~  342 (377)
                      +.+++.+..
T Consensus       360 ~~i~~~~~~  368 (394)
T 4gt6_A          360 NNIEYSGSR  368 (394)
T ss_dssp             CEEEESSCH
T ss_pred             CEEEECCce
Confidence            888877653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=2.9e-07  Score=75.69  Aligned_cols=68  Identities=4%  Similarity=0.085  Sum_probs=33.3

Q ss_pred             hhhhcccCCceEEEeecC-Cchh-hHHHHHHHhhccCcccEEEeCCCcccc-----CCcCcCCCCccceEeccCC
Q 017094           87 SSLLSYLGRLRTIFFSTD-DEKT-SQSFVESCFSKSQFLRVLNLRESALEV-----CPRKMGNLKHMRYLDLSRN  154 (377)
Q Consensus        87 ~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~l~~L~~L~l~~~  154 (377)
                      ...+...+.|++|++++| .++. ....+...+...++|++|+|++|.+..     +...+...++|++|++++|
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            344555666666666665 4431 222333445555566666666665531     2222333344555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.37  E-value=1.9e-06  Score=79.74  Aligned_cols=214  Identities=13%  Similarity=0.087  Sum_probs=127.4

Q ss_pred             HHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhccccc
Q 017094          115 SCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVI  193 (377)
Q Consensus       115 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~  193 (377)
                      .+|..+.+|+.+.+.++...--...+..+.+|+.+.+..+  +..++ .++..+..|+.+.+..+  ...+.........
T Consensus       156 ~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~  231 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTG  231 (394)
T ss_dssp             TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCC
T ss_pred             hhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCC
Confidence            3577888888888876543322346777888888888642  44433 35666777777776543  2223333344556


Q ss_pred             ccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc---cCCCccceEEecccccc
Q 017094          194 LRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQL  270 (377)
Q Consensus       194 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~  270 (377)
                      |+.+.+..+........+..+..|+.+.+..+.. .-....+..+..++...........   ..+.+|+.+.+.+  .+
T Consensus       232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~--~i  308 (394)
T 4fs7_A          232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD--SV  308 (394)
T ss_dssp             CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT--TC
T ss_pred             CceEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecccccccccccccccccc--cc
Confidence            7777666543333334566677777777655321 1111233445555555443332221   2345677776653  35


Q ss_pred             cccchhhhhcCCCCccEEeecCCCCCCCCC-ccCCCCccCceecccCcccCCCCC-cCCCCCCCcCeeeccC
Q 017094          271 LELPQWLLQCCTDTLHTLVIGDCPNFMALP-GSLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAIGG  340 (377)
Q Consensus       271 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~  340 (377)
                      ..++...+ ..+.+|+.+++.++  +..++ .+|.++.+|+.+.+..+  ++.++ ..+.+|++|+.+++..
T Consensus       309 ~~I~~~aF-~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          309 KFIGEEAF-ESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ceechhhh-cCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            55655544 56788999988642  44443 45778899999988654  45444 4567888999988854

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=2.8e-07  Score=74.32  Aligned_cols=88  Identities=13%  Similarity=0.262  Sum_probs=62.1

Q ss_pred             CccceEEeccccccccc-chhhhhcCCCCccEEeecCCCCCCCC-CccCCC----CccCceecccCcccCCCCC-cCCCC
Q 017094          257 PRLRRVFIKEITQLLEL-PQWLLQCCTDTLHTLVIGDCPNFMAL-PGSLKD----LEALETLAIRGCPKLSSLP-EDMHH  329 (377)
Q Consensus       257 ~~L~~L~l~~~~~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~----l~~L~~L~l~~~~~~~~~~-~~l~~  329 (377)
                      ..|++|++++|. +++. -..+  ..+++|++|++++|..++.- -..+..    .++|++|+|++|..+++-. ..+..
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGG--TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             ceEeEEeCcCCC-ccHHHHHHh--cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            356777777765 3332 2233  67899999999999865532 112333    3579999999998887421 23567


Q ss_pred             CCCcCeeeccCCCCcccc
Q 017094          330 LTTLKLLAIGGCPALSER  347 (377)
Q Consensus       330 l~~L~~L~l~~c~~l~~~  347 (377)
                      +++|+.|++++|+.+++.
T Consensus       138 ~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CTTCCEEEEESCTTCCCH
T ss_pred             CCCCCEEECCCCCCCCch
Confidence            899999999999999985

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=6.9e-07  Score=73.42  Aligned_cols=118  Identities=9%  Similarity=0.094  Sum_probs=73.6

Q ss_pred             hHHHHHHHhhccCcccEEEeCCC-ccc-----cCCcCcCCCCccceEeccCCCccc----ccChhhcCCCcccEEeccCc
Q 017094          109 SQSFVESCFSKSQFLRVLNLRES-ALE-----VCPRKMGNLKHMRYLDLSRNSKIK----KLPKSICELQSLQTLDLEGC  178 (377)
Q Consensus       109 ~~~~~~~~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~  178 (377)
                      ....+...+...+.|+.|+|++| .+.     .+...+...++|++|++++|....    .+...+...++|++|++++|
T Consensus        24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            35566677888999999999998 765     344556667888888888764322    23444555677888888876


Q ss_pred             ccccc----CchhhcccccccEeee--cCcccccC-----cccCCCCCCCCEEEccCCC
Q 017094          179 LELEE----LPKDIRYLVILRVFAL--TTKQKSLQ-----ESGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       179 ~~~~~----~p~~l~~l~~L~~L~l--~~~~~~~~-----~~~l~~l~~L~~L~l~~~~  226 (377)
                      ..-..    +...+...++|++|++  ++|.+...     ...+...++|++|++++|.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            32221    3344555666777777  55655432     1233444566666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=2.3e-06  Score=68.97  Aligned_cols=17  Identities=12%  Similarity=0.344  Sum_probs=9.6

Q ss_pred             CCCCCCCCEEEccCCCC
Q 017094          211 IRSLGSLRCLTISGCRD  227 (377)
Q Consensus       211 l~~l~~L~~L~l~~~~~  227 (377)
                      +..+++|+.|++++|..
T Consensus        81 L~~~~~L~~L~L~~C~~   97 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHY   97 (176)
T ss_dssp             GTTCSCCCEEEEESCTT
T ss_pred             hcCCCCCCEEEeCCCCc
Confidence            44555666666666643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.13  E-value=7.4e-05  Score=68.93  Aligned_cols=76  Identities=13%  Similarity=0.210  Sum_probs=45.3

Q ss_pred             CccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccCCCCC-cCCCCCCCcC
Q 017094          257 PRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKLSSLP-EDMHHLTTLK  334 (377)
Q Consensus       257 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~  334 (377)
                      ..|+.+.+.+  ....+....+ ..+++|+.+.+..  .+..+++ .|.++.+|+.+.|..+  ++.+. ..+..|.+|+
T Consensus       265 ~~L~~i~lp~--~~~~I~~~aF-~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          265 AYLASVKMPD--SVVSIGTGAF-MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             SSCCEEECCT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred             ccccEEeccc--ccceecCccc-ccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCC
Confidence            4455555533  1223333333 4567778777753  2444443 4667888998888643  45443 4467788888


Q ss_pred             eeecc
Q 017094          335 LLAIG  339 (377)
Q Consensus       335 ~L~l~  339 (377)
                      .+.+-
T Consensus       338 ~i~ip  342 (394)
T 4gt6_A          338 RIAIP  342 (394)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88873

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.11  E-value=1.9e-06  Score=74.61  Aligned_cols=80  Identities=19%  Similarity=0.149  Sum_probs=46.8

Q ss_pred             hhccCcccEEEeCCCccccC---CcCcCCCCccceEeccCCCcccccChhhcCCC--cccEEeccCccccccCc------
Q 017094          117 FSKSQFLRVLNLRESALEVC---PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQ--SLQTLDLEGCLELEELP------  185 (377)
Q Consensus       117 ~~~~~~L~~L~L~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~~~~~~p------  185 (377)
                      ...+++|+.|+|++|.+..+   |..+..+++|+.|++++| .+..+. .+..++  +|++|++++|.....+|      
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            35677777777777776643   344556777777777755 444332 233333  67777777765444333      


Q ss_pred             -hhhcccccccEee
Q 017094          186 -KDIRYLVILRVFA  198 (377)
Q Consensus       186 -~~l~~l~~L~~L~  198 (377)
                       ..+..+++|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             2245556666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.82  E-value=0.00068  Score=62.00  Aligned_cols=34  Identities=12%  Similarity=0.235  Sum_probs=14.1

Q ss_pred             CCCCccCceecccCcccCCCCC-cCCCCCCCcCeeec
Q 017094          303 LKDLEALETLAIRGCPKLSSLP-EDMHHLTTLKLLAI  338 (377)
Q Consensus       303 ~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  338 (377)
                      |.++.+|+.+.|..  .++.+. ..+.+|++|+.+.+
T Consensus       306 F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          306 FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            44445555555432  123222 22344444544444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.54  E-value=7.3e-05  Score=64.67  Aligned_cols=81  Identities=16%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             cCCCcccEEeccCccccc--cCchhhcccccccEeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhh-------HH
Q 017094          165 CELQSLQTLDLEGCLELE--ELPKDIRYLVILRVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHL-------FE  233 (377)
Q Consensus       165 ~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~-------~~  233 (377)
                      ..+++|+.|+|++|....  .+|..+..+++|+.|++++|.+....  ..+..+ +|++|++.+|.....+       ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            357788888888764322  34455667888888888888777542  233333 8888888888765422       23


Q ss_pred             hcccCcccchhcc
Q 017094          234 EIEQLSLLRTLLI  246 (377)
Q Consensus       234 ~l~~l~~L~~L~l  246 (377)
                      .+..+++|+.|+=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            4566777777753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.45  E-value=0.0023  Score=58.44  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=47.2

Q ss_pred             CCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCc-cCCCCccCceecccCcccCCCCC-cCCCCCCCc
Q 017094          256 RPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPG-SLKDLEALETLAIRGCPKLSSLP-EDMHHLTTL  333 (377)
Q Consensus       256 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L  333 (377)
                      +..|+.+.+..  .+..+....+ ..+.+|+.+.+...  +..++. .+.++.+|+.+.+.++ .++.++ ..+.+|++|
T Consensus       239 ~~~L~~i~lp~--~v~~I~~~aF-~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          239 MKALDEIAIPK--NVTSIGSFLL-QNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKL  312 (379)
T ss_dssp             CSSCCEEEECT--TCCEECTTTT-TTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTC
T ss_pred             CccceEEEcCC--CccEeCcccc-ceeehhcccccccc--ceecccccccccccccccccccc-ccceehhhhhcCCCCC
Confidence            34566666543  2444444333 55677888887642  344433 4667888888888754 344443 446677888


Q ss_pred             Ceeecc
Q 017094          334 KLLAIG  339 (377)
Q Consensus       334 ~~L~l~  339 (377)
                      +.+.+.
T Consensus       313 ~~i~lp  318 (379)
T 4h09_A          313 SSVTLP  318 (379)
T ss_dssp             CEEECC
T ss_pred             CEEEcC
Confidence            888773

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.10  E-value=0.00016  Score=69.75  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=41.5

Q ss_pred             Ccc--cccccCCCCCCHHHHHHHHHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHHhhc
Q 017094            1 MAH--GLLQSHNKKEDLEDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALLVNS   62 (377)
Q Consensus         1 iae--g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~   62 (377)
                      +||  |||...+.+...+++++ ||++|++++|++....+    ....|+|||++|++++++..
T Consensus       411 ~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~----~~~~~~mHdlv~~~a~~~~~  469 (549)
T 2a5y_B          411 SCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM----PVLTFKIDHIIHMFLKHVVD  469 (549)
T ss_dssp             HHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS----SSCEEECCHHHHHHHHTTSC
T ss_pred             eeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC----CceEEEeChHHHHHHHHHHH
Confidence            467  99988754778899998 99999999999987532    34689999999999987554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.71  E-value=0.0019  Score=52.86  Aligned_cols=68  Identities=12%  Similarity=0.098  Sum_probs=35.2

Q ss_pred             hhhhcccCCceEEEeecC-Cch-hhHHHHHHHhhccCcccEEEeCCCcccc-----CCcCcCCCCccceEeccCC
Q 017094           87 SSLLSYLGRLRTIFFSTD-DEK-TSQSFVESCFSKSQFLRVLNLRESALEV-----CPRKMGNLKHMRYLDLSRN  154 (377)
Q Consensus        87 ~~~~~~~~~L~~L~l~~~-~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~l~~L~~L~l~~~  154 (377)
                      ......-+.|++|+++++ ..+ .....+...+..-..|+.|+|++|.+..     +...+..-+.|+.|+|++|
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            334455566777776653 433 1223344455566666777776666541     1222233345566666544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.02  E-value=0.0094  Score=48.70  Aligned_cols=110  Identities=11%  Similarity=0.078  Sum_probs=76.9

Q ss_pred             CCCcEEEEEec-cccc---cchhhhhcccCCceEEEeecCCch-hhHHHHHHHhhccCcccEEEeCCCccc-----cCCc
Q 017094           69 KRVRHLSFAAA-NALR---NDFSSLLSYLGRLRTIFFSTDDEK-TSQSFVESCFSKSQFLRVLNLRESALE-----VCPR  138 (377)
Q Consensus        69 ~~l~~L~l~~~-~~~~---~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~  138 (377)
                      +.+++|.+..+ .+..   ..+..++..-+.|+.|++++|.++ .....+...+..-+.|+.|+|++|.+.     .+-.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            48899999864 5543   234567778899999999999876 234456667888899999999999986     3344


Q ss_pred             CcCCCCccceEeccCCC--ccc-----ccChhhcCCCcccEEeccCc
Q 017094          139 KMGNLKHMRYLDLSRNS--KIK-----KLPKSICELQSLQTLDLEGC  178 (377)
Q Consensus       139 ~~~~l~~L~~L~l~~~~--~~~-----~l~~~~~~l~~L~~L~l~~~  178 (377)
                      .+..-+.|++|+++++.  .++     .+...+..-+.|+.|+++.+
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            55556678999997432  122     23334455567777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.68  E-value=0.14  Score=38.60  Aligned_cols=52  Identities=21%  Similarity=0.261  Sum_probs=29.6

Q ss_pred             EEEeCCCccc--cCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCcc
Q 017094          125 VLNLRESALE--VCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCL  179 (377)
Q Consensus       125 ~L~L~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~  179 (377)
                      .++-++..++  .+|..+.  ++|++|+|++| .+..+|. .+..+++|++|+|.+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            5556666665  5654432  35667777654 4555544 34556666666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=88.28  E-value=0.41  Score=36.03  Aligned_cols=52  Identities=19%  Similarity=0.164  Sum_probs=35.1

Q ss_pred             EEeccCccccc--cCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCC
Q 017094          172 TLDLEGCLELE--ELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCR  226 (377)
Q Consensus       172 ~L~l~~~~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~  226 (377)
                      .++-++. .+.  .+|..+  .++|+.|++++|.++.++ ..+..+++|+.|+|.+|.
T Consensus        12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            5566653 445  677543  246888888888888765 345667788888887775

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=81.15  E-value=1.3  Score=46.66  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHhCCCCcccccCccCCceeEEEEchhHHHHHHH
Q 017094           16 EDIGMRYLKELLSRSFFQDLTFGMVGMETFYFKMHDLMHDLALL   59 (377)
Q Consensus        16 ~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~d~~~d~~~~   59 (377)
                      ++.++.++++|++++|++... .   +....|+|||++|++++.
T Consensus       408 ~~~~~~~l~~L~~~sl~~~~~-~---~~~~~~~~h~l~~~~~~~  447 (1249)
T 3sfz_A          408 TEEVEDILQEFVNKSLLFCNR-N---GKSFCYYLHDLQVDFLTE  447 (1249)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEE-S---SSSEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccceEEec-C---CCceEEEecHHHHHHHHh
Confidence            577899999999999999653 3   455679999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	377
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELE 182
           L  LN+  + L   P     L+    L  S N  + ++P+     Q+L+ L +E    L 
Sbjct: 286 LEELNVSNNKLIELPALPPRLER---LIASFN-HLAEVPEL---PQNLKQLHVEYN-PLR 337

Query: 183 ELPKDIRYLVILRV 196
           E P     +  LR+
Sbjct: 338 EFPDIPESVEDLRM 351

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 20/255 (7%)

Query: 120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNS-KIKKLPKSICELQSLQTLDLEGC 178
           SQ +       S ++    +  +   ++++DLS +  ++  L   + +   LQ L LEG 
Sbjct: 22  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 179 LELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQ- 237
              + +   +     L    L+      + +    L S   L            E+  Q 
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 238 -------------LSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDT 284
                        LS  R  L  S       R           + +L+   +      + 
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 285 LHTLVIGDCPNFM-ALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA 343
           L  L +  C + +      L ++  L+TL + G     +L      L  L++     C  
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN----CSH 257

Query: 344 LSERCKPPTGEDWPK 358
            +   +P  G    +
Sbjct: 258 FTTIARPTIGNKKNQ 272

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 9/203 (4%)

Query: 144 KHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALT-TK 202
                LDL  N   +        L++L TL L      +  P     LV L    L+  +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 203 QKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLL--RTLLIHSYDDRKNTRPRLR 260
            K L E   ++L  LR       +  + +F  + Q+ ++   T  + S          ++
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 261 RVFIKEI--TQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCP 318
           ++    I  T +  +PQ L      +L  L +           SLK L  L  L +    
Sbjct: 151 KLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 319 KLSSLPEDMHHLTTLKLLAIGGC 341
             +     + +   L+ L +   
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNN 229

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 137 PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP 185
           P+ +  LK +  L++S N+   ++P     LQ            L   P
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	377
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.36
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.63
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.07

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.2e-22  Score=181.43  Aligned_cols=255  Identities=17%  Similarity=0.194  Sum_probs=179.3

Q ss_pred             CCcEEEEEecccccc-chhhhhcccCCceEEEeec-CCchhhHHHHHHHhhccCcccEEEeCCCccccC-CcCcCCCCcc
Q 017094           70 RVRHLSFAAANALRN-DFSSLLSYLGRLRTIFFST-DDEKTSQSFVESCFSKSQFLRVLNLRESALEVC-PRKMGNLKHM  146 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L  146 (377)
                      +++.|++.++..... .+|+.+.++++|++|++++ |.+.   ..++..+.++++|++|+|++|.+..+ +..+..+.+|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~---g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccc---cccccccccccccchhhhccccccccccccccchhhh
Confidence            677777777665542 4566777788888888775 4332   23455677777888888887777643 4446677777


Q ss_pred             ceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccc-cEeeecCcccccC-cccCCCCCCCCEEEccC
Q 017094          147 RYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVIL-RVFALTTKQKSLQ-ESGIRSLGSLRCLTISG  224 (377)
Q Consensus       147 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~  224 (377)
                      +++++++|.....+|..+.++++|+++++++|.....+|..+..+..+ +.+++++|.++.. +..+..+. ...+++..
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~  206 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            888877776666777777777778888887776666677777776665 6677777776643 33444443 34577766


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLK  304 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  304 (377)
                      +......+..++.+++++.++++++...                  ..+ ..+  ..+++|+.|++++|...+.+|++++
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~------------------~~~-~~~--~~~~~L~~L~Ls~N~l~g~iP~~l~  265 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLA------------------FDL-GKV--GLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEEC------------------CBG-GGC--CCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             cccccccccccccccccccccccccccc------------------ccc-ccc--ccccccccccCccCeecccCChHHh
Confidence            6655556666666667777666665432                  133 334  6778999999999887668999999


Q ss_pred             CCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCC
Q 017094          305 DLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKP  350 (377)
Q Consensus       305 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  350 (377)
                      .+++|++|+|++|.....+|. +.++++|+.+++.+|+.+...|.+
T Consensus       266 ~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             CCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            999999999999966557885 578899999999999887776544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=1e-20  Score=168.79  Aligned_cols=247  Identities=17%  Similarity=0.171  Sum_probs=161.1

Q ss_pred             CceEEEeecCCchhhHHHHHHHhhccCcccEEEeCC-Cccc-cCCcCcCCCCccceEeccCCCcccccChhhcCCCcccE
Q 017094           95 RLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRE-SALE-VCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQT  172 (377)
Q Consensus        95 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  172 (377)
                      +++.|+++++.... ...++..+.++++|++|+|++ |.+. .+|..++++++|++|++++|......+..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g-~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPK-PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSS-CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCC-CCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            56777777664421 112345567777777777765 4554 56777777777777777766444445555666777777


Q ss_pred             EeccCccccccCchhhcccccccEeeecCcccc-cCcccCCCCCCC-CEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094          173 LDLEGCLELEELPKDIRYLVILRVFALTTKQKS-LQESGIRSLGSL-RCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       173 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      +++++|.....+|..+.++++|+.+++++|.+. ..|..+..+..+ +.+.+++|+.....+..++.+.           
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-----------  198 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-----------  198 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-----------
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence            777776666666777777777777777777665 344555555554 5666666554443333333332           


Q ss_pred             CCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCC
Q 017094          251 DRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHL  330 (377)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  330 (377)
                              ...+++..+.....+|...  ..+++++.++++++..... +..+..+++|+.|++++|.....+|..+.++
T Consensus       199 --------~~~l~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L  267 (313)
T d1ogqa_         199 --------LAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             --------CSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             --------ccccccccccccccccccc--ccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCC
Confidence                    2233344444444666666  7889999999998765444 4468889999999999997666899999999


Q ss_pred             CCcCeeeccCCCCcc-ccCCCCCCCCCCCCCccceEEeCCCc
Q 017094          331 TTLKLLAIGGCPALS-ERCKPPTGEDWPKIAHITQIELDDEI  371 (377)
Q Consensus       331 ~~L~~L~l~~c~~l~-~~~~~~~~~~~~~i~~~~~~~~~~~~  371 (377)
                      ++|++|++++|. ++ .+|.      +..+.++..+.+.++.
T Consensus       268 ~~L~~L~Ls~N~-l~g~iP~------~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         268 KFLHSLNVSFNN-LCGEIPQ------GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTCCEEECCSSE-EEEECCC------STTGGGSCGGGTCSSS
T ss_pred             CCCCEEECcCCc-ccccCCC------cccCCCCCHHHhCCCc
Confidence            999999999985 44 3332      2345666666655554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=5.3e-19  Score=156.87  Aligned_cols=247  Identities=16%  Similarity=0.122  Sum_probs=147.1

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL  199 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  199 (377)
                      +++++|+|++|.++.+|+ .+..+++|++|++++|......|.++..+++|++|++++| .+..+|..  ....++.|..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEK--MPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS--CCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccc--hhhhhhhhhc
Confidence            456666666666666654 4666666666666665433333455666666666666665 44555543  2345666666


Q ss_pred             cCcccccCc-ccCCCCCCCCEEEccCCCCch--hhHHhcccCcccchhccccCCCCc---cCCCccceEEeccccccccc
Q 017094          200 TTKQKSLQE-SGIRSLGSLRCLTISGCRDLE--HLFEEIEQLSLLRTLLIHSYDDRK---NTRPRLRRVFIKEITQLLEL  273 (377)
Q Consensus       200 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~L~~L~l~~~~~~~~l  273 (377)
                      ..+.+...+ ..+.....+..+....+....  .....+..+++|+.+++++|....   ..+++|++|++.++......
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCC
Confidence            666555432 234445555666655543221  122344556666666666665433   23456777777776555555


Q ss_pred             chhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCC--
Q 017094          274 PQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPP--  351 (377)
Q Consensus       274 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--  351 (377)
                      +..+  ..++.++.|++++|......+.++.++++|++|++++| .++.+|..+..+++|++|++++|. ++.+....  
T Consensus       188 ~~~~--~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~  263 (305)
T d1xkua_         188 AASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFC  263 (305)
T ss_dssp             TGGG--TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSS
T ss_pred             hhHh--hccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCc-cCccChhhcc
Confidence            5555  66677888888777544444556677788888888877 566777777778888888888873 55543211  


Q ss_pred             CCCCCCCCCccceEEeCCCccCC
Q 017094          352 TGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       352 ~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      .-.......++..+.+.+++++.
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CcchhcccCCCCEEECCCCcCcc
Confidence            01112234567777777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=4.3e-19  Score=162.34  Aligned_cols=271  Identities=19%  Similarity=0.232  Sum_probs=182.2

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      ++++|.+.++.+...+   .+..+++|++|++++|......     .++.+++|++|++++|.+..++ .++.+++|+.|
T Consensus        45 ~l~~L~l~~~~I~~l~---gl~~L~nL~~L~Ls~N~l~~l~-----~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L  115 (384)
T d2omza2          45 QVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDIT-----PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGL  115 (384)
T ss_dssp             TCCEEECCSSCCCCCT---TGGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred             CCCEEECCCCCCCCcc---ccccCCCCCEEeCcCCcCCCCc-----cccCCccccccccccccccccc-ccccccccccc
Confidence            7899999988877643   5778899999999998765321     2888999999999999988775 47889999999


Q ss_pred             eccCCCcccccC----------------------------------------------------------------hhhc
Q 017094          150 DLSRNSKIKKLP----------------------------------------------------------------KSIC  165 (377)
Q Consensus       150 ~l~~~~~~~~l~----------------------------------------------------------------~~~~  165 (377)
                      +++++. ...++                                                                ....
T Consensus       116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         116 TLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            987543 22111                                                                1223


Q ss_pred             CCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhc
Q 017094          166 ELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLL  245 (377)
Q Consensus       166 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  245 (377)
                      .+++++.+++++| .+..++. ...+++|+.|++++|.++.. +.+..+++|+.+++++|.... ++ .++.+++|+.|+
T Consensus       195 ~l~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~  269 (384)
T d2omza2         195 KLTNLESLIATNN-QISDITP-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELK  269 (384)
T ss_dssp             GCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             cccccceeeccCC-ccCCCCc-ccccCCCCEEECCCCCCCCc-chhhcccccchhccccCccCC-CC-cccccccCCEee
Confidence            3455666666654 3333322 45566677777777766654 356666777777777765433 22 355667777777


Q ss_pred             cccCCCCc----cCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCC
Q 017094          246 IHSYDDRK----NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLS  321 (377)
Q Consensus       246 l~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  321 (377)
                      ++++....    ...+.++.+.+..+. +..++. +  ..+++++.|++++|. +..++ .+..+++|++|++++| .++
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~-l~~~~~-~--~~~~~l~~L~ls~n~-l~~l~-~l~~l~~L~~L~L~~n-~l~  342 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQ-LEDISP-I--SNLKNLTYLTLYFNN-ISDIS-PVSSLTKLQRLFFANN-KVS  342 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSC-CSCCGG-G--GGCTTCSEEECCSSC-CSCCG-GGGGCTTCCEEECCSS-CCC
T ss_pred             ccCcccCCCCccccccccccccccccc-cccccc-c--chhcccCeEECCCCC-CCCCc-ccccCCCCCEEECCCC-CCC
Confidence            76665443    223456666665543 223332 3  677889999999875 45554 3778999999999998 566


Q ss_pred             CCCcCCCCCCCcCeeeccCCCCccccCCCCCCCCCCCCCccceEEeCCC
Q 017094          322 SLPEDMHHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHITQIELDDE  370 (377)
Q Consensus       322 ~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~  370 (377)
                      .++ .+..+++|++|++++|. +++.+.      +..+.+++.+.+.++
T Consensus       343 ~l~-~l~~l~~L~~L~l~~N~-l~~l~~------l~~l~~L~~L~L~~N  383 (384)
T d2omza2         343 DVS-SLANLTNINWLSAGHNQ-ISDLTP------LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCG-GGGGCTTCCEEECCSSC-CCBCGG------GTTCTTCSEEECCCE
T ss_pred             CCh-hHcCCCCCCEEECCCCc-CCCChh------hccCCCCCEeeCCCC
Confidence            666 47889999999999884 555431      335677888877654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.5e-19  Score=153.08  Aligned_cols=197  Identities=23%  Similarity=0.248  Sum_probs=134.4

Q ss_pred             cCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccCchhhcccccccEee
Q 017094          120 SQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFA  198 (377)
Q Consensus       120 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  198 (377)
                      ...+..++.+++.++.+|+.+.  +++++|++++| .+..+| .++..+++|++|++++| .+..+|. +..+++|+.|+
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCC-cCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccc
Confidence            3445556777777777776553  56788888865 455554 45677888888888876 4555553 46777888888


Q ss_pred             ecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhh
Q 017094          199 LTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL  278 (377)
Q Consensus       199 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  278 (377)
                      +++|.+...+..+..+++|+.|+++++......+..+..+.+++.|.+++|...                   .++...+
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-------------------~l~~~~~  144 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------------------TLPPGLL  144 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------------------CCCTTTT
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccccccc-------------------eeccccc
Confidence            888877776667777888888888777654433444556666666666665432                   3333222


Q ss_pred             hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                       ..+++|+.+++++|......++.+..+++|++|+|++|. ++.+|..+..+++|+.|++.++|
T Consensus       145 -~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         145 -TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             -TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             -cccccchhcccccccccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence             456778888888876443344557778888888888874 66788777788888888888776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=3.4e-18  Score=151.60  Aligned_cols=243  Identities=16%  Similarity=0.167  Sum_probs=147.6

Q ss_pred             CCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccc
Q 017094           68 PKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMR  147 (377)
Q Consensus        68 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~  147 (377)
                      ++.+++|.+.++.+.... +..|..+++|++|+++++....   ..+..+..+++|++|++++|.++.+|..+  ...+.
T Consensus        30 ~~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~l~~n~~~~---i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~  103 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISK---ISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQ  103 (305)
T ss_dssp             CTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCC
T ss_pred             CCCCCEEECcCCcCCCcC-hhHhhccccccccccccccccc---cchhhhhCCCccCEecccCCccCcCccch--hhhhh
Confidence            456666666666555432 2245666666666666654321   12234556666666666666666665432  24566


Q ss_pred             eEeccCCCcccccCh-hhcCCCcccEEeccCccc--cccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccC
Q 017094          148 YLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLE--LEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISG  224 (377)
Q Consensus       148 ~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~--~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~  224 (377)
                      .|.+..+ .+..++. .+.....+..++...+..  ....+..+..+++|+.+++++|.+...+..  .+++|+.|++.+
T Consensus       104 ~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~  180 (305)
T d1xkua_         104 ELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDG  180 (305)
T ss_dssp             EEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTT
T ss_pred             hhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCC
Confidence            6666644 3333332 233445555555554321  122234455666666777766666554322  245666777766


Q ss_pred             CCCchhhHHhcccCcccchhccccCCCCccCCCccceEEeccccccccc-chhhhhcCCCCccEEeecCCCCCCCCCccC
Q 017094          225 CRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLEL-PQWLLQCCTDTLHTLVIGDCPNFMALPGSL  303 (377)
Q Consensus       225 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  303 (377)
                      |......+..+..++.++.|++++|..                   ..+ +.++  ..+++|++|++++|. +..+|.++
T Consensus       181 n~~~~~~~~~~~~~~~l~~L~~s~n~l-------------------~~~~~~~~--~~l~~L~~L~L~~N~-L~~lp~~l  238 (305)
T d1xkua_         181 NKITKVDAASLKGLNNLAKLGLSFNSI-------------------SAVDNGSL--ANTPHLRELHLNNNK-LVKVPGGL  238 (305)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCC-------------------CEECTTTG--GGSTTCCEEECCSSC-CSSCCTTT
T ss_pred             CcCCCCChhHhhccccccccccccccc-------------------cccccccc--cccccceeeeccccc-cccccccc
Confidence            665554455555666666666655432                   233 3344  678999999999984 77889899


Q ss_pred             CCCccCceecccCcccCCCCCc-------CCCCCCCcCeeeccCCC
Q 017094          304 KDLEALETLAIRGCPKLSSLPE-------DMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       304 ~~l~~L~~L~l~~~~~~~~~~~-------~l~~l~~L~~L~l~~c~  342 (377)
                      ..+++|++|++++| .++.++.       .....++|+.|++.++|
T Consensus       239 ~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         239 ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            99999999999998 4666543       23457889999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.5e-17  Score=151.96  Aligned_cols=258  Identities=16%  Similarity=0.172  Sum_probs=181.5

Q ss_pred             cccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcc
Q 017094           91 SYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSL  170 (377)
Q Consensus        91 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L  170 (377)
                      ..+.+|++|+++++.....     ..+..+++|++|++++|.++.+++ ++.+++|++|++++| .+..+++ ++++++|
T Consensus        41 ~~l~~l~~L~l~~~~I~~l-----~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L  112 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNL  112 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTC
T ss_pred             HHhCCCCEEECCCCCCCCc-----cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-ccccccc-ccccccc
Confidence            4567899999998865422     237789999999999999998874 899999999999987 5666654 8899999


Q ss_pred             cEEeccCcccccc---------------------------------------------------------------Cchh
Q 017094          171 QTLDLEGCLELEE---------------------------------------------------------------LPKD  187 (377)
Q Consensus       171 ~~L~l~~~~~~~~---------------------------------------------------------------~p~~  187 (377)
                      +.|++.++.....                                                               .+..
T Consensus       113 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (384)
T d2omza2         113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV  192 (384)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            9999876532110                                                               0012


Q ss_pred             hcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCc----cCCCccceEE
Q 017094          188 IRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRK----NTRPRLRRVF  263 (377)
Q Consensus       188 l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~L~~L~  263 (377)
                      ...+++++.++++++.+...+ ....+++|+.|++.+|.... + ..+..+++|+.|++++|....    ...++|++|+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccccccceeeccCCccCCCC-cccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCcccccccCCEee
Confidence            344566777777777666553 34556778888887775432 2 346677778888887776544    3345778888


Q ss_pred             ecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCC
Q 017094          264 IKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPA  343 (377)
Q Consensus       264 l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  343 (377)
                      ++++. +..++. +  ..++.++.+.+..|. +..++ .+..+++++.|++++| .+++++. +..+++|++|++++| .
T Consensus       270 l~~~~-l~~~~~-~--~~~~~l~~l~~~~n~-l~~~~-~~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n-~  340 (384)
T d2omza2         270 LGANQ-ISNISP-L--AGLTALTNLELNENQ-LEDIS-PISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN-K  340 (384)
T ss_dssp             CCSSC-CCCCGG-G--TTCTTCSEEECCSSC-CSCCG-GGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-C
T ss_pred             ccCcc-cCCCCc-c--ccccccccccccccc-ccccc-ccchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC-C
Confidence            77653 234433 2  566777888777654 33333 4678899999999998 5566654 788999999999999 5


Q ss_pred             ccccCCCCCCCCCCCCCccceEEeCCCccCC
Q 017094          344 LSERCKPPTGEDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       344 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  374 (377)
                      +++..      .+..+.+++.+.+.++.+++
T Consensus       341 l~~l~------~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         341 VSDVS------SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CCCCG------GGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCh------hHcCCCCCCEEECCCCcCCC
Confidence            66542      14456788888888887763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-17  Score=145.82  Aligned_cols=202  Identities=18%  Similarity=0.183  Sum_probs=126.5

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccC-chhhcccccccEee
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFA  198 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~  198 (377)
                      +.+++|+|++|.++.+|. .+.++++|++|+++++......+..+..+..++.+....+..+..+ +..+.++++|+.|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            456777777777776654 4677777777777755332233334455667777766555455554 44567777777777


Q ss_pred             ecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhh
Q 017094          199 LTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWL  277 (377)
Q Consensus       199 l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  277 (377)
                      +++|.+...+ ..+...++|+.+++.+|+.....+..+..+++|+.|++++|...                   .++...
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-------------------~l~~~~  172 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-------------------SVPERA  172 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------EECTTT
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-------------------ccchhh
Confidence            7777765443 45566777777777776643322344555666666666665422                   333222


Q ss_pred             hhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCC
Q 017094          278 LQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       278 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  342 (377)
                      + ..+++|+.+++++|......|.++..+++|++|++++|...+..+..+..+++|+.|+++++|
T Consensus       173 f-~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         173 F-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             T-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             h-ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            2 456777777777776555556777777777777777775544444556677777777777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.2e-17  Score=143.28  Aligned_cols=175  Identities=23%  Similarity=0.261  Sum_probs=114.8

Q ss_pred             CcccEEEeCCCccccCC-cCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeee
Q 017094          121 QFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFAL  199 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  199 (377)
                      +++++|+|++|.+..+| ..+..+++|++|++++| .++.+|. ++.+++|++|++++| .+...+..+..+++|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccccc-cccccccccccccccccccc
Confidence            46777777777777665 35677777777777765 5556554 456777777777776 45555666777777777777


Q ss_pred             cCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhh
Q 017094          200 TTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL  278 (377)
Q Consensus       200 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  278 (377)
                      +++.+...+ ..+..+.+++.|.+.+|......+..+..+++|+.+++++|...                   .++...+
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-------------------~~~~~~~  168 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-------------------ELPAGLL  168 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-------------------CCCTTTT
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhccccccccc-------------------ccCcccc
Confidence            777666543 45566777777777776543322333455666777766665432                   3332221


Q ss_pred             hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCccc
Q 017094          279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPK  319 (377)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  319 (377)
                       ..+++|++|++++|. +..+|+.+..+++|+.|+|++|+.
T Consensus       169 -~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         169 -NGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             -TTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             -ccccccceeecccCC-CcccChhHCCCCCCCEEEecCCCC
Confidence             566778888888765 557777777788888888887753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.3e-16  Score=131.14  Aligned_cols=189  Identities=19%  Similarity=0.245  Sum_probs=127.8

Q ss_pred             hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEe
Q 017094          118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVF  197 (377)
Q Consensus       118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L  197 (377)
                      ..+.+|+.|++.+|.++.+ +.+..+++|++|++++| .+..+++ +..+++|+++++++| ....++ .+..+++|+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCc-eeecccc-ccccccccccccccc-cccccc-ccccccccccc
Confidence            4456778888888877776 35777888888888765 4444443 677788888888775 344453 46677778888


Q ss_pred             eecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhh
Q 017094          198 ALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWL  277 (377)
Q Consensus       198 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  277 (377)
                      .++++..... ..+...+.++.+.+.++.....  ..+..+++|+.|.+++|...                   ..+. +
T Consensus       113 ~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~-------------------~~~~-l  169 (227)
T d1h6ua2         113 DLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-------------------DLTP-L  169 (227)
T ss_dssp             ECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC-------------------CCGG-G
T ss_pred             cccccccccc-chhccccchhhhhchhhhhchh--hhhccccccccccccccccc-------------------cchh-h
Confidence            8877766554 3566677777777776654332  22455666666666655432                   2222 2


Q ss_pred             hhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccC
Q 017094          278 LQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGG  340 (377)
Q Consensus       278 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  340 (377)
                        ..+++|++|++++|. +..++. +.++++|++|++++| .+++++. +.++++|+.|++++
T Consensus       170 --~~l~~L~~L~Ls~n~-l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         170 --ANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             --TTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             --cccccceecccCCCc-cCCChh-hcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence              567888889888874 556653 678888999999888 5676764 67888888888763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=138.58  Aligned_cols=204  Identities=24%  Similarity=0.246  Sum_probs=145.2

Q ss_pred             CCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCC-cCcCCCCccceEeccCCCccccc-ChhhcCCCccc
Q 017094           94 GRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCP-RKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQ  171 (377)
Q Consensus        94 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~  171 (377)
                      +.++.|++++|.+..   ..+..+..+++|++|+++++.+..++ ..+..+..++.+....+..+..+ +..+..+++|+
T Consensus        32 ~~~~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEECcCCcCCC---CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCC
Confidence            567888888876542   22345778888999999888887554 34566788888877655566655 45577888899


Q ss_pred             EEeccCccccccCchhhcccccccEeeecCcccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCC
Q 017094          172 TLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYD  250 (377)
Q Consensus       172 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  250 (377)
                      +|++++|......+..+..+.+|+.+++++|.++.++ ..+..+++|+.|++++|....-.+..+..+++|+.+.+++|.
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            9999887543444556677888899999988888764 456778889999998887544334556777888888887765


Q ss_pred             CCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccC
Q 017094          251 DRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKL  320 (377)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  320 (377)
                      ...                  -.|.++  ..+++|++|++++|......+.++..+++|++|++++|+..
T Consensus       189 l~~------------------i~~~~f--~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         189 VAH------------------VHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCE------------------ECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccc------------------cChhHh--hhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            432                  234444  66778888888887655555566778888888888877543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.4e-16  Score=137.87  Aligned_cols=219  Identities=18%  Similarity=0.175  Sum_probs=109.1

Q ss_pred             ccEEEeCCCccccCCcCcCCCCccceEeccCCCccc-ccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecC
Q 017094          123 LRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIK-KLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTT  201 (377)
Q Consensus       123 L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  201 (377)
                      ...+.+................+|++|++++|.... .++..+..+++|++|++++|......+..+..+++|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            344455444433322233344567777776553221 2334455666777777776643334445566666677777766


Q ss_pred             cc-cccC--cccCCCCCCCCEEEccCCCCch--hhHHhccc-CcccchhccccCCC-Cc--------cCCCccceEEecc
Q 017094          202 KQ-KSLQ--ESGIRSLGSLRCLTISGCRDLE--HLFEEIEQ-LSLLRTLLIHSYDD-RK--------NTRPRLRRVFIKE  266 (377)
Q Consensus       202 ~~-~~~~--~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~-l~~L~~L~l~~~~~-~~--------~~~~~L~~L~l~~  266 (377)
                      |. ++..  ......+++|++|++++|....  .+...+.. ++.|+.|+++++.. .+        ..+++|++|++++
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            42 3211  1122346667777776664332  12222222 34566666655421 11        2234555555555


Q ss_pred             cccccc-cchhhhhcCCCCccEEeecCCCCCCC-CCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCc
Q 017094          267 ITQLLE-LPQWLLQCCTDTLHTLVIGDCPNFMA-LPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPAL  344 (377)
Q Consensus       267 ~~~~~~-l~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  344 (377)
                      |..+++ ....+  ..+++|++|++++|..+.. ....+..+++|+.|++++|-.-..+......+|+|+.    +|..+
T Consensus       185 ~~~itd~~~~~l--~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i----~~~~l  258 (284)
T d2astb2         185 SVMLKNDCFQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI----NCSHF  258 (284)
T ss_dssp             CTTCCGGGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEE----SCCCS
T ss_pred             ccCCCchhhhhh--cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccccc----cCccC
Confidence            554432 22333  4567777777777654432 2233556777777777776222222222234555542    45555


Q ss_pred             ccc
Q 017094          345 SER  347 (377)
Q Consensus       345 ~~~  347 (377)
                      +..
T Consensus       259 s~~  261 (284)
T d2astb2         259 TTI  261 (284)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.1e-17  Score=140.91  Aligned_cols=215  Identities=18%  Similarity=0.158  Sum_probs=148.4

Q ss_pred             cEEEeCCCccccCCcCcCCC--CccceEeccCCCcccccChhhcCCCcccEEeccCcccccc-CchhhcccccccEeeec
Q 017094          124 RVLNLRESALEVCPRKMGNL--KHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEE-LPKDIRYLVILRVFALT  200 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~  200 (377)
                      +.+|++++.+.  |..+..+  .....+.++.. .............+|++|++++|..... ++..+..+++|++|+++
T Consensus         3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~-~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCC--chHHHHHHhccceEeecccc-ccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            36677766543  1111111  12344555432 2222222233567899999998743322 45567899999999999


Q ss_pred             CcccccC-cccCCCCCCCCEEEccCCCCchh--hHHhcccCcccchhccccCCCCc---------cCCCccceEEecccc
Q 017094          201 TKQKSLQ-ESGIRSLGSLRCLTISGCRDLEH--LFEEIEQLSLLRTLLIHSYDDRK---------NTRPRLRRVFIKEIT  268 (377)
Q Consensus       201 ~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~---------~~~~~L~~L~l~~~~  268 (377)
                      ++.+... ...++.+++|+.|++++|..++.  +......+++|++|++++|....         ..++.|+.|++++|.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            9987632 35678899999999999876543  33335678999999999987654         335789999999874


Q ss_pred             -cccccchhhhhcCCCCccEEeecCCCCCC-CCCccCCCCccCceecccCcccCCC-CCcCCCCCCCcCeeeccCC
Q 017094          269 -QLLELPQWLLQCCTDTLHTLVIGDCPNFM-ALPGSLKDLEALETLAIRGCPKLSS-LPEDMHHLTTLKLLAIGGC  341 (377)
Q Consensus       269 -~~~~l~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~c  341 (377)
                       .+.+-....+...+|+|++|++++|..++ .....+..+++|++|++++|..+++ ....+.++|+|+.|++.+|
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             33332222222678999999999987655 3555677899999999999987763 3345678999999999998

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=6.1e-15  Score=122.84  Aligned_cols=146  Identities=20%  Similarity=0.249  Sum_probs=74.1

Q ss_pred             hcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccch
Q 017094          164 ICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRT  243 (377)
Q Consensus       164 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  243 (377)
                      +..+++|++|++++| .+..++ .++.+++|++|++++|.++..+ .+..+++|+.|++.+|....  ...+..++.++.
T Consensus        64 l~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~  138 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLES  138 (210)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCE
T ss_pred             HhhCCCCCEEeCCCc-cccCcc-ccccCccccccccccccccccc-cccccccccccccccccccc--cccccccccccc
Confidence            344444444444443 233333 2344444555555544444332 34555555555555544321  123444455555


Q ss_pred             hccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCC
Q 017094          244 LLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSL  323 (377)
Q Consensus       244 L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~  323 (377)
                      ++++++...                   +.+ ..  ..+++|+.+++++|. +..++. +.++++|++|++++| .++++
T Consensus       139 l~~~~n~l~-------------------~~~-~~--~~l~~L~~l~l~~n~-l~~i~~-l~~l~~L~~L~Ls~N-~i~~l  193 (210)
T d1h6ta2         139 LYLGNNKIT-------------------DIT-VL--SRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDL  193 (210)
T ss_dssp             EECCSSCCC-------------------CCG-GG--GGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBC
T ss_pred             ccccccccc-------------------ccc-cc--ccccccccccccccc-cccccc-ccCCCCCCEEECCCC-CCCCC
Confidence            555444321                   111 11  445667777777664 334442 566777777777776 45566


Q ss_pred             CcCCCCCCCcCeeeccC
Q 017094          324 PEDMHHLTTLKLLAIGG  340 (377)
Q Consensus       324 ~~~l~~l~~L~~L~l~~  340 (377)
                      + .+.++++|++|++++
T Consensus       194 ~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCSEEEEEE
T ss_pred             h-hhcCCCCCCEEEccC
Confidence            5 366777777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=8.1e-15  Score=122.11  Aligned_cols=166  Identities=19%  Similarity=0.256  Sum_probs=131.9

Q ss_pred             ccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEee
Q 017094          119 KSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFA  198 (377)
Q Consensus       119 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  198 (377)
                      .+..|+.|+++++.+..++ .+..+++|++|++++| .+..++. ++.+++|++|++++| .+..+| .+..+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccc-cccccccccccc
Confidence            3568999999999998775 4788999999999976 5666664 788999999999987 566676 588899999999


Q ss_pred             ecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhh
Q 017094          199 LTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLL  278 (377)
Q Consensus       199 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~  278 (377)
                      ++++..... ..+..++.++.+++.+|....  +..+..+++|+.+++++|...                   .++. + 
T Consensus       119 l~~~~~~~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-------------------~i~~-l-  174 (210)
T d1h6ta2         119 LEHNGISDI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-------------------DIVP-L-  174 (210)
T ss_dssp             CTTSCCCCC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-------------------CCGG-G-
T ss_pred             ccccccccc-ccccccccccccccccccccc--ccccccccccccccccccccc-------------------cccc-c-
Confidence            999988765 468889999999999887543  234566778888888776532                   3332 3 


Q ss_pred             hcCCCCccEEeecCCCCCCCCCccCCCCccCceecccC
Q 017094          279 QCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRG  316 (377)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~  316 (377)
                       ..+++|++|++++|. +..++ .+.++++|++|+|++
T Consensus       175 -~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 -AGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -TTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEE
T ss_pred             -cCCCCCCEEECCCCC-CCCCh-hhcCCCCCCEEEccC
Confidence             678999999999985 66776 588999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=122.57  Aligned_cols=190  Identities=21%  Similarity=0.230  Sum_probs=135.9

Q ss_pred             hcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCc
Q 017094           90 LSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQS  169 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~  169 (377)
                      ..++.+|+.|.+.++....    + ..+..+++|++|++++|.+..++ .+..+++|+++++++| ..+.++ .+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~----l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT----I-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGN-PLKNVS-AIAGLQS  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC----C-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSC-CCSCCG-GGTTCTT
T ss_pred             HHHcCCcCEEECCCCCCCc----c-hhHhcCCCCcEeecCCceeeccc-cccccccccccccccc-cccccc-ccccccc
Confidence            4566788888888875432    2 23678889999999988887664 3788888999998865 455655 4778889


Q ss_pred             ccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccC
Q 017094          170 LQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSY  249 (377)
Q Consensus       170 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  249 (377)
                      |+.+++++|.. ... ..+...+.++.+.++++.+... ..+..+++|+.|.+++|.....  ..++++++|+.|++++|
T Consensus       109 L~~l~l~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         109 IKTLDLTSTQI-TDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN  183 (227)
T ss_dssp             CCEEECTTSCC-CCC-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             ccccccccccc-ccc-chhccccchhhhhchhhhhchh-hhhccccccccccccccccccc--hhhcccccceecccCCC
Confidence            99999887643 223 3366777888888888776654 3567788899999988765332  23667777777777766


Q ss_pred             CCCccCCCccceEEecccccccccchhhhhcCCCCccEEeecCCCCCCCCCccCCCCccCceecccC
Q 017094          250 DDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRG  316 (377)
Q Consensus       250 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~  316 (377)
                      ..                   .+++. +  ..+++|++|++++|. +..++. +.++++|+.|++++
T Consensus       184 ~l-------------------~~l~~-l--~~l~~L~~L~Ls~N~-lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         184 KI-------------------SDISP-L--ASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CC-------------------CCCGG-G--GGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEE
T ss_pred             cc-------------------CCChh-h--cCCCCCCEEECcCCc-CCCCcc-cccCCCCCEEEeeC
Confidence            42                   23432 3  677889999999874 666663 77889999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=2.1e-14  Score=118.45  Aligned_cols=53  Identities=28%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCee
Q 017094          280 CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLL  336 (377)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  336 (377)
                      ..+++|+.|++.+|. +..++ .+.++++|++|++++| .+++++ .+..+++|++|
T Consensus       147 ~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N-~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSN-KVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEE
T ss_pred             ccccccccccccccc-ccCCc-cccCCCCCCEEECCCC-CCCCCc-cccCCCCCCcC
Confidence            344556666665543 33333 2556666666666666 345554 24556666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=1.9e-13  Score=122.51  Aligned_cols=60  Identities=27%  Similarity=0.269  Sum_probs=46.2

Q ss_pred             CCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCC
Q 017094          281 CTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCK  349 (377)
Q Consensus       281 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  349 (377)
                      .+++|++|++++|. +..+|.   .+++|++|++++| .++.+|..   +++|++|++++|+ ++.++.
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp~---~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELPA---LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSSCCC
T ss_pred             cCCCCCEEECCCCc-cCcccc---ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CCCCCc
Confidence            45789999999875 567775   3678999999987 56777753   4689999999997 776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=3.8e-14  Score=116.91  Aligned_cols=158  Identities=19%  Similarity=0.249  Sum_probs=83.3

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      ++++|.+.++.+...+   .+..+++|++|++++|......     .+..+++|++|++++|.+..++ .+..+++|++|
T Consensus        41 ~l~~L~l~~~~i~~l~---~l~~l~nL~~L~Ls~N~l~~~~-----~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          41 QVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDIT-----PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGL  111 (199)
T ss_dssp             TCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             CCCEEECCCCCCCCcc---ccccCCCcCcCccccccccCcc-----cccCCccccccccccccccccc-ccccccccccc
Confidence            5556666555554432   3455666666666665443211     1555666666666666655544 35556666666


Q ss_pred             eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094          150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE  229 (377)
Q Consensus       150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  229 (377)
                      +++++. ....+ .+..+++|+.|++++| .+..++ .+..+++|+.|++.+|.++..+ .++.+++|+.|++++|+. +
T Consensus       112 ~l~~~~-~~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i-~  185 (199)
T d2omxa2         112 TLFNNQ-ITDID-PLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKV-S  185 (199)
T ss_dssp             ECCSSC-CCCCG-GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC-C
T ss_pred             cccccc-ccccc-ccchhhhhHHhhhhhh-hhcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCC-C
Confidence            666442 22222 2555666666666654 233333 3555666666666666555542 455666666666666543 2


Q ss_pred             hhHHhcccCcccch
Q 017094          230 HLFEEIEQLSLLRT  243 (377)
Q Consensus       230 ~~~~~l~~l~~L~~  243 (377)
                      .++ .++.+++|++
T Consensus       186 ~i~-~l~~L~~L~~  198 (199)
T d2omxa2         186 DIS-VLAKLTNLES  198 (199)
T ss_dssp             CCG-GGGGCTTCSE
T ss_pred             CCc-cccCCCCCCc
Confidence            222 3444555444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.9e-14  Score=120.60  Aligned_cols=197  Identities=16%  Similarity=0.219  Sum_probs=117.7

Q ss_pred             CcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccC-hhhcCCCcccEEeccCccccccC-chhhcccccccEe
Q 017094          121 QFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLP-KSICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L  197 (377)
                      +++++|++++|.+..+|. .+.++++|++|++++|.....++ .++..+++++++.+..+..+... +..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            467888888888877765 46778888888888765544443 34667788888877654444443 4456778888888


Q ss_pred             eecCcccccCcccCCCCCCCCEE---EccCCCCchhhH-HhcccCc-ccchhccccCCCCccCCCccceEEecccccccc
Q 017094          198 ALTTKQKSLQESGIRSLGSLRCL---TISGCRDLEHLF-EEIEQLS-LLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLE  272 (377)
Q Consensus       198 ~l~~~~~~~~~~~l~~l~~L~~L---~l~~~~~~~~~~-~~l~~l~-~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (377)
                      +++++.+...+ ....+.+++.+   ...++. ...++ ..+..++ .+..|++.++                   .+..
T Consensus       109 ~l~~~~l~~~~-~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n-------------------~l~~  167 (242)
T d1xwdc1         109 LISNTGIKHLP-DVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKN-------------------GIQE  167 (242)
T ss_dssp             EEESCCCCSCC-CCTTTCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSS-------------------CCCE
T ss_pred             ccchhhhcccc-cccccccccccccccccccc-cccccccccccccccceeeecccc-------------------cccc
Confidence            88887776542 33344444433   323222 22121 1122221 3333433332                   2334


Q ss_pred             cchhhhhcCCCCccEEeecCCCCCCCCCcc-CCCCccCceecccCcccCCCCCc-CCCCCCCcCeeeccCC
Q 017094          273 LPQWLLQCCTDTLHTLVIGDCPNFMALPGS-LKDLEALETLAIRGCPKLSSLPE-DMHHLTTLKLLAIGGC  341 (377)
Q Consensus       273 l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~c  341 (377)
                      ++...  ...+++.++....+..+..+|.. +.++++|++|++++|. ++.+|. .+.++++|+.+++.++
T Consensus       168 i~~~~--~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         168 IHNCA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             ECTTT--TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESS
T ss_pred             ccccc--ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCC
Confidence            55444  34566677766555667777654 6788999999998874 566654 4566666666665544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.45  E-value=3.3e-12  Score=114.20  Aligned_cols=264  Identities=17%  Similarity=0.200  Sum_probs=150.0

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceE
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYL  149 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L  149 (377)
                      ++++|++.+..+..  +|+   ..++|++|++++|.....    +   ..+.+|+.|++.++.+..++..   .+.|++|
T Consensus        39 ~l~~LdLs~~~L~~--lp~---~~~~L~~L~Ls~N~l~~l----p---~~~~~L~~L~l~~n~l~~l~~l---p~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPE---LPPHLESLVASCNSLTEL----P---ELPQSLKSLLVDNNNLKALSDL---PPLLEYL  103 (353)
T ss_dssp             TCSEEECTTSCCSC--CCS---CCTTCSEEECCSSCCSSC----C---CCCTTCCEEECCSSCCSCCCSC---CTTCCEE
T ss_pred             CCCEEEeCCCCCCC--CCC---CCCCCCEEECCCCCCccc----c---cchhhhhhhhhhhcccchhhhh---ccccccc
Confidence            56677777665543  332   246777777777654311    1   1245777777777777655432   1357778


Q ss_pred             eccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcccccCcccCCCCCCCCEEEccCCCCch
Q 017094          150 DLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQKSLQESGIRSLGSLRCLTISGCRDLE  229 (377)
Q Consensus       150 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  229 (377)
                      ++++| .+..+|. ++.+++|++|+++++ .....+..   ...+..+.+..+..... ..+..++.++.+.+.++....
T Consensus       104 ~L~~n-~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~---~~~l~~l~~~~~~~~~~-~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         104 GVSNN-QLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             ECCSS-CCSSCCC-CTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccc-ccccccc-hhhhccceeeccccc-cccccccc---cccccchhhcccccccc-ccccccccceecccccccccc
Confidence            88765 5666664 567777888887765 33333332   33455555555444332 456677788888877665321


Q ss_pred             h------------------hHHhcccCcccchhccccCCCCc--cCCCccceEEecccccccccchhhhhcCCCCccEEe
Q 017094          230 H------------------LFEEIEQLSLLRTLLIHSYDDRK--NTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHTLV  289 (377)
Q Consensus       230 ~------------------~~~~l~~l~~L~~L~l~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~L~  289 (377)
                      .                  .......++.|+.+.++++....  .....+..+.+.+.... ..+     ...+.+....
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~-~~~-----~~~~~l~~~~  250 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT-DLP-----ELPQSLTFLD  250 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCS-CCC-----CCCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc-----cccccccccc
Confidence            0                  01123445666777776654433  22334555555543221 111     1122333333


Q ss_pred             ecCCCC--C--------------CCCCccCCCCccCceecccCcccCCCCCcCCCCCCCcCeeeccCCCCccccCCCCCC
Q 017094          290 IGDCPN--F--------------MALPGSLKDLEALETLAIRGCPKLSSLPEDMHHLTTLKLLAIGGCPALSERCKPPTG  353 (377)
Q Consensus       290 l~~~~~--~--------------~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~  353 (377)
                      +..+..  +              ..++.....+++|++|++++| .++.+|.   .+++|+.|++++| .++.++..   
T Consensus       251 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N-~L~~l~~~---  322 (353)
T d1jl5a_         251 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEVPEL---  322 (353)
T ss_dssp             CCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCCC---
T ss_pred             cccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCC-cCCccccc---
Confidence            322110  0              012222345689999999998 5677885   3689999999988 46665422   


Q ss_pred             CCCCCCCccceEEeCCCccCC
Q 017094          354 EDWPKIAHITQIELDDEIIKS  374 (377)
Q Consensus       354 ~~~~~i~~~~~~~~~~~~~~~  374 (377)
                           ..+++.+.+.++++++
T Consensus       323 -----~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         323 -----PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             -----CTTCCEEECCSSCCSS
T ss_pred             -----cCCCCEEECcCCcCCC
Confidence                 3578888888887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=5.4e-13  Score=100.74  Aligned_cols=100  Identities=26%  Similarity=0.345  Sum_probs=75.8

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCcc
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTKQ  203 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  203 (377)
                      |+|++++|.++.++ .+..+++|++|++++| .++.+|+.++.+++|++|++++| .+..+| .+..+++|++|++++|.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCCc
Confidence            57788888887775 4777888888888865 66777777888888888888876 556665 47788888888888888


Q ss_pred             cccCc--ccCCCCCCCCEEEccCCCC
Q 017094          204 KSLQE--SGIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       204 ~~~~~--~~l~~l~~L~~L~l~~~~~  227 (377)
                      +...+  ..+..+++|+.|++++|+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            77543  4567788888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-13  Score=107.19  Aligned_cols=126  Identities=23%  Similarity=0.188  Sum_probs=71.1

Q ss_pred             hccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchh-hcccccccE
Q 017094          118 SKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKD-IRYLVILRV  196 (377)
Q Consensus       118 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~  196 (377)
                      .++..++.|+|++|.+..++..+..+++|++|++++| .+..++ .+..+++|++|++++| .+..+|.. +..+++|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccc-cccCCCcccccccccccc
Confidence            3444566666666666666555555666666666654 455553 2556666666666665 34444333 345666666


Q ss_pred             eeecCcccccCc--ccCCCCCCCCEEEccCCCCchh---hHHhcccCcccchhcc
Q 017094          197 FALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEH---LFEEIEQLSLLRTLLI  246 (377)
Q Consensus       197 L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l  246 (377)
                      |++++|.+...+  ..+..+++|+.|++.+|.....   .+..+..+++|+.|+-
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            666666665432  3455666677777766653221   1223455666666653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.9e-12  Score=107.88  Aligned_cols=203  Identities=15%  Similarity=0.176  Sum_probs=132.2

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCc-hhhcccccccEeeecC
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTT  201 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~  201 (377)
                      +.++.++..+..+|+.+.  +++++|++++| .+..+|. +|.++++|++|++++|.....++ ..+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            567777777888886653  58999999975 6777765 57889999999999886555443 3467788888888764


Q ss_pred             -ccccc-CcccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhh
Q 017094          202 -KQKSL-QESGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQ  279 (377)
Q Consensus       202 -~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~  279 (377)
                       +.+.. .+..+..+++|+.+++.++.... .+ ....+..++.+....                .++..+..++...+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~-~~~~~~~l~~l~~~~----------------~~n~~l~~i~~~~~~  149 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LP-DVHKIHSLQKVLLDI----------------QDNINIHTIERNSFV  149 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCS-CC-CCTTTCBSSCEEEEE----------------ESCTTCCEECTTSST
T ss_pred             cccccccccccccccccccccccchhhhcc-cc-ccccccccccccccc----------------ccccccccccccccc
Confidence             34443 34567888999999998876432 11 122233333332211                111122344333222


Q ss_pred             cCCCCccEEeecCCCCCCCCCccCCCCccCceecccCcccCCCCCc-CCCCCCCcCeeeccCCCCccccCC
Q 017094          280 CCTDTLHTLVIGDCPNFMALPGSLKDLEALETLAIRGCPKLSSLPE-DMHHLTTLKLLAIGGCPALSERCK  349 (377)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~c~~l~~~~~  349 (377)
                      .....++.|++.++. +..++.......+++++....+..++.+|. .+.++++|++|++++++ ++.++.
T Consensus       150 ~~~~~l~~L~l~~n~-l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~  218 (242)
T d1xwdc1         150 GLSFESVILWLNKNG-IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS  218 (242)
T ss_dssp             TSBSSCEEEECCSSC-CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS
T ss_pred             cccccceeeeccccc-ccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH
Confidence            333578889998754 556665555667777776555567888875 46889999999999986 555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.6e-13  Score=124.17  Aligned_cols=129  Identities=17%  Similarity=0.123  Sum_probs=70.8

Q ss_pred             CCCCCEEEccCCCCchh----hHHhcccCcccchhccccCCCCc-----------cCCCccceEEecccccccccchhh-
Q 017094          214 LGSLRCLTISGCRDLEH----LFEEIEQLSLLRTLLIHSYDDRK-----------NTRPRLRRVFIKEITQLLELPQWL-  277 (377)
Q Consensus       214 l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~-----------~~~~~L~~L~l~~~~~~~~l~~~~-  277 (377)
                      ...++.+++++|.....    ....+...+.++.++++++....           .....|+.++++++.........+ 
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            34455555555543221    22233445556666665554422           223467888887774332221111 


Q ss_pred             -hhcCCCCccEEeecCCCCCC----CCCccCC-CCccCceecccCcccCC----CCCcCCCCCCCcCeeeccCCC
Q 017094          278 -LQCCTDTLHTLVIGDCPNFM----ALPGSLK-DLEALETLAIRGCPKLS----SLPEDMHHLTTLKLLAIGGCP  342 (377)
Q Consensus       278 -~~~~~~~L~~L~l~~~~~~~----~l~~~~~-~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~c~  342 (377)
                       +....++|++|++++|...+    .+++.+. ..+.|++|++++|....    .++..+..+++|++|++++++
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence             11455678888888875311    2333332 46678888888885322    233445567888888888874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.7e-12  Score=102.83  Aligned_cols=129  Identities=15%  Similarity=0.133  Sum_probs=102.8

Q ss_pred             hhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChh-hcCC
Q 017094           89 LLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKS-ICEL  167 (377)
Q Consensus        89 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l  167 (377)
                      .+.++..+|+|++++|.....    +..+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+|+. +..+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i----~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l   86 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQAL   86 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred             hccCcCcCcEEECCCCCCCcc----CccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCccccccc
Confidence            366778899999999876533    234567899999999999999884 5889999999999976 56777654 4579


Q ss_pred             CcccEEeccCccccccCc--hhhcccccccEeeecCcccccCcc----cCCCCCCCCEEEccC
Q 017094          168 QSLQTLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQES----GIRSLGSLRCLTISG  224 (377)
Q Consensus       168 ~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~~  224 (377)
                      ++|++|++++| .+..++  ..+..+++|++|++++|.++..+.    .+..+++|+.|+...
T Consensus        87 ~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          87 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             cccccceeccc-cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence            99999999997 455554  357889999999999999876642    467789999997543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=3.4e-12  Score=96.21  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=82.4

Q ss_pred             eEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEecc
Q 017094           97 RTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLE  176 (377)
Q Consensus        97 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~  176 (377)
                      |+|++++|.+...     ..+..+++|++|++++|.+..+|+.++.+++|++|++++| .+..+|. ++.+++|++|+++
T Consensus         1 R~L~Ls~n~l~~l-----~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVL-----CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSC-----CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCC-----cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCc-cccccccCeEECC
Confidence            5678888766422     1367888999999999999999888899999999999976 6777764 8899999999999


Q ss_pred             CccccccCc--hhhcccccccEeeecCcccccC
Q 017094          177 GCLELEELP--KDIRYLVILRVFALTTKQKSLQ  207 (377)
Q Consensus       177 ~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~  207 (377)
                      +| .+..+|  ..+..+++|+.|++++|.+...
T Consensus        74 ~N-~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          74 NN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CC-ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            87 455554  4578899999999999988754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=8.3e-13  Score=118.32  Aligned_cols=240  Identities=14%  Similarity=0.083  Sum_probs=115.1

Q ss_pred             hhhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCcccc-----------CCcCcCCCCccceEeccCC
Q 017094           87 SSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALEV-----------CPRKMGNLKHMRYLDLSRN  154 (377)
Q Consensus        87 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-----------l~~~~~~l~~L~~L~l~~~  154 (377)
                      ...+.....++.|++++|.++. ....+...+...++|+.++++++....           +...+..+++|+.|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3445666677777777665431 223333445566677777776554321           1223445566777777655


Q ss_pred             Cccc----ccChhhcCCCcccEEeccCcccccc----Cch---------hhcccccccEeeecCcccccC-----cccCC
Q 017094          155 SKIK----KLPKSICELQSLQTLDLEGCLELEE----LPK---------DIRYLVILRVFALTTKQKSLQ-----ESGIR  212 (377)
Q Consensus       155 ~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~----~p~---------~l~~l~~L~~L~l~~~~~~~~-----~~~l~  212 (377)
                      ....    .+...+...++|++|++++|.....    +..         .....+.|+.+.++++.+...     ...+.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            3222    1333344566677777766532110    000         012344566666666554321     12234


Q ss_pred             CCCCCCEEEccCCCCchh-----hHHhcccCcccchhccccCCCCccCCCccceEEecccccccccchhhhhcCCCCccE
Q 017094          213 SLGSLRCLTISGCRDLEH-----LFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKEITQLLELPQWLLQCCTDTLHT  287 (377)
Q Consensus       213 ~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~L~~  287 (377)
                      .++.|++|++++|.....     +...+..+++|+.|++++|....              .+...+...+  ..+++|++
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~--------------~g~~~L~~~l--~~~~~L~~  247 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH--------------LGSSALAIAL--KSWPNLRE  247 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH--------------HHHHHHHHHG--GGCTTCCE
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccc--------------cccccccccc--cccccchh
Confidence            455666666666654322     12224445556666655554321              1112233333  45566666


Q ss_pred             EeecCCCCCCC----CCccCC--CCccCceecccCcccCC----CCCcCC-CCCCCcCeeeccCCC
Q 017094          288 LVIGDCPNFMA----LPGSLK--DLEALETLAIRGCPKLS----SLPEDM-HHLTTLKLLAIGGCP  342 (377)
Q Consensus       288 L~l~~~~~~~~----l~~~~~--~l~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~l~~c~  342 (377)
                      |++++|..-+.    +-+.+.  ..+.|++|++++|....    .+...+ .++++|+.|+++++.
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            66666642211    111111  23456677776664211    122222 145667777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=8e-12  Score=102.03  Aligned_cols=126  Identities=17%  Similarity=0.085  Sum_probs=73.9

Q ss_pred             cEEEeCCCccccCCcCcCCCCccceEeccCCCccccc-ChhhcCCCcccEEeccCccccccCchhhcccccccEeeecCc
Q 017094          124 RVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKL-PKSICELQSLQTLDLEGCLELEELPKDIRYLVILRVFALTTK  202 (377)
Q Consensus       124 ~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  202 (377)
                      +.++.+++.+..+|..+.  +++++|++++|.....+ +..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            455666666666665542  56666777655332222 334556667777777665444444555666666777777776


Q ss_pred             ccccCc-ccCCCCCCCCEEEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094          203 QKSLQE-SGIRSLGSLRCLTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD  251 (377)
Q Consensus       203 ~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  251 (377)
                      .+...+ ..|..+++|++|++++|+...--+..+..+++|++|++++|..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            666543 3456667777777776654433334456666666666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=2.8e-13  Score=111.30  Aligned_cols=128  Identities=23%  Similarity=0.286  Sum_probs=85.0

Q ss_pred             HHhhccCcccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCchhhcccccc
Q 017094          115 SCFSKSQFLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELPKDIRYLVIL  194 (377)
Q Consensus       115 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L  194 (377)
                      ..+..+++|+.|+|++|.++.++ .+..+++|++|++++| .+..+|.....+++|++|++++| .+..++ .+..+++|
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L  117 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNL  117 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEE-ECCCHH-HHHHHHHS
T ss_pred             hHHhcccccceeECcccCCCCcc-cccCCccccChhhccc-ccccccccccccccccccccccc-cccccc-cccccccc
Confidence            44666777777777777777664 4667777888888765 56666655555667788888776 455443 46777788


Q ss_pred             cEeeecCcccccCc--ccCCCCCCCCEEEccCCCCchhh----------HHhcccCcccchhcc
Q 017094          195 RVFALTTKQKSLQE--SGIRSLGSLRCLTISGCRDLEHL----------FEEIEQLSLLRTLLI  246 (377)
Q Consensus       195 ~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~----------~~~l~~l~~L~~L~l  246 (377)
                      +.|++++|.++..+  ..+..+++|+.|++++|+.....          ...+..+|+|+.|+-
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            88888887776543  35677888888888877532211          112456777777763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=1.4e-11  Score=110.05  Aligned_cols=237  Identities=13%  Similarity=0.054  Sum_probs=150.8

Q ss_pred             CCCcEEEEEecccccc---chhhhhcccCCceEEEeecCCchh-------hHHHHHHHhhccCcccEEEeCCCcccc---
Q 017094           69 KRVRHLSFAAANALRN---DFSSLLSYLGRLRTIFFSTDDEKT-------SQSFVESCFSKSQFLRVLNLRESALEV---  135 (377)
Q Consensus        69 ~~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~~~~L~~L~L~~~~~~~---  135 (377)
                      ..++.|.+.++.+...   .+...+...++|+.+.++++....       ....+...+..+++|+.|++++|.+..   
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            3678888887755442   234456778899999998765331       123344556778899999999987652   


Q ss_pred             --CCcCcCCCCccceEeccCCCcccc----cCh---------hhcCCCcccEEeccCcccc----ccCchhhcccccccE
Q 017094          136 --CPRKMGNLKHMRYLDLSRNSKIKK----LPK---------SICELQSLQTLDLEGCLEL----EELPKDIRYLVILRV  196 (377)
Q Consensus       136 --l~~~~~~l~~L~~L~l~~~~~~~~----l~~---------~~~~l~~L~~L~l~~~~~~----~~~p~~l~~l~~L~~  196 (377)
                        +...+...++|+.|++++|.....    +..         .....+.|+.+.++++...    ..+...+..++.|+.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              344455678999999997742111    111         1134678999999876422    223445677889999


Q ss_pred             eeecCcccccC------cccCCCCCCCCEEEccCCCCch----hhHHhcccCcccchhccccCCCCccCCCccceEEecc
Q 017094          197 FALTTKQKSLQ------ESGIRSLGSLRCLTISGCRDLE----HLFEEIEQLSLLRTLLIHSYDDRKNTRPRLRRVFIKE  266 (377)
Q Consensus       197 L~l~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~  266 (377)
                      |++++|.+...      ...+..+++|+.|++++|....    .+...+..+++|++|++++|....             
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~-------------  257 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA-------------  257 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH-------------
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc-------------
Confidence            99999887632      2456778999999999987543    244567788889999998886543             


Q ss_pred             cccccccchhhhhcCCCCccEEeecCCCCCC----CCCccCC-CCccCceecccCccc
Q 017094          267 ITQLLELPQWLLQCCTDTLHTLVIGDCPNFM----ALPGSLK-DLEALETLAIRGCPK  319 (377)
Q Consensus       267 ~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~----~l~~~~~-~l~~L~~L~l~~~~~  319 (377)
                       .+...+...+.....+.|++|++++|..-.    .+...+. .+++|++|++++|..
T Consensus       258 -~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         258 -RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             -HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             -hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence             111222222211234567777777765211    1222222 456777888877654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=3.3e-13  Score=110.80  Aligned_cols=156  Identities=17%  Similarity=0.159  Sum_probs=113.5

Q ss_pred             hhcCCCCCCCCCcEEEEEeccccccchhhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCcC
Q 017094           60 VNSDCQSIPKRVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPRK  139 (377)
Q Consensus        60 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~  139 (377)
                      +.......+...+.+.+.+.......++..+..+++|+.|++++|.....     ..+..+++|++|++++|.+..+|..
T Consensus        14 ~~~~~~~~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i-----~~l~~l~~L~~L~Ls~N~i~~i~~~   88 (198)
T d1m9la_          14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSLGRNLIKKIENL   88 (198)
T ss_dssp             HHHTTCCCCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC-----CCHHHHTTCCEEECCEEEECSCSSH
T ss_pred             HHHHcCCcccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc-----ccccCCccccChhhccccccccccc
Confidence            33334444445666666654333334556788999999999998765422     2377889999999999999888876


Q ss_pred             cCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCc--hhhcccccccEeeecCcccccCccc-------
Q 017094          140 MGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP--KDIRYLVILRVFALTTKQKSLQESG-------  210 (377)
Q Consensus       140 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~~-------  210 (377)
                      ...+++|++|++++| .+..++ .+..+++|++|++++| .+..++  ..+..+++|+.|++++|.+...+..       
T Consensus        89 ~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  165 (198)
T d1m9la_          89 DAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY  165 (198)
T ss_dssp             HHHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHH
T ss_pred             ccccccccccccccc-cccccc-cccccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhH
Confidence            666788999999976 666665 4788999999999987 455554  3578899999999999977643211       


Q ss_pred             ----CCCCCCCCEEEcc
Q 017094          211 ----IRSLGSLRCLTIS  223 (377)
Q Consensus       211 ----l~~l~~L~~L~l~  223 (377)
                          +..+|+|+.|+-.
T Consensus       166 r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         166 RIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             HHHHHHHCSSCCEESSG
T ss_pred             HHHHHHHCCCcCEeCCc
Confidence                4568889988743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=2.9e-11  Score=98.58  Aligned_cols=107  Identities=23%  Similarity=0.223  Sum_probs=87.3

Q ss_pred             CcccEEEeCCCcccc-C-CcCcCCCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccC-chhhcccccccEe
Q 017094          121 QFLRVLNLRESALEV-C-PRKMGNLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVF  197 (377)
Q Consensus       121 ~~L~~L~L~~~~~~~-l-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L  197 (377)
                      .++++|+|++|.+.. + +..+..+++|++|++++|......+..+..+++|++|++++| .+..+ |..|.++++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCccccc
Confidence            578999999999974 3 456788999999999987555556677888999999999997 45555 4457899999999


Q ss_pred             eecCcccccCc-ccCCCCCCCCEEEccCCCCc
Q 017094          198 ALTTKQKSLQE-SGIRSLGSLRCLTISGCRDL  228 (377)
Q Consensus       198 ~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  228 (377)
                      ++++|.++.++ ..+..+++|++|++++|...
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccCCccccccCHHHhcCCcccccccccccccc
Confidence            99999999765 45788999999999998753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.5e-12  Score=120.57  Aligned_cols=301  Identities=17%  Similarity=0.152  Sum_probs=181.3

Q ss_pred             CCcEEEEEeccccccchhhhhcccCCceEEEeecCCchh-hHHHHHHHhhccCcccEEEeCCCcccc-----CCcCcC-C
Q 017094           70 RVRHLSFAAANALRNDFSSLLSYLGRLRTIFFSTDDEKT-SQSFVESCFSKSQFLRVLNLRESALEV-----CPRKMG-N  142 (377)
Q Consensus        70 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~-~  142 (377)
                      +++.|++.+..+....+.+.+..++++++|.+.+|.... ....+...+..+++|++|+|++|.+..     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            678999999999888778888999999999999997642 234556678999999999999998752     233333 2


Q ss_pred             CCccceEeccCCCccc-----ccChhhcCCCcccEEeccCcccccc----Cc----------------------------
Q 017094          143 LKHMRYLDLSRNSKIK-----KLPKSICELQSLQTLDLEGCLELEE----LP----------------------------  185 (377)
Q Consensus       143 l~~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~----~p----------------------------  185 (377)
                      ..+|++|++++|. ++     .++..+..+++|++|++++|.....    +.                            
T Consensus        83 ~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          83 SCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            3579999999874 43     2456677899999999998742110    00                            


Q ss_pred             -hhhcccccccEeeecCcccccC----------------------------------cccCCCCCCCCEEEccCCCCchh
Q 017094          186 -KDIRYLVILRVFALTTKQKSLQ----------------------------------ESGIRSLGSLRCLTISGCRDLEH  230 (377)
Q Consensus       186 -~~l~~l~~L~~L~l~~~~~~~~----------------------------------~~~l~~l~~L~~L~l~~~~~~~~  230 (377)
                       ..+.....++.+.++++.....                                  ...+...+.++.+.+.++.....
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence             0122334555565554432100                                  00111234566666665543221


Q ss_pred             -----hHHhcccCcccchhccccCCCCc----------cCCCccceEEecccccccc----cchhhhhcCCCCccEEeec
Q 017094          231 -----LFEEIEQLSLLRTLLIHSYDDRK----------NTRPRLRRVFIKEITQLLE----LPQWLLQCCTDTLHTLVIG  291 (377)
Q Consensus       231 -----~~~~l~~l~~L~~L~l~~~~~~~----------~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~~~L~~L~l~  291 (377)
                           ..........++.+++++|....          ...+.++.++++++.....    +...+ ......|+.++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l-~~~~~~L~~l~l~  320 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-LEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-TSTTCCCCEEECT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccc-ccccccccccccc
Confidence                 11223345567777777765543          2345677777776643211    11111 1244678899988


Q ss_pred             CCCCCCC----CCccCCCCccCceecccCcccCC----CCCcCC-CCCCCcCeeeccCCCCccccCCCCCCCCCCCCCcc
Q 017094          292 DCPNFMA----LPGSLKDLEALETLAIRGCPKLS----SLPEDM-HHLTTLKLLAIGGCPALSERCKPPTGEDWPKIAHI  362 (377)
Q Consensus       292 ~~~~~~~----l~~~~~~l~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~  362 (377)
                      +|.....    +...+...++|++|+|++|....    .++..+ ...+.|++|++++| .+++.............+.+
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L  399 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSL  399 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCC
Confidence            8753222    12223356789999999985322    233333 34678999999999 46553221111111223556


Q ss_pred             ceEEeCCCccC
Q 017094          363 TQIELDDEIIK  373 (377)
Q Consensus       363 ~~~~~~~~~~~  373 (377)
                      ..+.+.++.|.
T Consensus       400 ~~L~Ls~N~i~  410 (460)
T d1z7xw1         400 RELDLSNNCLG  410 (460)
T ss_dssp             CEEECCSSSCC
T ss_pred             CEEECCCCcCC
Confidence            77777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.3e-09  Score=85.21  Aligned_cols=105  Identities=14%  Similarity=0.079  Sum_probs=86.2

Q ss_pred             cccEEEeCCCccccCCcCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccC-chhhcccccccEeee
Q 017094          122 FLRVLNLRESALEVCPRKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEEL-PKDIRYLVILRVFAL  199 (377)
Q Consensus       122 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l  199 (377)
                      ....++.+++.+...|..+..+++|++|+++++..++.++. +|..+++|+.|++++| .+..+ |..+..+++|+.|++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceec
Confidence            44667888888888888888899999999986666777764 5788999999999987 45555 566889999999999


Q ss_pred             cCcccccCcccCCCCCCCCEEEccCCCC
Q 017094          200 TTKQKSLQESGIRSLGSLRCLTISGCRD  227 (377)
Q Consensus       200 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  227 (377)
                      ++|.++..+.......+|+.|++++|..
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cCCCCcccChhhhccccccccccCCCcc
Confidence            9999998877666666899999999875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.1e-08  Score=77.16  Aligned_cols=108  Identities=18%  Similarity=0.059  Sum_probs=83.8

Q ss_pred             CCCccceEeccCCCcccccChhhcCCCcccEEeccCccccccCc-hhhcccccccEeeecCcccccCc-ccCCCCCCCCE
Q 017094          142 NLKHMRYLDLSRNSKIKKLPKSICELQSLQTLDLEGCLELEELP-KDIRYLVILRVFALTTKQKSLQE-SGIRSLGSLRC  219 (377)
Q Consensus       142 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~  219 (377)
                      .+.....++.++ ......|..+..+++|++|++.++..+..++ ..|..+++|+.|++++|.++.++ ..+..+++|++
T Consensus         6 ~c~~~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            344556788775 4566778788889999999998776677775 45899999999999999998764 56889999999


Q ss_pred             EEccCCCCchhhHHhcccCcccchhccccCCC
Q 017094          220 LTISGCRDLEHLFEEIEQLSLLRTLLIHSYDD  251 (377)
Q Consensus       220 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  251 (377)
                      |++++|+.. .++........|+.|++++|+.
T Consensus        85 L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          85 LNLSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             EECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             eeccCCCCc-ccChhhhccccccccccCCCcc
Confidence            999998754 4554444445688888888765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.8e-06  Score=63.89  Aligned_cols=87  Identities=17%  Similarity=0.080  Sum_probs=55.7

Q ss_pred             HHHHHHhhccCcccEEEeCCCccccCC---cCcCCCCccceEeccCCCcccccCh-hhcCCCcccEEeccCccccccCc-
Q 017094          111 SFVESCFSKSQFLRVLNLRESALEVCP---RKMGNLKHMRYLDLSRNSKIKKLPK-SICELQSLQTLDLEGCLELEELP-  185 (377)
Q Consensus       111 ~~~~~~~~~~~~L~~L~L~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-  185 (377)
                      ..+......+++|++|+|++|.++.++   ..+..+++|++|++++| .++.++. ...+..+|++|++.+|....... 
T Consensus        55 ~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          55 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCccc
Confidence            334445667889999999999887653   34567788888888875 5565554 22234567888888774433221 


Q ss_pred             ------hhhcccccccEee
Q 017094          186 ------KDIRYLVILRVFA  198 (377)
Q Consensus       186 ------~~l~~l~~L~~L~  198 (377)
                            ..+..+|+|+.||
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence                  2245566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=3.4e-05  Score=60.07  Aligned_cols=45  Identities=9%  Similarity=0.048  Sum_probs=23.4

Q ss_pred             hcccCCceEEEeecC-Cch-hhHHHHHHHhhccCcccEEEeCCCccc
Q 017094           90 LSYLGRLRTIFFSTD-DEK-TSQSFVESCFSKSQFLRVLNLRESALE  134 (377)
Q Consensus        90 ~~~~~~L~~L~l~~~-~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~  134 (377)
                      ..+.+.|++|+++++ ... .....+...+...+.|++|++++|.+.
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            344566777776653 222 112223334555566666666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=4.9e-05  Score=59.13  Aligned_cols=67  Identities=18%  Similarity=0.178  Sum_probs=35.9

Q ss_pred             HHHHHhhccCcccEEEeCCC-ccc-----cCCcCcCCCCccceEeccCCCccc----ccChhhcCCCcccEEeccCc
Q 017094          112 FVESCFSKSQFLRVLNLRES-ALE-----VCPRKMGNLKHMRYLDLSRNSKIK----KLPKSICELQSLQTLDLEGC  178 (377)
Q Consensus       112 ~~~~~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~  178 (377)
                      .+.......+.|+.|+|+++ .+.     .+...+...++|++|++++|....    .+...+...+.|++|++++|
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh
Confidence            34444555677888888764 343     223345555667777776553221    22233344556666666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=8.6e-06  Score=63.27  Aligned_cols=87  Identities=18%  Similarity=0.098  Sum_probs=62.4

Q ss_pred             hhhhcccCCceEEEeecCCchhhHHHHHHHhhccCcccEEEeCCCccccCCc-CcCCCCccceEeccCCCcccccC----
Q 017094           87 SSLLSYLGRLRTIFFSTDDEKTSQSFVESCFSKSQFLRVLNLRESALEVCPR-KMGNLKHMRYLDLSRNSKIKKLP----  161 (377)
Q Consensus        87 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l~----  161 (377)
                      ...+..+++|++|++++|..... ..+...+..+++|+.|++++|.++.++. ......+|+.|++++|.......    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l-~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRL-DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCC-SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCC-chhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            34556899999999999976432 2334557889999999999999987764 22234579999999875433222    


Q ss_pred             ---hhhcCCCcccEEe
Q 017094          162 ---KSICELQSLQTLD  174 (377)
Q Consensus       162 ---~~~~~l~~L~~L~  174 (377)
                         ..+..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               2355789999986

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.27  E-value=0.00016  Score=55.99  Aligned_cols=43  Identities=2%  Similarity=0.061  Sum_probs=19.2

Q ss_pred             cccCCceEEEeecC-Cch-hhHHHHHHHhhccCcccEEEeCCCcc
Q 017094           91 SYLGRLRTIFFSTD-DEK-TSQSFVESCFSKSQFLRVLNLRESAL  133 (377)
Q Consensus        91 ~~~~~L~~L~l~~~-~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~  133 (377)
                      .+.+.|+.|.+++. ..+ .....+...+..+++|+.|++++|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS   58 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcc
Confidence            34455555555542 121 11222333344555555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.07  E-value=0.00041  Score=53.52  Aligned_cols=110  Identities=7%  Similarity=0.065  Sum_probs=76.3

Q ss_pred             CCCcEEEEEec-ccccc---chhhhhcccCCceEEEeecCCch-hhHHHHHHHhhccCcccEEEeCCCccc-----cCCc
Q 017094           69 KRVRHLSFAAA-NALRN---DFSSLLSYLGRLRTIFFSTDDEK-TSQSFVESCFSKSQFLRVLNLRESALE-----VCPR  138 (377)
Q Consensus        69 ~~l~~L~l~~~-~~~~~---~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~  138 (377)
                      +.+++|.+.+. .+...   .+..++...++|++|++++|..+ .....+...+...+.++.++++++.+.     .+..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            58999999863 44443   24556778899999999999765 334445567788899999999998865     3445


Q ss_pred             CcCCCCccceEeccCCC-ccc-----ccChhhcCCCcccEEeccCc
Q 017094          139 KMGNLKHMRYLDLSRNS-KIK-----KLPKSICELQSLQTLDLEGC  178 (377)
Q Consensus       139 ~~~~l~~L~~L~l~~~~-~~~-----~l~~~~~~l~~L~~L~l~~~  178 (377)
                      .+...++|+.++++.+. .++     .+...+.+.++|+.|++..+
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            66777888877765321 222     24445566778888887654